BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032024
         (148 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
 pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
 pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
 pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
          Length = 582

 Score = 29.3 bits (64), Expect = 0.95,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 11/63 (17%)

Query: 79  ATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKTYDNVCHRKENTRKPLKP 138
           A  R  +E L    R E+   R  I+ V++  +PL           + H + N+R PLKP
Sbjct: 483 AAFRNFIEQLTGGSR-EIMRSRSPINHVDRIKEPLA----------LIHPQNNSRTPLKP 531

Query: 139 LMK 141
           L++
Sbjct: 532 LLR 534


>pdb|3R72|A Chain A, Apis Mellifera Odorant Binding Protein 5
          Length = 122

 Score = 27.7 bits (60), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 92  MRKEVAVVRKKIDSVNKELKPLGHTCQKKTYDNV-CHRKENTRKPLKP 138
           M  E  V+ K+I +V +  +  G  CQK TY  V CH K+N  K   P
Sbjct: 76  MPPEEVVIGKEIVAVCRNEEYTGDDCQK-TYQYVQCHYKQNPEKFFFP 122


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.348 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,538,581
Number of Sequences: 62578
Number of extensions: 76232
Number of successful extensions: 236
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 8
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 47 (22.7 bits)