Query 032025
Match_columns 148
No_of_seqs 79 out of 81
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:42:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h63_V Mediator of RNA polymer 100.0 5.7E-30 2E-34 196.6 3.7 123 15-140 7-130 (135)
2 3r84_B Mediator of RNA polymer 98.7 5.7E-08 1.9E-12 70.5 7.9 71 23-93 8-92 (92)
3 4gwp_D Mediator of RNA polymer 96.5 0.018 6.2E-07 43.4 8.9 74 23-96 5-92 (121)
4 1txp_A HnRNP C, heterogeneous 53.6 16 0.00055 20.9 3.3 24 19-42 2-25 (28)
5 1yke_B RNA polymerase II holoe 43.6 1E+02 0.0035 23.2 11.5 105 25-135 5-126 (151)
6 1i6z_A BAG-family molecular ch 40.7 1.2E+02 0.0039 23.0 10.3 59 68-126 67-125 (135)
7 3vmx_A Voltage-gated hydrogen 39.2 41 0.0014 21.4 3.8 35 89-123 6-40 (48)
8 2yy0_A C-MYC-binding protein; 38.9 22 0.00076 22.5 2.6 24 6-29 13-36 (53)
9 2olt_A Hypothetical protein; s 37.7 1.3E+02 0.0044 22.6 13.0 64 61-125 121-185 (227)
10 1h6g_A Alpha-1 catenin; adhesi 36.4 1.1E+02 0.0038 24.3 7.0 58 23-89 191-255 (256)
11 3he5_B Synzip2; heterodimeric 36.2 81 0.0028 19.9 5.1 28 103-130 19-46 (52)
12 3e35_A Uncharacterized protein 29.8 1.5E+02 0.0051 24.9 6.9 32 106-137 239-274 (325)
13 1sfc_D Protein (SNAP-25B), pro 28.6 1.3E+02 0.0046 20.1 6.9 48 71-123 29-76 (87)
14 3myf_A Sensor protein; HPT, hi 28.6 1.5E+02 0.0051 20.6 6.0 61 73-133 49-111 (119)
15 2d7c_C RAB11 family-interactin 26.9 81 0.0028 19.3 3.6 24 17-40 9-32 (42)
16 2zqm_A Prefoldin beta subunit 26.9 1.5E+02 0.005 20.0 6.0 48 85-136 61-108 (117)
17 4gwp_A Mediator of RNA polymer 26.7 1E+02 0.0035 22.7 4.8 42 25-66 13-54 (115)
18 3lay_A Zinc resistance-associa 26.2 1.7E+02 0.0059 22.4 6.3 40 100-139 70-109 (175)
19 3oja_B Anopheles plasmodium-re 26.1 3E+02 0.01 23.3 16.8 34 101-134 544-580 (597)
20 3b5n_D Protein transport prote 25.9 1.4E+02 0.0047 19.3 6.9 45 72-121 11-55 (64)
21 1l4a_D S-SNAP25 fusion protein 25.7 1.3E+02 0.0045 20.3 5.0 48 70-122 29-76 (87)
22 2l7a_A Talin-1; vinculin, bund 25.6 2E+02 0.007 21.2 7.5 55 23-85 71-126 (131)
23 1gl2_D Syntaxin 8, vesicle tra 25.1 1.3E+02 0.0045 18.8 6.9 46 73-123 11-56 (65)
24 2ke4_A CDC42-interacting prote 24.9 1.8E+02 0.0062 20.3 7.1 53 70-133 35-90 (98)
25 1n7s_D SNAP-25A; neuronal snar 23.7 1.4E+02 0.0048 18.7 6.9 47 72-123 11-57 (66)
26 3oiq_B DNA polymerase alpha ca 23.3 1.1E+02 0.0039 18.2 3.6 19 23-41 7-25 (36)
27 3vem_A Helicase protein MOM1; 22.9 1.9E+02 0.0063 21.3 5.5 24 110-133 74-97 (115)
28 3l8a_A METC, putative aminotra 22.7 1.2E+02 0.0042 24.1 5.0 36 10-45 307-342 (421)
29 3oa7_A Head morphogenesis prot 22.1 44 0.0015 27.0 2.2 27 18-44 24-51 (206)
30 3iqt_A Signal transduction his 21.2 1.4E+02 0.0047 21.1 4.5 60 74-133 59-120 (123)
31 3u66_A SCIP/TSSL, putative typ 20.6 1.4E+02 0.0048 22.8 4.7 44 68-111 8-51 (183)
32 1dly_A Hemoglobin; oxygen stor 20.5 51 0.0017 24.7 2.1 24 22-45 43-68 (164)
33 1fxk_A Prefoldin; archaeal pro 20.1 1.9E+02 0.0065 19.2 4.9 47 86-136 57-103 (107)
No 1
>4h63_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=99.96 E-value=5.7e-30 Score=196.65 Aligned_cols=123 Identities=17% Similarity=0.256 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCCCC-ccchHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHhhcCch
Q 032025 15 AAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPP-VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFA 93 (148)
Q Consensus 15 ~~~~q~~~sl~~Rl~~dI~slldnF~~Iik~Akv~d~~-~~~~~e~fem~vrAa~mVrAaEsLLkLvseLKq~liL~Df~ 93 (148)
++..|+.++|++|||.||.+|++||.+||++|+|++++ +..++++|+|++|+++||||||+||+||++||++||||||+
T Consensus 7 ~~l~~k~~~l~~rid~~v~~ll~~f~~iv~lA~v~~~~~~~~A~e~~~~~~~~~~~vra~e~LL~L~r~lKe~wllg~l~ 86 (135)
T 4h63_V 7 RQLVQRTNTLNSSIDNATLTILSRFQDILDIAINEGKDKYTVAPEVYQIECHTVSMVRAVEQLLDVSRQIKSYWLTNSLS 86 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 56788999999999999999999999999999999864 77799999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 032025 94 SLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYYSSGH 140 (148)
Q Consensus 94 slne~i~~~~~~l~~~~e~~d~~L~~l~del~~~L~eLEeeYYsS~~ 140 (148)
++|+.++....++++..+++++....|.+ ..+.++|..+++..-
T Consensus 87 ~~~e~~~~~e~~~e~~~~~~~~l~~~l~~---~~l~e~~~~e~se~~ 130 (135)
T 4h63_V 87 TSFPTVDYSEPDLEKVKRTLTKLQNHLLE---VSLIEPEASETTEAP 130 (135)
T ss_dssp SCCCCCCCSCCCHHHHHHHHHHHHTTTCC---CCSCC----------
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHH---HhccCccccccCCCC
Confidence 99999999998898888888888888777 556677766665433
No 2
>3r84_B Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=98.70 E-value=5.7e-08 Score=70.49 Aligned_cols=71 Identities=15% Similarity=0.345 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCCC------C-----ccc--hHHH-HHHHhHHHHHHHhHHHHHHHHHHHHHHHh
Q 032025 23 TLMQRVETDIASIVDNFSQLVNVARVNDP------P-----VRN--SQES-FMMEMRASRMVQAADSLLKLVSELKQTAI 88 (148)
Q Consensus 23 sl~~Rl~~dI~slldnF~~Iik~Akv~d~------~-----~~~--~~e~-fem~vrAa~mVrAaEsLLkLvseLKq~li 88 (148)
+|..|||..+..|...|.+||++|.|.+. . ... +.+. ..++-.+.-|||-+++||.|++.||+.|+
T Consensus 8 ~LleKLdqttE~Ls~Kl~eli~lssi~~~~~~~~d~~~~~~S~~svaT~s~~Mvn~qt~qLIrgvQDLL~lTRsirEkWl 87 (92)
T 3r84_B 8 ALYEKLEQTRTILSVKLAELINITTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWL 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBCCCCC--------CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhccccccccccccchhHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999921 1 111 2222 44457788999999999999999999999
Q ss_pred hcCch
Q 032025 89 FSGFA 93 (148)
Q Consensus 89 L~Df~ 93 (148)
||..|
T Consensus 88 L~QIP 92 (92)
T 3r84_B 88 LNQIP 92 (92)
T ss_dssp HHBCC
T ss_pred hccCC
Confidence 99865
No 3
>4gwp_D Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 3rj1_D 4gwq_D
Probab=96.49 E-value=0.018 Score=43.38 Aligned_cols=74 Identities=14% Similarity=0.316 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCCCC--c-----cc----hH-HH--HHHHhHHHHHHHhHHHHHHHHHHHHHHHh
Q 032025 23 TLMQRVETDIASIVDNFSQLVNVARVNDPP--V-----RN----SQ-ES--FMMEMRASRMVQAADSLLKLVSELKQTAI 88 (148)
Q Consensus 23 sl~~Rl~~dI~slldnF~~Iik~Akv~d~~--~-----~~----~~-e~--fem~vrAa~mVrAaEsLLkLvseLKq~li 88 (148)
.|..||+.-+..|--...++||++.|.++. . +. +. -+ -.+.-.+.-+|+...+||-|++.+|+-|+
T Consensus 5 ~L~eKLdqTtE~LS~kL~eLiklssi~~~~~d~e~~~~~~~s~~siaTt~v~MvN~qTmQLIKgvQDLLvlTRsIREKWl 84 (121)
T 4gwp_D 5 ALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWL 84 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhccCCCCCcccccccccccceeeecceeeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999999999999997641 1 11 11 11 23344444569999999999999999999
Q ss_pred hcCchhhh
Q 032025 89 FSGFASLN 96 (148)
Q Consensus 89 L~Df~sln 96 (148)
||..|...
T Consensus 85 LnQIP~~~ 92 (121)
T 4gwp_D 85 LNQIPVTE 92 (121)
T ss_dssp TCCCCCCS
T ss_pred HhcCCccc
Confidence 99999443
No 4
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=53.59 E-value=16 Score=20.90 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 032025 19 QKQKTLMQRVETDIASIVDNFSQL 42 (148)
Q Consensus 19 q~~~sl~~Rl~~dI~slldnF~~I 42 (148)
|.-+.=+..++..|.+|++|.+.|
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455678999999999998764
No 5
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=43.57 E-value=1e+02 Score=23.17 Aligned_cols=105 Identities=10% Similarity=0.237 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHh-------hccCC-CC-c------cchHHHHHHHhH--HHHHHHhHHHHHHHHHHHHHHH
Q 032025 25 MQRVETDIASIVDNFSQLVNV-------ARVND-PP-V------RNSQESFMMEMR--ASRMVQAADSLLKLVSELKQTA 87 (148)
Q Consensus 25 ~~Rl~~dI~slldnF~~Iik~-------Akv~d-~~-~------~~~~e~fem~vr--Aa~mVrAaEsLLkLvseLKq~l 87 (148)
.+.|.+-|++|.+.|.+=|.. +..++ ++ . ...-+.|...+. |..||..+-.+-.||+.|
T Consensus 5 LTQLQd~ldqLa~~f~nsig~Lq~~app~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~kakqIe~LIdsL---- 80 (151)
T 1yke_B 5 LTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSL---- 80 (151)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHTTGGGGCCC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 467888899999999887754 22321 11 0 012234433333 445666666555555543
Q ss_pred hhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032025 88 IFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHY 135 (148)
Q Consensus 88 iL~Df~slne~i~~~~~~l~~~~e~~d~~L~~l~del~~~L~eLEeeY 135 (148)
=++.+-.+.-..+...|..+.++..+.+.....+....|..+++-+
T Consensus 81 --Pg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l 126 (151)
T 1yke_B 81 --PGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLI 126 (151)
T ss_dssp --TTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334555666667777777788888888888888888887754
No 6
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=40.66 E-value=1.2e+02 Score=22.95 Aligned_cols=59 Identities=10% Similarity=0.165 Sum_probs=45.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032025 68 RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAA 126 (148)
Q Consensus 68 ~mVrAaEsLLkLvseLKq~liL~Df~slne~i~~~~~~l~~~~e~~d~~L~~l~del~~ 126 (148)
.+.-.+|.||++...|=..-|=.+|...=.-+..-...++..-..||..+..|.+++..
T Consensus 67 rik~~~E~~Mk~LE~LDs~~ip~~~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~~~~~~~ 125 (135)
T 1i6z_A 67 KVKATIEQFMKILEEIDTMVLPEQFKDSRLKRKNLVKKVQVFLAECDTVEQYICQETER 125 (135)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666999999999998888878887555555555567777778999999999988764
No 7
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=39.18 E-value=41 Score=21.37 Aligned_cols=35 Identities=6% Similarity=0.216 Sum_probs=27.6
Q ss_pred hcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032025 89 FSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEE 123 (148)
Q Consensus 89 L~Df~slne~i~~~~~~l~~~~e~~d~~L~~l~de 123 (148)
|+++-.+|+...++..+|...+.+.++.+.+++.=
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44555678999999999998888888888877643
No 8
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.93 E-value=22 Score=22.54 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=15.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHH
Q 032025 6 GSGPTAAAAAAAAQKQKTLMQRVE 29 (148)
Q Consensus 6 ~~~~~~~~~~~~~q~~~sl~~Rl~ 29 (148)
|+||+.+-.-+.-+.-..|+.|+.
T Consensus 13 ~~~p~~~d~eaLk~E~~eLk~k~~ 36 (53)
T 2yy0_A 13 AATPENPEIELLRLELAEMKEKYE 36 (53)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHHHHHHHH
Confidence 378998888887777767776654
No 9
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=37.73 E-value=1.3e+02 Score=22.64 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=41.7
Q ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHHHhhcCchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032025 61 MMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLN-DHVEQRTNEFNQQAEKTDRMLARIGEEAA 125 (148)
Q Consensus 61 em~vrAa~mVrAaEsLLkLvseLKq~liL~Df~sln-e~i~~~~~~l~~~~e~~d~~L~~l~del~ 125 (148)
++.--+..++++++.+.+.+.+|+.++ -++|..-+ +.+..-..++.....++|.....++..+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~ai~~l~~l~-e~~~~~~~~~~~~~~~~~i~~lE~~~D~l~~~~~~~Lf 185 (227)
T 2olt_A 121 PFIAYLQRCIDAVGLAQQVINELDDLL-EAGFRGREVDFVAKMINELDIIEEDTDDLQIQLRRQLF 185 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457778899999999999995544 55675332 34455555666666777776666666444
No 10
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=36.42 E-value=1.1e+02 Score=24.31 Aligned_cols=58 Identities=5% Similarity=0.234 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHh-HHHHHHhhcc-----CCCC-ccchHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHhh
Q 032025 23 TLMQRVETDIASIVDN-FSQLVNVARV-----NDPP-VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIF 89 (148)
Q Consensus 23 sl~~Rl~~dI~slldn-F~~Iik~Akv-----~d~~-~~~~~e~fem~vrAa~mVrAaEsLLkLvseLKq~liL 89 (148)
.|.+||...++.|-+. .-.+|..||. ...| -...+. .+..+++.|+.-|++++...+.
T Consensus 191 ~~~~~v~~a~~~L~~a~~p~mv~~ak~~~~~~a~np~d~~~~~---------~~~~a~~~L~~~v~~vr~av~~ 255 (256)
T 1h6g_A 191 VYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDEN---------EFIDASRLVYDGIRDIRKAVLM 255 (256)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSSCCCCCHH---------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHH---------HHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999988886 5557776665 3222 222333 3488999999999999988764
No 11
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.21 E-value=81 Score=19.90 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032025 103 TNEFNQQAEKTDRMLARIGEEAAASLKE 130 (148)
Q Consensus 103 ~~~l~~~~e~~d~~L~~l~del~~~L~e 130 (148)
+-++......+.+.+..+|||++..-.|
T Consensus 19 nlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 19 NLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 3455666667778888899998875444
No 12
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=29.82 E-value=1.5e+02 Score=24.86 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Q 032025 106 FNQQAEKTDRMLARIG----EEAAASLKELEAHYYS 137 (148)
Q Consensus 106 l~~~~e~~d~~L~~l~----del~~~L~eLEeeYYs 137 (148)
|.+..+++..++..+. +|++.....||+.|=.
T Consensus 239 L~e~Ae~~e~~i~el~~~~~~E~~~~V~~LE~~yD~ 274 (325)
T 3e35_A 239 LRTDAHRTQTEIDRQIQEGDEELIALVQGLEHQYDA 274 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Confidence 3344444444444443 4599999999998754
No 13
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=28.64 E-value=1.3e+02 Score=20.10 Aligned_cols=48 Identities=17% Similarity=0.419 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032025 71 QAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEE 123 (148)
Q Consensus 71 rAaEsLLkLvseLKq~liL~Df~slne~i~~~~~~l~~~~e~~d~~L~~l~de 123 (148)
+.-+.|-..|..||...+ .|+.+++.++..|....++.|+.-.+|+.-
T Consensus 29 ~~Ld~Ls~~v~rLk~la~-----~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~ 76 (87)
T 1sfc_D 29 ENLEQVSGIIGNLRHMAL-----DMGNEIDTQNRQIDRIMEKADSNKTRIDEA 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456888899999999886 689999999998888888877776666554
No 14
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=28.64 E-value=1.5e+02 Score=20.64 Aligned_cols=61 Identities=10% Similarity=0.235 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 032025 73 ADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQA--EKTDRMLARIGEEAAASLKELEA 133 (148)
Q Consensus 73 aEsLLkLvseLKq~liL~Df~slne~i~~~~~~l~~~~--e~~d~~L~~l~del~~~L~eLEe 133 (148)
.+.|..++|.||=..-....+.+-.....-...+++.. +.+...+..+.+++...+..++.
T Consensus 49 ~~~l~~~aHkLkGaa~~~Ga~~L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~ 111 (119)
T 3myf_A 49 QATMLSTIHKLHGASCYCGVPTTQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQ 111 (119)
T ss_dssp HHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999998887766666655432 34556677777777777766665
No 15
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=26.93 E-value=81 Score=19.30 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 032025 17 AAQKQKTLMQRVETDIASIVDNFS 40 (148)
Q Consensus 17 ~~q~~~sl~~Rl~~dI~slldnF~ 40 (148)
+.++|+..++||.+-|.+|+-+-.
T Consensus 9 ~l~~qee~n~~Le~YID~LL~~Vm 32 (42)
T 2d7c_C 9 AIQKQEEINFRLQDYIDRIIVAIM 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888899999999999986643
No 16
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.92 E-value=1.5e+02 Score=20.01 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=33.6
Q ss_pred HHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032025 85 QTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYY 136 (148)
Q Consensus 85 q~liL~Df~slne~i~~~~~~l~~~~e~~d~~L~~l~del~~~L~eLEeeYY 136 (148)
..+|..|...+...+..+...+....+.+..++..+..++. +|+.++|
T Consensus 61 ~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~----~lk~~l~ 108 (117)
T 2zqm_A 61 TLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLK----ELTAQIQ 108 (117)
T ss_dssp TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 34666777888888888888888777777777776666654 4444444
No 17
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=26.74 E-value=1e+02 Score=22.73 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhccCCCCccchHHHHHHHhHH
Q 032025 25 MQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRA 66 (148)
Q Consensus 25 ~~Rl~~dI~slldnF~~Iik~Akv~d~~~~~~~e~fem~vrA 66 (148)
+..+|..|-+|+++|..++.+=.-........++.|+-+++.
T Consensus 13 L~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~ 54 (115)
T 4gwp_A 13 LNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQ 54 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHH
Confidence 457999999999999999976432111123346777777653
No 18
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.23 E-value=1.7e+02 Score=22.40 Aligned_cols=40 Identities=8% Similarity=0.018 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 032025 100 EQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYYSSG 139 (148)
Q Consensus 100 ~~~~~~l~~~~e~~d~~L~~l~del~~~L~eLEeeYYsS~ 139 (148)
+.+..+++...++.......+|+++.+.-.||...+.+..
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~ 109 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASS 109 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445556666677777777778888888888877766543
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.11 E-value=3e+02 Score=23.29 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 032025 101 QRTNEFNQQAEKTDRMLARIGEEAAAS---LKELEAH 134 (148)
Q Consensus 101 ~~~~~l~~~~e~~d~~L~~l~del~~~---L~eLEee 134 (148)
+....++...++..+++..+++|+... +++||+.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555666666655443 5666654
No 20
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=25.90 E-value=1.4e+02 Score=19.26 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032025 72 AADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIG 121 (148)
Q Consensus 72 AaEsLLkLvseLKq~liL~Df~slne~i~~~~~~l~~~~e~~d~~L~~l~ 121 (148)
--+.|-++++.||...+ .+|.+|+.++..+....++.|+.-.+|.
T Consensus 11 nLd~l~~~~~rlk~ma~-----~mg~Eid~QN~~ldrI~~k~d~~d~ri~ 55 (64)
T 3b5n_D 11 NLDQIQQVSNRLKKMAL-----TTGKELDSQQKRLNNIEESTDDLDINLH 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999998876 6899999999999888887777655543
No 21
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=25.69 E-value=1.3e+02 Score=20.32 Aligned_cols=48 Identities=15% Similarity=0.347 Sum_probs=38.6
Q ss_pred HHhHHHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032025 70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGE 122 (148)
Q Consensus 70 VrAaEsLLkLvseLKq~liL~Df~slne~i~~~~~~l~~~~e~~d~~L~~l~d 122 (148)
=..-+.|-..|..||...+ .++.+++.++..+....++.|+.-.+|+.
T Consensus 29 D~~Ld~ls~~l~rLk~mA~-----~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~ 76 (87)
T 1l4a_D 29 ENNMKEVSSMIGNLRNMAI-----DMGNEIGSQNRQVDRIQQKAESNESRIDE 76 (87)
T ss_dssp HHHHHHHHTTHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTHHHHTH
T ss_pred HHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999876 68999999999998888888776666654
No 22
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=25.55 E-value=2e+02 Score=21.18 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCCC-CccchHHHHHHHhHHHHHHHhHHHHHHHHHHHHH
Q 032025 23 TLMQRVETDIASIVDNFSQLVNVARVNDP-PVRNSQESFMMEMRASRMVQAADSLLKLVSELKQ 85 (148)
Q Consensus 23 sl~~Rl~~dI~slldnF~~Iik~Akv~d~-~~~~~~e~fem~vrAa~mVrAaEsLLkLvseLKq 85 (148)
.+.+||.+..+.|-+.-..+|..||--.. |.. .....++..|+|.|+..|...=.
T Consensus 71 ~~~~rLl~AAk~La~At~~MVeaAK~~A~NP~d--------~~~q~~Lr~Aae~L~~at~~~~~ 126 (131)
T 2l7a_A 71 ENSRKLLSAAKILADATAKMVEAAKGAAAHPDS--------EEQQQRLREAAEGLRMATNAAAQ 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999884210 111 11234678899999998887643
No 23
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.10 E-value=1.3e+02 Score=18.81 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032025 73 ADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEE 123 (148)
Q Consensus 73 aEsLLkLvseLKq~liL~Df~slne~i~~~~~~l~~~~e~~d~~L~~l~de 123 (148)
-+.|-..|+.||...+ .|+++++.++..+....++.|+.-.+|+.-
T Consensus 11 Ld~L~~~v~~lk~~a~-----~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~ 56 (65)
T 1gl2_D 11 LDALSSIISRQKQMGQ-----EIGNELDEQNEIIDDLANLVENTDEKLRTE 56 (65)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888999998876 689999999998888777777766666543
No 24
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.95 E-value=1.8e+02 Score=20.33 Aligned_cols=53 Identities=28% Similarity=0.265 Sum_probs=37.2
Q ss_pred HHhHHHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 032025 70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEA---AASLKELEA 133 (148)
Q Consensus 70 VrAaEsLLkLvseLKq~liL~Df~slne~i~~~~~~l~~~~e~~d~~L~~l~del---~~~L~eLEe 133 (148)
.++=|+|+||..-.-+.==|+|-.++-. +-.+++.+|..++.++ ...|-|||.
T Consensus 35 ~~~regl~Km~~vY~~nP~~GD~~s~~~-----------~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 35 VDQREALKKMKDVYEKTPQMGDPASLEP-----------QIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHTHHHHHHHHHHHCGGGCCGGGSHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667899999999999999999999833 3345556666666665 344555553
No 25
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=23.72 E-value=1.4e+02 Score=18.70 Aligned_cols=47 Identities=17% Similarity=0.416 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032025 72 AADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEE 123 (148)
Q Consensus 72 AaEsLLkLvseLKq~liL~Df~slne~i~~~~~~l~~~~e~~d~~L~~l~de 123 (148)
.-+.|-..|+.||...+ .|+.+++.++..+.....+.++.-.+|+.-
T Consensus 11 ~Ld~L~~~v~~lk~la~-----~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~ 57 (66)
T 1n7s_D 11 NLEQVSGIIGNLRHMAL-----DMGNEIDTQNRQIDRIMEKADSNKTRIDEA 57 (66)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45778888999998876 689999999998888877777766666543
No 26
>3oiq_B DNA polymerase alpha catalytic subunit A; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae}
Probab=23.27 E-value=1.1e+02 Score=18.17 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 032025 23 TLMQRVETDIASIVDNFSQ 41 (148)
Q Consensus 23 sl~~Rl~~dI~slldnF~~ 41 (148)
+-+.|..+||.+|+|..++
T Consensus 7 ~~K~R~~nDvq~Ll~DVEN 25 (36)
T 3oiq_B 7 SRKLRYANDVQDLLDDVEN 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhc
Confidence 3455999999999998665
No 27
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=22.89 E-value=1.9e+02 Score=21.33 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032025 110 AEKTDRMLARIGEEAAASLKELEA 133 (148)
Q Consensus 110 ~e~~d~~L~~l~del~~~L~eLEe 133 (148)
..++|.+|..+-.+...--+++|.
T Consensus 74 k~KYD~~lqe~ese~~~kkK~le~ 97 (115)
T 3vem_A 74 QAEFRRKFHEVEAEHNTRTTKIEK 97 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 28
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=22.71 E-value=1.2e+02 Score=24.13 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 032025 10 TAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNV 45 (148)
Q Consensus 10 ~~~~~~~~~q~~~sl~~Rl~~dI~slldnF~~Iik~ 45 (148)
..+|+.++....+.|..++...+..+.+.|.+.++.
T Consensus 307 ~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~ 342 (421)
T 3l8a_A 307 GMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEA 342 (421)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444554544566677767776666666666643
No 29
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=22.11 E-value=44 Score=26.99 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=21.0
Q ss_pred HHHHH-HHHHHHHHHHHHHHHhHHHHHH
Q 032025 18 AQKQK-TLMQRVETDIASIVDNFSQLVN 44 (148)
Q Consensus 18 ~q~~~-sl~~Rl~~dI~slldnF~~Iik 44 (148)
+|+.. ...++|+.+..+.+.+|.++-+
T Consensus 24 ~~~~~~~~~~~~~a~~~s~~s~~~dl~~ 51 (206)
T 3oa7_A 24 AQSERTEALQQLRVNYGSFVSEYNDLTK 51 (206)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 5678899999999999999864
No 30
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=21.18 E-value=1.4e+02 Score=21.11 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 032025 74 DSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQA--EKTDRMLARIGEEAAASLKELEA 133 (148)
Q Consensus 74 EsLLkLvseLKq~liL~Df~slne~i~~~~~~l~~~~--e~~d~~L~~l~del~~~L~eLEe 133 (148)
+.|..++|.||=..-....+.+-.....=...+++.. +.+...+..+.+||...+.++.+
T Consensus 59 ~~l~~~aHkLkGaa~~~Ga~~L~~~c~~LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~ 120 (123)
T 3iqt_A 59 EGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASK 120 (123)
T ss_dssp TTHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999988877666555555432 35667788888888888877664
No 31
>3u66_A SCIP/TSSL, putative type VI secretion protein; duble helical bundle, protein secretion, attached to inner M unknown function; 2.63A {Escherichia coli}
Probab=20.64 E-value=1.4e+02 Score=22.83 Aligned_cols=44 Identities=16% Similarity=0.035 Sum_probs=38.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHH
Q 032025 68 RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAE 111 (148)
Q Consensus 68 ~mVrAaEsLLkLvseLKq~liL~Df~slne~i~~~~~~l~~~~e 111 (148)
.|+.++..++.+|..|+...-..|...+-+.+......+++...
T Consensus 8 ~i~~l~~~~l~lv~~Lr~~~~~~d~~~lr~~~~~~i~~~e~~~~ 51 (183)
T 3u66_A 8 RAEQIFYPGWLMVSQLRSGQPVEDGKALYRRACQLVKQAREELA 51 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999889999888888888888876543
No 32
>1dly_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.80A {Chlamydomonas eugametos} SCOP: a.1.1.1 PDB: 1uvx_A*
Probab=20.46 E-value=51 Score=24.73 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=20.8
Q ss_pred HHHHHHH--HHHHHHHHHhHHHHHHh
Q 032025 22 KTLMQRV--ETDIASIVDNFSQLVNV 45 (148)
Q Consensus 22 ~sl~~Rl--~~dI~slldnF~~Iik~ 45 (148)
.++-.|| .+.|..|++.|-+.|..
T Consensus 43 ~slYe~lGG~~~I~~lVd~FY~rv~~ 68 (164)
T 1dly_A 43 SSLFAKLGGREAVEAAVDKFYNKIVA 68 (164)
T ss_dssp -CHHHHTTHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 4888999 89999999999998765
No 33
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.05 E-value=1.9e+02 Score=19.16 Aligned_cols=47 Identities=11% Similarity=0.222 Sum_probs=31.2
Q ss_pred HHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032025 86 TAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYY 136 (148)
Q Consensus 86 ~liL~Df~slne~i~~~~~~l~~~~e~~d~~L~~l~del~~~L~eLEeeYY 136 (148)
.+|..|...+...+..+...+....+.++.++..+..++ .+|+.+.|
T Consensus 57 vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l----~~lk~~l~ 103 (107)
T 1fxk_A 57 ILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKL----QEMQVNIQ 103 (107)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 356667777777777777777777777777766665554 44555554
Done!