Query 032027
Match_columns 148
No_of_seqs 169 out of 1301
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 13:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z5z_A Helicase of the SNF2/RA 100.0 5.2E-34 1.8E-38 213.4 10.4 140 2-143 125-265 (271)
2 3mwy_W Chromo domain-containin 100.0 5.5E-31 1.9E-35 221.4 10.4 125 1-125 584-709 (800)
3 1z3i_X Similar to RAD54-like; 100.0 2E-30 6.9E-35 213.6 11.4 124 2-125 429-553 (644)
4 1z63_A Helicase of the SNF2/RA 100.0 2.8E-29 9.5E-34 200.6 8.8 140 2-143 354-494 (500)
5 1wp9_A ATP-dependent RNA helic 99.9 1.1E-22 3.9E-27 159.3 6.9 112 2-118 374-493 (494)
6 3dmq_A RNA polymerase-associat 99.9 2.8E-21 9.6E-26 165.2 12.2 116 2-117 516-632 (968)
7 1t5i_A C_terminal domain of A 99.8 4.2E-19 1.4E-23 124.1 11.1 93 2-98 44-136 (172)
8 2hjv_A ATP-dependent RNA helic 99.8 1.2E-19 4E-24 125.8 7.8 104 2-111 48-151 (163)
9 2p6n_A ATP-dependent RNA helic 99.8 1.1E-19 3.7E-24 129.3 6.1 95 2-100 67-161 (191)
10 2jgn_A DBX, DDX3, ATP-dependen 99.8 1.8E-19 6.3E-24 127.4 6.9 95 2-100 59-153 (185)
11 2fwr_A DNA repair protein RAD2 99.8 1.3E-19 4.6E-24 143.6 6.8 100 16-117 371-471 (472)
12 3hgt_A HDA1 complex subunit 3; 99.8 1.3E-18 4.5E-23 132.0 8.6 104 1-111 137-248 (328)
13 1fuk_A Eukaryotic initiation f 99.8 1.7E-18 5.7E-23 120.1 7.4 97 2-102 43-139 (165)
14 2rb4_A ATP-dependent RNA helic 99.7 2.2E-17 7.7E-22 115.4 11.1 96 2-101 47-148 (175)
15 2yjt_D ATP-dependent RNA helic 99.6 1.8E-19 6.2E-24 125.6 0.0 90 2-93 43-132 (170)
16 3eaq_A Heat resistant RNA depe 99.7 1.5E-17 5.1E-22 119.9 9.5 95 2-100 44-138 (212)
17 4a2p_A RIG-I, retinoic acid in 99.7 3.2E-18 1.1E-22 137.3 6.7 116 2-123 403-530 (556)
18 4a2q_A RIG-I, retinoic acid in 99.7 2.1E-17 7.3E-22 138.8 6.9 116 2-123 644-771 (797)
19 3tbk_A RIG-I helicase domain; 99.7 1.7E-17 5.7E-22 132.8 5.4 115 2-122 402-528 (555)
20 4a2w_A RIG-I, retinoic acid in 99.7 2.4E-17 8.3E-22 140.6 6.4 115 2-122 644-770 (936)
21 3i32_A Heat resistant RNA depe 99.7 2.9E-16 9.8E-21 118.8 10.8 95 2-100 41-135 (300)
22 2oca_A DAR protein, ATP-depend 99.7 2.5E-16 8.6E-21 125.9 10.3 98 3-101 361-459 (510)
23 2db3_A ATP-dependent RNA helic 99.7 2.4E-16 8.3E-21 124.2 10.0 94 2-99 313-406 (434)
24 1xti_A Probable ATP-dependent 99.7 5E-16 1.7E-20 119.6 11.0 105 2-111 263-367 (391)
25 2z0m_A 337AA long hypothetical 99.6 9.2E-17 3.2E-21 121.2 5.2 94 15-111 242-335 (337)
26 2j0s_A ATP-dependent RNA helic 99.6 3.4E-16 1.2E-20 121.5 8.2 96 2-101 289-384 (410)
27 1hv8_A Putative ATP-dependent 99.6 2.1E-16 7.1E-21 120.4 6.8 96 2-101 251-346 (367)
28 4gl2_A Interferon-induced heli 99.6 8.9E-16 3E-20 126.8 10.2 114 2-121 413-540 (699)
29 3pey_A ATP-dependent RNA helic 99.6 2.8E-15 9.4E-20 115.2 11.6 93 2-98 256-354 (395)
30 1s2m_A Putative ATP-dependent 99.6 7E-16 2.4E-20 119.3 8.2 95 2-100 271-365 (400)
31 2i4i_A ATP-dependent RNA helic 99.6 5.6E-16 1.9E-20 120.4 7.5 95 2-100 289-383 (417)
32 3eiq_A Eukaryotic initiation f 99.6 1.6E-15 5.6E-20 117.5 6.1 95 2-100 293-387 (414)
33 1oyw_A RECQ helicase, ATP-depe 99.6 8.8E-15 3E-19 118.0 9.9 90 2-93 249-338 (523)
34 3fht_A ATP-dependent RNA helic 99.6 1.4E-14 4.8E-19 112.0 10.6 106 2-112 279-390 (412)
35 2ykg_A Probable ATP-dependent 99.6 6.8E-15 2.3E-19 121.4 8.1 98 2-104 411-520 (696)
36 3sqw_A ATP-dependent RNA helic 99.6 3.6E-14 1.2E-18 115.3 11.9 103 3-111 302-407 (579)
37 3i5x_A ATP-dependent RNA helic 99.5 4.3E-14 1.5E-18 114.1 11.9 103 3-111 353-458 (563)
38 2v1x_A ATP-dependent DNA helic 99.5 1.6E-14 5.3E-19 118.1 9.2 90 3-94 281-370 (591)
39 1fuu_A Yeast initiation factor 99.5 5.7E-16 1.9E-20 119.3 0.0 94 3-100 273-366 (394)
40 3h1t_A Type I site-specific re 99.5 6.8E-14 2.3E-18 113.8 6.4 94 3-97 453-558 (590)
41 3oiy_A Reverse gyrase helicase 99.4 2.3E-13 7.9E-18 106.0 8.8 102 3-115 266-376 (414)
42 3rc3_A ATP-dependent RNA helic 99.4 1.1E-12 3.7E-17 108.6 9.2 97 2-99 333-444 (677)
43 3fmp_B ATP-dependent RNA helic 99.4 4.6E-14 1.6E-18 112.0 0.0 88 3-92 347-440 (479)
44 1c4o_A DNA nucleotide excision 99.3 1.1E-11 3.8E-16 102.5 10.2 95 2-101 452-551 (664)
45 3fho_A ATP-dependent RNA helic 99.3 3.7E-13 1.3E-17 108.0 0.9 90 3-94 371-466 (508)
46 2d7d_A Uvrabc system protein B 99.3 1.4E-11 4.6E-16 101.9 10.2 95 2-101 458-557 (661)
47 2xgj_A ATP-dependent RNA helic 99.3 8.1E-12 2.8E-16 107.4 8.4 85 15-101 408-500 (1010)
48 2eyq_A TRCF, transcription-rep 99.2 1E-11 3.4E-16 108.1 7.7 94 2-99 825-921 (1151)
49 3l9o_A ATP-dependent RNA helic 99.2 1.9E-11 6.5E-16 106.0 7.1 88 16-105 507-602 (1108)
50 1gm5_A RECG; helicase, replica 99.2 6.2E-12 2.1E-16 105.5 3.7 89 3-93 600-692 (780)
51 1tf5_A Preprotein translocase 99.2 2.2E-11 7.4E-16 102.1 6.4 85 2-90 445-537 (844)
52 2va8_A SSO2462, SKI2-type heli 99.2 8.9E-11 3E-15 97.5 9.9 86 14-101 313-409 (715)
53 2p6r_A Afuhel308 helicase; pro 99.2 5.5E-11 1.9E-15 98.7 7.4 87 15-103 298-391 (702)
54 2zj8_A DNA helicase, putative 99.1 8.3E-11 2.8E-15 97.8 8.1 89 14-104 295-391 (720)
55 3jux_A Protein translocase sub 99.1 1.2E-10 4.1E-15 96.6 7.9 86 2-91 487-580 (822)
56 2jlq_A Serine protease subunit 99.1 1.6E-10 5.3E-15 91.6 7.1 80 3-89 202-301 (451)
57 1yks_A Genome polyprotein [con 99.1 5E-11 1.7E-15 94.2 4.1 78 3-87 191-287 (440)
58 2wv9_A Flavivirin protease NS2 99.1 1.3E-10 4.6E-15 96.2 6.2 82 3-91 424-526 (673)
59 4a4z_A Antiviral helicase SKI2 99.1 2.7E-10 9.4E-15 97.9 8.2 90 15-107 401-499 (997)
60 4ddu_A Reverse gyrase; topoiso 99.1 2.6E-10 8.8E-15 98.9 7.5 61 3-70 323-388 (1104)
61 2z83_A Helicase/nucleoside tri 99.0 7E-11 2.4E-15 93.8 3.4 90 3-100 204-313 (459)
62 1gku_B Reverse gyrase, TOP-RG; 99.0 3.7E-10 1.3E-14 97.6 7.8 105 3-116 289-468 (1054)
63 2fsf_A Preprotein translocase 99.0 2.7E-10 9.3E-15 95.5 6.5 85 2-90 454-575 (853)
64 2whx_A Serine protease/ntpase/ 99.0 2.4E-10 8.3E-15 93.8 5.9 88 3-98 369-476 (618)
65 2v6i_A RNA helicase; membrane, 99.0 2.8E-10 9.7E-15 89.6 5.4 81 3-90 185-282 (431)
66 2xau_A PRE-mRNA-splicing facto 99.0 1.1E-10 3.9E-15 97.9 2.9 86 12-102 337-445 (773)
67 1nkt_A Preprotein translocase 99.0 3E-09 1E-13 89.6 11.0 85 2-90 473-609 (922)
68 3o8b_A HCV NS3 protease/helica 98.8 2.7E-09 9.4E-14 88.1 4.3 86 2-101 409-515 (666)
69 4f92_B U5 small nuclear ribonu 98.3 1.2E-06 4.2E-11 79.0 6.6 84 15-100 1215-1308(1724)
70 4f92_B U5 small nuclear ribonu 98.2 1.5E-06 5.2E-11 78.4 6.2 86 14-101 379-474 (1724)
71 2w00_A HSDR, R.ECOR124I; ATP-b 98.0 9.3E-06 3.2E-10 70.2 6.9 69 27-98 637-707 (1038)
72 2vl7_A XPD; helicase, unknown 96.3 0.0056 1.9E-07 49.3 5.5 53 17-73 409-466 (540)
73 2ipc_A Preprotein translocase 94.1 0.14 4.9E-06 43.9 7.3 33 62-94 662-694 (997)
74 4a15_A XPD helicase, ATP-depen 92.7 0.29 9.9E-06 40.1 6.8 46 24-71 480-528 (620)
75 1gm5_A RECG; helicase, replica 80.2 3.5 0.00012 34.7 6.1 61 4-65 436-496 (780)
76 2lqo_A Putative glutaredoxin R 65.0 20 0.00067 21.4 6.1 45 2-46 17-61 (92)
77 1u6t_A SH3 domain-binding glut 63.6 23 0.00079 22.5 5.7 34 3-36 20-53 (121)
78 4dpp_A DHDPS 2, dihydrodipicol 62.4 28 0.00096 26.5 6.9 94 3-96 83-191 (360)
79 3crv_A XPD/RAD3 related DNA he 62.4 38 0.0013 26.9 8.1 45 28-73 426-476 (551)
80 2l82_A Designed protein OR32; 60.7 24 0.00084 22.2 5.3 34 6-39 19-52 (162)
81 3i42_A Response regulator rece 60.2 7 0.00024 23.7 2.8 14 3-16 17-30 (127)
82 3nhm_A Response regulator; pro 59.9 26 0.00088 21.1 5.7 18 67-84 104-121 (133)
83 2l82_A Designed protein OR32; 50.8 42 0.0014 21.2 5.1 36 4-39 91-129 (162)
84 2oo3_A Protein involved in cat 48.7 20 0.0007 26.4 4.0 84 24-110 122-213 (283)
85 3a10_A Response regulator; pho 48.2 39 0.0013 19.7 5.3 15 3-17 15-29 (116)
86 1o5k_A DHDPS, dihydrodipicolin 46.7 83 0.0028 23.0 7.3 94 3-97 36-147 (306)
87 2gpv_G Nuclear receptor corepr 46.2 10 0.00036 17.0 1.3 12 137-148 4-15 (26)
88 1xky_A Dihydrodipicolinate syn 44.2 85 0.0029 22.9 6.9 94 3-97 36-147 (301)
89 2eyq_A TRCF, transcription-rep 44.0 41 0.0014 29.7 5.8 59 6-65 673-731 (1151)
90 3daq_A DHDPS, dihydrodipicolin 43.7 78 0.0027 23.0 6.6 94 3-96 26-136 (292)
91 3l21_A DHDPS, dihydrodipicolin 42.7 97 0.0033 22.7 7.4 93 3-96 39-149 (304)
92 2j48_A Two-component sensor ki 42.7 19 0.00065 20.9 2.7 15 3-17 15-29 (119)
93 2hmc_A AGR_L_411P, dihydrodipi 42.5 51 0.0017 24.8 5.5 94 3-97 50-160 (344)
94 2ehh_A DHDPS, dihydrodipicolin 41.5 70 0.0024 23.3 6.0 94 3-97 24-135 (294)
95 2wkj_A N-acetylneuraminate lya 41.1 73 0.0025 23.3 6.1 94 3-96 35-146 (303)
96 2ovm_B NCOR, progesterone rece 40.9 13 0.00043 16.8 1.1 14 135-148 10-23 (26)
97 3cnb_A DNA-binding response re 40.8 48 0.0017 20.0 4.5 13 3-15 22-35 (143)
98 3a5f_A Dihydrodipicolinate syn 40.7 90 0.0031 22.6 6.5 94 3-96 25-135 (291)
99 3cpr_A Dihydrodipicolinate syn 40.6 76 0.0026 23.2 6.1 93 3-96 40-150 (304)
100 3oiy_A Reverse gyrase helicase 39.3 31 0.0011 25.9 4.0 53 12-65 90-145 (414)
101 3b4u_A Dihydrodipicolinate syn 38.9 1.1E+02 0.0037 22.2 6.7 94 3-96 27-141 (294)
102 2yxg_A DHDPS, dihydrodipicolin 38.1 87 0.003 22.7 6.1 94 3-97 24-135 (289)
103 3e96_A Dihydrodipicolinate syn 37.4 41 0.0014 24.9 4.2 93 3-96 36-145 (316)
104 3f6p_A Transcriptional regulat 37.3 43 0.0015 19.8 3.8 17 2-18 15-31 (120)
105 3lte_A Response regulator; str 34.3 45 0.0015 19.9 3.5 17 2-18 19-35 (132)
106 2v9d_A YAGE; dihydrodipicolini 34.2 1.2E+02 0.004 22.7 6.3 93 3-96 55-165 (343)
107 2r8w_A AGR_C_1641P; APC7498, d 33.5 75 0.0026 23.7 5.2 93 3-96 58-168 (332)
108 1f6k_A N-acetylneuraminate lya 33.5 1E+02 0.0036 22.3 5.9 92 3-96 27-138 (293)
109 3grc_A Sensor protein, kinase; 33.4 80 0.0027 19.0 5.4 15 3-17 20-34 (140)
110 3si9_A DHDPS, dihydrodipicolin 32.9 1.2E+02 0.0041 22.3 6.2 93 3-96 46-156 (315)
111 3h5i_A Response regulator/sens 32.9 83 0.0029 19.0 6.0 17 2-18 18-34 (140)
112 3m5v_A DHDPS, dihydrodipicolin 32.8 95 0.0033 22.6 5.6 93 3-96 31-142 (301)
113 3eqz_A Response regulator; str 32.7 35 0.0012 20.4 2.8 74 14-87 47-127 (135)
114 3h5d_A DHDPS, dihydrodipicolin 32.5 1.5E+02 0.005 21.8 7.3 94 3-96 31-142 (311)
115 4dad_A Putative pilus assembly 31.6 89 0.0031 19.0 5.0 16 3-18 34-50 (146)
116 3na8_A Putative dihydrodipicol 31.5 80 0.0028 23.3 5.0 92 3-96 48-158 (315)
117 2rfg_A Dihydrodipicolinate syn 31.3 84 0.0029 22.9 5.0 94 3-97 24-135 (297)
118 1t1v_A SH3BGRL3, SH3 domain-bi 31.3 78 0.0027 18.2 5.7 45 3-47 22-67 (93)
119 3cg4_A Response regulator rece 30.3 92 0.0031 18.7 7.1 13 3-15 21-33 (142)
120 3klo_A Transcriptional regulat 29.8 85 0.0029 21.1 4.7 75 12-86 53-130 (225)
121 3fe2_A Probable ATP-dependent 29.7 1.3E+02 0.0046 20.4 6.8 57 4-65 121-182 (242)
122 3kht_A Response regulator; PSI 29.7 65 0.0022 19.6 3.8 44 2-50 18-61 (144)
123 3qze_A DHDPS, dihydrodipicolin 29.6 1.7E+02 0.0057 21.5 7.6 93 3-96 47-157 (314)
124 2gkg_A Response regulator homo 29.4 65 0.0022 18.8 3.7 15 3-17 19-33 (127)
125 3n53_A Response regulator rece 29.4 96 0.0033 18.6 7.3 9 4-12 18-26 (140)
126 3d0c_A Dihydrodipicolinate syn 29.0 70 0.0024 23.6 4.3 92 3-95 36-144 (314)
127 1zgz_A Torcad operon transcrip 28.9 58 0.002 19.1 3.3 15 3-17 16-30 (122)
128 3flu_A DHDPS, dihydrodipicolin 28.5 1.7E+02 0.0058 21.2 8.2 93 3-96 31-141 (297)
129 2ojp_A DHDPS, dihydrodipicolin 28.0 1.7E+02 0.0058 21.1 8.7 93 3-96 25-135 (292)
130 2qai_A V-type ATP synthase sub 27.1 43 0.0015 20.9 2.4 42 9-50 15-58 (111)
131 2vc6_A MOSA, dihydrodipicolina 27.0 95 0.0032 22.5 4.7 94 3-97 24-135 (292)
132 3tla_A MCCF; serine protease, 26.7 1.2E+02 0.0042 23.0 5.4 52 3-56 64-123 (371)
133 3ilh_A Two component response 25.6 82 0.0028 19.0 3.7 12 3-14 23-34 (146)
134 1xrs_A D-lysine 5,6-aminomutas 25.5 1.2E+02 0.0042 23.9 5.1 36 77-112 137-172 (516)
135 3tak_A DHDPS, dihydrodipicolin 25.4 1.9E+02 0.0066 20.8 7.9 93 3-96 25-135 (291)
136 2h54_A Caspase-1; allosteric s 25.3 1.6E+02 0.0054 19.8 6.1 34 3-37 68-101 (178)
137 3gl9_A Response regulator; bet 24.7 50 0.0017 19.7 2.4 17 2-18 15-31 (122)
138 2qv0_A Protein MRKE; structura 24.5 1.2E+02 0.0041 18.2 4.3 15 3-17 23-38 (143)
139 1dz3_A Stage 0 sporulation pro 23.6 1E+02 0.0036 18.2 3.9 13 3-15 16-29 (130)
140 2qvg_A Two component response 22.4 1.3E+02 0.0046 17.9 5.5 12 3-14 21-32 (143)
141 1hmj_A RPB5, protein (subunit 22.4 1.1E+02 0.0036 17.9 3.3 43 20-63 12-55 (78)
142 2ct6_A SH3 domain-binding glut 22.2 1.4E+02 0.0047 18.0 5.6 32 4-35 29-60 (111)
143 1gku_B Reverse gyrase, TOP-RG; 22.2 1E+02 0.0035 26.8 4.6 59 4-65 118-181 (1054)
144 3lua_A Response regulator rece 22.2 1E+02 0.0034 18.6 3.6 15 3-17 18-33 (140)
145 3rot_A ABC sugar transporter, 22.1 1.3E+02 0.0044 21.0 4.6 28 7-34 154-181 (297)
146 3ber_A Probable ATP-dependent 21.9 2E+02 0.0068 19.8 7.0 55 6-65 132-192 (249)
147 2fp3_A Caspase NC; apoptosis, 21.8 2.4E+02 0.0083 20.7 6.1 34 3-37 87-120 (316)
148 1yya_A Triosephosphate isomera 21.7 1.5E+02 0.0053 21.2 4.8 19 53-71 151-170 (250)
149 2qxy_A Response regulator; reg 21.4 1E+02 0.0036 18.5 3.6 15 3-17 18-32 (142)
150 4e5s_A MCCFLIKE protein (BA_56 21.4 1.5E+02 0.0051 22.0 4.9 52 3-56 33-92 (331)
151 2zay_A Response regulator rece 20.9 91 0.0031 18.9 3.2 16 2-17 21-36 (147)
152 3jy6_A Transcriptional regulat 20.7 2.1E+02 0.0072 19.6 6.1 38 2-39 26-63 (276)
153 1tmy_A CHEY protein, TMY; chem 20.4 93 0.0032 18.0 3.1 15 3-17 16-30 (120)
154 3sr3_A Microcin immunity prote 20.4 1.5E+02 0.0053 22.0 4.8 52 3-56 34-93 (336)
155 1jbe_A Chemotaxis protein CHEY 20.4 88 0.003 18.4 3.0 13 3-15 18-30 (128)
No 1
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=5.2e-34 Score=213.45 Aligned_cols=140 Identities=31% Similarity=0.443 Sum_probs=111.7
Q ss_pred HHHHHHHHHhc-CCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHH
Q 032027 2 LDILEWTLDVI-GVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAED 80 (148)
Q Consensus 2 l~~l~~~L~~~-~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~g 80 (148)
++.|...|... |+++..++|+++.++|.+++++|++++.+.|+|++++++|+|+||+.|++||+||+||||..+.||+|
T Consensus 125 ~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~g 204 (271)
T 1z5z_A 125 GKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATD 204 (271)
T ss_dssp HHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC-----
T ss_pred HHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHH
Confidence 67889999885 99999999999999999999999998777889999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCchhHHHHHHH
Q 032027 81 RCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAVLESGVEVDNEGDTSDKTMGEILS 143 (148)
Q Consensus 81 R~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 143 (148)
|+||+||+++|.||++++++|+|+++++++..|..+++.+++.+..... ..+.+++.+++.
T Consensus 205 R~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~~~~~--~~~~~~l~~l~~ 265 (271)
T 1z5z_A 205 RVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWIT--ELSTEELRKVIE 265 (271)
T ss_dssp ---------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHHHH--TSCHHHHHHHHS
T ss_pred hccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHccCchhhh--cCCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999987643322 233455665554
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.5e-31 Score=221.37 Aligned_cols=125 Identities=52% Similarity=0.789 Sum_probs=113.1
Q ss_pred CHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCC-CcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHH
Q 032027 1 MLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDT-SIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAE 79 (148)
Q Consensus 1 ~l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~-~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~ 79 (148)
++++|+.+|..+|+++..++|+++..+|.+++++|++++ ...++|+|++++|+|+||+.|++||++|++|||..+.||+
T Consensus 584 ~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~ 663 (800)
T 3mwy_W 584 MLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAM 663 (800)
T ss_dssp HHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHH
Confidence 378999999999999999999999999999999999855 4568999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCc
Q 032027 80 DRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAVLESGV 125 (148)
Q Consensus 80 gR~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~~K~~~~~~~~~~~~ 125 (148)
||+||+||+++|+||+|++++|+|++|++++.+|..+..++++.+.
T Consensus 664 gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~ 709 (800)
T 3mwy_W 664 ARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGV 709 (800)
T ss_dssp TTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC-------
T ss_pred HHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCc
Confidence 9999999999999999999999999999999999999988887654
No 3
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2e-30 Score=213.61 Aligned_cols=124 Identities=40% Similarity=0.620 Sum_probs=117.7
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCC-cceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHH
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTS-IFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAED 80 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~-~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~g 80 (148)
++.|+..|...|++++.++|+++.++|.+++++|++++. ..++|++++++|+|+||+.|++||++|+||||..+.||+|
T Consensus 429 ~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~g 508 (644)
T 1z3i_X 429 LDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMA 508 (644)
T ss_dssp HHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHH
Confidence 688999999999999999999999999999999998764 4589999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCc
Q 032027 81 RCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAVLESGV 125 (148)
Q Consensus 81 R~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~~K~~~~~~~~~~~~ 125 (148)
|+||+||+++|.||++++.+|+|++|++++..|..+++.+++.+.
T Consensus 509 R~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~ 553 (644)
T 1z3i_X 509 RVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQ 553 (644)
T ss_dssp TSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSS
T ss_pred hhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999988887654
No 4
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.96 E-value=2.8e-29 Score=200.60 Aligned_cols=140 Identities=31% Similarity=0.443 Sum_probs=121.4
Q ss_pred HHHHHHHHHhc-CCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHH
Q 032027 2 LDILEWTLDVI-GVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAED 80 (148)
Q Consensus 2 l~~l~~~L~~~-~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~g 80 (148)
++.|...|... |+++..++|+++.++|.+++++|++++.+.++|++++++++|+|++.|++||++|+||||..+.||+|
T Consensus 354 ~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~g 433 (500)
T 1z63_A 354 GKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATD 433 (500)
T ss_dssp HHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHH
T ss_pred HHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHH
Confidence 57788889886 99999999999999999999999988777789999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCchhHHHHHHH
Q 032027 81 RCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAVLESGVEVDNEGDTSDKTMGEILS 143 (148)
Q Consensus 81 R~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 143 (148)
|++|+||+++|.||++++++|+|+++++++.+|..+++.+++.+..... ..+.+++.++++
T Consensus 434 R~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~~~~--~~~~~~l~~l~~ 494 (500)
T 1z63_A 434 RVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWIT--ELSTEELRKVIE 494 (500)
T ss_dssp TTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTGGGG--SSCHHHHHHHHS
T ss_pred HHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcCcchhc--cCCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999987654332 234456665553
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=1.1e-22 Score=159.35 Aligned_cols=112 Identities=24% Similarity=0.259 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCCeEEEEeC--------CCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcc
Q 032027 2 LDILEWTLDVIGVTYRRLDG--------STQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQ 73 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G--------~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~ 73 (148)
++.|.+.|+..|+++..++| +++.++|.+++++|+++. +. +|++|+++++|+|++.+++||++++||||.
T Consensus 374 ~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~-~~-vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~ 451 (494)
T 1wp9_A 374 AKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE-FN-VLVATSVGEEGLDVPEVDLVVFYEPVPSAI 451 (494)
T ss_dssp HHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS-CS-EEEECGGGGGGGGSTTCCEEEESSCCHHHH
T ss_pred HHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC-ce-EEEECCccccCCCchhCCEEEEeCCCCCHH
Confidence 56788999999999999999 899999999999999776 34 567779999999999999999999999999
Q ss_pred hHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 032027 74 IDRQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDA 118 (148)
Q Consensus 74 ~~~Q~~gR~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~~K~~~~~ 118 (148)
.+.||+||++|.|| +.+|.+++++|+|++++..+.+|..+++
T Consensus 452 ~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 452 RSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp HHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred HHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 99999999999998 8899999999999999999999987654
No 6
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.85 E-value=2.8e-21 Score=165.25 Aligned_cols=116 Identities=23% Similarity=0.248 Sum_probs=105.0
Q ss_pred HHHHHHHHHh-cCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHH
Q 032027 2 LDILEWTLDV-IGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAED 80 (148)
Q Consensus 2 l~~l~~~L~~-~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~g 80 (148)
.+.|...|.. .|+++..+||+++..+|.+++++|+++.+...+|++|+++++|+|++.+++||++|+||||..+.|++|
T Consensus 516 ~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~G 595 (968)
T 3dmq_A 516 ALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIG 595 (968)
T ss_dssp HHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhh
Confidence 4678888985 599999999999999999999999988633345667799999999999999999999999999999999
Q ss_pred hhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 032027 81 RCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILD 117 (148)
Q Consensus 81 R~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~~K~~~~ 117 (148)
|++|.||++.|.+|+++.++|+|+++++.+.+|..++
T Consensus 596 R~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~ 632 (968)
T 3dmq_A 596 RLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAF 632 (968)
T ss_dssp TTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCS
T ss_pred ccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCce
Confidence 9999999999999999999999999999998887543
No 7
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.80 E-value=4.2e-19 Score=124.15 Aligned_cols=93 Identities=16% Similarity=0.116 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.+...|...|+++..+||+++..+|.+++++|+++. .. +|++|+++++|+|++.+++||++|+||++..|.|++||
T Consensus 44 ~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR 121 (172)
T 1t5i_A 44 CIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ-RR-ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVAR 121 (172)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC-Cc-EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcc
Confidence 46788899999999999999999999999999998765 34 56677999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEEEEEe
Q 032027 82 CHRIGQTRPVTIYRLVT 98 (148)
Q Consensus 82 ~~R~Gq~~~v~v~~l~~ 98 (148)
++|.|+...+ +.++.
T Consensus 122 ~~R~g~~g~~--~~~~~ 136 (172)
T 1t5i_A 122 AGRFGTKGLA--ITFVS 136 (172)
T ss_dssp HTGGGCCCEE--EEEEC
T ss_pred cccCCCCcEE--EEEEc
Confidence 9999987544 44454
No 8
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.80 E-value=1.2e-19 Score=125.78 Aligned_cols=104 Identities=16% Similarity=0.271 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.+...|...|+++..+||+++..+|.+++++|+++. .. +|++|+++++|+|++.+++||++++||++..|.|++||
T Consensus 48 ~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR 125 (163)
T 2hjv_A 48 VNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE-YR-YLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGR 125 (163)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC-Ce-EEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccc
Confidence 35678899999999999999999999999999998765 34 56677999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 032027 82 CHRIGQTRPVTIYRLVTKGTVDENVYEIAK 111 (148)
Q Consensus 82 ~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~ 111 (148)
++|.|+...+ +.++.+. |...++.+.
T Consensus 126 ~~R~g~~g~~--~~~~~~~--~~~~~~~i~ 151 (163)
T 2hjv_A 126 TGRAGNKGKA--ISFVTAF--EKRFLADIE 151 (163)
T ss_dssp SSCTTCCEEE--EEEECGG--GHHHHHHHH
T ss_pred cCcCCCCceE--EEEecHH--HHHHHHHHH
Confidence 9999987544 5556544 444444443
No 9
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=129.32 Aligned_cols=95 Identities=21% Similarity=0.246 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.+.+.|...|+++..+||+++.++|.+++++|+++. .. +|++|+++++|+|++.+++||++|+||++..|.|++||
T Consensus 67 ~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~-~~-vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR 144 (191)
T 2p6n_A 67 VDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK-KD-VLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGR 144 (191)
T ss_dssp HHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS-CS-EEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC-CE-EEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCc
Confidence 46788899999999999999999999999999998765 34 56677999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEEEEEeCC
Q 032027 82 CHRIGQTRPVTIYRLVTKG 100 (148)
Q Consensus 82 ~~R~Gq~~~v~v~~l~~~~ 100 (148)
++|.|++..+ +.|+.+.
T Consensus 145 ~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 145 TGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp SCC---CCEE--EEEECTT
T ss_pred cccCCCCcEE--EEEEcCc
Confidence 9999997644 4456544
No 10
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.78 E-value=1.8e-19 Score=127.42 Aligned_cols=95 Identities=18% Similarity=0.237 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.|...|+..|+++..+||+++..+|.+++++|+++. .. +|++|+++++|+|++.+++||++|+||++..+.|++||
T Consensus 59 ~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR 136 (185)
T 2jgn_A 59 ADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK-SP-ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 136 (185)
T ss_dssp HHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS-SS-EEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC-Ce-EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccc
Confidence 46788899999999999999999999999999998766 34 56677999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEEEEEeCC
Q 032027 82 CHRIGQTRPVTIYRLVTKG 100 (148)
Q Consensus 82 ~~R~Gq~~~v~v~~l~~~~ 100 (148)
++|.|++. .++.++.+.
T Consensus 137 ~~R~g~~g--~~~~~~~~~ 153 (185)
T 2jgn_A 137 TGRVGNLG--LATSFFNER 153 (185)
T ss_dssp BCCTTSCE--EEEEEECGG
T ss_pred cCCCCCCc--EEEEEEchh
Confidence 99999764 445566544
No 11
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.78 E-value=1.3e-19 Score=143.62 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=78.1
Q ss_pred EEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHhhhhcCCC-CcEEEE
Q 032027 16 YRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQT-RPVTIY 94 (148)
Q Consensus 16 ~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~-~~v~v~ 94 (148)
+..++|+++..+|.+++++|+++. .. +|++|+++++|+|++.+++||++++|||+..+.|++||++|.||. +.|.+|
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g~-~~-vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTGR-FR-AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSS-CS-BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred cceeeCCCCHHHHHHHHHHHhCCC-CC-EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 446899999999999999998855 44 456779999999999999999999999999999999999999998 789999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHH
Q 032027 95 RLVTKGTVDENVYEIAKRKLILD 117 (148)
Q Consensus 95 ~l~~~~t~ee~i~~~~~~K~~~~ 117 (148)
++++++|+|+++.+..+.|...+
T Consensus 449 ~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 449 ELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp EEEECSCC---------------
T ss_pred EEEeCCCchHHHHHHHHHhhccC
Confidence 99999999999999988777543
No 12
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.76 E-value=1.3e-18 Score=132.02 Aligned_cols=104 Identities=25% Similarity=0.205 Sum_probs=79.0
Q ss_pred CHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcC-----CCCCCeEEEeCCCCCcchH
Q 032027 1 MLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLN-----LTGADTVVIHDMDFNPQID 75 (148)
Q Consensus 1 ~l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gln-----l~~a~~vi~~d~~~~~~~~ 75 (148)
+||+|+.+|..+++++.+++|+.... +.+. ....+.+.|+ +.+++.|+| +..|+.||.||+.|||...
T Consensus 137 ~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~-----~~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d 209 (328)
T 3hgt_A 137 TMDLLEALLLGNKVHIKRYDGHSIKS-AAAA-----NDFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQK 209 (328)
T ss_dssp HHHHHHHHHTTSSCEEEESSSCCC-------------CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSH
T ss_pred HHHHHHHHHhcCCCceEeCCCCchhh-hhhc-----ccCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCCh
Confidence 48999999999999999999996543 2221 1334666666 467777776 7899999999999999998
Q ss_pred -HHHHHhhhhc--CCCCcEEEEEEEeCCCHHHHHHHHHH
Q 032027 76 -RQAEDRCHRI--GQTRPVTIYRLVTKGTVDENVYEIAK 111 (148)
Q Consensus 76 -~Q~~gR~~R~--Gq~~~v~v~~l~~~~t~ee~i~~~~~ 111 (148)
.|++.|+||+ ||+++|.||||++.+|+|+.+++.-+
T Consensus 210 ~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 210 DIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp HHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 8999999999 68899999999999999999998844
No 13
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.75 E-value=1.7e-18 Score=120.07 Aligned_cols=97 Identities=21% Similarity=0.207 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.+...|...++.+..+||+++..+|.+++++|+++. .. +|++|+++++|+|++.+++||++++||++..+.|++||
T Consensus 43 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR 120 (165)
T 1fuk_A 43 VEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS-SR-ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 120 (165)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCS
T ss_pred HHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC-CE-EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcc
Confidence 35678889999999999999999999999999998766 34 56677999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEEEEEeCCCH
Q 032027 82 CHRIGQTRPVTIYRLVTKGTV 102 (148)
Q Consensus 82 ~~R~Gq~~~v~v~~l~~~~t~ 102 (148)
++|.|+... ++.++.+...
T Consensus 121 ~gR~g~~g~--~~~~~~~~~~ 139 (165)
T 1fuk_A 121 GGRFGRKGV--AINFVTNEDV 139 (165)
T ss_dssp CC-----CE--EEEEEETTTH
T ss_pred cccCCCCce--EEEEEcchHH
Confidence 999997654 4566776643
No 14
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=115.37 Aligned_cols=96 Identities=18% Similarity=0.242 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCC------CCcchH
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMD------FNPQID 75 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~------~~~~~~ 75 (148)
.+.+...|...|+++..+||+++..+|.+++++|+++. .. +|++|+++++|+|++.+++||++|+| +++..|
T Consensus 47 ~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~-~~-vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~ 124 (175)
T 2rb4_A 47 AKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK-EK-VLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETY 124 (175)
T ss_dssp HHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS-CS-EEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHH
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC-Ce-EEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHH
Confidence 35678899999999999999999999999999998765 34 56677999999999999999999999 677899
Q ss_pred HHHHHhhhhcCCCCcEEEEEEEeCCC
Q 032027 76 RQAEDRCHRIGQTRPVTIYRLVTKGT 101 (148)
Q Consensus 76 ~Q~~gR~~R~Gq~~~v~v~~l~~~~t 101 (148)
.|++||++|.|+. ..++.++..+.
T Consensus 125 ~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 125 LHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp HHHHCBC----CC--EEEEEEECGGG
T ss_pred HHHhcccccCCCC--ceEEEEEccch
Confidence 9999999999965 55677776654
No 15
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.58 E-value=1.8e-19 Score=125.60 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.+...|+..|+++..+||+++..+|.+++++|+++. .. +|++|+++++|+|++.+++||++++||++..+.|++||
T Consensus 43 ~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR 120 (170)
T 2yjt_D 43 VHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR-VN-VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGR 120 (170)
Confidence 35677888888999999999999999999999998765 34 66777999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEE
Q 032027 82 CHRIGQTRPVTI 93 (148)
Q Consensus 82 ~~R~Gq~~~v~v 93 (148)
++|.|+...+.+
T Consensus 121 ~~R~g~~g~~~~ 132 (170)
T 2yjt_D 121 TARAGRKGTAIS 132 (170)
Confidence 999998766543
No 16
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.73 E-value=1.5e-17 Score=119.87 Aligned_cols=95 Identities=20% Similarity=0.274 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.+...|...|+++..+||+++..+|.++++.|+++. .. +|++|+++++|+|++.+++||++++||++..|.|++||
T Consensus 44 ~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~-~~-vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR 121 (212)
T 3eaq_A 44 TEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE-VR-VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGR 121 (212)
T ss_dssp HHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS-CC-EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC-Ce-EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcc
Confidence 35678889999999999999999999999999998765 34 56677999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEEEEEeCC
Q 032027 82 CHRIGQTRPVTIYRLVTKG 100 (148)
Q Consensus 82 ~~R~Gq~~~v~v~~l~~~~ 100 (148)
++|.|+.. .++.++.+.
T Consensus 122 ~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 122 TGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp BCCCC--B--EEEEEECGG
T ss_pred cCCCCCCC--eEEEEEchh
Confidence 99999774 455566544
No 17
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.73 E-value=3.2e-18 Score=137.26 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=55.5
Q ss_pred HHHHHHHHHhc------------CCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCC
Q 032027 2 LDILEWTLDVI------------GVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMD 69 (148)
Q Consensus 2 l~~l~~~L~~~------------~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~ 69 (148)
.+.|.+.|... |..+..+||+++.++|.+++++|++++.+. +|++|+++++|+|++.+++||+||+|
T Consensus 403 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~-vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 403 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR-LLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHTTCSGGGSCCEEC------------------------------CC-EEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceE-EEEEcCchhcCCCchhCCEEEEeCCC
Confidence 45677777665 555666677899999999999999844455 56777999999999999999999999
Q ss_pred CCcchHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q 032027 70 FNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAVLES 123 (148)
Q Consensus 70 ~~~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~~K~~~~~~~~~~ 123 (148)
||+..|.||+|| +| .+++.+|.++++++.+++ +.....|..+....+..
T Consensus 482 ~s~~~~~Qr~GR-gR---~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~ 530 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 530 (556)
T ss_dssp SCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhcCC-CC---CCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHHH
Confidence 999999999999 55 477889999999999988 66677777776666654
No 18
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.69 E-value=2.1e-17 Score=138.81 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=60.9
Q ss_pred HHHHHHHHHhc------------CCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCC
Q 032027 2 LDILEWTLDVI------------GVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMD 69 (148)
Q Consensus 2 l~~l~~~L~~~------------~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~ 69 (148)
.+.|...|+.. |..+..+||+++..+|.+++++|++++.+. +|++|+++++|+|++.+++||+||+|
T Consensus 644 ~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~-vLVaT~~~~~GIDlp~v~~VI~yd~p 722 (797)
T 4a2q_A 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR-LLIATSVADEGIDIVQCNLVVLYEYS 722 (797)
T ss_dssp HHHHHHHHHTCSTTCSCCCEEC----------------------------CCS-EEEEECC-------CCCSEEEEESCC
T ss_pred HHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce-EEEEcCchhcCCCchhCCEEEEeCCC
Confidence 46677788663 566677788899999999999999844445 56777999999999999999999999
Q ss_pred CCcchHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q 032027 70 FNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAVLES 123 (148)
Q Consensus 70 ~~~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~~K~~~~~~~~~~ 123 (148)
||+..|.||+|| +| .+++.+|.++++++++++ +.....|..+....+..
T Consensus 723 ~s~~~~iQr~GR-GR---~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~ 771 (797)
T 4a2q_A 723 GNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 771 (797)
T ss_dssp SCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhcCC-CC---CCCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999 55 477889999999999988 66667777776666554
No 19
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.69 E-value=1.7e-17 Score=132.83 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcC------------CeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCC
Q 032027 2 LDILEWTLDVIG------------VTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMD 69 (148)
Q Consensus 2 l~~l~~~L~~~~------------~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~ 69 (148)
.+.|...|...+ ..+..+||+++.++|.+++++|++++... +|++|+++++|+|++.+++||+||+|
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~-vLvaT~~~~~GlDlp~v~~VI~~d~p 480 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN-ILIATSVADEGIDIAECNLVILYEYV 480 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS-EEEECCCTTCCEETTSCSEEEEESCC
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee-EEEEcchhhcCCccccCCEEEEeCCC
Confidence 456777777663 35556667999999999999999844455 45678999999999999999999999
Q ss_pred CCcchHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh
Q 032027 70 FNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAVLE 122 (148)
Q Consensus 70 ~~~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~~K~~~~~~~~~ 122 (148)
||+..|.||+|| |+.+++.+|.++.+++.++. ......|..+.+..+.
T Consensus 481 ~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~~~~~~~~ 528 (555)
T 3tbk_A 481 GNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKEKIMNESIL 528 (555)
T ss_dssp SSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHHHHHHHHHH
Confidence 999999999999 66688999999999988877 4444455555554444
No 20
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.68 E-value=2.4e-17 Score=140.62 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=60.6
Q ss_pred HHHHHHHHHhc------------CCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCC
Q 032027 2 LDILEWTLDVI------------GVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMD 69 (148)
Q Consensus 2 l~~l~~~L~~~------------~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~ 69 (148)
++.|.+.|... |..+..+||+++..+|.+++++|++++.+. +|++|+++++|+|++.+++||+||+|
T Consensus 644 ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~-VLVaT~~~~eGIDlp~v~~VI~yD~p 722 (936)
T 4a2w_A 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR-LLIATSVADEGIDIVQCNLVVLYEYS 722 (936)
T ss_dssp HHHHHHHHHHCSTTSSCCCEEC----------------------------CCS-EEEEECC------CCCCSEEEEESCC
T ss_pred HHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCee-EEEEeCchhcCCcchhCCEEEEeCCC
Confidence 56788888876 666667788899999999999999844445 66788999999999999999999999
Q ss_pred CCcchHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh
Q 032027 70 FNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAVLE 122 (148)
Q Consensus 70 ~~~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~~K~~~~~~~~~ 122 (148)
||+..+.||+|| +| .+++.+|.+++.++.+++.+ ....|..++...+.
T Consensus 723 ~s~~~~iQr~GR-GR---~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~ 770 (936)
T 4a2w_A 723 GNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVE 770 (936)
T ss_dssp SCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHhcCC-CC---CCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999 44 57788899999999999866 55555555555544
No 21
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.68 E-value=2.9e-16 Score=118.77 Aligned_cols=95 Identities=21% Similarity=0.281 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.|...|...|+.+..+||+++..+|.++++.|+++. .. +|++|+++++|+|++.+++||++++||++..|.|++||
T Consensus 41 ~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~-~~-vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GR 118 (300)
T 3i32_A 41 TEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE-VR-VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGR 118 (300)
T ss_dssp HHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS-CC-EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC-ce-EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccC
Confidence 35678889999999999999999999999999998765 34 56777999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEEEEEeCC
Q 032027 82 CHRIGQTRPVTIYRLVTKG 100 (148)
Q Consensus 82 ~~R~Gq~~~v~v~~l~~~~ 100 (148)
++|.|+.. .++.++...
T Consensus 119 agR~g~~G--~~i~l~~~~ 135 (300)
T 3i32_A 119 TGRAGRGG--RVVLLYGPR 135 (300)
T ss_dssp CC-----C--EEEEEECSS
T ss_pred cCcCCCCc--eEEEEeChH
Confidence 99999874 455666655
No 22
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.67 E-value=2.5e-16 Score=125.88 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=87.7
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHhh
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRC 82 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR~ 82 (148)
+.|.+.|...+.++..+||+++..+|.+++++|+++. ..|+++++.++++|+|++.+++||++++||++..+.|++||+
T Consensus 361 ~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~-~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~ 439 (510)
T 2oca_A 361 KAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK-GIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRV 439 (510)
T ss_dssp HHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC-SCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC-CCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcc
Confidence 4578889998889999999999999999999998765 455555559999999999999999999999999999999999
Q ss_pred hhcCCCC-cEEEEEEEeCCC
Q 032027 83 HRIGQTR-PVTIYRLVTKGT 101 (148)
Q Consensus 83 ~R~Gq~~-~v~v~~l~~~~t 101 (148)
+|.|+.+ .|.+|.+....+
T Consensus 440 gR~g~~~~~v~i~~~~~~~~ 459 (510)
T 2oca_A 440 LRKHGSKTIATVWDLIDDAG 459 (510)
T ss_dssp HTTTCCCCCCEEEEEEEECC
T ss_pred cccCCCCceEEEEEeecchh
Confidence 9999987 699999988665
No 23
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.67 E-value=2.4e-16 Score=124.19 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.+...|...|+++..+||+++..+|.+++++|+++. .. +|++|+++++|+|++.+++||+||+|+++..|.||+||
T Consensus 313 a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~-~~-vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR 390 (434)
T 2db3_A 313 ADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGS-MK-VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGR 390 (434)
T ss_dssp HHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSS-CS-EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCC-Cc-EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcc
Confidence 46788899999999999999999999999999998765 33 67788999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEEEEEeC
Q 032027 82 CHRIGQTRPVTIYRLVTK 99 (148)
Q Consensus 82 ~~R~Gq~~~v~v~~l~~~ 99 (148)
++|.|+... .+.++.+
T Consensus 391 ~gR~g~~G~--a~~~~~~ 406 (434)
T 2db3_A 391 TGRVGNNGR--ATSFFDP 406 (434)
T ss_dssp SSCTTCCEE--EEEEECT
T ss_pred cccCCCCCE--EEEEEec
Confidence 999998754 4455653
No 24
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.66 E-value=5e-16 Score=119.59 Aligned_cols=105 Identities=15% Similarity=0.126 Sum_probs=86.5
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.+.+.|...|+++..+||+++.++|.++++.|+++.. . +|++|+++++|+|++.+++||++++||++..+.|++||
T Consensus 263 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~-~-vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR 340 (391)
T 1xti_A 263 CIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR-R-ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVAR 340 (391)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCC-S-EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCB
T ss_pred HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCC-c-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhccc
Confidence 356788999999999999999999999999999987663 3 67778999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 032027 82 CHRIGQTRPVTIYRLVTKGTVDENVYEIAK 111 (148)
Q Consensus 82 ~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~ 111 (148)
++|.|+...+. .++.+. -+.++++...
T Consensus 341 ~~R~g~~g~~~--~~~~~~-~~~~~~~~~~ 367 (391)
T 1xti_A 341 AGRFGTKGLAI--TFVSDE-NDAKILNDVQ 367 (391)
T ss_dssp CSSSCCCCEEE--EEECSH-HHHHHHHHHH
T ss_pred ccCCCCceEEE--EEEccc-chHHHHHHHH
Confidence 99999775543 344432 2344444443
No 25
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.65 E-value=9.2e-17 Score=121.19 Aligned_cols=94 Identities=18% Similarity=0.265 Sum_probs=77.5
Q ss_pred eEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHhhhhcCCCCcEEEE
Q 032027 15 TYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIY 94 (148)
Q Consensus 15 ~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 94 (148)
++..+||+++..+|.+++++|+++. .. +|++|+++++|+|++.+++||++++||++..+.|++||++|.|+...+.+|
T Consensus 242 ~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~ 319 (337)
T 2z0m_A 242 NAIELRGDLPQSVRNRNIDAFREGE-YD-MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITF 319 (337)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEE
T ss_pred hhhhhcCCCCHHHHHHHHHHHHcCC-Cc-EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEE
Confidence 6788999999999999999998766 33 677789999999999999999999999999999999999999998777776
Q ss_pred EEEeCCCHHHHHHHHHH
Q 032027 95 RLVTKGTVDENVYEIAK 111 (148)
Q Consensus 95 ~l~~~~t~ee~i~~~~~ 111 (148)
.. .+..+.+++.+.+.
T Consensus 320 ~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 320 IL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp ES-SCHHHHHHHC----
T ss_pred Ee-CcHHHHHHHHHHhc
Confidence 65 44445555554443
No 26
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.64 E-value=3.4e-16 Score=121.54 Aligned_cols=96 Identities=20% Similarity=0.287 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.+...|...|+++..+||+++..+|.+++++|+++. .. +|++|+++++|+|++.+++||++++||++..+.|++||
T Consensus 289 ~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR 366 (410)
T 2j0s_A 289 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA-SR-VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGR 366 (410)
T ss_dssp HHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS-SC-EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC-CC-EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhccc
Confidence 46678899999999999999999999999999998766 33 66788999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEEEEEeCCC
Q 032027 82 CHRIGQTRPVTIYRLVTKGT 101 (148)
Q Consensus 82 ~~R~Gq~~~v~v~~l~~~~t 101 (148)
++|.|++. .++.++.+..
T Consensus 367 ~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 367 SGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp SSGGGCCE--EEEEEEEGGG
T ss_pred ccCCCCce--EEEEEecHHH
Confidence 99999764 4556666553
No 27
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.64 E-value=2.1e-16 Score=120.41 Aligned_cols=96 Identities=18% Similarity=0.295 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.+.+.|+..|+++..+||+++.++|.++++.|+++. .. +|++|+++++|+|++.+++||++++||++..+.|++||
T Consensus 251 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR 328 (367)
T 1hv8_A 251 TKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK-IR-ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGR 328 (367)
T ss_dssp HHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS-SS-EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTT
T ss_pred HHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCC-Ce-EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccc
Confidence 35678889999999999999999999999999998765 33 66677999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEEEEEeCCC
Q 032027 82 CHRIGQTRPVTIYRLVTKGT 101 (148)
Q Consensus 82 ~~R~Gq~~~v~v~~l~~~~t 101 (148)
++|.|+...+ +.++.+..
T Consensus 329 ~~R~g~~g~~--~~~~~~~~ 346 (367)
T 1hv8_A 329 TGRAGKKGKA--ISIINRRE 346 (367)
T ss_dssp TCCSSSCCEE--EEEECTTS
T ss_pred cccCCCccEE--EEEEcHHH
Confidence 9999987655 44555553
No 28
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.63 E-value=8.9e-16 Score=126.77 Aligned_cols=114 Identities=17% Similarity=0.147 Sum_probs=82.7
Q ss_pred HHHHHHHHHhc------CCeEEEEeCC--------CCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeC
Q 032027 2 LDILEWTLDVI------GVTYRRLDGS--------TQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHD 67 (148)
Q Consensus 2 l~~l~~~L~~~------~~~~~~~~G~--------~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d 67 (148)
.+.|.+.|... |+++..+||+ ++..+|.+++++|+++. .. +|++|+++++|+|++.+++||+||
T Consensus 413 ~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~-~~-VLVaT~~~~~GIDip~v~~VI~~d 490 (699)
T 4gl2_A 413 AYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK-IN-LLIATTVAEEGLDIKECNIVIRYG 490 (699)
T ss_dssp HHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC----C-CSEEECSCCTTSCCCSCCCCEEES
T ss_pred HHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC-Cc-EEEEccccccCCccccCCEEEEeC
Confidence 46677888877 8999999999 99999999999998865 34 567889999999999999999999
Q ss_pred CCCCcchHHHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Q 032027 68 MDFNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAVL 121 (148)
Q Consensus 68 ~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~~K~~~~~~~~ 121 (148)
+|||+..+.|++||++|.| ..++.+...++.+.........+..++...+
T Consensus 491 ~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (699)
T 4gl2_A 491 LVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDFREKMMYKAI 540 (699)
T ss_dssp CCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999975544 3444455555544443333334444444433
No 29
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.63 E-value=2.8e-15 Score=115.20 Aligned_cols=93 Identities=23% Similarity=0.312 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCC------CcchH
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDF------NPQID 75 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~------~~~~~ 75 (148)
.+.+...|+..++++..+||+++.++|.+++++|+++. .. +|++|+++++|+|++.+++||++++|| ++..+
T Consensus 256 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~ 333 (395)
T 3pey_A 256 ANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR-SK-VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATY 333 (395)
T ss_dssp HHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS-CC-EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHH
T ss_pred HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCC-CC-EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHh
Confidence 35678899999999999999999999999999998766 33 677889999999999999999999999 99999
Q ss_pred HHHHHhhhhcCCCCcEEEEEEEe
Q 032027 76 RQAEDRCHRIGQTRPVTIYRLVT 98 (148)
Q Consensus 76 ~Q~~gR~~R~Gq~~~v~v~~l~~ 98 (148)
.|++||++|.|+...+ +.++.
T Consensus 334 ~Qr~GR~gR~g~~g~~--~~~~~ 354 (395)
T 3pey_A 334 IHRIGRTGRFGRKGVA--ISFVH 354 (395)
T ss_dssp HHHHTTSSCTTCCEEE--EEEEC
T ss_pred hHhccccccCCCCceE--EEEEe
Confidence 9999999999976444 44444
No 30
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.63 E-value=7e-16 Score=119.31 Aligned_cols=95 Identities=14% Similarity=0.232 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.+...|...|+.+..+||+++..+|.++++.|+++. .. +|++|+++++|+|++.+++||++++||++..+.|++||
T Consensus 271 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR 348 (400)
T 1s2m_A 271 VELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK-VR-TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGR 348 (400)
T ss_dssp HHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS-SS-EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCB
T ss_pred HHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC-Cc-EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcch
Confidence 45678889999999999999999999999999998766 33 66777999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEEEEEeCC
Q 032027 82 CHRIGQTRPVTIYRLVTKG 100 (148)
Q Consensus 82 ~~R~Gq~~~v~v~~l~~~~ 100 (148)
++|.|+. -.++.++.++
T Consensus 349 ~gR~g~~--g~~~~l~~~~ 365 (400)
T 1s2m_A 349 SGRFGHL--GLAINLINWN 365 (400)
T ss_dssp SSCTTCC--EEEEEEECGG
T ss_pred hcCCCCC--ceEEEEeccc
Confidence 9999976 4456667665
No 31
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.62 E-value=5.6e-16 Score=120.35 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.+.+.|...|+++..+||+++.++|.+++++|+++. .. +|++|+++++|+|++.+++||++++||++..|.|++||
T Consensus 289 ~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~-vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR 366 (417)
T 2i4i_A 289 ADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK-SP-ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 366 (417)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS-SC-EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC-CC-EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCc
Confidence 35678889999999999999999999999999998765 33 67778999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEEEEEeCC
Q 032027 82 CHRIGQTRPVTIYRLVTKG 100 (148)
Q Consensus 82 ~~R~Gq~~~v~v~~l~~~~ 100 (148)
++|.|+. -.++.++.+.
T Consensus 367 ~gR~g~~--g~~~~~~~~~ 383 (417)
T 2i4i_A 367 TGRVGNL--GLATSFFNER 383 (417)
T ss_dssp BCC--CC--EEEEEEECGG
T ss_pred cccCCCC--ceEEEEEccc
Confidence 9999976 4455566544
No 32
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=117.48 Aligned_cols=95 Identities=20% Similarity=0.262 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.+.+.|...++.+..+||+++.++|.++++.|+++. .. +|++|+++++|+|++.+++||++++||++..|.|++||
T Consensus 293 ~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR 370 (414)
T 3eiq_A 293 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS-SR-VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 370 (414)
T ss_dssp HHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCC
T ss_pred HHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC-Cc-EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCc
Confidence 35678889999999999999999999999999998765 33 67788999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEEEEEeCC
Q 032027 82 CHRIGQTRPVTIYRLVTKG 100 (148)
Q Consensus 82 ~~R~Gq~~~v~v~~l~~~~ 100 (148)
++|.|+... ++.++.+.
T Consensus 371 ~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 371 GGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp C-------C--EEEEECST
T ss_pred ccCCCCCce--EEEEEcHH
Confidence 999998754 45566655
No 33
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.57 E-value=8.8e-15 Score=117.99 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHh
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR 81 (148)
.+.+.+.|...|+++..+||+++.++|.++.++|.++. .. +|++|.++++|+|++++++||++++|+++..|.|++||
T Consensus 249 ~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~-vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GR 326 (523)
T 1oyw_A 249 VEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD-LQ-IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGR 326 (523)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCC-Ce-EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhcc
Confidence 35678899999999999999999999999999999876 34 66777999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEE
Q 032027 82 CHRIGQTRPVTI 93 (148)
Q Consensus 82 ~~R~Gq~~~v~v 93 (148)
++|.|+...+.+
T Consensus 327 aGR~g~~~~~~l 338 (523)
T 1oyw_A 327 AGRDGLPAEAML 338 (523)
T ss_dssp SCTTSSCEEEEE
T ss_pred ccCCCCCceEEE
Confidence 999998765544
No 34
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.57 E-value=1.4e-14 Score=112.05 Aligned_cols=106 Identities=18% Similarity=0.260 Sum_probs=85.3
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCc------chH
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNP------QID 75 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~------~~~ 75 (148)
.+.+...|...++.+..+||+++.++|.++++.|+++. .. +|++|+++++|+|++.+++||++++||++ ..|
T Consensus 279 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~ 356 (412)
T 3fht_A 279 ASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK-EK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETY 356 (412)
T ss_dssp HHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS-CS-EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHH
T ss_pred HHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC-Cc-EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchhee
Confidence 35678889999999999999999999999999998766 33 67788999999999999999999999876 589
Q ss_pred HHHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 032027 76 RQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKR 112 (148)
Q Consensus 76 ~Q~~gR~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~~ 112 (148)
.|++||++|.|+.. .++.++.. .-+...++.+.+
T Consensus 357 ~Qr~GR~gR~g~~g--~~~~~~~~-~~~~~~~~~i~~ 390 (412)
T 3fht_A 357 LHRIGRTGRFGKRG--LAVNMVDS-KHSMNILNRIQE 390 (412)
T ss_dssp HHHHTTSSCTTCCE--EEEEEECS-HHHHHHHHHHHH
T ss_pred ecccCcccCCCCCc--eEEEEEcC-hhhHHHHHHHHH
Confidence 99999999999764 34445543 223444444443
No 35
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.55 E-value=6.8e-15 Score=121.42 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcC----CeEEEEeC--------CCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCC
Q 032027 2 LDILEWTLDVIG----VTYRRLDG--------STQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMD 69 (148)
Q Consensus 2 l~~l~~~L~~~~----~~~~~~~G--------~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~ 69 (148)
.+.|.+.|...+ +++..++| +++.++|.+++++|++++... +|++|+++++|+|++.+++||+||+|
T Consensus 411 ~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~-vLVaT~v~~~GiDip~v~~VI~~d~p 489 (696)
T 2ykg_A 411 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN-ILIATSVADEGIDIAQCNLVILYEYV 489 (696)
T ss_dssp HHHHHHHHHHCTTCCSCCEEC-----------------------------CCS-CSEEEESSCCC---CCCSEEEEESCC
T ss_pred HHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc-EEEEechhhcCCcCccCCEEEEeCCC
Confidence 467888898888 88888854 999999999999998733345 46778999999999999999999999
Q ss_pred CCcchHHHHHHhhhhcCCCCcEEEEEEEeCCCHHH
Q 032027 70 FNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTVDE 104 (148)
Q Consensus 70 ~~~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~t~ee 104 (148)
||+..|.||+|| +|. ++..++.++.+++.++
T Consensus 490 ~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 490 GNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp --CCCC-------------CCCEEEEEESCHHHHH
T ss_pred CCHHHHHHhhcc-CcC---CCceEEEEecCCCHHH
Confidence 999999999999 885 5677888888877654
No 36
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=3.6e-14 Score=115.33 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=84.5
Q ss_pred HHHHHHHHhc---CCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHH
Q 032027 3 DILEWTLDVI---GVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAE 79 (148)
Q Consensus 3 ~~l~~~L~~~---~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~ 79 (148)
+.+.+.|... ++++..+||+++..+|.+++++|+++. .. +|++|+++++|+|++.+++||++++|+++..|.|++
T Consensus 302 ~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~-~~-vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~ 379 (579)
T 3sqw_A 302 SFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE-SG-ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 379 (579)
T ss_dssp HHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS-SE-EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHH
T ss_pred HHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC-Ce-EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhc
Confidence 4567777776 899999999999999999999998766 33 677789999999999999999999999999999999
Q ss_pred HhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 032027 80 DRCHRIGQTRPVTIYRLVTKGTVDENVYEIAK 111 (148)
Q Consensus 80 gR~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~ 111 (148)
||++|.|+... ++.++.+. |...++.+.
T Consensus 380 GRagR~g~~g~--~i~~~~~~--e~~~~~~l~ 407 (579)
T 3sqw_A 380 GRTARSGKEGS--SVLFICKD--ELPFVRELE 407 (579)
T ss_dssp TTSSCTTCCEE--EEEEEEGG--GHHHHHHHH
T ss_pred cccccCCCCce--EEEEEccc--HHHHHHHHH
Confidence 99999997644 44455544 444444443
No 37
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.55 E-value=4.3e-14 Score=114.14 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=84.3
Q ss_pred HHHHHHHHhc---CCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHH
Q 032027 3 DILEWTLDVI---GVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAE 79 (148)
Q Consensus 3 ~~l~~~L~~~---~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~ 79 (148)
+.+...|... ++++..+||+++..+|.++++.|+++. .. +|++|+++++|+|++.+++||++++|+++..|.|++
T Consensus 353 ~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~-~~-vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~ 430 (563)
T 3i5x_A 353 SFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE-SG-ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 430 (563)
T ss_dssp HHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS-SE-EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHH
T ss_pred HHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC-CC-EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhc
Confidence 4567777776 899999999999999999999998765 33 677789999999999999999999999999999999
Q ss_pred HhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 032027 80 DRCHRIGQTRPVTIYRLVTKGTVDENVYEIAK 111 (148)
Q Consensus 80 gR~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~ 111 (148)
||++|.|+.. ..+.++.+. |...++.+.
T Consensus 431 GRagR~g~~g--~~i~~~~~~--e~~~~~~l~ 458 (563)
T 3i5x_A 431 GRTARSGKEG--SSVLFICKD--ELPFVRELE 458 (563)
T ss_dssp TTSSCTTCCE--EEEEEEEGG--GHHHHHHHH
T ss_pred CccccCCCCc--eEEEEEchh--HHHHHHHHH
Confidence 9999999764 444455554 333444443
No 38
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.54 E-value=1.6e-14 Score=118.12 Aligned_cols=90 Identities=14% Similarity=0.213 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHhh
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRC 82 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR~ 82 (148)
+.+.+.|...|+.+..+||+++.++|.+++++|.++.. . +|++|.++++|+|++++++||++++|+++..|.|++||+
T Consensus 281 e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~-~-VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRa 358 (591)
T 2v1x_A 281 EQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEI-Q-VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRA 358 (591)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSS-S-EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCC-e-EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccC
Confidence 56788899999999999999999999999999987663 3 677779999999999999999999999999999999999
Q ss_pred hhcCCCCcEEEE
Q 032027 83 HRIGQTRPVTIY 94 (148)
Q Consensus 83 ~R~Gq~~~v~v~ 94 (148)
+|.|+...+.++
T Consensus 359 GR~G~~g~~i~l 370 (591)
T 2v1x_A 359 GRDDMKADCILY 370 (591)
T ss_dssp CTTSSCEEEEEE
T ss_pred CcCCCCceEEEE
Confidence 999987555443
No 39
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.53 E-value=5.7e-16 Score=119.26 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHhh
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRC 82 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR~ 82 (148)
+.+.+.|+..++++..+||+++.++|.++++.|+++. .. +|++|+++++|+|++.+++||++++||++..+.|++||+
T Consensus 273 ~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~ 350 (394)
T 1fuu_A 273 EELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS-SR-ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 350 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCC-Cc-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcc
Confidence 4567788888999999999999999999999998765 33 667789999999999999999999999999999999999
Q ss_pred hhcCCCCcEEEEEEEeCC
Q 032027 83 HRIGQTRPVTIYRLVTKG 100 (148)
Q Consensus 83 ~R~Gq~~~v~v~~l~~~~ 100 (148)
+|.|+...+. .++.+.
T Consensus 351 ~R~g~~g~~~--~~~~~~ 366 (394)
T 1fuu_A 351 GRFGRKGVAI--NFVTNE 366 (394)
T ss_dssp ------------------
T ss_pred cCCCCCceEE--EEEchh
Confidence 9999876544 445444
No 40
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.46 E-value=6.8e-14 Score=113.84 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCCe--------EEEEeCCCCHHHHHHHHHHhcCCCC-cceeeeeccccccCcCCCCCCeEEEeCCCCCcc
Q 032027 3 DILEWTLDVIGVT--------YRRLDGSTQVTERQAIVDAFNNDTS-IFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQ 73 (148)
Q Consensus 3 ~~l~~~L~~~~~~--------~~~~~G~~~~~~r~~~~~~F~~~~~-~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~ 73 (148)
+.+.+.|...+.. +..++|.++ ++|.+++++|+++.. ..++|++++++++|+|++.+++||+++++|++.
T Consensus 453 ~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~ 531 (590)
T 3h1t_A 453 DEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMS 531 (590)
T ss_dssp HHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHH
T ss_pred HHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChH
Confidence 4566666655432 678889876 469999999998653 677899999999999999999999999999999
Q ss_pred hHHHHHHhhhhcCC---CCcEEEEEEE
Q 032027 74 IDRQAEDRCHRIGQ---TRPVTIYRLV 97 (148)
Q Consensus 74 ~~~Q~~gR~~R~Gq---~~~v~v~~l~ 97 (148)
.+.|++||++|.|+ +..+.|+.++
T Consensus 532 ~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 532 EFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHHHHHhhhcccCccCCCCEEEEEecC
Confidence 99999999999985 4568888877
No 41
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.45 E-value=2.3e-13 Score=106.02 Aligned_cols=102 Identities=18% Similarity=0.109 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCeEE-EEeCCCCHHHHHHHHHHhcCCCCcceeeee---ccccccCcCCCC-CCeEEEeCCC--CCcchH
Q 032027 3 DILEWTLDVIGVTYR-RLDGSTQVTERQAIVDAFNNDTSIFACLLS---TRAGGQGLNLTG-ADTVVIHDMD--FNPQID 75 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~-~~~G~~~~~~r~~~~~~F~~~~~~~vll~s---~~~~~~Glnl~~-a~~vi~~d~~--~~~~~~ 75 (148)
+.+...|...|+++. .+||. +|. +++|+++. ..+++++ |+++++|+|++. +++||++++| +++..|
T Consensus 266 ~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~-~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y 338 (414)
T 3oiy_A 266 KELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGK-INILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTY 338 (414)
T ss_dssp HHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTS-CSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHH
T ss_pred HHHHHHHHHcCCceehhhcCc----chH--HHHHhCCC-CeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHH
Confidence 567888999999998 88884 444 99998765 5656654 899999999999 9999999999 999999
Q ss_pred HHHHHhhhhcCCC--CcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 032027 76 RQAEDRCHRIGQT--RPVTIYRLVTKGTVDENVYEIAKRKLI 115 (148)
Q Consensus 76 ~Q~~gR~~R~Gq~--~~v~v~~l~~~~t~ee~i~~~~~~K~~ 115 (148)
.|++||++|.|+. +...++.++ . |...++.+.+...
T Consensus 339 ~qr~GR~gR~g~~~~~~g~~i~~~--~--~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 339 IQASGRSSRILNGVLVKGVSVIFE--E--DEEIFESLKTRLL 376 (414)
T ss_dssp HHHHGGGCCEETTEECCEEEEEEC--C--CHHHHHHHHHHHH
T ss_pred HHHhCccccCCCCCCcceEEEEEE--c--cHHHHHHHHHHhc
Confidence 9999999999975 566666666 2 4445555544443
No 42
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.39 E-value=1.1e-12 Score=108.63 Aligned_cols=97 Identities=18% Similarity=0.247 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCC-------------
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDM------------- 68 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~------------- 68 (148)
.+.+...|...++.+..+||++++++|.+.++.|+++.+..-+|++|+++++|+|+ .+++||+++.
T Consensus 333 ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~ 411 (677)
T 3rc3_A 333 IYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGEREL 411 (677)
T ss_dssp HHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------
T ss_pred HHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCcccc
Confidence 35678889999999999999999999999999999733223467777999999999 9999999999
Q ss_pred -CCCcchHHHHHHhhhhcCCC-CcEEEEEEEeC
Q 032027 69 -DFNPQIDRQAEDRCHRIGQT-RPVTIYRLVTK 99 (148)
Q Consensus 69 -~~~~~~~~Q~~gR~~R~Gq~-~~v~v~~l~~~ 99 (148)
|++...+.|+.||++|.|+. .+..+|.+..+
T Consensus 412 ~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 412 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 44667766543
No 43
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.37 E-value=4.6e-14 Score=112.04 Aligned_cols=88 Identities=19% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCc------chHH
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNP------QIDR 76 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~------~~~~ 76 (148)
+.+...|...++.+..+||+++..+|.++++.|+++. .. +|++|+++++|+|++.+++||++|+||++ ..|.
T Consensus 347 ~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~-~~-iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~ 424 (479)
T 3fmp_B 347 SWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK-EK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL 424 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCC-Cc-EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHH
Confidence 4567778888999999999999999999999998766 33 67777999999999999999999999865 6899
Q ss_pred HHHHhhhhcCCCCcEE
Q 032027 77 QAEDRCHRIGQTRPVT 92 (148)
Q Consensus 77 Q~~gR~~R~Gq~~~v~ 92 (148)
|++||++|.|+...+.
T Consensus 425 Qr~GRagR~g~~G~~i 440 (479)
T 3fmp_B 425 HRIGRTGRFGKRGLAV 440 (479)
T ss_dssp ----------------
T ss_pred HHhcccccCCCCceEE
Confidence 9999999999765443
No 44
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.30 E-value=1.1e-11 Score=102.47 Aligned_cols=95 Identities=19% Similarity=0.176 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCC-----CCCcchHH
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDM-----DFNPQIDR 76 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~-----~~~~~~~~ 76 (148)
.+.|.+.|...|+++..+||+++..+|.+++++|..+. +. +|++|+++++|+|++.++.||++|. |+++..|.
T Consensus 452 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~-~~-VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 452 AEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGH-YD-CLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTS-CS-EEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCC-ce-EEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 35678899999999999999999999999999998755 33 6777799999999999999999998 89999999
Q ss_pred HHHHhhhhcCCCCcEEEEEEEeCCC
Q 032027 77 QAEDRCHRIGQTRPVTIYRLVTKGT 101 (148)
Q Consensus 77 Q~~gR~~R~Gq~~~v~v~~l~~~~t 101 (148)
|++||++|.|. -.++.++.+.+
T Consensus 530 Qr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 530 QTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp HHHGGGTTSTT---CEEEEECSSCC
T ss_pred HHHCccCcCCC---CEEEEEEcCCC
Confidence 99999999853 34555665554
No 45
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.29 E-value=3.7e-13 Score=108.02 Aligned_cols=90 Identities=26% Similarity=0.329 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCC------CCcchHH
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMD------FNPQIDR 76 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~------~~~~~~~ 76 (148)
+.+...|...++.+..+||+++..+|.++++.|+++.. . +|++|+++++|+|++.+++||++++| +++..+.
T Consensus 371 ~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~-~-VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~ 448 (508)
T 3fho_A 371 EEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTS-K-VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYL 448 (508)
T ss_dssp THHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSC-C-CCEECC-----CCCTTCCEEEC----CC-----CTHHHH
T ss_pred HHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCC-e-EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHH
Confidence 45778888899999999999999999999999987663 3 67777999999999999999999999 7889999
Q ss_pred HHHHhhhhcCCCCcEEEE
Q 032027 77 QAEDRCHRIGQTRPVTIY 94 (148)
Q Consensus 77 Q~~gR~~R~Gq~~~v~v~ 94 (148)
|++||++|.|+...+.++
T Consensus 449 Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 449 HRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp HTTSCCC-----CEEEEE
T ss_pred HHhhhcCCCCCCcEEEEE
Confidence 999999999976555443
No 46
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.29 E-value=1.4e-11 Score=101.94 Aligned_cols=95 Identities=20% Similarity=0.125 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCC-----CCCcchHH
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDM-----DFNPQIDR 76 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~-----~~~~~~~~ 76 (148)
.+.|.+.|...|+++..+||.++..+|.+++++|.++. +. +|++|+++++|+|++.++.||++|. |+++..|.
T Consensus 458 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~-~~-VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 458 SEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK-YD-VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS-CS-EEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC-eE-EEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 35678899999999999999999999999999998755 33 6777799999999999999999998 89999999
Q ss_pred HHHHhhhhcCCCCcEEEEEEEeCCC
Q 032027 77 QAEDRCHRIGQTRPVTIYRLVTKGT 101 (148)
Q Consensus 77 Q~~gR~~R~Gq~~~v~v~~l~~~~t 101 (148)
|++||++|. ++-.++.++.+.+
T Consensus 536 Qr~GRagR~---~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 536 QTIGRAARN---AEGRVIMYADKIT 557 (661)
T ss_dssp HHHHTTTTS---TTCEEEEECSSCC
T ss_pred HHhCcccCC---CCCEEEEEEeCCC
Confidence 999999997 2344566666654
No 47
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.28 E-value=8.1e-12 Score=107.43 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=75.7
Q ss_pred eEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEE----eCC----CCCcchHHHHHHhhhhcC
Q 032027 15 TYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVI----HDM----DFNPQIDRQAEDRCHRIG 86 (148)
Q Consensus 15 ~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d~----~~~~~~~~Q~~gR~~R~G 86 (148)
.+..+||++++.+|..+.+.|+++. .+ +|++|.++++|+|++.++.||+ ||. ||++..|.|++||++|.|
T Consensus 408 gI~~~Hggl~~~eR~~ve~~F~~G~-ik-VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G 485 (1010)
T 2xgj_A 408 GIGIHHSGLLPILKEVIEILFQEGF-LK-VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 485 (1010)
T ss_dssp TEEEESTTSCHHHHHHHHHHHHTTC-CS-EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTT
T ss_pred CeeEECCCCCHHHHHHHHHHHhcCC-Cc-EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCC
Confidence 3678999999999999999998765 44 5666799999999999999999 999 999999999999999999
Q ss_pred CCCcEEEEEEEeCCC
Q 032027 87 QTRPVTIYRLVTKGT 101 (148)
Q Consensus 87 q~~~v~v~~l~~~~t 101 (148)
+.....++.++.++.
T Consensus 486 ~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 486 LDDRGIVIMMIDEKM 500 (1010)
T ss_dssp TCSSEEEEEEECSCC
T ss_pred CCCceEEEEEECCCC
Confidence 988888998887663
No 48
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.25 E-value=1e-11 Score=108.07 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=79.4
Q ss_pred HHHHHHHHHhc--CCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCC-CCCcchHHHH
Q 032027 2 LDILEWTLDVI--GVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDM-DFNPQIDRQA 78 (148)
Q Consensus 2 l~~l~~~L~~~--~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~-~~~~~~~~Q~ 78 (148)
.+.+.+.|+.. ++++..+||.++..+|.+++++|.++. .. +|++|.++++|+|++.+++||++++ +|++..+.|+
T Consensus 825 ~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~-~~-VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr 902 (1151)
T 2eyq_A 825 IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR-FN-VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 902 (1151)
T ss_dssp HHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTS-CC-EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCC-Cc-EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHH
Confidence 35677788877 789999999999999999999998765 34 6677799999999999999999988 6899999999
Q ss_pred HHhhhhcCCCCcEEEEEEEeC
Q 032027 79 EDRCHRIGQTRPVTIYRLVTK 99 (148)
Q Consensus 79 ~gR~~R~Gq~~~v~v~~l~~~ 99 (148)
.||++|.|+. -++|.++..
T Consensus 903 ~GRvgR~g~~--g~~~ll~~~ 921 (1151)
T 2eyq_A 903 RGRVGRSHHQ--AYAWLLTPH 921 (1151)
T ss_dssp HTTCCBTTBC--EEEEEEECC
T ss_pred HhccCcCCCc--eEEEEEECC
Confidence 9999999876 444555544
No 49
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.9e-11 Score=105.96 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=73.5
Q ss_pred EEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcch--------HHHHHHhhhhcCC
Q 032027 16 YRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQI--------DRQAEDRCHRIGQ 87 (148)
Q Consensus 16 ~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~--------~~Q~~gR~~R~Gq 87 (148)
+..+||++++.+|..+++.|.++. +. +|++|.++++|+|++.+++||+++.+|++.. |.|++||++|.|+
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G~-ik-VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~ 584 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEGF-LK-VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGL 584 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHTC-CC-EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSS
T ss_pred eeeecCCCCHHHHHHHHHHHhCCC-Ce-EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCC
Confidence 678999999999999999998766 34 5667799999999999999999888877664 9999999999999
Q ss_pred CCcEEEEEEEeCCCHHHH
Q 032027 88 TRPVTIYRLVTKGTVDEN 105 (148)
Q Consensus 88 ~~~v~v~~l~~~~t~ee~ 105 (148)
....++|.++.+...+..
T Consensus 585 d~~G~~ill~~~~~~~~~ 602 (1108)
T 3l9o_A 585 DDRGIVIMMIDEKMEPQV 602 (1108)
T ss_dssp CSSEEEEEEECCCCCHHH
T ss_pred CCceEEEEEecCCcCHHH
Confidence 888999988877644433
No 50
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.20 E-value=6.2e-12 Score=105.54 Aligned_cols=89 Identities=18% Similarity=0.128 Sum_probs=72.7
Q ss_pred HHHHHHHHh---cCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCC-CcchHHHH
Q 032027 3 DILEWTLDV---IGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDF-NPQIDRQA 78 (148)
Q Consensus 3 ~~l~~~L~~---~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~-~~~~~~Q~ 78 (148)
+.+.+.|.. .++.+..+||+++.++|.+++++|+++. .. +|++|+++++|+|++++++||++++++ +...+.|+
T Consensus 600 ~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~-~~-ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr 677 (780)
T 1gm5_A 600 VEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGR-YD-ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQL 677 (780)
T ss_dssp HHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTS-SS-BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHH
T ss_pred HHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCC-Ce-EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHH
Confidence 345566766 4778899999999999999999998765 34 667779999999999999999999985 78888899
Q ss_pred HHhhhhcCCCCcEEE
Q 032027 79 EDRCHRIGQTRPVTI 93 (148)
Q Consensus 79 ~gR~~R~Gq~~~v~v 93 (148)
.||++|.|+...+.+
T Consensus 678 ~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 678 RGRVGRGGQEAYCFL 692 (780)
T ss_dssp HHTSCCSSTTCEEEC
T ss_pred hcccCcCCCCCEEEE
Confidence 999999997755443
No 51
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.19 E-value=2.2e-11 Score=102.15 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCC--------CCCeEEEeCCCCCcc
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLT--------GADTVVIHDMDFNPQ 73 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~--------~a~~vi~~d~~~~~~ 73 (148)
.+.|...|...|+++..+||.....+|..+..+|+.+ . ++++|+++|+|+|+. +..+||++|.|-++.
T Consensus 445 se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g---~-VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r 520 (844)
T 1tf5_A 445 SELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG---A-VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRR 520 (844)
T ss_dssp HHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT---C-EEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHH
T ss_pred HHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC---e-EEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHH
Confidence 3678999999999999999998766665444455432 3 577779999999998 788999999999999
Q ss_pred hHHHHHHhhhhcCCCCc
Q 032027 74 IDRQAEDRCHRIGQTRP 90 (148)
Q Consensus 74 ~~~Q~~gR~~R~Gq~~~ 90 (148)
.|.|++||++|.|.+..
T Consensus 521 ~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 521 IDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp HHHHHHTTSSGGGCCEE
T ss_pred HHHhhcCccccCCCCCe
Confidence 99999999999998754
No 52
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.18 E-value=8.9e-11 Score=97.49 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=71.4
Q ss_pred CeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEE----eC-------CCCCcchHHHHHHhh
Q 032027 14 VTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVI----HD-------MDFNPQIDRQAEDRC 82 (148)
Q Consensus 14 ~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d-------~~~~~~~~~Q~~gR~ 82 (148)
..+..+||+++.++|..+.+.|.++. .+ +|++|.+++.|+|++..++||. |+ .|+++..+.|+.||+
T Consensus 313 ~~v~~~h~~l~~~~r~~v~~~f~~g~-~~-vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 313 KGVAYHHAGLSKALRDLIEEGFRQRK-IK-VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTC-SC-EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred cCEEEECCCCCHHHHHHHHHHHHcCC-Ce-EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 35788999999999999999998765 34 6677799999999999999998 88 799999999999999
Q ss_pred hhcCCCCcEEEEEEEeCCC
Q 032027 83 HRIGQTRPVTIYRLVTKGT 101 (148)
Q Consensus 83 ~R~Gq~~~v~v~~l~~~~t 101 (148)
+|.|+.++..+|.++.+..
T Consensus 391 GR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CCTTTCSCEEEEEECSCGG
T ss_pred CCCCCCCCceEEEEeCCch
Confidence 9999988888888887654
No 53
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.16 E-value=5.5e-11 Score=98.66 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=75.8
Q ss_pred eEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEE----eC---CCCCcchHHHHHHhhhhcCC
Q 032027 15 TYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVI----HD---MDFNPQIDRQAEDRCHRIGQ 87 (148)
Q Consensus 15 ~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d---~~~~~~~~~Q~~gR~~R~Gq 87 (148)
.+..+||+++.++|..+.+.|.++. .+ +|++|.+++.|+|++..+.||. || .|+++..+.|+.||++|.|+
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~-~~-vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~ 375 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGN-IK-VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGM 375 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTS-CC-EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTT
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCC-Ce-EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCC
Confidence 4566999999999999999998765 34 6677799999999999999998 66 78899999999999999999
Q ss_pred CCcEEEEEEEeCCCHH
Q 032027 88 TRPVTIYRLVTKGTVD 103 (148)
Q Consensus 88 ~~~v~v~~l~~~~t~e 103 (148)
.++..+|.++.+...+
T Consensus 376 ~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 376 DERGEAIIIVGKRDRE 391 (702)
T ss_dssp CSCEEEEEECCGGGHH
T ss_pred CCCceEEEEecCccHH
Confidence 8888999998877644
No 54
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.15 E-value=8.3e-11 Score=97.82 Aligned_cols=89 Identities=13% Similarity=0.009 Sum_probs=77.3
Q ss_pred CeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEE----eC----CCCCcchHHHHHHhhhhc
Q 032027 14 VTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVI----HD----MDFNPQIDRQAEDRCHRI 85 (148)
Q Consensus 14 ~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d----~~~~~~~~~Q~~gR~~R~ 85 (148)
..+..+||+++.++|..+.+.|.++. .+ +|++|.+++.|+|++..++||. || .|+++..+.|+.||++|.
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~-~~-vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~ 372 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGI-IK-AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRP 372 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTS-SC-EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCC-Ce-EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCC
Confidence 35788999999999999999998765 34 5667799999999999999988 76 588999999999999999
Q ss_pred CCCCcEEEEEEEeCCCHHH
Q 032027 86 GQTRPVTIYRLVTKGTVDE 104 (148)
Q Consensus 86 Gq~~~v~v~~l~~~~t~ee 104 (148)
|+.++..+|.++.+...+.
T Consensus 373 g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 373 KYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp TTCSEEEEEEECSSSCHHH
T ss_pred CCCCCceEEEEecCccHHH
Confidence 9988888999988877554
No 55
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.13 E-value=1.2e-10 Score=96.57 Aligned_cols=86 Identities=19% Similarity=0.285 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCC--------CCCeEEEeCCCCCcc
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLT--------GADTVVIHDMDFNPQ 73 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~--------~a~~vi~~d~~~~~~ 73 (148)
.+.|...|+..|+++..+||+....++..+..+|+.+ . ++++|+.+|+|+|+. +..+||++++|-++.
T Consensus 487 sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g---~-VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r 562 (822)
T 3jux_A 487 SELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG---M-VTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRR 562 (822)
T ss_dssp HHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT---C-EEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHH
T ss_pred HHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC---e-EEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHH
Confidence 3678899999999999999986544444444555433 2 677789999999997 667999999999999
Q ss_pred hHHHHHHhhhhcCCCCcE
Q 032027 74 IDRQAEDRCHRIGQTRPV 91 (148)
Q Consensus 74 ~~~Q~~gR~~R~Gq~~~v 91 (148)
.|.|++||++|.|.+...
T Consensus 563 ~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 563 IDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp HHHHHHTTSSCSSCCCEE
T ss_pred HHHHhhCccccCCCCeeE
Confidence 999999999999988643
No 56
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.09 E-value=1.6e-10 Score=91.56 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeC---------------
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHD--------------- 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d--------------- 67 (148)
+.+.+.|+..|+++..+||... .++++.|+++. .. +|++|+++++|+|++. ++||+++
T Consensus 202 ~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~-~~-vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 202 NDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTD-WD-FVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSC-CS-EEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCC-ce-EEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 5678889999999999999754 57899998765 33 6778899999999999 9999988
Q ss_pred -----CCCCcchHHHHHHhhhhcCCCC
Q 032027 68 -----MDFNPQIDRQAEDRCHRIGQTR 89 (148)
Q Consensus 68 -----~~~~~~~~~Q~~gR~~R~Gq~~ 89 (148)
.|.++..|.|++||++|.|...
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred eecccccCCHHHHHHhccccCCCCCCC
Confidence 8899999999999999999743
No 57
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.09 E-value=5e-11 Score=94.20 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEE-----------------
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVI----------------- 65 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----------------- 65 (148)
+.+.+.|+..++++..+|| ++|.+++++|+++. .. +|++|+++++|+|++ +++||+
T Consensus 191 ~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~-~~-vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~v 263 (440)
T 1yks_A 191 NVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKK-PD-FILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVA 263 (440)
T ss_dssp HHHHHHHHHTTCCEEECCS----SSCC--------CC-CS-EEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEE
T ss_pred HHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCC-ce-EEEECChhheeeccC-ceEEEeCCccceeeeccccccee
Confidence 5677889999999999999 36888999998765 33 677789999999999 999985
Q ss_pred --eCCCCCcchHHHHHHhhhhcCC
Q 032027 66 --HDMDFNPQIDRQAEDRCHRIGQ 87 (148)
Q Consensus 66 --~d~~~~~~~~~Q~~gR~~R~Gq 87 (148)
++.|.++..|.|+.||++|.|.
T Consensus 264 i~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 264 IKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTT
T ss_pred eccccccCHHHHHHhccccCCCCC
Confidence 8899999999999999999853
No 58
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.07 E-value=1.3e-10 Score=96.18 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEE-----------------
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVI----------------- 65 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----------------- 65 (148)
+.+.+.|+..++++..+||. +|.+++++|.++. .. +|++|+++++|+|++ +++||+
T Consensus 424 e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~-~~-VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~ 496 (673)
T 2wv9_A 424 NEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGD-WD-FVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRV 496 (673)
T ss_dssp HHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCC-CS-EEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEE
T ss_pred HHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCC-ce-EEEECchhhcceeeC-CcEEEECCCcccceeeecccccc
Confidence 56788899999999999993 7899999998765 33 667779999999999 999997
Q ss_pred ---eCCCCCcchHHHHHHhhhhc-CCCCcE
Q 032027 66 ---HDMDFNPQIDRQAEDRCHRI-GQTRPV 91 (148)
Q Consensus 66 ---~d~~~~~~~~~Q~~gR~~R~-Gq~~~v 91 (148)
++.|.++..|.|+.||++|. |+...+
T Consensus 497 ~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~a 526 (673)
T 2wv9_A 497 ILSVPSAITSASAAQRRGRVGRNPSQIGDE 526 (673)
T ss_dssp EECCSEECCHHHHHHHHTTSSCCSSCCCEE
T ss_pred eecccCCCCHHHHHHHhhccCCCCCCCCEE
Confidence 56888899999999999999 444333
No 59
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.07 E-value=2.7e-10 Score=97.91 Aligned_cols=90 Identities=20% Similarity=0.194 Sum_probs=73.7
Q ss_pred eEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCC---------CcchHHHHHHhhhhc
Q 032027 15 TYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDF---------NPQIDRQAEDRCHRI 85 (148)
Q Consensus 15 ~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~---------~~~~~~Q~~gR~~R~ 85 (148)
.+..+||++++.+|..+.+.|.++. .. +|++|.++++|+|++. .++|+++.+. ++..|.|++||++|.
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~~G~-~k-VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~ 477 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFSKGF-IK-VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 477 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTC-CS-EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCT
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCC-Cc-EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccC
Confidence 5688999999999999999998766 34 5667799999999999 6677655555 899999999999999
Q ss_pred CCCCcEEEEEEEeCCCHHHHHH
Q 032027 86 GQTRPVTIYRLVTKGTVDENVY 107 (148)
Q Consensus 86 Gq~~~v~v~~l~~~~t~ee~i~ 107 (148)
|+.....++.+...+..+...+
T Consensus 478 G~~~~G~vi~l~~~~~~~~~~~ 499 (997)
T 4a4z_A 478 GLDSTGTVIVMAYNSPLSIATF 499 (997)
T ss_dssp TTCSSEEEEEECCSSCCCHHHH
T ss_pred CCCcceEEEEecCCCcchHHHH
Confidence 9988888888876554444433
No 60
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.06 E-value=2.6e-10 Score=98.94 Aligned_cols=61 Identities=11% Similarity=0.012 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCeEE-EEeCCCCHHHHHHHHHHhcCCCCcceeeee---ccccccCcCCCC-CCeEEEeCCCC
Q 032027 3 DILEWTLDVIGVTYR-RLDGSTQVTERQAIVDAFNNDTSIFACLLS---TRAGGQGLNLTG-ADTVVIHDMDF 70 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~-~~~G~~~~~~r~~~~~~F~~~~~~~vll~s---~~~~~~Glnl~~-a~~vi~~d~~~ 70 (148)
+.+...|...|+++. .+|| +|.+ +++|.++. ..||+++ |+++++|+|+++ +++||+||+|-
T Consensus 323 ~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~-~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 323 KELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGK-INILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTS-CSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCC-CCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 567889999999998 8888 3555 99998766 4555553 899999999999 99999999997
No 61
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.05 E-value=7e-11 Score=93.79 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=70.6
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEE-----------------
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVI----------------- 65 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----------------- 65 (148)
+.+.+.|+..++++..+||. +|.++++.|.++. .. +|++|+++++|+|++. ++||+
T Consensus 204 ~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~-~~-iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~ 276 (459)
T 2z83_A 204 NEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGD-WD-FVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRV 276 (459)
T ss_dssp HHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCC-CS-EEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEE
T ss_pred HHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCC-ce-EEEECChHHhCeecCC-CEEEECCccccccccccccccc
Confidence 56788899999999999995 6778899998765 33 6778899999999998 99998
Q ss_pred ---eCCCCCcchHHHHHHhhhhcCCCCcEEEEEEEeCC
Q 032027 66 ---HDMDFNPQIDRQAEDRCHRIGQTRPVTIYRLVTKG 100 (148)
Q Consensus 66 ---~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~ 100 (148)
+++|.++..|.|++||++|.|... -..|.++...
T Consensus 277 ~~~~d~p~s~~~~~QR~GRaGR~g~~~-G~~~~~~~~~ 313 (459)
T 2z83_A 277 ILGNPSPITSASAAQRRGRVGRNPNQV-GDEYHYGGAT 313 (459)
T ss_dssp EECSCEECCHHHHHHHHTTSSCCTTCC-CEEEEECSCC
T ss_pred ccccCCCCCHHHHHHhccccCCCCCCC-CeEEEEEccc
Confidence 779999999999999999999632 3334555544
No 62
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.04 E-value=3.7e-10 Score=97.59 Aligned_cols=105 Identities=11% Similarity=0.019 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeee---ccccccCcCCCCC-CeEEEeCCC---------
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLS---TRAGGQGLNLTGA-DTVVIHDMD--------- 69 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s---~~~~~~Glnl~~a-~~vi~~d~~--------- 69 (148)
+.+...|+.. +++..+||++ .+++++|.++. ..||+++ |+++++|+|++.+ ++||++++|
T Consensus 289 ~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~-~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~ 361 (1054)
T 1gku_B 289 EEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGE-IDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDI 361 (1054)
T ss_dssp HHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTS-CSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCG
T ss_pred HHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCC-CcEEEEecCCCCeeEeccccCCcccEEEEeCCCccccccccc
Confidence 4567778777 8999999987 36889998765 5666664 8999999999995 999999999
Q ss_pred --------------------------------------------------------------CCcchHHHHHHhhhhcCC
Q 032027 70 --------------------------------------------------------------FNPQIDRQAEDRCHRIGQ 87 (148)
Q Consensus 70 --------------------------------------------------------------~~~~~~~Q~~gR~~R~Gq 87 (148)
.+...|.|++||++|.|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~ 441 (1054)
T 1gku_B 362 DSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFA 441 (1054)
T ss_dssp GGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEET
T ss_pred ccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccC
Confidence 688999999999999887
Q ss_pred CCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 032027 88 TRPVTIYRLVTKGTVDENVYEIAKRKLIL 116 (148)
Q Consensus 88 ~~~v~v~~l~~~~t~ee~i~~~~~~K~~~ 116 (148)
......+.++..+ |..+++.+.++...
T Consensus 442 ~g~~~g~~~~~~~--d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 442 GGLTKGASFLLED--DSELLSAFIERAKL 468 (1054)
T ss_dssp TEECCEEEEEECS--CHHHHHHHHHHHHT
T ss_pred CCCceEEEEEEec--CHHHHHHHHHHHhh
Confidence 6421223333333 45556665555443
No 63
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.04 E-value=2.7e-10 Score=95.52 Aligned_cols=85 Identities=16% Similarity=0.215 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCC---------------------
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGA--------------------- 60 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a--------------------- 60 (148)
.+.|...|+..|+++..+||.....++..+..+|+.+ . ++++|+.+|+|+|+...
T Consensus 454 se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G---~-VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~ 529 (853)
T 2fsf_A 454 SELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA---A-VTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKI 529 (853)
T ss_dssp HHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT---C-EEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---e-EEEecccccCCcCccCCCchHhhhhhcccchhHHHHHH
Confidence 3678999999999999999998877776666777654 2 67788999999999753
Q ss_pred ----------------CeEEEeCCCCCcchHHHHHHhhhhcCCCCc
Q 032027 61 ----------------DTVVIHDMDFNPQIDRQAEDRCHRIGQTRP 90 (148)
Q Consensus 61 ----------------~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~ 90 (148)
.|||+++.|-++..|.|++||++|.|.+..
T Consensus 530 ~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~ 575 (853)
T 2fsf_A 530 KADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGS 575 (853)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred HHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCee
Confidence 599999999999999999999999998754
No 64
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.03 E-value=2.4e-10 Score=93.85 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeE-------------------
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTV------------------- 63 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~v------------------- 63 (148)
+.+.+.|+..++++..+||. +|.+++++|+++. .. +|++|+++++|+|++ +++|
T Consensus 369 ~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~-~~-VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~ 441 (618)
T 2whx_A 369 NDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTD-WD-FVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERV 441 (618)
T ss_dssp HHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSC-CS-EEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCC-cE-EEEECcHHHcCcccC-ceEEEECcceecceecccCCCce
Confidence 56788899999999999984 7888999998765 33 677789999999996 8887
Q ss_pred -EEeCCCCCcchHHHHHHhhhhcCCCCcEEEEEEEe
Q 032027 64 -VIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRLVT 98 (148)
Q Consensus 64 -i~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~l~~ 98 (148)
|+++.|-++..|.||+||++|.|..+. ..|.++.
T Consensus 442 ~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~ 476 (618)
T 2whx_A 442 ILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSG 476 (618)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECS
T ss_pred EEcccccCCHHHHHHhccccCCCCCCCC-eEEEEcc
Confidence 777888899999999999999986433 3455554
No 65
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.01 E-value=2.8e-10 Score=89.62 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCe-----------------EEE
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADT-----------------VVI 65 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~-----------------vi~ 65 (148)
+.+.+.|+..++++..+||. +|.+++++|.++. .. +|++|+++++|+|++ ..+ +|+
T Consensus 185 ~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~-~~-vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~ 257 (431)
T 2v6i_A 185 AEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEK-WD-FVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQ 257 (431)
T ss_dssp HHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSC-CS-EEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCC-Ce-EEEECchHHcCcccC-CcEEEecCccccceecccceeec
Confidence 56778888889999999997 5778999998765 33 677889999999998 544 578
Q ss_pred eCCCCCcchHHHHHHhhhhcCCCCc
Q 032027 66 HDMDFNPQIDRQAEDRCHRIGQTRP 90 (148)
Q Consensus 66 ~d~~~~~~~~~Q~~gR~~R~Gq~~~ 90 (148)
++.|.+...+.|+.||++|.|....
T Consensus 258 ~~~p~~~~~~~Qr~GR~GR~g~~~~ 282 (431)
T 2v6i_A 258 GPIAITPASAAQRRGRIGRNPEKLG 282 (431)
T ss_dssp EEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred ccccCCHHHHHHhhhccCCCCCCCC
Confidence 8999999999999999999986543
No 66
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.00 E-value=1.1e-10 Score=97.94 Aligned_cols=86 Identities=22% Similarity=0.230 Sum_probs=73.3
Q ss_pred cCCeEEEEeCCCCHHHHHHHHHHhc-----CCCCcceeeeeccccccCcCCCCCCeEEEeCC------------------
Q 032027 12 IGVTYRRLDGSTQVTERQAIVDAFN-----NDTSIFACLLSTRAGGQGLNLTGADTVVIHDM------------------ 68 (148)
Q Consensus 12 ~~~~~~~~~G~~~~~~r~~~~~~F~-----~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~------------------ 68 (148)
.++.+..+||+++.++|.++++.|. ++. .-+|++|.++++|+|+++.++||.++.
T Consensus 337 ~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~--~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~ 414 (773)
T 2xau_A 337 GPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPG--RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVS 414 (773)
T ss_dssp CCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCC--EEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHhhcccccCCCCc--eEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccc
Confidence 5788999999999999999999997 433 346777799999999999999999776
Q ss_pred CCCcchHHHHHHhhhhcCCCCcEEEEEEEeCCCH
Q 032027 69 DFNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTV 102 (148)
Q Consensus 69 ~~~~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~t~ 102 (148)
|.+...+.||.||++|. ++-.+|+|+.+...
T Consensus 415 p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 415 PISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp ECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred cCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 88999999999999998 45678888865544
No 67
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.99 E-value=3e-09 Score=89.65 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCC---------------------
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGA--------------------- 60 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a--------------------- 60 (148)
.+.|...|+..|+++..+||.....++..+..+|+.+ . ++++|+.+|+|+|+...
T Consensus 473 sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G---~-VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~ 548 (922)
T 1nkt_A 473 SEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG---G-VTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVET 548 (922)
T ss_dssp HHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT---C-EEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTS
T ss_pred HHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---e-EEEecchhhcCccccCCCCHHHHHHHHHhhcccccccc
Confidence 3678999999999999999998766665566666543 2 57778999999998753
Q ss_pred -------------------------------CeEEEeCCCCCcchHHHHHHhhhhcCCCCc
Q 032027 61 -------------------------------DTVVIHDMDFNPQIDRQAEDRCHRIGQTRP 90 (148)
Q Consensus 61 -------------------------------~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~ 90 (148)
.|||+++.|-++..|.|+.||++|.|....
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~ 609 (922)
T 1nkt_A 549 PEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGE 609 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEE
T ss_pred chhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCee
Confidence 499999999999999999999999998754
No 68
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.80 E-value=2.7e-09 Score=88.06 Aligned_cols=86 Identities=22% Similarity=0.222 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEE----------EeC----
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVV----------IHD---- 67 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi----------~~d---- 67 (148)
.+.+.+.|+..++++..+||+++.++ |.++.. -+|++|+++++|+|+. .++|| +||
T Consensus 409 ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~--~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~ 478 (666)
T 3o8b_A 409 CDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD--VVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPT 478 (666)
T ss_dssp HHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC--EEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSS
T ss_pred HHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC--cEEEECChHHccCCCC-CcEEEecCcccccccccccccc
Confidence 35688899999999999999999764 434332 4777889999999986 88888 666
Q ss_pred -------CCCCcchHHHHHHhhhhcCCCCcEEEEEEEeCCC
Q 032027 68 -------MDFNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGT 101 (148)
Q Consensus 68 -------~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~l~~~~t 101 (148)
.|.++..|.||+||++| |... . |.|+.+..
T Consensus 479 ~gl~~~~~P~s~~syiQRiGRtGR-g~~G--~-i~lvt~~e 515 (666)
T 3o8b_A 479 FTIETTTVPQDAVSRSQRRGRTGR-GRRG--I-YRFVTPGE 515 (666)
T ss_dssp CEEEEEEEECBHHHHHHHHTTBCS-SSCE--E-EEESCCCC
T ss_pred cccccccCcCCHHHHHHHhccCCC-CCCC--E-EEEEecch
Confidence 78889999999999999 6553 3 67777654
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.26 E-value=1.2e-06 Score=78.99 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=65.3
Q ss_pred eEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEE----eC------CCCCcchHHHHHHhhhh
Q 032027 15 TYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVI----HD------MDFNPQIDRQAEDRCHR 84 (148)
Q Consensus 15 ~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d------~~~~~~~~~Q~~gR~~R 84 (148)
.+...||+++..+|..+.+.|.++. .+ +|++|.+++.|+|++....||. |+ .|.++..+.|++||++|
T Consensus 1215 GIa~hHagL~~~~R~~VE~lF~~G~-i~-VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1215 GVGYLHEGLSPMERRLVEQLFSSGA-IQ-VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHHTS-BC-EEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCC
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCC-Ce-EEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccC
Confidence 4667999999999999999998766 45 4556689999999997666552 22 24578899999999999
Q ss_pred cCCCCcEEEEEEEeCC
Q 032027 85 IGQTRPVTIYRLVTKG 100 (148)
Q Consensus 85 ~Gq~~~v~v~~l~~~~ 100 (148)
.|....-.++.+..+.
T Consensus 1293 ~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1293 PLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp TTTCSCEEEEEEEEGG
T ss_pred CCCCCceEEEEEecch
Confidence 9987776666565543
No 70
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.22 E-value=1.5e-06 Score=78.39 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=67.4
Q ss_pred CeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEE----eCC------CCCcchHHHHHHhhh
Q 032027 14 VTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVI----HDM------DFNPQIDRQAEDRCH 83 (148)
Q Consensus 14 ~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d~------~~~~~~~~Q~~gR~~ 83 (148)
..+...||+++.++|..+-+.|.++. .+ +|++|.+++.|+||+..+.||. |++ +.++..+.|++||++
T Consensus 379 ~Gva~HHagL~~~~R~~vE~~F~~G~-i~-vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAG 456 (1724)
T 4f92_B 379 YGFAIHHAGMTRVDRTLVEDLFADKH-IQ-VLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAG 456 (1724)
T ss_dssp TTEEEECSSSCTHHHHHHHHHHHTTC-CC-EEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBS
T ss_pred cCEEEEcCCCCHHHHHHHHHHHHCCC-Ce-EEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhcc
Confidence 34667899999999999999998765 44 5667799999999997776663 443 347888999999999
Q ss_pred hcCCCCcEEEEEEEeCCC
Q 032027 84 RIGQTRPVTIYRLVTKGT 101 (148)
Q Consensus 84 R~Gq~~~v~v~~l~~~~t 101 (148)
|.|....-.++.+...+.
T Consensus 457 R~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 457 RPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp CTTTCSCEEEEEEEESTT
T ss_pred CCCCCCccEEEEEecchh
Confidence 999876666666665554
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.02 E-value=9.3e-06 Score=70.22 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEEeCCCCCcchHHHHHHhhhhcCCC-Cc-EEEEEEEe
Q 032027 27 ERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQT-RP-VTIYRLVT 98 (148)
Q Consensus 27 ~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~-~~-v~v~~l~~ 98 (148)
.|..++++|+++. +. +|+.++...+|+|.+.+ +++++|.|.+...+.|++||+.|.+.. |+ ..|+.++.
T Consensus 637 ~R~~i~~~Fk~g~-i~-ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 637 YYRDLAQRVKNQD-ID-LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHHHTTS-SS-EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHHHHHHHHcCC-Ce-EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 4788899998765 45 55566999999999999 678899999999999999999999864 44 77777763
No 72
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=96.30 E-value=0.0056 Score=49.34 Aligned_cols=53 Identities=6% Similarity=0.262 Sum_probs=28.2
Q ss_pred EEEeCCCCHHHHHHHHHHhcCCCCcceee-eeccccccCcCCCC----CCeEEEeCCCCCcc
Q 032027 17 RRLDGSTQVTERQAIVDAFNNDTSIFACL-LSTRAGGQGLNLTG----ADTVVIHDMDFNPQ 73 (148)
Q Consensus 17 ~~~~G~~~~~~r~~~~~~F~~~~~~~vll-~s~~~~~~Glnl~~----a~~vi~~d~~~~~~ 73 (148)
+.+.|.. .+|.+.+++|+.++ .+++ +.+.+.++|+|+++ +..||++.+|+.+.
T Consensus 409 ~~~q~~~--~~~~~~l~~f~~~~--~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 409 VIEENKK--TRHEEVLELMKTGK--YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp EEESTTT--CCHHHHHHHHHTSC--CEEEEEC---------------CEEEEEEESCCCCCT
T ss_pred eEecCCC--CcHHHHHHHHhcCC--eEEEEEecCceecceecCCCcccccEEEEECCCCCCC
Confidence 3445554 36888999998754 3343 26689999999986 78899999997554
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=94.15 E-value=0.14 Score=43.90 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=28.4
Q ss_pred eEEEeCCCCCcchHHHHHHhhhhcCCCCcEEEE
Q 032027 62 TVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIY 94 (148)
Q Consensus 62 ~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 94 (148)
|||-.+.+-|.....|.-||++|.|.......|
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~ 694 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFY 694 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEE
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEE
Confidence 788889899999999999999999988765444
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=92.74 E-value=0.29 Score=40.10 Aligned_cols=46 Identities=13% Similarity=0.291 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHhcCCCCcceeeee-ccccccCcCCCC--CCeEEEeCCCCC
Q 032027 24 QVTERQAIVDAFNNDTSIFACLLS-TRAGGQGLNLTG--ADTVVIHDMDFN 71 (148)
Q Consensus 24 ~~~~r~~~~~~F~~~~~~~vll~s-~~~~~~Glnl~~--a~~vi~~d~~~~ 71 (148)
+..++.+.+++|. +++ .|++.. ..+.++|+|+++ +..||+..+|+-
T Consensus 480 ~~~~~~~ll~~f~-~~~-~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp 528 (620)
T 4a15_A 480 DQKELYSMLKKFR-RDH-GTIFAVSGGRLSEGINFPGNELEMIILAGLPFP 528 (620)
T ss_dssp CSHHHHHHHHHHT-TSC-CEEEEETTSCC--------CCCCEEEESSCCCC
T ss_pred ChhHHHHHHHHhc-cCC-cEEEEEecCceeccccCCCCceEEEEEEcCCCC
Confidence 3567999999998 432 444443 358999999965 889999988874
No 75
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=80.24 E-value=3.5 Score=34.74 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEE
Q 032027 4 ILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVI 65 (148)
Q Consensus 4 ~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 65 (148)
.+...+...|+++..++|+.+..+|...+....++. +.++++++......+.+.....+|+
T Consensus 436 ~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~-~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 436 RTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ-IDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp HHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC-CCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred HHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC-CCEEEECHHHHhhhhhccCCceEEe
Confidence 344555556899999999999999998888887654 5667777665555556666655554
No 76
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=65.00 E-value=20 Score=21.43 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeee
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLL 46 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~ 46 (148)
......+|+.+|++|..++=...++.++...+.-.....++++++
T Consensus 17 C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i 61 (92)
T 2lqo_A 17 CLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF 61 (92)
T ss_dssp HHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE
T ss_pred HHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE
Confidence 356788999999999999988887777765554322234555554
No 77
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=63.55 E-value=23 Score=22.52 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhc
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFN 36 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~ 36 (148)
..+..+|+.+|++|..++=+..++.|....++..
T Consensus 20 ~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 20 QDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 4677899999999999999999999999998883
No 78
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=62.40 E-value=28 Score=26.52 Aligned_cols=94 Identities=14% Similarity=0.063 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCeEEEEeCCC------CHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGST------QVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~------~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|...|+....+.|++ +.+||.++++...+ ++.+.|+..... +-.+-+.+ ..|+.+....
T Consensus 83 ~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~ 162 (360)
T 4dpp_A 83 DDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 162 (360)
T ss_dssp HHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 345567778899998998874 77899988877653 333454442211 11122222 2478888888
Q ss_pred CCCCcchHHHHHHhhhhcCCCCcEEEEEE
Q 032027 68 MDFNPQIDRQAEDRCHRIGQTRPVTIYRL 96 (148)
Q Consensus 68 ~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~l 96 (148)
|.|++.....-..-...+-..-++.+|+.
T Consensus 163 PyY~k~sq~gl~~hf~~IA~a~PiilYNi 191 (360)
T 4dpp_A 163 PYYGKTSIEGLIAHFQSVLHMGPTIIYNV 191 (360)
T ss_dssp CCSSCCCHHHHHHHHHTTGGGSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 88876655433332222322347888875
No 79
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=62.38 E-value=38 Score=26.93 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCCcceeeee-ccccccCcCCC---C--CCeEEEeCCCCCcc
Q 032027 28 RQAIVDAFNNDTSIFACLLS-TRAGGQGLNLT---G--ADTVVIHDMDFNPQ 73 (148)
Q Consensus 28 r~~~~~~F~~~~~~~vll~s-~~~~~~Glnl~---~--a~~vi~~d~~~~~~ 73 (148)
+.+.++.|...++ .|+++. ..+..+|+|++ + +..||+..+|+-+.
T Consensus 426 ~~~~~~~~~~~~~-~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~ 476 (551)
T 3crv_A 426 VEDLYSAISANNK-VLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP 476 (551)
T ss_dssp HHHHHHHTTSSSS-CEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC
T ss_pred HHHHHHHHHhcCC-eEEEEEecceecccccccccCCcceeEEEEEcCCCCCC
Confidence 4557888864443 334443 26899999999 3 78899999888544
No 80
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=60.65 E-value=24 Score=22.23 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=28.7
Q ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCC
Q 032027 6 EWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDT 39 (148)
Q Consensus 6 ~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~ 39 (148)
..-++..|+.++.+++....+.|.+.++.|...+
T Consensus 19 vreikrqgvrvvllysdqdekrrrerleefekqg 52 (162)
T 2l82_A 19 VREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQG 52 (162)
T ss_dssp HHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcC
Confidence 3445778999999999999999999999997644
No 81
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=60.24 E-value=7 Score=23.73 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=7.3
Q ss_pred HHHHHHHHhcCCeE
Q 032027 3 DILEWTLDVIGVTY 16 (148)
Q Consensus 3 ~~l~~~L~~~~~~~ 16 (148)
+.+...|+..|+.+
T Consensus 17 ~~l~~~L~~~g~~v 30 (127)
T 3i42_A 17 ETFKELLEMLGFQA 30 (127)
T ss_dssp HHHHHHHHHTTEEE
T ss_pred HHHHHHHHHcCCCE
Confidence 34555555555543
No 82
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=59.90 E-value=26 Score=21.13 Aligned_cols=18 Identities=6% Similarity=-0.134 Sum_probs=10.0
Q ss_pred CCCCCcchHHHHHHhhhh
Q 032027 67 DMDFNPQIDRQAEDRCHR 84 (148)
Q Consensus 67 d~~~~~~~~~Q~~gR~~R 84 (148)
.-|+++....+++.++-+
T Consensus 104 ~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 104 VKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp ESSCCHHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHHHHHHh
Confidence 345566666655555544
No 83
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=50.84 E-value=42 Score=21.16 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=28.9
Q ss_pred HHHHHH---HhcCCeEEEEeCCCCHHHHHHHHHHhcCCC
Q 032027 4 ILEWTL---DVIGVTYRRLDGSTQVTERQAIVDAFNNDT 39 (148)
Q Consensus 4 ~l~~~L---~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~ 39 (148)
++.+++ +.+|+.+..++.......|.++...|..++
T Consensus 91 wikdfieeakergvevfvvynnkdddrrkeaqqefrsdg 129 (162)
T 2l82_A 91 WIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDG 129 (162)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcC
Confidence 444444 567999988898889999999999998765
No 84
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=48.66 E-value=20 Score=26.37 Aligned_cols=84 Identities=12% Similarity=0.051 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHhcCCCCcceeeeeccccccCcC--CC--CCCeEEEeCCCCC-cchHHHHHH---hhhhcCCCCcEEEEE
Q 032027 24 QVTERQAIVDAFNNDTSIFACLLSTRAGGQGLN--LT--GADTVVIHDMDFN-PQIDRQAED---RCHRIGQTRPVTIYR 95 (148)
Q Consensus 24 ~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gln--l~--~a~~vi~~d~~~~-~~~~~Q~~g---R~~R~Gq~~~v~v~~ 95 (148)
.++....+.+.+...+. +-+...++. .++. ++ .-..+||+|||+. ...+.+... ..++.-.+..+-+++
T Consensus 122 ~~~a~~~L~~Nl~~~~~--~~V~~~D~~-~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WY 198 (283)
T 2oo3_A 122 HPTEYNFLLKLPHFNKK--VYVNHTDGV-SKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWY 198 (283)
T ss_dssp SHHHHHHHTTSCCTTSC--EEEECSCHH-HHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CHHHHHHHHHHhCcCCc--EEEEeCcHH-HHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEE
Confidence 34445555555654333 334444432 2222 11 2478999999999 456655443 444444455577777
Q ss_pred EEeCCCHHHHHHHHH
Q 032027 96 LVTKGTVDENVYEIA 110 (148)
Q Consensus 96 l~~~~t~ee~i~~~~ 110 (148)
.+....--+.+.+.+
T Consensus 199 Pi~~~~~~~~~~~~l 213 (283)
T 2oo3_A 199 PVVNKAWTEQFLRKM 213 (283)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred eccchHHHHHHHHHH
Confidence 776543323344333
No 85
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=48.18 E-value=39 Score=19.67 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=8.6
Q ss_pred HHHHHHHHhcCCeEE
Q 032027 3 DILEWTLDVIGVTYR 17 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~ 17 (148)
+.+...|...|+.+.
T Consensus 15 ~~l~~~l~~~~~~v~ 29 (116)
T 3a10_A 15 ELLKEELQEEGYEID 29 (116)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCEEE
Confidence 445666666666543
No 86
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=46.73 E-value=83 Score=23.04 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+.+.|+..... +-.+-+.+ ..|+.+....
T Consensus 36 ~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~ 115 (306)
T 1o5k_A 36 ERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVT 115 (306)
T ss_dssp HHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECC
Confidence 34556677789998888885 688999998887753 333454433221 11112222 2578888888
Q ss_pred CCCCcchHHH---HHHhhhhcCCCCcEEEEEEE
Q 032027 68 MDFNPQIDRQ---AEDRCHRIGQTRPVTIYRLV 97 (148)
Q Consensus 68 ~~~~~~~~~Q---~~gR~~R~Gq~~~v~v~~l~ 97 (148)
|.|++..... ....+..-- .-++.+|+.-
T Consensus 116 P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~P 147 (306)
T 1o5k_A 116 PYYNKPTQEGLYQHYKYISERT-DLGIVVYNVP 147 (306)
T ss_dssp CCSSCCCHHHHHHHHHHHHTTC-SSCEEEEECH
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCCEEEEeCc
Confidence 8886654443 333333211 3578888763
No 87
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=46.16 E-value=10 Score=16.98 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=9.3
Q ss_pred HHHHHHHhhhcC
Q 032027 137 TMGEILSSILMG 148 (148)
Q Consensus 137 ~~~~~l~~~~~~ 148 (148)
.++.++++.|||
T Consensus 4 gleaiirkalmg 15 (26)
T 2gpv_G 4 GLEAIIRKALMG 15 (26)
T ss_pred CHHHHHHHHHcc
Confidence 367788888887
No 88
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=44.19 E-value=85 Score=22.93 Aligned_cols=94 Identities=18% Similarity=0.152 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+.+.|+..... +-.+-+.+ ..++.+....
T Consensus 36 ~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~ 115 (301)
T 1xky_A 36 TKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVA 115 (301)
T ss_dssp HHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 34556677789998888886 588899988887753 333454433221 11122222 2578888888
Q ss_pred CCCCcchHH---HHHHhhhhcCCCCcEEEEEEE
Q 032027 68 MDFNPQIDR---QAEDRCHRIGQTRPVTIYRLV 97 (148)
Q Consensus 68 ~~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~l~ 97 (148)
|.|++.... +....+..-- .-++.+|+.-
T Consensus 116 P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~P 147 (301)
T 1xky_A 116 PYYNKPSQEGMYQHFKAIAEST-PLPVMLYNVP 147 (301)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTC-SSCEEEEECH
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeCc
Confidence 888665443 3333333321 3578888763
No 89
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=43.97 E-value=41 Score=29.66 Aligned_cols=59 Identities=7% Similarity=0.041 Sum_probs=41.8
Q ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcCCCCCCeEEE
Q 032027 6 EWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVI 65 (148)
Q Consensus 6 ~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 65 (148)
...+...++++..++|..+..++...+.....+. +.++++++......+.+.....+|+
T Consensus 673 ~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~-~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 673 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK-IDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC-CSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred HHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC-CCEEEECHHHHhCCccccccceEEE
Confidence 3444445788999999999999888888887654 5677877776666666665554444
No 90
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=43.67 E-value=78 Score=22.99 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|...|+....+.|+ ++.++|.++++...+ .+.+.|+..... +-.+-+.+ ..++.+....
T Consensus 26 ~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~ 105 (292)
T 3daq_A 26 KAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLIT 105 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECC
Confidence 34556677889998888887 477999998887754 334454443211 11111111 1578888888
Q ss_pred CCCCcchHHHHHHhhhhcCC--CCcEEEEEE
Q 032027 68 MDFNPQIDRQAEDRCHRIGQ--TRPVTIYRL 96 (148)
Q Consensus 68 ~~~~~~~~~Q~~gR~~R~Gq--~~~v~v~~l 96 (148)
|.|++.....-..-...+-+ .-++.+|+.
T Consensus 106 P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 136 (292)
T 3daq_A 106 PYYNKTNQRGLVKHFEAIADAVKLPVVLYNV 136 (292)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHCSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEEec
Confidence 88776554432222222221 457888876
No 91
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=42.74 E-value=97 Score=22.67 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCeEEEEeCCC------CHHHHHHHHHHhcC--CCCcceeeeecccc--ccCcCC------CCCCeEEEe
Q 032027 3 DILEWTLDVIGVTYRRLDGST------QVTERQAIVDAFNN--DTSIFACLLSTRAG--GQGLNL------TGADTVVIH 66 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~------~~~~r~~~~~~F~~--~~~~~vll~s~~~~--~~Glnl------~~a~~vi~~ 66 (148)
..+-++|...|+....+.|++ +.+||.++++...+ .+.+.|+... .+. .+-+.+ ..++.+...
T Consensus 39 ~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGv-g~~~t~~ai~la~~a~~~Gadavlv~ 117 (304)
T 3l21_A 39 ARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGA-GTYDTAHSIRLAKACAAEGAHGLLVV 117 (304)
T ss_dssp HHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC-CCSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 345566777899988889874 77999998887754 3344544432 211 111221 257888888
Q ss_pred CCCCCcchHHHHHHhhhhcCC--CCcEEEEEE
Q 032027 67 DMDFNPQIDRQAEDRCHRIGQ--TRPVTIYRL 96 (148)
Q Consensus 67 d~~~~~~~~~Q~~gR~~R~Gq--~~~v~v~~l 96 (148)
.|.|++........-...+-. .-++.+|+.
T Consensus 118 ~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 149 (304)
T 3l21_A 118 TPYYSKPPQRGLQAHFTAVADATELPMLLYDI 149 (304)
T ss_dssp CCCSSCCCHHHHHHHHHHHHTSCSSCEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 888776654433322222222 457888875
No 92
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=42.74 E-value=19 Score=20.89 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=9.0
Q ss_pred HHHHHHHHhcCCeEE
Q 032027 3 DILEWTLDVIGVTYR 17 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~ 17 (148)
+.+...|...|+.+.
T Consensus 15 ~~l~~~l~~~g~~v~ 29 (119)
T 2j48_A 15 TVVCEMLTAAGFKVI 29 (119)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhCCcEEE
Confidence 455666666676544
No 93
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=42.50 E-value=51 Score=24.78 Aligned_cols=94 Identities=13% Similarity=0.008 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcCCCCcceeeeeccc-cccCcCC------CCCCeEEEeCCC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNNDTSIFACLLSTRA-GGQGLNL------TGADTVVIHDMD 69 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~~~~~~vll~s~~~-~~~Glnl------~~a~~vi~~d~~ 69 (148)
..+-++|...|+....+.|+ ++.++|.++++. ...+.+.|+...... -.+-+.+ ..++.+....|.
T Consensus 50 ~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~-~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~ 128 (344)
T 2hmc_A 50 VRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVER-LVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRV 128 (344)
T ss_dssp HHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHH-HHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred HHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHH-HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 34556667789998888886 688999999888 444445544433211 1122222 147788888888
Q ss_pred CCc-chHH---HHHHhhhhcCCCCcEEEEEEE
Q 032027 70 FNP-QIDR---QAEDRCHRIGQTRPVTIYRLV 97 (148)
Q Consensus 70 ~~~-~~~~---Q~~gR~~R~Gq~~~v~v~~l~ 97 (148)
|++ .... +....+..---.-++.+|+.-
T Consensus 129 y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P 160 (344)
T 2hmc_A 129 LSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP 160 (344)
T ss_dssp SSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG
T ss_pred cCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 876 4333 222333320113578888865
No 94
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=41.50 E-value=70 Score=23.25 Aligned_cols=94 Identities=16% Similarity=0.107 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+...|+..... +-.+-+.+ ..++.+....
T Consensus 24 ~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~ 103 (294)
T 2ehh_A 24 GNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVV 103 (294)
T ss_dssp HHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 34556667789998888886 588899988887753 334454433221 11122222 2578888888
Q ss_pred CCCCcchHH---HHHHhhhhcCCCCcEEEEEEE
Q 032027 68 MDFNPQIDR---QAEDRCHRIGQTRPVTIYRLV 97 (148)
Q Consensus 68 ~~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~l~ 97 (148)
|.|++.... +....+..-- .-++.+|+.-
T Consensus 104 P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~P 135 (294)
T 2ehh_A 104 PYYNKPTQRGLYEHFKTVAQEV-DIPIIIYNIP 135 (294)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHC-CSCEEEEECH
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeCC
Confidence 887655443 3333333322 3578888863
No 95
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=41.11 E-value=73 Score=23.30 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+.+.|+..... +-.+-+.+ ..++.+....
T Consensus 35 ~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~ 114 (303)
T 2wkj_A 35 RRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVT 114 (303)
T ss_dssp HHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecC
Confidence 34556677789998888886 588899988887754 334454443221 11122222 2578888888
Q ss_pred CCCCcchHH---HHHHhhhhcCCCCcEEEEEE
Q 032027 68 MDFNPQIDR---QAEDRCHRIGQTRPVTIYRL 96 (148)
Q Consensus 68 ~~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~l 96 (148)
|.|++.... +....+..--..-++.+|+.
T Consensus 115 P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~ 146 (303)
T 2wkj_A 115 PFYYPFSFEEHCDHYRAIIDSADGLPMVVYNI 146 (303)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 888655443 23333332111257888886
No 96
>2ovm_B NCOR, progesterone receptor; nuclear receptor, steroid receptor, CO-repressor, asoprisnil, transcription; HET: AS0; 2.60A {Homo sapiens}
Probab=40.94 E-value=13 Score=16.76 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=10.9
Q ss_pred hhHHHHHHHhhhcC
Q 032027 135 DKTMGEILSSILMG 148 (148)
Q Consensus 135 ~~~~~~~l~~~~~~ 148 (148)
.-.++.++++.|||
T Consensus 10 ~~gleaiirkalmg 23 (26)
T 2ovm_B 10 NLGLEDIIRKALMG 23 (26)
T ss_pred ccCHHHHHHHHHhh
Confidence 34578889999986
No 97
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=40.84 E-value=48 Score=20.02 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=8.0
Q ss_pred HHHHHHHHh-cCCe
Q 032027 3 DILEWTLDV-IGVT 15 (148)
Q Consensus 3 ~~l~~~L~~-~~~~ 15 (148)
+.+...|.. .|+.
T Consensus 22 ~~l~~~L~~~~~~~ 35 (143)
T 3cnb_A 22 DMLTQFLENLFPYA 35 (143)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhccCcc
Confidence 455666666 6666
No 98
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=40.65 E-value=90 Score=22.61 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|++...+.|+ ++.++|.++++...+ ++...|+..... +-.+-+.+ ..++.+....
T Consensus 25 ~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~ 104 (291)
T 3a5f_A 25 SELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVIT 104 (291)
T ss_dssp HHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcC
Confidence 34556677789998888885 688899998887653 333454433221 11111222 2578888888
Q ss_pred CCCCcchHHHHHHhhhhcCC--CCcEEEEEE
Q 032027 68 MDFNPQIDRQAEDRCHRIGQ--TRPVTIYRL 96 (148)
Q Consensus 68 ~~~~~~~~~Q~~gR~~R~Gq--~~~v~v~~l 96 (148)
|.|++.....-..-...+-+ .-++.+|+.
T Consensus 105 P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 135 (291)
T 3a5f_A 105 PYYNKTTQKGLVKHFKAVSDAVSTPIIIYNV 135 (291)
T ss_dssp CCSSCCCHHHHHHHC-CTGGGCCSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 88876554433332222222 256888875
No 99
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=40.58 E-value=76 Score=23.23 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+...|+..... +-.+-+.+ ..++.+....
T Consensus 40 ~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~ 119 (304)
T 3cpr_A 40 REVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVT 119 (304)
T ss_dssp HHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 34556677789998888886 588899988877753 333454443221 11122222 2578888888
Q ss_pred CCCCcchHH---HHHHhhhhcCCCCcEEEEEE
Q 032027 68 MDFNPQIDR---QAEDRCHRIGQTRPVTIYRL 96 (148)
Q Consensus 68 ~~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~l 96 (148)
|.|++.... +....+..-- .-++.+|+.
T Consensus 120 P~y~~~~~~~l~~~f~~ia~a~-~lPiilYn~ 150 (304)
T 3cpr_A 120 PYYSKPSQEGLLAHFGAIAAAT-EVPICLYDI 150 (304)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHC-CSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 888755433 2333333322 357888886
No 100
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=39.31 E-value=31 Score=25.86 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=37.2
Q ss_pred cCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccC---cCCCCCCeEEE
Q 032027 12 IGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQG---LNLTGADTVVI 65 (148)
Q Consensus 12 ~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~G---lnl~~a~~vi~ 65 (148)
.++++..++|+.+..++.........+. +.++++++.....- +++...+.+|+
T Consensus 90 ~~~~v~~~~g~~~~~~~~~~~~~l~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 90 EKVKIFGFYSSMKKEEKEKFEKSFEEDD-YHILVFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp SSCCEEECCTTSCHHHHHHHHHHHHHTC-CSEEEEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred CCceEEEEECCCChhhHHHHHHHhhcCC-CCEEEECHHHHHHHHHHhccccccEEEE
Confidence 6889999999999988887777776553 46788887665222 33445555555
No 101
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=38.93 E-value=1.1e+02 Score=22.25 Aligned_cols=94 Identities=15% Similarity=0.053 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+...|+..... +-.+-+.+ ..++.+....
T Consensus 27 ~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~ 106 (294)
T 3b4u_A 27 IAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAP 106 (294)
T ss_dssp HHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcC
Confidence 34556677789998888886 588899998887764 233454433221 11122222 2577888888
Q ss_pred CCCCc-chHH---HHHHhhhhcCC--CCcEEEEEE
Q 032027 68 MDFNP-QIDR---QAEDRCHRIGQ--TRPVTIYRL 96 (148)
Q Consensus 68 ~~~~~-~~~~---Q~~gR~~R~Gq--~~~v~v~~l 96 (148)
|.|++ .... +....+..--. .-++.+|+.
T Consensus 107 P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~ 141 (294)
T 3b4u_A 107 PSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNI 141 (294)
T ss_dssp CCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred CcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 88876 4333 33333333211 357888886
No 102
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=38.12 E-value=87 Score=22.66 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+...|+..... +-.+-+.+ ..++.+....
T Consensus 24 ~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~ 103 (289)
T 2yxg_A 24 EENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSIT 103 (289)
T ss_dssp HHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 34556677789998888887 588899988887653 333454433221 11122222 2477888888
Q ss_pred CCCCcchHH---HHHHhhhhcCCCCcEEEEEEE
Q 032027 68 MDFNPQIDR---QAEDRCHRIGQTRPVTIYRLV 97 (148)
Q Consensus 68 ~~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~l~ 97 (148)
|.|++.... +....+..-- .-++.+|+.-
T Consensus 104 P~y~~~s~~~l~~~f~~ia~a~-~lPiilYn~P 135 (289)
T 2yxg_A 104 PYYNKPTQEGLRKHFGKVAESI-NLPIVLYNVP 135 (289)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHC-SSCEEEEECH
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeCc
Confidence 887655443 3333333322 3578888863
No 103
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=37.40 E-value=41 Score=24.87 Aligned_cols=93 Identities=15% Similarity=-0.009 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeeccccccCcCC------CCCCeEEEeCC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTRAGGQGLNL------TGADTVVIHDM 68 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~~~~~Glnl------~~a~~vi~~d~ 68 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+.+.|+.....+-.+-+.+ ..|+.+....|
T Consensus 36 ~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~~t~~ai~la~~A~~~Gadavlv~~P 115 (316)
T 3e96_A 36 KETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGYATSTAIELGNAAKAAGADAVMIHMP 115 (316)
T ss_dssp HHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred HHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCcCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 34556677789998888886 488999998887754 33455554432111111211 14777888878
Q ss_pred CCCcchHH---HHHHhhhhcCCCCcEEEEEE
Q 032027 69 DFNPQIDR---QAEDRCHRIGQTRPVTIYRL 96 (148)
Q Consensus 69 ~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~l 96 (148)
.|++.... +....+..-- .-++.+|+.
T Consensus 116 ~y~~~s~~~l~~~f~~va~a~-~lPiilYn~ 145 (316)
T 3e96_A 116 IHPYVTAGGVYAYFRDIIEAL-DFPSLVYFK 145 (316)
T ss_dssp CCSCCCHHHHHHHHHHHHHHH-TSCEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCCEEEEeC
Confidence 77654443 2222322211 267999985
No 104
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=37.27 E-value=43 Score=19.83 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCeEEE
Q 032027 2 LDILEWTLDVIGVTYRR 18 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~ 18 (148)
.+.+...|+..|+.+..
T Consensus 15 ~~~l~~~L~~~g~~v~~ 31 (120)
T 3f6p_A 15 ADILEFNLRKEGYEVHC 31 (120)
T ss_dssp HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhCCEEEEE
Confidence 35677888888887554
No 105
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=34.26 E-value=45 Score=19.94 Aligned_cols=17 Identities=12% Similarity=-0.113 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCeEEE
Q 032027 2 LDILEWTLDVIGVTYRR 18 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~ 18 (148)
.+.+...|...|+.+..
T Consensus 19 ~~~l~~~L~~~g~~v~~ 35 (132)
T 3lte_A 19 AAAIERVLKRDHWQVEI 35 (132)
T ss_dssp HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHCCcEEEE
Confidence 35677888888876543
No 106
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=34.22 E-value=1.2e+02 Score=22.74 Aligned_cols=93 Identities=22% Similarity=0.183 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+.+.|+..... +-.+-+.+ ..|+.+....
T Consensus 55 ~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~ 134 (343)
T 2v9d_A 55 AALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVIN 134 (343)
T ss_dssp HHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 34556677789998888886 588899988887753 333454433221 11122222 2578888888
Q ss_pred CCCCcchHH---HHHHhhhhcCCCCcEEEEEE
Q 032027 68 MDFNPQIDR---QAEDRCHRIGQTRPVTIYRL 96 (148)
Q Consensus 68 ~~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~l 96 (148)
|.|++.... +....+..-- .-++.+|+.
T Consensus 135 P~Y~~~s~~~l~~~f~~VA~a~-~lPiilYn~ 165 (343)
T 2v9d_A 135 PYYWKVSEANLIRYFEQVADSV-TLPVMLYNF 165 (343)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTC-SSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 887655443 3333333311 357888886
No 107
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=33.54 E-value=75 Score=23.66 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ ++.+.|+..... +-.+-+.+ ..++.+....
T Consensus 58 ~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~ 137 (332)
T 2r8w_A 58 SALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAP 137 (332)
T ss_dssp HHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 34556667789998888886 588899998887753 333554443321 11122222 2577888888
Q ss_pred CCCCcchHH---HHHHhhhhcCCCCcEEEEEE
Q 032027 68 MDFNPQIDR---QAEDRCHRIGQTRPVTIYRL 96 (148)
Q Consensus 68 ~~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~l 96 (148)
|.|++.... +....+..-- .-++.+|+.
T Consensus 138 P~Y~~~s~~~l~~~f~~VA~a~-~lPiilYn~ 168 (332)
T 2r8w_A 138 VSYTPLTQEEAYHHFAAVAGAT-ALPLAIYNN 168 (332)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHC-SSCEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 887665443 3333333322 357888875
No 108
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=33.48 E-value=1e+02 Score=22.30 Aligned_cols=92 Identities=12% Similarity=0.010 Sum_probs=54.3
Q ss_pred HHHHHHHHh-cCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecccc--ccCcCC------CCCCeEEE
Q 032027 3 DILEWTLDV-IGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTRAG--GQGLNL------TGADTVVI 65 (148)
Q Consensus 3 ~~l~~~L~~-~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~~~--~~Glnl------~~a~~vi~ 65 (148)
..+-++|-. .|+....+.|+ ++.++|.++++...+ ++.+.|+... .+. .+-+.+ ..++.+..
T Consensus 27 ~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv-g~~~t~~ai~la~~a~~~Gadavlv 105 (293)
T 1f6k_A 27 RQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQV-GSVNLKEAVELGKYATELGYDCLSA 105 (293)
T ss_dssp HHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC-CCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEec-CCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 345566667 89998888886 688899988887753 3344544332 221 112222 25788888
Q ss_pred eCCCCCcchHH---HHHHhhhhcCCCCcEEEEEE
Q 032027 66 HDMDFNPQIDR---QAEDRCHRIGQTRPVTIYRL 96 (148)
Q Consensus 66 ~d~~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~l 96 (148)
..|.|++.... +....+..-- .-++.+|+.
T Consensus 106 ~~P~y~~~~~~~l~~~f~~va~a~-~lPiilYn~ 138 (293)
T 1f6k_A 106 VTPFYYKFSFPEIKHYYDTIIAET-GSNMIVYSI 138 (293)
T ss_dssp ECCCSSCCCHHHHHHHHHHHHHHH-CCCEEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEEC
Confidence 88888655433 2222332211 247888886
No 109
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=33.37 E-value=80 Score=18.99 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCeEE
Q 032027 3 DILEWTLDVIGVTYR 17 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~ 17 (148)
+.+...|...|+.+.
T Consensus 20 ~~l~~~l~~~g~~v~ 34 (140)
T 3grc_A 20 RLLNLMLEKGGFDSD 34 (140)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCeEE
Confidence 456677777777643
No 110
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=32.90 E-value=1.2e+02 Score=22.32 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+.+.|+..... +-.+-+.+ ..|+.+....
T Consensus 46 ~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~ 125 (315)
T 3si9_A 46 CNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVT 125 (315)
T ss_dssp HHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 34556677789998888887 478999998887754 334554443221 11111111 2578888888
Q ss_pred CCCCcchHH---HHHHhhhhcCCCCcEEEEEE
Q 032027 68 MDFNPQIDR---QAEDRCHRIGQTRPVTIYRL 96 (148)
Q Consensus 68 ~~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~l 96 (148)
|.|++.... +....+..-- .-++.+|+.
T Consensus 126 P~y~~~~~~~l~~~f~~va~a~-~lPiilYn~ 156 (315)
T 3si9_A 126 PYYNRPNQRGLYTHFSSIAKAI-SIPIIIYNI 156 (315)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHC-SSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCCEEEEeC
Confidence 887765443 2222332222 467888886
No 111
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=32.89 E-value=83 Score=19.04 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCeEEE
Q 032027 2 LDILEWTLDVIGVTYRR 18 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~ 18 (148)
.+.+...|...|+.+..
T Consensus 18 ~~~l~~~L~~~g~~v~~ 34 (140)
T 3h5i_A 18 AKTIANILNKYGYTVEI 34 (140)
T ss_dssp HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCEEEE
Confidence 35667777777776543
No 112
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=32.79 E-value=95 Score=22.63 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCeEEEEeCCC------CHHHHHHHHHHhcC--CC-Ccceeeeecc-ccccCcCC------CCCCeEEEe
Q 032027 3 DILEWTLDVIGVTYRRLDGST------QVTERQAIVDAFNN--DT-SIFACLLSTR-AGGQGLNL------TGADTVVIH 66 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~------~~~~r~~~~~~F~~--~~-~~~vll~s~~-~~~~Glnl------~~a~~vi~~ 66 (148)
..+-++|-..|+....+.|++ +.++|.++++...+ ++ ...|+..... +-.+-+.+ ..++.+...
T Consensus 31 ~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 110 (301)
T 3m5v_A 31 ARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSV 110 (301)
T ss_dssp HHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 345566777899988888874 77899998887754 23 4554443221 11111111 257888888
Q ss_pred CCCCCcchHHH---HHHhhhhcCCCCcEEEEEE
Q 032027 67 DMDFNPQIDRQ---AEDRCHRIGQTRPVTIYRL 96 (148)
Q Consensus 67 d~~~~~~~~~Q---~~gR~~R~Gq~~~v~v~~l 96 (148)
.|.|++..... ....+..-- .-++.+|+.
T Consensus 111 ~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~ 142 (301)
T 3m5v_A 111 APYYNKPTQQGLYEHYKAIAQSV-DIPVLLYNV 142 (301)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHC-SSCEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEeC
Confidence 88877654432 333333222 467888876
No 113
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=32.72 E-value=35 Score=20.44 Aligned_cols=74 Identities=11% Similarity=0.029 Sum_probs=34.0
Q ss_pred CeEEEEeCCCCHHHHHHHHHHhcC-CCCcceeeeeccccc-----cCc-CCCCCCeEEEeCCCCCcchHHHHHHhhhhcC
Q 032027 14 VTYRRLDGSTQVTERQAIVDAFNN-DTSIFACLLSTRAGG-----QGL-NLTGADTVVIHDMDFNPQIDRQAEDRCHRIG 86 (148)
Q Consensus 14 ~~~~~~~G~~~~~~r~~~~~~F~~-~~~~~vll~s~~~~~-----~Gl-nl~~a~~vi~~d~~~~~~~~~Q~~gR~~R~G 86 (148)
+..+.++-.++...-...+...+. .+...+++++..... ..+ ....+...-++.-|+++....+++.++...+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 455555555554444444444432 233455555533221 100 0122223334556677777777776666544
Q ss_pred C
Q 032027 87 Q 87 (148)
Q Consensus 87 q 87 (148)
+
T Consensus 127 ~ 127 (135)
T 3eqz_A 127 A 127 (135)
T ss_dssp -
T ss_pred c
Confidence 3
No 114
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=32.54 E-value=1.5e+02 Score=21.78 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCC-CeEEEe
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGA-DTVVIH 66 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a-~~vi~~ 66 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+...|+..... +-.+-+.+ ..+ +.+...
T Consensus 31 ~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~ 110 (311)
T 3h5d_A 31 PALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAI 110 (311)
T ss_dssp HHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEE
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEc
Confidence 44566777889998888887 578999998887754 333454443221 11111111 134 888888
Q ss_pred CCCCCcchHHHHHHhhhhcC--CCCcEEEEEE
Q 032027 67 DMDFNPQIDRQAEDRCHRIG--QTRPVTIYRL 96 (148)
Q Consensus 67 d~~~~~~~~~Q~~gR~~R~G--q~~~v~v~~l 96 (148)
.|.|++........-...+- -.-++.+|+.
T Consensus 111 ~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 142 (311)
T 3h5d_A 111 VPYYNKPSQEGMYQHFKAIADASDLPIIIYNI 142 (311)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCSSCEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCEEEEec
Confidence 88887655443322222222 1457888876
No 115
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=31.57 E-value=89 Score=18.98 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=9.9
Q ss_pred HHHHHHHHhcC-CeEEE
Q 032027 3 DILEWTLDVIG-VTYRR 18 (148)
Q Consensus 3 ~~l~~~L~~~~-~~~~~ 18 (148)
+.|...|...| +.+..
T Consensus 34 ~~l~~~L~~~g~~~v~~ 50 (146)
T 4dad_A 34 AHLARLVGDAGRYRVTR 50 (146)
T ss_dssp HHHHHHHHHHCSCEEEE
T ss_pred HHHHHHHhhCCCeEEEE
Confidence 45666777766 66544
No 116
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=31.50 E-value=80 Score=23.27 Aligned_cols=92 Identities=15% Similarity=0.028 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeeccccc--cCcCC------CCCCeEEEe
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTRAGG--QGLNL------TGADTVVIH 66 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~~~~--~Glnl------~~a~~vi~~ 66 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+.+.|+... .+.+ +-+.+ ..|+.+...
T Consensus 48 ~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGv-g~~~t~~ai~la~~A~~~Gadavlv~ 126 (315)
T 3na8_A 48 GRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSV-SDLTTAKTVRRAQFAESLGAEAVMVL 126 (315)
T ss_dssp HHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEEC-CCSSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEec-CCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 34556677789998888886 478999998887754 3334544432 2111 11111 257888888
Q ss_pred CCCCCcchHHH---HHHhhhhcCCCCcEEEEEE
Q 032027 67 DMDFNPQIDRQ---AEDRCHRIGQTRPVTIYRL 96 (148)
Q Consensus 67 d~~~~~~~~~Q---~~gR~~R~Gq~~~v~v~~l 96 (148)
.|.|++..... ....+..-- .-++.+|+.
T Consensus 127 ~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~ 158 (315)
T 3na8_A 127 PISYWKLNEAEVFQHYRAVGEAI-GVPVMLYNN 158 (315)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHC-SSCEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeC
Confidence 88877654443 233332222 357888885
No 117
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=31.32 E-value=84 Score=22.91 Aligned_cols=94 Identities=15% Similarity=0.052 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+.+.|+..... +-.+-+.+ ..++.+....
T Consensus 24 ~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~ 103 (297)
T 2rfg_A 24 AGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVA 103 (297)
T ss_dssp HHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 34556677789998888885 688999998887753 333454433221 11122222 2477888888
Q ss_pred CCCCcchHH---HHHHhhhhcCCCCcEEEEEEE
Q 032027 68 MDFNPQIDR---QAEDRCHRIGQTRPVTIYRLV 97 (148)
Q Consensus 68 ~~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~l~ 97 (148)
|.|++.... +....+..-- .-++.+|+.-
T Consensus 104 P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~P 135 (297)
T 2rfg_A 104 GYYNRPSQEGLYQHFKMVHDAI-DIPIIVYNIP 135 (297)
T ss_dssp CTTTCCCHHHHHHHHHHHHHHC-SSCEEEEECH
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeCc
Confidence 887655443 3333333322 3578888863
No 118
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=31.25 E-value=78 Score=18.20 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcC-CCCcceeeee
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNN-DTSIFACLLS 47 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~-~~~~~vll~s 47 (148)
......|+..|++|..++=...++.++...+.... ...++++++.
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~ 67 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNG 67 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEET
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEEC
Confidence 45678899999999999888887777766666542 2245555554
No 119
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=30.28 E-value=92 Score=18.71 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=6.6
Q ss_pred HHHHHHHHhcCCe
Q 032027 3 DILEWTLDVIGVT 15 (148)
Q Consensus 3 ~~l~~~L~~~~~~ 15 (148)
+.+...|+..|+.
T Consensus 21 ~~l~~~L~~~g~~ 33 (142)
T 3cg4_A 21 IAVKTILSDAGFH 33 (142)
T ss_dssp HHHHHHHHHTTCE
T ss_pred HHHHHHHHHCCeE
Confidence 3445555555554
No 120
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=29.85 E-value=85 Score=21.06 Aligned_cols=75 Identities=7% Similarity=-0.045 Sum_probs=41.9
Q ss_pred cCCeEEEEeCCCCHHHHHHHHHHhcC--CCCcceeeeecccccc-CcCCCCCCeEEEeCCCCCcchHHHHHHhhhhcC
Q 032027 12 IGVTYRRLDGSTQVTERQAIVDAFNN--DTSIFACLLSTRAGGQ-GLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIG 86 (148)
Q Consensus 12 ~~~~~~~~~G~~~~~~r~~~~~~F~~--~~~~~vll~s~~~~~~-Glnl~~a~~vi~~d~~~~~~~~~Q~~gR~~R~G 86 (148)
..+..+.++-.++...-...+...+. .+..++++++...... -.....+...-++.-|+++....+++.++.+-+
T Consensus 53 ~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 53 RSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp GGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCC
Confidence 34556666655555444455555543 4556777776443211 111122233344567888988888888887744
No 121
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=29.74 E-value=1.3e+02 Score=20.44 Aligned_cols=57 Identities=9% Similarity=0.035 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccc-----cCcCCCCCCeEEE
Q 032027 4 ILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGG-----QGLNLTGADTVVI 65 (148)
Q Consensus 4 ~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~-----~Glnl~~a~~vi~ 65 (148)
.+..++...++.+..++|+.+.......+.. .+.++++++.... ..+++.....+|+
T Consensus 121 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 121 VAAEYCRACRLKSTCIYGGAPKGPQIRDLER-----GVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHH-----CCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred HHHHHHhhcCceEEEEECCCChHHHHHHhcC-----CCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 4555666678999999999887666554432 2456777765432 2345666666655
No 122
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=29.74 E-value=65 Score=19.61 Aligned_cols=44 Identities=7% Similarity=-0.020 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccc
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRA 50 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~ 50 (148)
.+.+...|...|+.+....-. +.. ++++..... .+.++++....
T Consensus 18 ~~~l~~~L~~~~~~~~v~~~~-~~~---~a~~~l~~~-~~dlii~D~~l 61 (144)
T 3kht_A 18 IALIRRVLDRKDIHCQLEFVD-NGA---KALYQVQQA-KYDLIILDIGL 61 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEES-SHH---HHHHHHTTC-CCSEEEECTTC
T ss_pred HHHHHHHHHhcCCCeeEEEEC-CHH---HHHHHhhcC-CCCEEEEeCCC
Confidence 356788888888874333222 222 233333332 24556665443
No 123
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=29.64 E-value=1.7e+02 Score=21.51 Aligned_cols=93 Identities=15% Similarity=0.092 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|+....+.|+ ++.+||.++++...+ ++.+.|+..... +-.+-+.+ ..++.+....
T Consensus 47 ~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~ 126 (314)
T 3qze_A 47 AKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVT 126 (314)
T ss_dssp HHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 34556667789998888886 588999998887753 333454443221 11111211 2578888888
Q ss_pred CCCCcchHH---HHHHhhhhcCCCCcEEEEEE
Q 032027 68 MDFNPQIDR---QAEDRCHRIGQTRPVTIYRL 96 (148)
Q Consensus 68 ~~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~l 96 (148)
|.|++.... +....+..-- .-++.+|+.
T Consensus 127 P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~ 157 (314)
T 3qze_A 127 PYYNKPTQEGMYQHFRHIAEAV-AIPQILYNV 157 (314)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHS-CSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 877765443 2233332222 467888886
No 124
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=29.42 E-value=65 Score=18.77 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCCeEE
Q 032027 3 DILEWTLDVIGVTYR 17 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~ 17 (148)
+.+...|+..|+.+.
T Consensus 19 ~~l~~~L~~~g~~v~ 33 (127)
T 2gkg_A 19 ATLRSALEGRGFTVD 33 (127)
T ss_dssp HHHHHHHHHHTCEEE
T ss_pred HHHHHHHHhcCceEE
Confidence 466777877787754
No 125
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=29.36 E-value=96 Score=18.65 Aligned_cols=9 Identities=33% Similarity=0.065 Sum_probs=3.9
Q ss_pred HHHHHHHhc
Q 032027 4 ILEWTLDVI 12 (148)
Q Consensus 4 ~l~~~L~~~ 12 (148)
.+...|...
T Consensus 18 ~l~~~l~~~ 26 (140)
T 3n53_A 18 ELKNFLDSE 26 (140)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHhc
Confidence 344444443
No 126
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=28.96 E-value=70 Score=23.58 Aligned_cols=92 Identities=17% Similarity=0.097 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeeccccccCcCC------CCCCeEEEeCC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTRAGGQGLNL------TGADTVVIHDM 68 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~~~~~Glnl------~~a~~vi~~d~ 68 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+.+.|+.....+-.+-+.+ ..|+.+....|
T Consensus 36 ~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~st~~ai~la~~A~~~Gadavlv~~P 115 (314)
T 3d0c_A 36 DDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGYSVDTAIELGKSAIDSGADCVMIHQP 115 (314)
T ss_dssp HHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 34556677789998888885 688999998877753 33455444332211122222 25788888888
Q ss_pred CCCcchHH---HHHHhhhhcCCCCcEEEEE
Q 032027 69 DFNPQIDR---QAEDRCHRIGQTRPVTIYR 95 (148)
Q Consensus 69 ~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~ 95 (148)
.|++.... +....+..-- .-++.+|+
T Consensus 116 ~y~~~s~~~l~~~f~~va~a~-~lPiilYn 144 (314)
T 3d0c_A 116 VHPYITDAGAVEYYRNIIEAL-DAPSIIYF 144 (314)
T ss_dssp CCSCCCHHHHHHHHHHHHHHS-SSCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCCEEEEe
Confidence 77655433 3333333322 36799999
No 127
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=28.86 E-value=58 Score=19.07 Aligned_cols=15 Identities=20% Similarity=0.053 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCeEE
Q 032027 3 DILEWTLDVIGVTYR 17 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~ 17 (148)
+.+...|...|+.+.
T Consensus 16 ~~l~~~L~~~~~~v~ 30 (122)
T 1zgz_A 16 ARLQSYFTQEGYTVS 30 (122)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCeEE
Confidence 467778887887754
No 128
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=28.47 E-value=1.7e+02 Score=21.21 Aligned_cols=93 Identities=17% Similarity=0.080 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCeEEEEeCCC------CHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGST------QVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~------~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|++...+.|++ +.++|.+.++...+ .+.+.|+..... +-.+-+.+ ..++.+....
T Consensus 31 ~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~ 110 (297)
T 3flu_A 31 RDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVV 110 (297)
T ss_dssp HHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECC
Confidence 345566777899988898874 78999998887754 334554443221 11111111 2578888888
Q ss_pred CCCCcchHHH---HHHhhhhcCCCCcEEEEEE
Q 032027 68 MDFNPQIDRQ---AEDRCHRIGQTRPVTIYRL 96 (148)
Q Consensus 68 ~~~~~~~~~Q---~~gR~~R~Gq~~~v~v~~l 96 (148)
|.|++..... ....+..-- .-++.+|+.
T Consensus 111 P~y~~~~~~~l~~~f~~va~a~-~lPiilYn~ 141 (297)
T 3flu_A 111 PYYNKPSQEGIYQHFKTIAEAT-SIPMIIYNV 141 (297)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHC-CSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCCEEEEEC
Confidence 8877654432 233332222 467888876
No 129
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=27.98 E-value=1.7e+02 Score=21.10 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ .+...|+..... +-.+-+.+ ..++.+....
T Consensus 25 ~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~ 104 (292)
T 2ojp_A 25 KKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVT 104 (292)
T ss_dssp HHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECC
Confidence 34556666789998888886 588899988887753 333454433221 11111211 3578888888
Q ss_pred CCCCcchHHH---HHHhhhhcCCCCcEEEEEE
Q 032027 68 MDFNPQIDRQ---AEDRCHRIGQTRPVTIYRL 96 (148)
Q Consensus 68 ~~~~~~~~~Q---~~gR~~R~Gq~~~v~v~~l 96 (148)
|.|++..... ....+..-- .-++.+|+.
T Consensus 105 P~y~~~s~~~l~~~f~~ia~a~-~lPiilYn~ 135 (292)
T 2ojp_A 105 PYYNRPSQEGLYQHFKAIAEHT-DLPQILYNV 135 (292)
T ss_dssp CCSSCCCHHHHHHHHHHHHTTC-SSCEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 8886554443 333333211 257888875
No 130
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=27.12 E-value=43 Score=20.90 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=30.3
Q ss_pred HHhcCCeEEEE--eCCCCHHHHHHHHHHhcCCCCcceeeeeccc
Q 032027 9 LDVIGVTYRRL--DGSTQVTERQAIVDAFNNDTSIFACLLSTRA 50 (148)
Q Consensus 9 L~~~~~~~~~~--~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~ 50 (148)
++..|+..+.. ..+++.++-.+.+++|.+++++-+++++-..
T Consensus 15 FrLaGi~~~~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte~i 58 (111)
T 2qai_A 15 FRLAGVHEAYEYDESLESVERARNKLRELLERDDVGIILITERL 58 (111)
T ss_dssp HHHHTCSEEEECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEHHH
T ss_pred HHHcCCceEEEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcHHH
Confidence 45678887666 3335667788888888888788888888554
No 131
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=27.00 E-value=95 Score=22.50 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCeEEEEeCC------CCHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGS------TQVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~------~~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|+....+.|+ ++.++|.++++...+ ++...|+..... +-.+-+.+ ..++.+....
T Consensus 24 ~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~ 103 (292)
T 2vc6_A 24 HDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVS 103 (292)
T ss_dssp HHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence 34556667789998888885 688999998887753 233454433221 11122222 2578888888
Q ss_pred CCCCcchHH---HHHHhhhhcCCCCcEEEEEEE
Q 032027 68 MDFNPQIDR---QAEDRCHRIGQTRPVTIYRLV 97 (148)
Q Consensus 68 ~~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~l~ 97 (148)
|.|++.... +....+...- .-++.+|+.-
T Consensus 104 P~y~~~s~~~l~~~f~~ia~a~-~lPiilYn~P 135 (292)
T 2vc6_A 104 PYYNKPTQEGIYQHFKAIDAAS-TIPIIVYNIP 135 (292)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHC-SSCEEEEECH
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCCEEEEeCc
Confidence 887655443 3333443322 3578888863
No 132
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=26.65 E-value=1.2e+02 Score=22.96 Aligned_cols=52 Identities=17% Similarity=0.061 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCeEEEEeC--------CCCHHHHHHHHHHhcCCCCcceeeeeccccccCcC
Q 032027 3 DILEWTLDVIGVTYRRLDG--------STQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLN 56 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G--------~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gln 56 (148)
+...+.|+..|+.+..... +-++++|.+-+.++-.+++++.+++. .||.|.+
T Consensus 64 ~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~--rGGyga~ 123 (371)
T 3tla_A 64 FRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMST--IGGDNSN 123 (371)
T ss_dssp HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEES--CCCSCGG
T ss_pred HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc--cccccHH
Confidence 3445678888998754321 34778888888887788888766654 3566655
No 133
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=25.62 E-value=82 Score=18.97 Aligned_cols=12 Identities=0% Similarity=-0.241 Sum_probs=7.0
Q ss_pred HHHHHHHHhcCC
Q 032027 3 DILEWTLDVIGV 14 (148)
Q Consensus 3 ~~l~~~L~~~~~ 14 (148)
..+...|...|.
T Consensus 23 ~~l~~~l~~~~~ 34 (146)
T 3ilh_A 23 FLNTTIIRMTHR 34 (146)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHhcCC
Confidence 345566666665
No 134
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=25.51 E-value=1.2e+02 Score=23.94 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=29.0
Q ss_pred HHHHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 032027 77 QAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKR 112 (148)
Q Consensus 77 Q~~gR~~R~Gq~~~v~v~~l~~~~t~ee~i~~~~~~ 112 (148)
+|...+.+.|......+|..++.|.+++.+.+...-
T Consensus 137 ~Re~~~~~~g~~~~p~iy~ivAtG~i~eDi~qa~aA 172 (516)
T 1xrs_A 137 IRESRFEEYGDKSGPLLYVIVATGNIYEDITQAVAA 172 (516)
T ss_dssp HHHHHHHHHCCCSSCEEEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEEecCchHHHHHHHHHH
Confidence 445556788988889999999999999998876544
No 135
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=25.41 E-value=1.9e+02 Score=20.81 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCeEEEEeCCC------CHHHHHHHHHHhcC--CCCcceeeeecc-ccccCcCC------CCCCeEEEeC
Q 032027 3 DILEWTLDVIGVTYRRLDGST------QVTERQAIVDAFNN--DTSIFACLLSTR-AGGQGLNL------TGADTVVIHD 67 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~------~~~~r~~~~~~F~~--~~~~~vll~s~~-~~~~Glnl------~~a~~vi~~d 67 (148)
..+-++|-..|++...+.|++ +.++|.+.++...+ ++...|+..... +-.+-+.+ ..++.+....
T Consensus 25 ~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~ 104 (291)
T 3tak_A 25 EKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVT 104 (291)
T ss_dssp HHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 345566677899988888875 67999998887754 333454443221 11111111 2478888888
Q ss_pred CCCCcchHH---HHHHhhhhcCCCCcEEEEEE
Q 032027 68 MDFNPQIDR---QAEDRCHRIGQTRPVTIYRL 96 (148)
Q Consensus 68 ~~~~~~~~~---Q~~gR~~R~Gq~~~v~v~~l 96 (148)
|.|++.... +....+..-- .-++.+|+.
T Consensus 105 P~y~~~~~~~l~~~f~~ia~a~-~lPiilYn~ 135 (291)
T 3tak_A 105 PYYNKPTQEGLYQHYKAIAEAV-ELPLILYNV 135 (291)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHC-CSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCEEEEec
Confidence 887755443 2333333222 457888876
No 136
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=25.31 E-value=1.6e+02 Score=19.79 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcC
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNN 37 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~ 37 (148)
+.|...|+..|+.+. ++-..+..+-.+.+.+|..
T Consensus 68 ~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 68 TGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp HHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 568889999999965 4566788899999999954
No 137
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=24.71 E-value=50 Score=19.66 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCeEEE
Q 032027 2 LDILEWTLDVIGVTYRR 18 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~ 18 (148)
.+.+...|+..|+.+..
T Consensus 15 ~~~l~~~l~~~g~~v~~ 31 (122)
T 3gl9_A 15 RKIVSFNLKKEGYEVIE 31 (122)
T ss_dssp HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHCCcEEEE
Confidence 35677888888887653
No 138
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=24.45 E-value=1.2e+02 Score=18.21 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=9.2
Q ss_pred HHHHHHHHhc-CCeEE
Q 032027 3 DILEWTLDVI-GVTYR 17 (148)
Q Consensus 3 ~~l~~~L~~~-~~~~~ 17 (148)
+.+...|... ++..+
T Consensus 23 ~~l~~~L~~~~~~~~v 38 (143)
T 2qv0_A 23 QELSWLINTHSQMEIV 38 (143)
T ss_dssp HHHHHHHHHHSCCEEE
T ss_pred HHHHHHHHhCCCceEE
Confidence 4566777765 55543
No 139
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=23.65 E-value=1e+02 Score=18.16 Aligned_cols=13 Identities=8% Similarity=0.151 Sum_probs=6.8
Q ss_pred HHHHHHHHhc-CCe
Q 032027 3 DILEWTLDVI-GVT 15 (148)
Q Consensus 3 ~~l~~~L~~~-~~~ 15 (148)
+.+...|... |+.
T Consensus 16 ~~l~~~l~~~~~~~ 29 (130)
T 1dz3_A 16 SLLDEYISSQPDME 29 (130)
T ss_dssp HHHHHHHHTSTTEE
T ss_pred HHHHHHHHhCCCce
Confidence 3455566554 444
No 140
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=22.42 E-value=1.3e+02 Score=17.93 Aligned_cols=12 Identities=17% Similarity=0.197 Sum_probs=8.5
Q ss_pred HHHHHHHHhcCC
Q 032027 3 DILEWTLDVIGV 14 (148)
Q Consensus 3 ~~l~~~L~~~~~ 14 (148)
+.+...|...|+
T Consensus 21 ~~l~~~L~~~g~ 32 (143)
T 2qvg_A 21 QSVERVFHKISS 32 (143)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 456777777776
No 141
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=22.38 E-value=1.1e+02 Score=17.90 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=28.4
Q ss_pred eCCCCHHHHHHHHHHhcCCCC-cceeeeeccccccCcCCCCCCeE
Q 032027 20 DGSTQVTERQAIVDAFNNDTS-IFACLLSTRAGGQGLNLTGADTV 63 (148)
Q Consensus 20 ~G~~~~~~r~~~~~~F~~~~~-~~vll~s~~~~~~Glnl~~a~~v 63 (148)
|--++.++.++.+++++-... .. -+..++..+.-+.+...+.+
T Consensus 12 H~iLs~eEk~~lL~~y~i~~~qLP-rI~~~DPvar~~G~k~GdVv 55 (78)
T 1hmj_A 12 HEIVPKEEVEEILKRYNIKIQQLP-KIYEDDPVIQEIGAKEGDVV 55 (78)
T ss_pred eEECCHHHHHHHHHHcCCCHHHCC-eeeCcCHhhHHhCCCCCCEE
Confidence 344688999999999985432 33 24445666677776666655
No 142
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.21 E-value=1.4e+02 Score=17.95 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHh
Q 032027 4 ILEWTLDVIGVTYRRLDGSTQVTERQAIVDAF 35 (148)
Q Consensus 4 ~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F 35 (148)
.+...|+..+++|..++=...++.++...+.+
T Consensus 29 ~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 29 DVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp HHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 57888999999999998888877777766665
No 143
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=22.19 E-value=1e+02 Score=26.83 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=38.4
Q ss_pred HHHHHHHhcCC----eEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeeccccccCcC-CCCCCeEEE
Q 032027 4 ILEWTLDVIGV----TYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLN-LTGADTVVI 65 (148)
Q Consensus 4 ~l~~~L~~~~~----~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gln-l~~a~~vi~ 65 (148)
.+..++...++ .+..++|+.+..++.+..+.+.+ +.|+++++...-.-+. |...+.+|+
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~---~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN---FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG---CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC---CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 34455555677 88999999998887777777765 5678887765433332 444444444
No 144
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=22.18 E-value=1e+02 Score=18.56 Aligned_cols=15 Identities=7% Similarity=-0.022 Sum_probs=8.2
Q ss_pred HHHHHHHHh-cCCeEE
Q 032027 3 DILEWTLDV-IGVTYR 17 (148)
Q Consensus 3 ~~l~~~L~~-~~~~~~ 17 (148)
+.|...|.. .|+.+.
T Consensus 18 ~~l~~~L~~~~~~~v~ 33 (140)
T 3lua_A 18 EKTKIIFDNIGEYDFI 33 (140)
T ss_dssp HHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHhccCccEE
Confidence 345556665 565544
No 145
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=22.10 E-value=1.3e+02 Score=21.03 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=12.3
Q ss_pred HHHHhcCCeEEEEeCCCCHHHHHHHHHH
Q 032027 7 WTLDVIGVTYRRLDGSTQVTERQAIVDA 34 (148)
Q Consensus 7 ~~L~~~~~~~~~~~G~~~~~~r~~~~~~ 34 (148)
+.|++.|+++....+....+.-.+.+.+
T Consensus 154 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 181 (297)
T 3rot_A 154 TILQDKGIFFEELDVGTDPNQVQSRVKS 181 (297)
T ss_dssp HHHHHTTCEEEEEECCSCHHHHHHHHHH
T ss_pred HHHHhcCCeEEEeecCCChHHHHHHHHH
Confidence 4444455555544444343333333333
No 146
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=21.93 E-value=2e+02 Score=19.78 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=32.0
Q ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCCCcceeeeecccc------ccCcCCCCCCeEEE
Q 032027 6 EWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAG------GQGLNLTGADTVVI 65 (148)
Q Consensus 6 ~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~~~~vll~s~~~~------~~Glnl~~a~~vi~ 65 (148)
..+....++.+..++|+.+..+....+. . .+.++++++... ..++++...+.+|+
T Consensus 132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~--~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 132 EALGSSIGVQSAVIVGGIDSMSQSLALA---K--KPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp HHHHGGGTCCEEEECTTSCHHHHHHHHH---T--CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred HHHhccCCeeEEEEECCCChHHHHHHhc---C--CCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 3444445888889999887655443332 2 345677776543 13455666666655
No 147
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=21.80 E-value=2.4e+02 Score=20.73 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcC
Q 032027 3 DILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNN 37 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~ 37 (148)
+.|...|+..|+.+ .++...+..+-.+.+.+|..
T Consensus 87 ~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 87 KSLIHLFQELNFTI-FPYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp HHHHHHHHHTTEEE-EEECSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEE-EEccCCCHHHHHHHHHHHHH
Confidence 56889999999995 56778899999999999964
No 148
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}
Probab=21.74 E-value=1.5e+02 Score=21.19 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=12.7
Q ss_pred cCcCCCC-CCeEEEeCCCCC
Q 032027 53 QGLNLTG-ADTVVIHDMDFN 71 (148)
Q Consensus 53 ~Glnl~~-a~~vi~~d~~~~ 71 (148)
.|++... .+.+|-|+|.|-
T Consensus 151 ~~~~~~~~~~vvIAYEPvWA 170 (250)
T 1yya_A 151 EGVEPPGPEALVIAYEPVWA 170 (250)
T ss_dssp TTCCCSSGGGCEEEECCGGG
T ss_pred hcCCHHHcCcEEEEECCHHH
Confidence 3454432 567888999993
No 149
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=21.42 E-value=1e+02 Score=18.48 Aligned_cols=15 Identities=13% Similarity=0.005 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCCeEE
Q 032027 3 DILEWTLDVIGVTYR 17 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~ 17 (148)
+.+...|...|+.+.
T Consensus 18 ~~l~~~L~~~g~~v~ 32 (142)
T 2qxy_A 18 LAVKNALEKDGFNVI 32 (142)
T ss_dssp HHHHHHHGGGTCEEE
T ss_pred HHHHHHHHhCCCEEE
Confidence 456777777777654
No 150
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=21.37 E-value=1.5e+02 Score=22.03 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCeEEEEeC--------CCCHHHHHHHHHHhcCCCCcceeeeeccccccCcC
Q 032027 3 DILEWTLDVIGVTYRRLDG--------STQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLN 56 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~G--------~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gln 56 (148)
+...+.|+..|+.+..-.. +-+.++|.+-+.++-.+++++.+++. .||.|.+
T Consensus 33 ~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~--rGG~g~~ 92 (331)
T 4e5s_A 33 RLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTT--LGGYNSN 92 (331)
T ss_dssp HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES--CCCSCGG
T ss_pred HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc--cccccHH
Confidence 4455678888998764321 24678888888777777777766644 3455544
No 151
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=20.87 E-value=91 Score=18.92 Aligned_cols=16 Identities=19% Similarity=-0.012 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCCeEE
Q 032027 2 LDILEWTLDVIGVTYR 17 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~ 17 (148)
.+.+...|...|+.+.
T Consensus 21 ~~~l~~~L~~~g~~v~ 36 (147)
T 2zay_A 21 LAASISALSQEGFDII 36 (147)
T ss_dssp GHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHcCCeEE
Confidence 3567777877777654
No 152
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=20.67 E-value=2.1e+02 Score=19.56 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcCCC
Q 032027 2 LDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDT 39 (148)
Q Consensus 2 l~~l~~~L~~~~~~~~~~~G~~~~~~r~~~~~~F~~~~ 39 (148)
+.-+++.+++.|+.+..+....+.+.-.+.++.+....
T Consensus 26 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~ 63 (276)
T 3jy6_A 26 FKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRG 63 (276)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCC
Confidence 45677888889999888887777666666777776543
No 153
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=20.43 E-value=93 Score=18.00 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCCeEE
Q 032027 3 DILEWTLDVIGVTYR 17 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~ 17 (148)
+.+...|+..|+.++
T Consensus 16 ~~l~~~l~~~g~~vv 30 (120)
T 1tmy_A 16 MMLKDIITKAGYEVA 30 (120)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHhhcCcEEE
Confidence 456777887787744
No 154
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=20.42 E-value=1.5e+02 Score=21.97 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCeEEEEe------C--CCCHHHHHHHHHHhcCCCCcceeeeeccccccCcC
Q 032027 3 DILEWTLDVIGVTYRRLD------G--STQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLN 56 (148)
Q Consensus 3 ~~l~~~L~~~~~~~~~~~------G--~~~~~~r~~~~~~F~~~~~~~vll~s~~~~~~Gln 56 (148)
+...+.|+..|+.+..-. + +-++++|.+-+.++-.+++++.+++. .||.|.+
T Consensus 34 ~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~--rGG~g~~ 93 (336)
T 3sr3_A 34 ERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMST--IGGMNSN 93 (336)
T ss_dssp HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEES--CCCSCGG
T ss_pred HHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEc--cccccHH
Confidence 344567888899876421 1 34678888888777777777766644 3556554
No 155
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=20.39 E-value=88 Score=18.39 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=8.7
Q ss_pred HHHHHHHHhcCCe
Q 032027 3 DILEWTLDVIGVT 15 (148)
Q Consensus 3 ~~l~~~L~~~~~~ 15 (148)
+.+...|+..|+.
T Consensus 18 ~~l~~~l~~~~~~ 30 (128)
T 1jbe_A 18 RIVRNLLKELGFN 30 (128)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCc
Confidence 4567777777763
Done!