BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032024
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2UUV3|COG6_ASPOR Conserved oligomeric Golgi complex subunit 6 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=cog6 PE=3 SV=1
Length = 812
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ ++ ++ G+V E+ KR+ T+ L D MRK +++ R+ V +E
Sbjct: 144 DVQKEVVDCNAEIVRDFGKVAEQLKRIGTVITSLNQTCDEMRKHISLARQDTAPVLEEAS 203
Query: 112 PL 113
L
Sbjct: 204 TL 205
>sp|Q5T7V8|GORAB_HUMAN RAB6-interacting golgin OS=Homo sapiens GN=GORAB PE=1 SV=1
Length = 394
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 47 RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
R EE+ ++KK + + + R + ET +L I++EL+AL D + ++ ++R +ID
Sbjct: 179 RLMEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 238
Query: 107 NKELKPLGHTCQKKTYD 123
+ L ++ +K +D
Sbjct: 239 S-----LDYSYARKRFD 250
>sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes protein 1A OS=Homo sapiens
GN=SMC1A PE=1 SV=2
Length = 1233
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 15/105 (14%)
Query: 54 EKKKLEVREKVQAHLGRVEEETKRLATIRE----------ELEALADPMRKEVAVVRKKI 103
E+KK+E K++ L +EE KR+ + E E + L + +EV + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 104 DSVNKELKPLGHTCQKKTYDNVCHRKENTRKPLKP-LMKRTRRKY 147
D +NKEL + ++ D R+E++R+ K +M+ +R Y
Sbjct: 471 DEINKEL----NQVMEQLGDARIDRQESSRQQRKAEIMESIKRLY 511
>sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosomes protein 1A OS=Mus musculus
GN=Smc1a PE=1 SV=4
Length = 1233
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 15/105 (14%)
Query: 54 EKKKLEVREKVQAHLGRVEEETKRLATIRE----------ELEALADPMRKEVAVVRKKI 103
E+KK+E K++ L +EE KR+ + E E + L + +EV + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 104 DSVNKELKPLGHTCQKKTYDNVCHRKENTRKPLKP-LMKRTRRKY 147
D +NKEL + ++ D R+E++R+ K +M+ +R Y
Sbjct: 471 DEINKEL----NQVMEQLGDARIDRQESSRQQRKAEIMESIKRLY 511
>sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosomes protein 1A OS=Rattus
norvegicus GN=Smc1a PE=1 SV=1
Length = 1233
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 15/105 (14%)
Query: 54 EKKKLEVREKVQAHLGRVEEETKRLATIRE----------ELEALADPMRKEVAVVRKKI 103
E+KK+E K++ L +EE KR+ + E E + L + +EV + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 104 DSVNKELKPLGHTCQKKTYDNVCHRKENTRKPLKP-LMKRTRRKY 147
D +NKEL + ++ D R+E++R+ K +M+ +R Y
Sbjct: 471 DEINKEL----NQVMEQLGDARIDRQESSRQQRKAEIMESIKRLY 511
>sp|O97593|SMC1A_BOVIN Structural maintenance of chromosomes protein 1A OS=Bos taurus
GN=SMC1A PE=1 SV=1
Length = 1233
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 15/105 (14%)
Query: 54 EKKKLEVREKVQAHLGRVEEETKRLATIRE----------ELEALADPMRKEVAVVRKKI 103
E+KK+E K++ L +EE KR+ + E E + L + +EV + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 104 DSVNKELKPLGHTCQKKTYDNVCHRKENTRKPLKP-LMKRTRRKY 147
D +NKEL + ++ D R+E++R+ K +M+ +R Y
Sbjct: 471 DEINKEL----NQVMEQLGDARIDRQESSRQQRKAEIMESIKRLY 511
>sp|A5PKK7|GORAB_BOVIN RAB6-interacting golgin OS=Bos taurus GN=GORAB PE=2 SV=2
Length = 370
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 47 RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
R EE+ ++KK + + + R + ET +L I++EL+AL D + ++ ++R +ID
Sbjct: 151 RLMEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 210
Query: 107 NKELKPLGHTCQKKTYD 123
+ L ++ +K +D
Sbjct: 211 S-----LDYSYARKRFD 222
>sp|B2IPC1|YBEY_STRPS Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain CGSP14)
GN=ybeY PE=3 SV=1
Length = 165
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKK--- 57
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRNTDR 60
Query: 58 ----LEVREKVQAHLGRVEE---ETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
+ + K + + EE E LA + E +A + + ID +++
Sbjct: 61 PTDVISLEYKPELEIAFDEEDLLENSELAEMMSEFDAY-------IGELFISIDKAHEQA 113
Query: 111 KPLGHTCQKK 120
+ GH+ +++
Sbjct: 114 EEYGHSFERE 123
>sp|Q97R63|YBEY_STRPN Endoribonuclease YbeY OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=ybeY PE=3 SV=1
Length = 165
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKK--- 57
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRNTDR 60
Query: 58 ----LEVREKVQAHLGRVEE---ETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
+ + K + + EE E LA + E +A + + ID +++
Sbjct: 61 PTDVISLEYKPELEIAFDEEDLLENSELAEMMSEFDAY-------IGELFISIDKAHEQA 113
Query: 111 KPLGHTCQKK 120
+ GH+ +++
Sbjct: 114 EEYGHSFERE 123
>sp|B1H222|GORAB_RAT RAB6-interacting golgin OS=Rattus norvegicus GN=Gorab PE=2 SV=2
Length = 368
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 47 RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
R EE+ ++KK + + + R + ET +L I++EL+AL D + ++ ++R +ID
Sbjct: 154 RLMEEKNKRKKALLAQAIAERSRRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 213
Query: 107 NKELKPLGHTCQKKTYD 123
+ L ++ +K +D
Sbjct: 214 S-----LEYSYARKRFD 225
>sp|C1CRT3|YBEY_STRZT Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain
Taiwan19F-14) GN=ybeY PE=3 SV=1
Length = 165
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKK 56
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYR 56
>sp|C1CK48|YBEY_STRZP Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain P1031)
GN=ybeY PE=3 SV=1
Length = 165
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKK 56
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYR 56
>sp|C1CDW2|YBEY_STRZJ Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain JJA)
GN=ybeY PE=3 SV=1
Length = 165
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKK 56
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYR 56
>sp|Q8DQ35|YBEY_STRR6 Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=ybeY PE=3 SV=1
Length = 165
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKK 56
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYR 56
>sp|B8ZP64|YBEY_STRPJ Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain ATCC
700669 / Spain 23F-1) GN=ybeY PE=3 SV=1
Length = 165
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKK 56
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYR 56
>sp|B1IBC7|YBEY_STRPI Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain
Hungary19A-6) GN=ybeY PE=3 SV=1
Length = 165
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKK 56
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYR 56
>sp|C1C6U4|YBEY_STRP7 Endoribonuclease YbeY OS=Streptococcus pneumoniae (strain 70585)
GN=ybeY PE=3 SV=1
Length = 165
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKK 56
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYR 56
>sp|Q04KW1|YBEY_STRP2 Endoribonuclease YbeY OS=Streptococcus pneumoniae serotype 2
(strain D39 / NCTC 7466) GN=ybeY PE=3 SV=1
Length = 165
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKK 56
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYR 56
>sp|B5E486|YBEY_STRP4 Endoribonuclease YbeY OS=Streptococcus pneumoniae serotype 19F
(strain G54) GN=ybeY PE=3 SV=1
Length = 165
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 1 MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKK 56
M IE + +++ MLQQ+ L F++ L K+D+EM+ + +T R+ E +E +
Sbjct: 1 MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYR 56
>sp|Q8REH4|SMC_FUSNN Chromosome partition protein Smc OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=smc PE=3 SV=2
Length = 1183
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 53/95 (55%), Gaps = 12/95 (12%)
Query: 16 MLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEET 75
+L++ +LS S LSKD +S + E+ EK K ++++ + +EE
Sbjct: 727 LLKKDFESLSEKSEKLSKDIRSISFNI--------EDAEKYKTSYQDRINSSFSTIEETE 778
Query: 76 KRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
K +A++++++EA + +++ ++ +IDS+NK+
Sbjct: 779 KHIASLKKDIEADENLLKQTIS----EIDSLNKQF 809
>sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus GN=Lama2 PE=1 SV=1
Length = 3106
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 11 NLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTT-FRAKEEEIEKKKLEVREKVQAHLG 69
+LN L + + +L S + +D SA+T AK + +++K E + +A L
Sbjct: 1990 DLNDLKTRLETADLRNSGLLGALNDTMDKLSAITNDTAAKLQAVKEKAREANDTAKAVLA 2049
Query: 70 RVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKTYDNVCHRK 129
+V++ + L +++ LAD + K AVV+ S NK + G + + + R
Sbjct: 2050 QVKDLHQNLDGLKQNYNKLADSVAKTNAVVKDP--SKNKIIADAGTSV--RNLEQEADRL 2105
Query: 130 ENTRKPLKPLMKRTRRKYS 148
+ KP+K L ++ S
Sbjct: 2106 IDKLKPIKELEDNLKKNIS 2124
>sp|Q8IWB1|IPRI_HUMAN Inositol 1,4,5-trisphosphate receptor-interacting protein OS=Homo
sapiens GN=ITPRIP PE=1 SV=1
Length = 547
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 50 EEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKE 95
EEEI +K +EK+Q R+EEE RLA +E LE +A+ R++
Sbjct: 34 EEEIIRKMQAHQEKLQLEQLRLEEEVARLAAEKEALEQVAEEGRQQ 79
>sp|Q8BRM2|GORAB_MOUSE RAB6-interacting golgin OS=Mus musculus GN=Gorab PE=1 SV=1
Length = 368
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 47 RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
R EE+ ++KK + + + + + ET +L I++EL+AL D + ++ ++R +ID
Sbjct: 154 RLMEEKNKRKKALLAQAIAERSKKTQAETIKLKRIQKELQALDDMVSADIGILRNRIDQA 213
Query: 107 NKELKPLGHTCQKKTYD 123
+ L ++ +K +D
Sbjct: 214 S-----LEYSYARKRFD 225
>sp|C8V7C6|COG6_EMENI Conserved oligomeric Golgi complex subunit 6 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=cog6 PE=3 SV=1
Length = 739
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ ++ ++ G V E+ KR+ ++ L+ D MRK + + ++ V +E
Sbjct: 81 DVQKEVVDCNAEIVRDFGNVAEQLKRIGSVISSLKETCDEMRKHIVLAKQDTTPVLEEAS 140
Query: 112 PL 113
L
Sbjct: 141 AL 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.124 0.326
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,351,186
Number of Sequences: 539616
Number of extensions: 1892888
Number of successful extensions: 16849
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 850
Number of HSP's that attempted gapping in prelim test: 14903
Number of HSP's gapped (non-prelim): 2625
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)