Your job contains 1 sequence.
>032025
MNKGAGSGPTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESF
MMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARI
GEEAAASLKELEAHYYSSGHRTTQNSQQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032025
(148 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2205130 - symbol:MED22B species:3702 "Arabidop... 498 1.2e-47 1
TAIR|locus:2032920 - symbol:AT1G16430 species:3702 "Arabi... 494 3.3e-47 1
UNIPROTKB|Q15528 - symbol:MED22 "Mediator of RNA polymera... 193 2.6e-15 1
UNIPROTKB|Q5T8T8 - symbol:MED22 "Mediator complex subunit... 193 2.6e-15 1
MGI|MGI:98446 - symbol:Med22 "mediator complex subunit 22... 193 2.6e-15 1
RGD|1564893 - symbol:Med22 "mediator complex subunit 22" ... 193 2.6e-15 1
UNIPROTKB|Q5E9K2 - symbol:MED22 "Mediator of RNA polymera... 192 3.3e-15 1
UNIPROTKB|E2QV33 - symbol:MED22 "Uncharacterized protein"... 192 3.3e-15 1
UNIPROTKB|Q800L3 - symbol:MED22 "Mediator of RNA polymera... 191 4.2e-15 1
DICTYBASE|DDB_G0279087 - symbol:med22 "putative mediator ... 188 8.8e-15 1
UNIPROTKB|E7EN96 - symbol:MED22 "Mediator of RNA polymera... 185 1.8e-14 1
ZFIN|ZDB-GENE-040625-156 - symbol:med22 "mediator complex... 181 4.9e-14 1
UNIPROTKB|E9PGW7 - symbol:MED22 "Mediator of RNA polymera... 171 5.6e-13 1
UNIPROTKB|Q5T8T7 - symbol:MED22 "Mediator complex subunit... 166 1.9e-12 1
FB|FBgn0040339 - symbol:MED22 "Mediator complex subunit 2... 147 2.0e-10 1
FB|FBgn0052971 - symbol:CG32971 species:7227 "Drosophila ... 107 3.4e-06 1
WB|WBGene00007022 - symbol:mdt-22 species:6239 "Caenorhab... 102 1.1e-05 1
ASPGD|ASPL0000007200 - symbol:AN6109 species:162425 "Emer... 100 1.9e-05 1
>TAIR|locus:2205130 [details] [associations]
symbol:MED22B species:3702 "Arabidopsis thaliana"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016592 "mediator complex" evidence=IEA]
InterPro:IPR009332 Pfam:PF06179 EMBL:CP002684 GO:GO:0016592
GO:GO:0001104 EMBL:AC026875 eggNOG:NOG271715 KO:K15139
ProtClustDB:CLSN2687721 PANTHER:PTHR12434 EMBL:BT002871
EMBL:BT020295 EMBL:BT030611 EMBL:AY086596 IPI:IPI00521994
PIR:G86214 RefSeq:NP_563802.1 UniGene:At.43492 IntAct:Q8LCH5
STRING:Q8LCH5 PaxDb:Q8LCH5 PRIDE:Q8LCH5 DNASU:837310
EnsemblPlants:AT1G07950.1 GeneID:837310 KEGG:ath:AT1G07950
TAIR:At1g07950 HOGENOM:HOG000006377 InParanoid:Q9LN12 OMA:ETYMMEM
Genevestigator:Q8LCH5 Uniprot:Q8LCH5
Length = 154
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 98/140 (70%), Positives = 111/140 (79%)
Query: 4 GAGSGPTXXXXXXXXQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMME 63
G GSGPT QKQK L+QRVETDI S+VDNF+Q+VNV+RV+DPPV+NSQE++MME
Sbjct: 12 GGGSGPTAAAAAAALQKQKALLQRVETDITSVVDNFTQIVNVSRVSDPPVKNSQETYMME 71
Query: 64 MRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXX 123
MRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR EF+Q+AEKT+R+LARI
Sbjct: 72 MRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIEEFDQEAEKTNRLLARIADD 131
Query: 124 XXXXXXXXXXHYYSSGHRTT 143
HYYSS R T
Sbjct: 132 ASANLKELESHYYSSAQRLT 151
>TAIR|locus:2032920 [details] [associations]
symbol:AT1G16430 species:3702 "Arabidopsis thaliana"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016592 "mediator complex" evidence=IDA]
InterPro:IPR009332 Pfam:PF06179 EMBL:CP002684 EMBL:AC006341
GO:GO:0016592 GO:GO:0001104 EMBL:AK117750 EMBL:BT003677
EMBL:AY085301 IPI:IPI00517226 PIR:F86299 RefSeq:NP_563997.1
UniGene:At.41882 IntAct:Q9SA42 STRING:Q9SA42 PRIDE:Q9SA42
EnsemblPlants:AT1G16430.1 GeneID:838213 KEGG:ath:AT1G16430
TAIR:At1g16430 eggNOG:NOG271715 InParanoid:Q9SA42 KO:K15139
OMA:NVARVSD PhylomeDB:Q9SA42 ProtClustDB:CLSN2687721
Genevestigator:Q9SA42 PANTHER:PTHR12434 Uniprot:Q9SA42
Length = 150
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 99/147 (67%), Positives = 115/147 (78%)
Query: 1 MNKGAGSG----PTXXXXXXXXQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNS 56
MNKG GSG PT QKQK L+QRV+TDI S+VDNF+Q+VNVARV+DPP++NS
Sbjct: 2 MNKGGGSGGGSGPTAAAAAAALQKQKALLQRVDTDITSVVDNFNQIVNVARVSDPPMKNS 61
Query: 57 QESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRM 116
QE++MMEMRASR+VQAADSLLKLVSELKQTAIFSGFASLNDHVEQR EF+Q+AEKT+R+
Sbjct: 62 QEAYMMEMRASRLVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIAEFDQEAEKTNRL 121
Query: 117 LARIGXXXXXXXXXXXXHYYSSGHRTT 143
LARI HYYSS R+T
Sbjct: 122 LARIADDASASLKELESHYYSSAQRST 148
>UNIPROTKB|Q15528 [details] [associations]
symbol:MED22 "Mediator of RNA polymerase II transcription
subunit 22" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009332 Pfam:PF06179 GO:GO:0005737 Reactome:REACT_111045
EMBL:CH471090 EMBL:AL158826 GO:GO:0016592 GO:GO:0001104
eggNOG:NOG271715 KO:K15139 PANTHER:PTHR12434 HOGENOM:HOG000006377
CTD:6837 HOVERGEN:HBG058487 OMA:VKSIMDN OrthoDB:EOG4X3H2K
EMBL:X85178 EMBL:AJ224639 EMBL:AJ224358 EMBL:AJ224359 EMBL:AK124518
EMBL:AK126069 EMBL:BC024225 EMBL:BC040111 IPI:IPI00018040
IPI:IPI00219228 RefSeq:NP_598395.1 RefSeq:NP_852468.1
UniGene:Hs.78354 ProteinModelPortal:Q15528 IntAct:Q15528
MINT:MINT-1397525 STRING:Q15528 PhosphoSite:Q15528 DMDM:6175074
PRIDE:Q15528 DNASU:6837 Ensembl:ENST00000343730
Ensembl:ENST00000344469 Ensembl:ENST00000476080
Ensembl:ENST00000486395 Ensembl:ENST00000491289
Ensembl:ENST00000564120 Ensembl:ENST00000565731
Ensembl:ENST00000566494 Ensembl:ENST00000567581
Ensembl:ENST00000570094 GeneID:6837 KEGG:hsa:6837 UCSC:uc004cdc.3
UCSC:uc004cdd.3 GeneCards:GC09M136205 HGNC:HGNC:11477 HPA:HPA020391
MIM:185641 neXtProt:NX_Q15528 PharmGKB:PA162395486
InParanoid:Q15528 PhylomeDB:Q15528 GenomeRNAi:6837 NextBio:26691
ArrayExpress:Q15528 Bgee:Q15528 CleanEx:HS_MED22
Genevestigator:Q15528 GermOnline:ENSG00000148297 Uniprot:Q15528
Length = 200
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 43/129 (33%), Positives = 74/129 (57%)
Query: 19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
Q ++TL+Q R++ DI SI+DNF++++ A++ D + Q+++ M +RA+ +
Sbjct: 9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANI 68
Query: 70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L +
Sbjct: 69 VRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDEISIDLY 128
Query: 130 XXXXHYYSS 138
YYSS
Sbjct: 129 ELEEEYYSS 137
>UNIPROTKB|Q5T8T8 [details] [associations]
symbol:MED22 "Mediator complex subunit 22" species:9606
"Homo sapiens" [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] InterPro:IPR009332 Pfam:PF06179 EMBL:AL158826
GO:GO:0016592 GO:GO:0001104 PANTHER:PTHR12434 HOGENOM:HOG000006377
HOVERGEN:HBG058487 UniGene:Hs.78354 HGNC:HGNC:11477 IPI:IPI01012538
STRING:Q5T8T8 Ensembl:ENST00000446777 Uniprot:Q5T8T8
Length = 137
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 43/129 (33%), Positives = 74/129 (57%)
Query: 19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
Q ++TL+Q R++ DI SI+DNF++++ A++ D + Q+++ M +RA+ +
Sbjct: 9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANI 68
Query: 70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L +
Sbjct: 69 VRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDEISIDLY 128
Query: 130 XXXXHYYSS 138
YYSS
Sbjct: 129 ELEEEYYSS 137
>MGI|MGI:98446 [details] [associations]
symbol:Med22 "mediator complex subunit 22" species:10090 "Mus
musculus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016592 "mediator
complex" evidence=ISO] InterPro:IPR009332 Pfam:PF06179
MGI:MGI:98446 Reactome:REACT_127416 EMBL:AL773563
Reactome:REACT_27166 GO:GO:0016592 GO:GO:0001104 eggNOG:NOG271715
KO:K15139 PANTHER:PTHR12434 HOGENOM:HOG000006377 CTD:6837
GeneTree:ENSGT00390000004339 HOVERGEN:HBG058487 OMA:VKSIMDN
OrthoDB:EOG4X3H2K EMBL:X85169 EMBL:AK144744 EMBL:AK161053
EMBL:AK166250 EMBL:AK166474 EMBL:BC018225 IPI:IPI00123503
IPI:IPI00655148 RefSeq:NP_001029080.1 RefSeq:NP_035643.1
UniGene:Mm.397932 IntAct:Q62276 STRING:Q62276 PhosphoSite:Q62276
PaxDb:Q62276 PRIDE:Q62276 Ensembl:ENSMUST00000015920
Ensembl:ENSMUST00000102899 GeneID:20933 KEGG:mmu:20933
UCSC:uc008iwd.1 UCSC:uc008iwe.1 InParanoid:Q62276 NextBio:299867
Bgee:Q62276 CleanEx:MM_MED22 Genevestigator:Q62276
GermOnline:ENSMUSG00000015776 Uniprot:Q62276
Length = 200
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 43/129 (33%), Positives = 74/129 (57%)
Query: 19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
Q ++TL+Q R++ DI SI+DNF++++ A++ D + Q+++ M +RA+ +
Sbjct: 9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANI 68
Query: 70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L +
Sbjct: 69 VRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVSIDLY 128
Query: 130 XXXXHYYSS 138
YYSS
Sbjct: 129 ELEEEYYSS 137
>RGD|1564893 [details] [associations]
symbol:Med22 "mediator complex subunit 22" species:10116 "Rattus
norvegicus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA;ISO] InterPro:IPR009332 Pfam:PF06179 RGD:1564893
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG271715 KO:K15139
PANTHER:PTHR12434 HOGENOM:HOG000006377 CTD:6837
GeneTree:ENSGT00390000004339 HOVERGEN:HBG058487 OMA:VKSIMDN
OrthoDB:EOG4X3H2K EMBL:BC127519 EMBL:DN932977 IPI:IPI00211619
IPI:IPI00869894 RefSeq:NP_001071147.1 RefSeq:XP_003749478.1
UniGene:Rn.202721 STRING:A0JPN6 PRIDE:A0JPN6
Ensembl:ENSRNOT00000006720 GeneID:100911917 GeneID:499762
KEGG:rno:100911917 KEGG:rno:499762 UCSC:RGD:1564893
InParanoid:A0JPN6 NextBio:703919 ArrayExpress:A0JPN6
Genevestigator:A0JPN6 Uniprot:A0JPN6
Length = 200
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 43/129 (33%), Positives = 74/129 (57%)
Query: 19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
Q ++TL+Q R++ DI SI+DNF++++ A++ D + Q+++ M +RA+ +
Sbjct: 9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANI 68
Query: 70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L +
Sbjct: 69 VRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVSIDLY 128
Query: 130 XXXXHYYSS 138
YYSS
Sbjct: 129 ELEEEYYSS 137
>UNIPROTKB|Q5E9K2 [details] [associations]
symbol:MED22 "Mediator of RNA polymerase II transcription
subunit 22" species:9913 "Bos taurus" [GO:0016592 "mediator
complex" evidence=IEA] [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] InterPro:IPR009332 Pfam:PF06179
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG271715 KO:K15139
PANTHER:PTHR12434 HOGENOM:HOG000006377 EMBL:BT020918 EMBL:BC148153
IPI:IPI00705251 IPI:IPI00871085 RefSeq:NP_001029914.1
UniGene:Bt.5685 STRING:Q5E9K2 PRIDE:Q5E9K2
Ensembl:ENSBTAT00000015357 GeneID:613736 KEGG:bta:613736 CTD:6837
GeneTree:ENSGT00390000004339 HOVERGEN:HBG058487 InParanoid:Q5E9K2
OMA:VKSIMDN OrthoDB:EOG4X3H2K NextBio:20898738 Uniprot:Q5E9K2
Length = 201
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 42/129 (32%), Positives = 74/129 (57%)
Query: 19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
Q ++TL+Q R++ D+ SI+DNF++++ A++ D + Q+++ M +RA+ +
Sbjct: 9 QSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANI 68
Query: 70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L +
Sbjct: 69 VRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLIALRDEVSIDLY 128
Query: 130 XXXXHYYSS 138
YYSS
Sbjct: 129 ELEEEYYSS 137
>UNIPROTKB|E2QV33 [details] [associations]
symbol:MED22 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016592 "mediator complex" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] InterPro:IPR009332 Pfam:PF06179 GO:GO:0016592
GO:GO:0001104 PANTHER:PTHR12434 GeneTree:ENSGT00390000004339
OMA:VKSIMDN EMBL:AAEX03006771 Ensembl:ENSCAFT00000031418
Uniprot:E2QV33
Length = 204
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 42/129 (32%), Positives = 74/129 (57%)
Query: 19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
Q ++TL+Q R++ D+ SI+DNF++++ A++ D + Q+++ M +RA+ +
Sbjct: 9 QSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANI 68
Query: 70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L +
Sbjct: 69 VRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLIALRDEISIDLY 128
Query: 130 XXXXHYYSS 138
YYSS
Sbjct: 129 ELEEEYYSS 137
>UNIPROTKB|Q800L3 [details] [associations]
symbol:MED22 "Mediator of RNA polymerase II transcription
subunit 22" species:9031 "Gallus gallus" [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] InterPro:IPR009332
Pfam:PF06179 GO:GO:0016592 GO:GO:0001104 eggNOG:NOG271715 KO:K15139
PANTHER:PTHR12434 HOGENOM:HOG000006377 CTD:6837
GeneTree:ENSGT00390000004339 HOVERGEN:HBG058487 OMA:VKSIMDN
OrthoDB:EOG4X3H2K EMBL:AB050009 IPI:IPI00591244 IPI:IPI00818216
RefSeq:NP_001039295.1 UniGene:Gga.42364 STRING:Q800L3
Ensembl:ENSGALT00000005076 Ensembl:ENSGALT00000039339 GeneID:417159
KEGG:gga:417159 InParanoid:Q800L3 NextBio:20820507 Uniprot:Q800L3
Length = 203
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 41/131 (31%), Positives = 75/131 (57%)
Query: 19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
Q ++TL+Q R++ D+ SI+DNF++++ A++ D ++ Q+++ M +RA+ +
Sbjct: 9 QSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQSEQDNYEMHVRAANI 68
Query: 70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
V+A +SL+KLVS+LKQ I + F S+N+ + QR + E+ D+ L +
Sbjct: 69 VRAGESLMKLVSDLKQFLILNDFPSVNEAINQRNQQLRSLQEECDKKLIALRDEISIDLY 128
Query: 130 XXXXHYYSSGH 140
YYSS +
Sbjct: 129 ELEEEYYSSSY 139
>DICTYBASE|DDB_G0279087 [details] [associations]
symbol:med22 "putative mediator complex subunit 22"
species:44689 "Dictyostelium discoideum" [GO:0016592 "mediator
complex" evidence=IEA;ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009332 Pfam:PF06179 dictyBase:DDB_G0279087
GenomeReviews:CM000152_GR GO:GO:0006366 EMBL:AAFI02000027
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG271715 KO:K15139
PANTHER:PTHR12434 OMA:VKSIMDN RefSeq:XP_641857.1
EnsemblProtists:DDB0266933 GeneID:8621863 KEGG:ddi:DDB_G0279087
Uniprot:Q54XB0
Length = 149
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 36/142 (25%), Positives = 77/142 (54%)
Query: 1 MNKGAGSG-PTXXXXXXXXQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQES 59
MN G + P + Q+ +++++ I +++N+ ++ +++VNDP ++N+ E
Sbjct: 1 MNTGGNNSLPPQTRGEVLFRDQQFFQKQIDSKIMQLLENYHNIIKISKVNDP-LKNASEI 59
Query: 60 FMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLAR 119
+ ME R S M+ A + LLK++ ELKQ I + F+++ + V + F+++ E+T++ +
Sbjct: 60 YEMETRTSNMLNAGEGLLKIIEELKQNLILNDFSTMAEEVRIQNLVFHKENERTNKSIKL 119
Query: 120 IGXXXXXXXXXXXXHYYSSGHR 141
I YY+S ++
Sbjct: 120 ISEELSRSLKELEDEYYNSSYK 141
>UNIPROTKB|E7EN96 [details] [associations]
symbol:MED22 "Mediator of RNA polymerase II transcription
subunit 22" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR009332 Pfam:PF06179
EMBL:AL158826 GO:GO:0016592 GO:GO:0001104 PANTHER:PTHR12434
HGNC:HGNC:11477 IPI:IPI00947131 ProteinModelPortal:E7EN96
PRIDE:E7EN96 Ensembl:ENST00000494177 ArrayExpress:E7EN96
Bgee:E7EN96 Uniprot:E7EN96
Length = 135
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 41/127 (32%), Positives = 72/127 (56%)
Query: 19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
Q ++TL+Q R++ DI SI+DNF++++ A++ D + Q+++ M +RA+ +
Sbjct: 9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANI 68
Query: 70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L +
Sbjct: 69 VRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDEISIDLY 128
Query: 130 XXXXHYY 136
YY
Sbjct: 129 ELEEEYY 135
>ZFIN|ZDB-GENE-040625-156 [details] [associations]
symbol:med22 "mediator complex subunit 22"
species:7955 "Danio rerio" [GO:0016592 "mediator complex"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009332 Pfam:PF06179
ZFIN:ZDB-GENE-040625-156 GO:GO:0016592 GO:GO:0001104
PANTHER:PTHR12434 GeneTree:ENSGT00390000004339 EMBL:CU019641
EMBL:BX927184 Ensembl:ENSDART00000014347 Bgee:G1K2F7 Uniprot:G1K2F7
Length = 203
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 43/129 (33%), Positives = 71/129 (55%)
Query: 19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
Q ++TL+Q R++ DI SI+DNF++++ A+V D + Q+ F M +RA+ +
Sbjct: 9 QSKETLLQNYNKRLKDDIRSILDNFTEIIKTAKVEDETQVSRATQAEQDHFEMHVRAANI 68
Query: 70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
V+A +SL+KLVS+LKQ I + F S+N+ + R + E+ D+ L +
Sbjct: 69 VRAGESLMKLVSDLKQFLILNDFPSVNEAISLRNQQLRTLQEECDKKLISLRDEIAIDLY 128
Query: 130 XXXXHYYSS 138
YYSS
Sbjct: 129 ELEEEYYSS 137
>UNIPROTKB|E9PGW7 [details] [associations]
symbol:MED22 "Mediator of RNA polymerase II transcription
subunit 22" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR009332 Pfam:PF06179
EMBL:AL158826 GO:GO:0016592 GO:GO:0001104 PANTHER:PTHR12434
HGNC:HGNC:11477 IPI:IPI00645426 ProteinModelPortal:E9PGW7
Ensembl:ENST00000457204 ArrayExpress:E9PGW7 Bgee:E9PGW7
Uniprot:E9PGW7
Length = 111
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 36/103 (34%), Positives = 66/103 (64%)
Query: 19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
Q ++TL+Q R++ DI SI+DNF++++ A++ D + Q+++ M +RA+ +
Sbjct: 9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANI 68
Query: 70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEK 112
V+A +SL+KLVS+LKQ I + F S+N+ ++QR + E+
Sbjct: 69 VRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEE 111
>UNIPROTKB|Q5T8T7 [details] [associations]
symbol:MED22 "Mediator complex subunit 22" species:9606
"Homo sapiens" [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] InterPro:IPR009332 Pfam:PF06179 EMBL:AL158826
GO:GO:0016592 GO:GO:0001104 PANTHER:PTHR12434 HOGENOM:HOG000006377
HOVERGEN:HBG058487 UniGene:Hs.78354 HGNC:HGNC:11477 IPI:IPI00644426
STRING:Q5T8T7 Ensembl:ENST00000371999 Uniprot:Q5T8T7
Length = 134
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 44/130 (33%), Positives = 71/130 (54%)
Query: 19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPPV--RNSQ-ESFMMEMRASRMVQ 71
Q ++TL+Q R++ DI SI+DNF++++ A++ D R +Q E EM V+
Sbjct: 9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMH----VR 64
Query: 72 AADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXX 131
A +SL+KLVS+LKQ I + F S+N+ ++QR + E+ DR L +
Sbjct: 65 AGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDEISIDLYEL 124
Query: 132 XXHYYSSGHR 141
YYSS ++
Sbjct: 125 EEEYYSSRYK 134
>FB|FBgn0040339 [details] [associations]
symbol:MED22 "Mediator complex subunit 22" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA;IC] [GO:0016592 "mediator complex"
evidence=IDA] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA;IC] [GO:0007067 "mitosis" evidence=IMP]
InterPro:IPR009332 Pfam:PF06179 GO:GO:0007067 EMBL:AE014298
GO:GO:0006357 GO:GO:0016592 GO:GO:0001104 eggNOG:NOG271715
KO:K15139 PANTHER:PTHR12434 CTD:6837 GeneTree:ENSGT00390000004339
OMA:VKSIMDN EMBL:AL109630 EMBL:AY071113 RefSeq:NP_569870.1
UniGene:Dm.31032 DIP:DIP-23196N IntAct:Q9V439 MINT:MINT-335358
STRING:Q9V439 PaxDb:Q9V439 PRIDE:Q9V439 EnsemblMetazoa:FBtr0070165
GeneID:31038 KEGG:dme:Dmel_CG3034 FlyBase:FBgn0040339
InParanoid:Q9V439 OrthoDB:EOG4F4QTH PhylomeDB:Q9V439
GenomeRNAi:31038 NextBio:771638 Bgee:Q9V439 Uniprot:Q9V439
Length = 143
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 33/122 (27%), Positives = 65/122 (53%)
Query: 22 KTLMQRVETDIASIVDNFSQLVNVARVND-----PPVRNSQESFMMEMRASRMVQAADSL 76
K+ R++ D+ S+++NF +++ +AR + Q++ M++RA+ MV+A +SL
Sbjct: 19 KSYNARLKDDVRSMLENFEEILKLARRESHSQISKTTQCEQDALEMQVRAANMVRAGESL 78
Query: 77 LKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYY 136
+KLV++LKQ I + F S+N+ + + F + D+ L ++ YY
Sbjct: 79 MKLVADLKQYLILNDFHSVNEAITNNSQLFRNTQSECDKKLMKLRDEMAMDLYDLEEEYY 138
Query: 137 SS 138
+S
Sbjct: 139 TS 140
>FB|FBgn0052971 [details] [associations]
symbol:CG32971 species:7227 "Drosophila melanogaster"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR009332 Pfam:PF06179
EMBL:AE014134 GO:GO:0016592 GO:GO:0001104 eggNOG:NOG271715
KO:K15139 PANTHER:PTHR12434 GeneTree:ENSGT00390000004339
EMBL:BT024395 EMBL:BT126126 RefSeq:NP_001137823.1
RefSeq:NP_001137824.1 RefSeq:NP_788052.1 UniGene:Dm.34173
EnsemblMetazoa:FBtr0080621 EnsemblMetazoa:FBtr0114462
EnsemblMetazoa:FBtr0114463 GeneID:318271 KEGG:dme:Dmel_CG32971
UCSC:CG32971-RA FlyBase:FBgn0052971 InParanoid:Q86BK9 OMA:YRVENEI
GenomeRNAi:318271 NextBio:845369 Uniprot:Q86BK9
Length = 145
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 26/124 (20%), Positives = 64/124 (51%)
Query: 22 KTLMQRVETDIASIVDNFSQLVNVARVNDP-PVRNSQE----SFMMEMRASRMVQAADSL 76
K+ +++ ++ S++ NF +L+ + P + N E +F M++RA V+A ++L
Sbjct: 11 KSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEAL 70
Query: 77 LKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXXXXXXHYY 136
+KLV ++K+ I ++++ + +++++ + + + D+ L ++ YY
Sbjct: 71 IKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYY 130
Query: 137 S-SG 139
SG
Sbjct: 131 EKSG 134
>WB|WBGene00007022 [details] [associations]
symbol:mdt-22 species:6239 "Caenorhabditis elegans"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040017 "positive regulation of locomotion" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0030163 "protein
catabolic process" evidence=IMP] InterPro:IPR009332 Pfam:PF06179
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0010171 GO:GO:0040017 GO:GO:0040018
GO:GO:0040035 GO:GO:0030163 GO:GO:0016592 GO:GO:0001104 EMBL:Z49073
KO:K15139 PANTHER:PTHR12434 HOGENOM:HOG000006377
GeneTree:ENSGT00390000004339 PIR:T28127 RefSeq:NP_496216.1
ProteinModelPortal:Q23679 DIP:DIP-26478N IntAct:Q23679
MINT:MINT-1084333 STRING:Q23679 EnsemblMetazoa:ZK970.3
GeneID:174595 KEGG:cel:CELE_ZK970.3 UCSC:ZK970.3 CTD:174595
WormBase:ZK970.3 eggNOG:NOG264706 InParanoid:Q23679 OMA:HFLTHNI
NextBio:884702 Uniprot:Q23679
Length = 157
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 26 QRVETDIASIVDNFSQLVNVARVN-DPPVRNSQESFMME---------MRASRMVQAADS 75
+R+ +I S+ DNF ++ A+VN D +Q M E +RA MV+A+D
Sbjct: 29 RRLRDNIKSLNDNFFHIIQAAKVNPDDNAYKNQTGKMTEFYTTKNEMAVRAQLMVRASDE 88
Query: 76 LLKLVSELKQTAIFSGFASLNDHVEQ 101
LLKL ++LK+ I F L +++Q
Sbjct: 89 LLKLTADLKEFLILHDFHFLTHNIKQ 114
>ASPGD|ASPL0000007200 [details] [associations]
symbol:AN6109 species:162425 "Emericella nidulans"
[GO:0016592 "mediator complex" evidence=IEA] [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009332 Pfam:PF06179
EMBL:BN001301 EMBL:AACD01000104 GO:GO:0016592 GO:GO:0001104
OrthoDB:EOG4KH64T RefSeq:XP_663713.1 EnsemblFungi:CADANIAT00006903
GeneID:2871124 KEGG:ani:AN6109.2 eggNOG:NOG316065
HOGENOM:HOG000214251 OMA:ENIMATA Uniprot:Q5B021
Length = 117
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/103 (22%), Positives = 51/103 (49%)
Query: 22 KTLMQRVETDIASIVDNFSQLVNVARVNDPP-VRNSQESFMMEMRASRMVQAADSLLKLV 80
K + R+ TDI+ ++ F ++ A V + E++ +++ ++ +++AA+ +L L
Sbjct: 8 KNMHNRINTDISQLLQRFENIMATATVESTSHTTTAVETYQLDVESTALIRAAEDILSLT 67
Query: 81 SELKQTAIFSGFASLN-DHVEQRTNE-FNQQAEKTDRMLARIG 121
+K+T +F +L D E + E Q A +++ G
Sbjct: 68 RTMKETWLFGKLDTLGEDESETKRREGLEQDAAVIQKIIEDAG 110
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.124 0.328 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 148 128 0.00091 102 3 10 23 0.40 31
29 0.41 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 539 (57 KB)
Total size of DFA: 137 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 17.77u 0.10s 17.87t Elapsed: 00:00:03
Total cpu time: 17.77u 0.10s 17.87t Elapsed: 00:00:04
Start: Mon May 20 15:30:21 2013 End: Mon May 20 15:30:25 2013