BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032027
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 129 bits (323), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 1 MLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNN-DTSIFACLLSTRAGGQGLNLTG 59
MLDIL L + G+ ++RLDG+ +R+ +D FN+ D++ F LLSTRAGG G+NL
Sbjct: 584 MLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT 643
Query: 60 ADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAA 119
ADTVVI D D+NPQ D QA R HRIGQ V +YRLV+K TV+E V E A++K+IL+ A
Sbjct: 644 ADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYA 703
Query: 120 VLESGVEVDNEGDTSDKTMGEILSSIL 146
++ GV N+ ++ LS+IL
Sbjct: 704 IISLGVTDGNKYTKKNEPNAGELSAIL 730
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 79/142 (55%), Gaps = 8/142 (5%)
Query: 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSI-FACLLSTRAGGQGLNLTGA 60
LD+ E Y RLDG+ + +R IV+ FNN +S F +LS++AGG GLNL GA
Sbjct: 429 LDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGA 488
Query: 61 DTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAV 120
+ +V+ D D+NP D QA R R GQ + IYRL++ GT++E + + K L + V
Sbjct: 489 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCV 548
Query: 121 LESGVEVDNEGDTSDK-TMGEI 141
VD E D ++GE+
Sbjct: 549 ------VDEEQDVERHFSLGEL 564
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%)
Query: 19 LDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQA 78
L G ER I+ F N+ S+ +LS +AGG G+NLT A+ V+ D +NP ++ QA
Sbjct: 143 LYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQA 202
Query: 79 EDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAVLESG 124
DR +RIGQTR V +++L++ GT++E + ++ K L ++ SG
Sbjct: 203 TDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 248
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
Length = 500
Score = 80.1 bits (196), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 65/106 (61%)
Query: 19 LDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQA 78
L G ER I+ F N+ S+ +LS +AGG G+NLT A+ V+ D +NP ++ QA
Sbjct: 372 LYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQA 431
Query: 79 EDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAVLESG 124
DR +RIGQTR V +++L++ GT++E + ++ K L ++ SG
Sbjct: 432 TDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 477
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 80.1 bits (196), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 65/106 (61%)
Query: 19 LDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQA 78
L G ER I+ F N+ S+ +LS +AGG G+NLT A+ V+ D +NP ++ QA
Sbjct: 372 LYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQA 431
Query: 79 EDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAVLESG 124
DR +RIGQTR V +++L++ GT++E + ++ K L ++ SG
Sbjct: 432 TDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 477
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 35.4 bits (80), Expect = 0.011, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 30/70 (42%)
Query: 25 VTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHR 84
+ ER F + + LL + G +G N A V D+ FNP + Q R R
Sbjct: 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHXVXFDLPFNPDLLEQRIGRLDR 599
Query: 85 IGQTRPVTIY 94
IGQ + I+
Sbjct: 600 IGQAHDIQIH 609
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 33.5 bits (75), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 13 GVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNP 72
G T L G+ + +R AI+D+F TS L++T +G++++ + VV +DM +
Sbjct: 381 GHTVACLTGNLEGAQRDAIMDSFRVGTS--KVLVTTNVIARGIDVSQVNLVVNYDMPLDQ 438
Query: 73 QIDRQAEDRCHRIGQT 88
+ HRIG+T
Sbjct: 439 AGRPDPQTYLHRIGRT 454
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 4 ILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSI-FACLLS 47
I+E+ D+ V +R +D Q +ER+ + F N TSI F LS
Sbjct: 177 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 221
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 4 ILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSI-FACLLS 47
I+E+ D+ V +R +D Q +ER+ + F N TSI F LS
Sbjct: 185 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 229
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 4 ILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSI-FACLLS 47
I+E+ D+ V +R +D Q +ER+ + F N TSI F LS
Sbjct: 183 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 227
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 4 ILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSI 41
I+E+ D+ V +R +D Q +ER+ + F N TSI
Sbjct: 183 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSI 220
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 4 ILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSI-FACLLS 47
I+E+ D+ V +R +D Q +ER+ + F N TSI F LS
Sbjct: 157 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 201
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 29.6 bits (65), Expect = 0.70, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 19 LDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQA 78
L G V +R A+++ F L++T +G+++ V+ D+ + +
Sbjct: 363 LSGEMMVEQRAAVIERFREGKE--KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN 420
Query: 79 EDRCHRIGQT 88
E HRIG+T
Sbjct: 421 ETYLHRIGRT 430
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 19 LDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQA 78
L G V +R A+++ F L++T +G+++ V+ D+ + +
Sbjct: 296 LSGEMMVEQRAAVIERFREGKE--KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN 353
Query: 79 EDRCHRIGQT 88
E HRIG+T
Sbjct: 354 ETYLHRIGRT 363
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 19 LDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQA 78
L G V +R A+++ F L++T +G+++ V+ D+ + +
Sbjct: 333 LSGEMMVEQRAAVIERFREGKE--KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN 390
Query: 79 EDRCHRIGQT 88
E HRIG+T
Sbjct: 391 ETYLHRIGRT 400
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 19 LDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQA 78
L G V +R A+++ F L++T +G+++ V+ D+ + +
Sbjct: 312 LSGEMMVEQRAAVIERFREGKE--KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN 369
Query: 79 EDRCHRIGQT 88
E HRIG+T
Sbjct: 370 ETYLHRIGRT 379
>pdb|1PXG|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) D280e Complexed With Preq1
Length = 382
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 267 IVGAVERGIDMFECVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 318
>pdb|2NQZ|A Chain A, Trna-Guanine Transglycosylase (Tgt) Mutant In Complex With
7-Deaza-7- Aminomethyl-Guanine
Length = 385
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 267 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 318
>pdb|2NSO|A Chain A, Trna-Gunanine-Transglycosylase (Tgt) Mutant Y106f, C158v,
A232s, V233g- Apo-Structure
pdb|3BLL|A Chain A, Tgt Mutant In Complex With Boc-Preq1
pdb|3BLO|A Chain A, Tgt Mutant In Complex With Queuine
Length = 386
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 268 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 319
>pdb|4GCX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
In Complex With Preq1
pdb|4H6E|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
Apo Structure
Length = 386
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 268 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 319
>pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studies Of Zymomonas
Mobilis Trna- Guanine Transglycosylase To Elucidate The
Role Of Serine 103 For Enzymatic Activity
Length = 386
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 268 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 319
>pdb|4GD0|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant
pdb|4H7Z|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant In
Complex With Guanine
pdb|4HVX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant In
Complex With Queuine
Length = 386
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 268 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 319
>pdb|3HFY|A Chain A, Mutant Of Trna-Guanine Transglycosylase (K52m)
Length = 386
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 268 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 319
>pdb|1ENU|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1F3E|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1K4G|A Chain A, Crystal Structure Of Trna-guanine Transglycosylase (tgt)
Complexed With
2,
6-diamino-8-(1h-imidazol-2-ylsulfanylmethyl)-3h-
quinazoline-4- One
pdb|1K4H|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
Complexed With
2,6-Diamino-8-Propylsulfanylmethyl-3h-Quinazoline-4-One
pdb|1N2V|A Chain A, Crystal Structure Of Tgt In Complex With
2-Butyl-5,6-Dihydro-1h-
Imidazo[4,5-D]pyridazine-4,7-Dione
pdb|1Q2R|A Chain A, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|B Chain B, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|C Chain C, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|D Chain D, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|A Chain A, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|B Chain B, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|C Chain C, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|D Chain D, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1P0B|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis Complexed With Archaeosine
Precursor, Preq0
pdb|1P0D|A Chain A, Crystal Structure Of Zymomonas Mobilis Trna-Guanine
Transglycosylase (Tgt) Crystallised At Ph 5.5
pdb|1P0E|A Chain A, Crystal Structure Of Zymomonas Mobilis Trna-Guanine
Transglycosylase (Tgt) Cocrystallised With Preq1 At Ph
5.5
pdb|1Q4W|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-3h-Quinazolin-4- One
pdb|1Q63|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-8-(1h-Imidazol-2-
Ylsulfanylmethyl)-3h-Quinazoline-4-One Crystallized At
Ph 5.5
pdb|1Q65|A Chain A, Crystal Structure Of Tgt In Complex With 2,6-Diamino-8-(2-
Dimethylaminoethylsulfanylmethyl)-3h-Quinazolin-4-One
Crystallized At Ph 5.5
pdb|1Q66|A Chain A, Crystal Structure Of Tgt In Complex With
2-Amino-6-Aminomethyl-8-
Phenylsulfanylmethyl-3h-Quinazolin-4-One Crystallized At
Ph 5.5
pdb|1R5Y|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-diamino-3h-quinazolin-4- One Crystallized At Ph 5.5
pdb|1S38|A Chain A, Crystal Structure Of Tgt In Complex With
2-amino-8-methylquinazolin- 4(3h)-one
pdb|1S39|A Chain A, Crystal Structure Of Tgt In Complex With
2-Aminoquinazolin-4(3h)-One
pdb|2BBF|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis In Complex With
6-Amino-3,7-Dihydro-Imidazo[4,5- G]quinazolin-8-One
pdb|2QII|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis Complexed With Archaeosine
Precursor, Preq0
pdb|1PUD|A Chain A, Trna-Guanine Transglycosylase
pdb|2PWU|A Chain A, Trna Guanine Transglycosylase In Complex With Guanine
pdb|2Z7K|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
2-Amino-Lin- Benzoguanine
pdb|3C2N|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-(2-
Morpholin-4-Yl-Ethylamino)-1,7-Dihydro-Imidazo[4,
5-G]quinazolin-8-One
pdb|3C2Y|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-Methyl-
1,7-Dihydro-Imidazo[4,5-G]quinazolin-8-One
pdb|3C2Z|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-
[(Thiophen-2-Ylmethyl)-Amino]-1,7-Dihydro-Imidazo[4,
5-G]quinazolin-8- One
pdb|3EOS|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-{2-
[(Cyclohexylmethyl)amino]ethyl}-2-(Methylamino)-1,
7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One
pdb|3EOU|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-(2-
Hydroxyethyl)-2-(Methylamino)-3,7-Dihydro-8h-Imidazo[4,
5- G]quinazolin-8-One
pdb|3GC4|A Chain A, Trna-Guanine Transglycosylase In Complex With Inhibitor
pdb|3GC5|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-(2-
Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin- 8-One
pdb|3GE7|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-{2-
[(Cyclopentylmethyl)amino]ethyl}-2-(Methylamino)-1,
7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One
pdb|3GEV|A Chain A, Trna-Guanine Transglycosylase In Complex With
2-[(2-Thienylmethyl)
Amino]-1,7-Dihydro-8h-Imidazo[4,5-G]quinazolin-8-One
pdb|3V0Y|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3RR4|A Chain A, Trna-Guanine Transglycosylase In Complex With
N-Methyl-Lin- Benzoguanine Inhibitor
pdb|3S1G|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3SM0|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3TLL|A Chain A, Trna-Guanine Transglycosylase In Complex With
N-Ethyl-Lin-Benzoguanine Inhibitor
Length = 386
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 268 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 319
>pdb|4HQV|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
In Complex With Queuine
Length = 385
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 267 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 318
>pdb|1WKF|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 268 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 319
>pdb|1OZM|A Chain A, Y106f Mutant Of Z. Mobilis Tgt
pdb|1OZQ|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) Y106f Complexed With Preq1
Length = 386
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 268 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 319
>pdb|1WKD|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 268 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 319
>pdb|1WKE|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 268 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 319
>pdb|1Y5V|A Chain A, Trna-guanine Transglycosylase (tgt) In Complex With
6-amino-4-(2-
Phenylethyl)-1,7-dihydro-8h-imidazo[4,
5-g]quinazolin-8-one
pdb|1Y5W|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methylphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|1Y5X|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methoxyphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|1Y5X|D Chain D, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methoxyphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|2QZR|A Chain A, Trna-Guanine Transglycosylase(Tgt) In Complex With
6-Amino-2-[(1-
Naphthylmethyl)amino]-3,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
Length = 385
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 267 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 318
>pdb|2POT|A Chain A, Trna Guanine Transglycosylase (Tgt) E235q Mutant In
Complex With Guanine
pdb|2PWV|A Chain A, Trna Guanine Transglycosylase E235q Mutant In Complex With
Preq0
pdb|2Z1V|A Chain A, Trna Guanine Transglycosylase E235q Mutant Apo Structure,
Ph 8.5
pdb|2Z1W|A Chain A, Trna Guanine Transglycosylase Tgt E235q Mutant In Complex
With Bdi (2-
Butyl-5,6-Dihydro-1h-Imidazo[4,5-D]pyridazine-4,7-Dione)
pdb|2Z1X|A Chain A, Trna Guanine Transglycosylase E235q Mutant In Complex With
Preq1
Length = 386
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 268 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 319
>pdb|2OKO|A Chain A, Z. Mobilis Trna Guanine Transglycosylase E235q Mutant
Apo-Structure At Ph 5.5
Length = 385
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 267 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 318
>pdb|3BL3|A Chain A, Trna Guanine Transglycosylase V233g Mutant Apo Structure
pdb|3BLD|A Chain A, Trna Guanine Transglycosylase V233g Mutant Preq1 Complex
Structure
Length = 386
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 268 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 319
>pdb|4HSH|A Chain A, Trna-Guanine Transglycosylase Y106f, V233g Mutant In
Complex With Queuine
Length = 385
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 267 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 318
>pdb|3UNT|A Chain A, Trna-Guanine Transglycosylase E339q Mutant
Length = 388
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 31 IVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCH 83
IV A +F C+L TR+G G T + I + F+ + + + CH
Sbjct: 270 IVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDL-KPLDSECH 321
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 19 LDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQA 78
L G V +R +I+ F + L++T +G+++ VV D+ +
Sbjct: 64 LSGELTVEQRASIIQRFRDGKE--KVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDY 121
Query: 79 EDRCHRIGQT 88
E HRIG+T
Sbjct: 122 ETYLHRIGRT 131
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 26.6 bits (57), Expect = 5.8, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 71 NPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLI---LDAAVLE 122
+P A+ R R G+TRP +RL T+ + + E + +++ L + VLE
Sbjct: 414 SPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLE 468
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 26.6 bits (57), Expect = 5.8, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 71 NPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLI---LDAAVLE 122
+P A+ R R G+TRP +RL T+ + + E + +++ L + VLE
Sbjct: 414 SPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLE 468
>pdb|3AK5|A Chain A, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|B Chain B, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|C Chain C, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|D Chain D, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
Length = 975
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 53 QGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGT-VDENVYEIAK 111
G TGA VV + + N Q++ D H+IG+ L +GT ++E ++
Sbjct: 340 NGSTWTGAGIVVDNGVSVNWQVNGVKGDNLHKIGEG------TLTVQGTGINEGGLKVGD 393
Query: 112 RKLILDAAVLESGVEVDNEG 131
K++L+ + DN+G
Sbjct: 394 GKVVLNQ-------QADNKG 406
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,297,322
Number of Sequences: 62578
Number of extensions: 164568
Number of successful extensions: 422
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 42
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)