Query 032024
Match_columns 148
No_of_seqs 31 out of 33
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 13:41:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032024.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032024hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q08a_ a.6.1.3 (A:) Transcrip 64.0 3.7 0.00027 26.2 3.8 33 58-90 38-70 (94)
2 d1qc7a_ a.118.14.1 (A:) FliG { 56.2 6.6 0.00048 25.5 4.0 53 59-116 37-89 (101)
3 d2d8da1 a.130.1.1 (A:3-82) Cho 42.4 4.3 0.00031 24.8 1.2 18 96-113 3-20 (80)
4 d1cpqa_ a.24.3.2 (A:) Cytochro 40.7 2.3 0.00017 28.4 -0.4 50 73-128 66-123 (129)
5 d2jn6a1 a.4.1.19 (A:1-89) Unch 38.4 11 0.00077 23.2 2.6 27 91-117 63-89 (89)
6 d1hdja_ a.2.3.1 (A:) HSP40 {Hu 37.0 12 0.00087 22.6 2.7 27 69-95 36-62 (77)
7 d2j8wa1 a.24.3.2 (A:1-128) Cyt 35.9 4.1 0.0003 27.1 0.3 49 74-128 68-124 (128)
8 d2gtvx1 a.130.1.3 (X:1-93) Cho 35.9 5.1 0.00037 25.5 0.8 18 94-111 3-20 (93)
9 d1ybza1 a.130.1.1 (A:2-75) mon 35.6 6.9 0.00051 24.0 1.4 18 96-113 3-20 (74)
10 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 35.4 31 0.0022 21.9 4.7 28 92-119 40-67 (196)
11 d1ecma_ a.130.1.1 (A:) Chorism 34.3 6.9 0.0005 24.2 1.2 18 96-113 3-20 (91)
12 d2h9da1 a.130.1.1 (A:1-94) Sal 29.5 9.2 0.00067 24.2 1.2 19 95-113 9-27 (94)
13 d1fxka_ a.2.5.1 (A:) Prefoldin 28.9 63 0.0046 20.2 6.8 63 63-125 19-96 (107)
14 d1t06a_ a.118.1.17 (A:) Hypoth 22.9 22 0.0016 25.5 2.4 18 78-95 3-20 (235)
15 d2d4ca1 a.238.1.1 (A:11-247) E 21.9 89 0.0065 20.3 5.3 44 60-105 3-46 (237)
16 d1s05a_ a.24.3.2 (A:) Cytochro 21.7 17 0.0012 23.9 1.4 50 75-130 69-124 (129)
17 d1us0a_ c.1.7.1 (A:) Aldose re 21.0 25 0.0018 24.7 2.3 49 75-127 264-313 (314)
No 1
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=63.99 E-value=3.7 Score=26.19 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccc
Q 032024 58 LEVREKVQAHLGRVEEETKRLATIREELEALAD 90 (148)
Q Consensus 58 mEVReKVqaqLGRvEEETkRLA~IrEELE~laD 90 (148)
-+|+.-+..+|..+++-...|..++.+|..|.|
T Consensus 38 ~~v~~l~~~kl~~i~~kI~~L~~l~~~L~~l~~ 70 (94)
T d1q08a_ 38 QESKGIVQERLQEVEARIAELQSMQRSLQRLND 70 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777788888888888888888888887654
No 2
>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=56.25 E-value=6.6 Score=25.45 Aligned_cols=53 Identities=25% Similarity=0.418 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhcccccchhh
Q 032024 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHT 116 (148)
Q Consensus 59 EVReKVqaqLGRvEEETkRLA~IrEELE~laDPmRKEVa~VRKkID~vNreLKPLgqt 116 (148)
+++++|..-|.. +.=+.|++|++.++...-.||...|+.|=.+=|+|---|..
T Consensus 37 ~~~~~il~nms~-----R~~~~l~ee~~~~g~v~~~dve~Aq~~Iv~~~r~l~~~G~I 89 (101)
T d1qc7a_ 37 ELKEKIFKNMSK-----RAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLEEAGEI 89 (101)
T ss_dssp HHHHHHHTTSCH-----HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 478888776642 33357899999999999999999999998887777655543
No 3
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=42.44 E-value=4.3 Score=24.84 Aligned_cols=18 Identities=39% Similarity=0.719 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhhcccccc
Q 032024 96 VAVVRKKIDSVNKELKPL 113 (148)
Q Consensus 96 Va~VRKkID~vNreLKPL 113 (148)
++.+|++||.++++|-.|
T Consensus 3 L~~lR~~ID~iD~~i~~L 20 (80)
T d2d8da1 3 IQALRKEVDRVNREILRL 20 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467888899888887654
No 4
>d1cpqa_ a.24.3.2 (A:) Cytochrome c' {Rhodobacter capsulatus [TaxId: 1061]}
Probab=40.71 E-value=2.3 Score=28.38 Aligned_cols=50 Identities=24% Similarity=0.450 Sum_probs=38.7
Q ss_pred HHHhhHHHHHHHHHhc---cchhHHHHHHHHHHH-----hhhhcccccchhhhhhhcccccccc
Q 032024 73 EETKRLATIREELEAL---ADPMRKEVAVVRKKI-----DSVNKELKPLGHTCQKKTYDNVCHR 128 (148)
Q Consensus 73 EETkRLA~IrEELE~l---aDPmRKEVa~VRKkI-----D~vNreLKPLgqtCqKKEkEY~~~~ 128 (148)
-.|+-+..||++-+.| ++-+...++.+-.-. +.+...++.||+||- -||.
T Consensus 66 ~~s~A~~~IW~d~~~F~~~~~~~~~aa~~L~~aa~~~d~~~~~~a~~~l~~sCk------sCH~ 123 (129)
T d1cpqa_ 66 GQTEAKAAIWANMDDFGAKGKAMHEAGGAVIAAANAGDGAAFGAALQKLGGTCK------ACHD 123 (129)
T ss_dssp TTCCBCTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------HHHH
T ss_pred CCcchHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhHH------HHHH
Confidence 4688889999988777 777777777766654 447788999999996 4775
No 5
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=38.39 E-value=11 Score=23.22 Aligned_cols=27 Identities=7% Similarity=0.201 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHhhhhcccccchhhh
Q 032024 91 PMRKEVAVVRKKIDSVNKELKPLGHTC 117 (148)
Q Consensus 91 PmRKEVa~VRKkID~vNreLKPLgqtC 117 (148)
|.++|+..+++-.+.+.++..=++++|
T Consensus 63 ~~~~ei~~L~~En~~Lk~~~~~~a~~c 89 (89)
T d2jn6a1 63 SEAEQIRQLKKENALQRARTRHPAESC 89 (89)
T ss_dssp HTHHHHHHHHHCGGGGGGTTSCCCGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456788888888888888888888888
No 6
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.97 E-value=12 Score=22.60 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=20.6
Q ss_pred hhhHHHHhhHHHHHHHHHhccchhHHH
Q 032024 69 GRVEEETKRLATIREELEALADPMRKE 95 (148)
Q Consensus 69 GRvEEETkRLA~IrEELE~laDPmRKE 95 (148)
....+...++..|.+--+.|+||.++.
T Consensus 36 ~~~~~~~~~~~~i~~Ay~vLsdp~~R~ 62 (77)
T d1hdja_ 36 NKEPGAEEKFKEIAEAYDVLSDPRKRE 62 (77)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhcCHHHHH
Confidence 334455667888999999999998764
No 7
>d2j8wa1 a.24.3.2 (A:1-128) Cytochrome c' {Rhodocyclus gelatinosus [TaxId: 28068]}
Probab=35.94 E-value=4.1 Score=27.08 Aligned_cols=49 Identities=16% Similarity=0.355 Sum_probs=36.0
Q ss_pred HHhhHHHHHHHHHhc---cchhHHHHHHHHHH-----Hhhhhcccccchhhhhhhcccccccc
Q 032024 74 ETKRLATIREELEAL---ADPMRKEVAVVRKK-----IDSVNKELKPLGHTCQKKTYDNVCHR 128 (148)
Q Consensus 74 ETkRLA~IrEELE~l---aDPmRKEVa~VRKk-----ID~vNreLKPLgqtCqKKEkEY~~~~ 128 (148)
.|+-+..||++-+.| ++-+.+.+..+..- .|.+...+.+||+||- -||.
T Consensus 68 ~t~A~p~IW~d~~~F~~~~~~~~~aa~~L~~aa~~~d~~~~~~a~~~lg~tCk------sCH~ 124 (128)
T d2j8wa1 68 GTEAKPAVWSDAAGFKAAADKFAAAVDKLDAAGKTGDFAQIKAAVGETGGACK------GCHD 124 (128)
T ss_dssp TCCBCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------HHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH------HHHH
Confidence 478889999876665 66677776655332 4567888999999996 4775
No 8
>d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246 {Methanococcus jannaschii [TaxId: 2190]}
Probab=35.88 E-value=5.1 Score=25.52 Aligned_cols=18 Identities=33% Similarity=0.663 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhhcccc
Q 032024 94 KEVAVVRKKIDSVNKELK 111 (148)
Q Consensus 94 KEVa~VRKkID~vNreLK 111 (148)
+++..+|++||.++.+|=
T Consensus 3 ~~L~~lR~~Id~iD~~ii 20 (93)
T d2gtvx1 3 EKLAEIRKKIDEIDNKIL 20 (93)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578889999999999883
No 9
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=35.58 E-value=6.9 Score=24.02 Aligned_cols=18 Identities=28% Similarity=0.663 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhhcccccc
Q 032024 96 VAVVRKKIDSVNKELKPL 113 (148)
Q Consensus 96 Va~VRKkID~vNreLKPL 113 (148)
...+|.+||.++.+|--|
T Consensus 3 L~~lR~~ID~iD~~i~~L 20 (74)
T d1ybza1 3 LKLLRKEIDKIDNQIISL 20 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467899999999887544
No 10
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.43 E-value=31 Score=21.94 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHhhhhcccccchhhhhh
Q 032024 92 MRKEVAVVRKKIDSVNKELKPLGHTCQK 119 (148)
Q Consensus 92 mRKEVa~VRKkID~vNreLKPLgqtCqK 119 (148)
...+...++..|+.+..++.-+.+.|..
T Consensus 40 ~~~~~~~~~~~i~~~~~~~~~~~~~~k~ 67 (196)
T d1fioa_ 40 NEEQASHLRHSLDNFVAQATDLQFKLKN 67 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555543
No 11
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=34.29 E-value=6.9 Score=24.25 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=13.3
Q ss_pred HHHHHHHHhhhhcccccc
Q 032024 96 VAVVRKKIDSVNKELKPL 113 (148)
Q Consensus 96 Va~VRKkID~vNreLKPL 113 (148)
+..+|++||.++.+|--|
T Consensus 3 L~~lR~~ID~iD~~i~~L 20 (91)
T d1ecma_ 3 LLALREKISALDEKLLAL 20 (91)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456888888888877544
No 12
>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB {Pseudomonas aeruginosa [TaxId: 287]}
Probab=29.47 E-value=9.2 Score=24.21 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhhcccccc
Q 032024 95 EVAVVRKKIDSVNKELKPL 113 (148)
Q Consensus 95 EVa~VRKkID~vNreLKPL 113 (148)
..+.+|++||.++.+|=.|
T Consensus 9 ~L~~lR~~ID~ID~~i~~L 27 (94)
T d2h9da1 9 GLADIREAIDRIDLDIVQA 27 (94)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678999999999887554
No 13
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=28.90 E-value=63 Score=20.22 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=45.7
Q ss_pred HHHHHhhhhHHHHhhHHHHHHHHHhccch--------------hHHH-HHHHHHHHhhhhcccccchhhhhhhccccc
Q 032024 63 KVQAHLGRVEEETKRLATIREELEALADP--------------MRKE-VAVVRKKIDSVNKELKPLGHTCQKKTYDNV 125 (148)
Q Consensus 63 KVqaqLGRvEEETkRLA~IrEELE~laDP--------------mRKE-Va~VRKkID~vNreLKPLgqtCqKKEkEY~ 125 (148)
.+.+++.-++-+........+||+.+-+- ...| +..|-++++..+.+++-|...+...+++|.
T Consensus 19 ~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~ 96 (107)
T d1fxka_ 19 AISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777788888877542 1223 346778899999999888888887777664
No 14
>d1t06a_ a.118.1.17 (A:) Hypothetical protein BC3264 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}
Probab=22.91 E-value=22 Score=25.52 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=14.7
Q ss_pred HHHHHHHHHhccchhHHH
Q 032024 78 LATIREELEALADPMRKE 95 (148)
Q Consensus 78 LA~IrEELE~laDPmRKE 95 (148)
+.+|.+||++||||--+.
T Consensus 3 ~e~i~~eL~~l~~~~~~~ 20 (235)
T d1t06a_ 3 FKTVMQELEALGKERTKK 20 (235)
T ss_dssp HHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHH
Confidence 578999999999994443
No 15
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.86 E-value=89 Score=20.28 Aligned_cols=44 Identities=27% Similarity=0.277 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhh
Q 032024 60 VREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDS 105 (148)
Q Consensus 60 VReKVqaqLGRvEEETkRLA~IrEELE~laDPmRKEVa~VRKkID~ 105 (148)
+..+|...||++|. |. |..--++||.=.|-++.....+-|.+-.
T Consensus 3 ~~q~~~ek~G~~e~-T~-ld~~f~~lEk~~~~~~~~~~kl~k~~~~ 46 (237)
T d2d4ca1 3 ATQKVSEKVGGAEG-TK-LDDDFKEMERKVDVTSRAVMEIMTKTIE 46 (237)
T ss_dssp HHHHHHHHHTSHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHcCCCCc-CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999854 55 8887888898888888888888887643
No 16
>d1s05a_ a.24.3.2 (A:) Cytochrome c-556 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=21.70 E-value=17 Score=23.93 Aligned_cols=50 Identities=20% Similarity=0.426 Sum_probs=29.8
Q ss_pred HhhHHHHHHHHHhcc---chhHHHHHHHHH---HHhhhhcccccchhhhhhhccccccccCC
Q 032024 75 TKRLATIREELEALA---DPMRKEVAVVRK---KIDSVNKELKPLGHTCQKKTYDNVCHRKE 130 (148)
Q Consensus 75 TkRLA~IrEELE~la---DPmRKEVa~VRK---kID~vNreLKPLgqtCqKKEkEY~~~~~~ 130 (148)
|+-+..||++-+.|. +-+.+.+..+-- =.|.+...+.+||+||- -||..-
T Consensus 69 t~A~p~IW~d~~~F~~~~~~~~~~a~~laa~~~d~~~~~~a~~~vg~tCk------sCH~~f 124 (129)
T d1s05a_ 69 YSSSPKIWAERAKFDTEIADFAKAVDGAKGKIKDVDTLKAAMQPIGKACG------NCHENF 124 (129)
T ss_dssp CCCCTHHHHTHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHTTTTTHHHH------HHHHHS
T ss_pred ccccHHHHhCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhHHH------HHHHHH
Confidence 555566666555442 333344333322 24667788999999996 488643
No 17
>d1us0a_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.99 E-value=25 Score=24.68 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=33.0
Q ss_pred HhhHHHHHHHHHhccchh-HHHHHHHHHHHhhhhcccccchhhhhhhccccccc
Q 032024 75 TKRLATIREELEALADPM-RKEVAVVRKKIDSVNKELKPLGHTCQKKTYDNVCH 127 (148)
Q Consensus 75 TkRLA~IrEELE~laDPm-RKEVa~VRKkID~vNreLKPLgqtCqKKEkEY~~~ 127 (148)
++..++|.|=|.++.=++ ..|+ +.|+.+|+-.+=.+..|-.+=++|.||
T Consensus 264 ~~~~~~l~enl~a~~~~Ls~ee~----~~L~~l~~~~r~~~~~~~~~~~~~~~~ 313 (314)
T d1us0a_ 264 SVTPERIAENFKVFDFELSSQDM----TTLLSYNRNWRVCALLSCTSHKDYPFH 313 (314)
T ss_dssp CCCHHHHHHHHCCSSCCCCHHHH----HHHHTTCCCCCSCCCGGGTTSTTCCCC
T ss_pred CCCHHHHHHHHhhCCCCCCHHHH----HHHhCcCCCCeecCCccccCCCCCCCC
Confidence 466778888777765433 3333 456778887666666655666789998
Done!