Query 032028
Match_columns 148
No_of_seqs 105 out of 134
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 08:37:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02893 GRAM: GRAM domain; I 99.6 3.1E-15 6.6E-20 100.1 4.8 66 19-94 2-67 (69)
2 smart00568 GRAM domain in gluc 99.4 1.7E-13 3.8E-18 89.6 5.8 58 26-95 2-60 (61)
3 KOG1032 Uncharacterized conser 97.7 7E-05 1.5E-09 69.7 6.0 105 26-144 117-221 (590)
4 PF14470 bPH_3: Bacterial PH d 97.3 0.0053 1.1E-07 42.1 10.0 94 27-136 2-95 (96)
5 KOG4347 GTPase-activating prot 96.1 0.0065 1.4E-07 57.9 4.1 100 22-136 14-115 (671)
6 PF14844 PH_BEACH: PH domain a 95.5 0.036 7.8E-07 39.6 5.2 86 31-118 1-90 (106)
7 PF00169 PH: PH domain; Inter 89.7 2.8 6E-05 27.2 7.0 64 56-120 19-86 (104)
8 PF07289 DUF1448: Protein of u 85.7 2.5 5.4E-05 37.9 6.3 85 23-123 148-234 (339)
9 smart00683 DM16 Repeats in sea 85.6 1.6 3.6E-05 29.6 4.0 39 42-93 15-53 (55)
10 smart00233 PH Pleckstrin homol 82.7 8.3 0.00018 24.2 6.3 43 78-121 42-85 (102)
11 PF08567 TFIIH_BTF_p62_N: TFII 80.1 7.8 0.00017 27.4 5.9 54 47-113 12-67 (79)
12 PF11605 Vps36_ESCRT-II: Vacuo 80.0 2.1 4.6E-05 31.0 3.1 48 46-104 35-82 (89)
13 KOG4471 Phosphatidylinositol 3 77.2 12 0.00025 36.6 7.7 96 20-129 30-126 (717)
14 cd01201 Neurobeachin Neurobeac 73.8 9.2 0.0002 29.2 5.1 85 30-118 1-90 (108)
15 KOG3473 RNA polymerase II tran 73.2 1.9 4.2E-05 33.2 1.3 22 97-118 10-31 (112)
16 cd01244 PH_RasGAP_CG9209 RAS_G 67.4 14 0.00031 26.9 4.8 35 79-113 42-76 (98)
17 PF07719 TPR_2: Tetratricopept 64.1 8 0.00017 21.1 2.3 18 123-140 16-33 (34)
18 cd00900 PH-like Pleckstrin hom 63.1 27 0.00058 21.8 5.0 65 45-121 18-84 (99)
19 PF01845 CcdB: CcdB protein; 61.7 11 0.00024 28.0 3.4 35 79-119 30-65 (102)
20 PF03931 Skp1_POZ: Skp1 family 60.0 6 0.00013 26.1 1.5 14 104-117 1-14 (62)
21 cd01239 PH_PKD Protein kinase 59.7 26 0.00057 27.2 5.2 39 79-120 39-80 (117)
22 PF00017 SH2: SH2 domain; Int 58.4 5.6 0.00012 26.3 1.1 17 117-133 1-17 (77)
23 cd00821 PH Pleckstrin homology 57.9 42 0.00092 20.7 5.6 59 51-119 21-79 (96)
24 PF13174 TPR_6: Tetratricopept 56.9 12 0.00027 20.1 2.2 19 123-141 15-33 (33)
25 PRK13708 plasmid maintenance p 56.6 17 0.00036 27.4 3.5 35 79-119 29-64 (101)
26 PF00515 TPR_1: Tetratricopept 56.3 12 0.00027 20.7 2.2 17 123-139 16-32 (34)
27 smart00252 SH2 Src homology 2 55.7 7.2 0.00016 26.1 1.4 17 117-133 3-19 (84)
28 cd00851 MTH1175 This uncharact 55.1 33 0.00073 23.4 4.7 39 81-123 2-41 (103)
29 PF13181 TPR_8: Tetratricopept 54.7 13 0.00027 20.5 2.1 17 123-139 16-32 (34)
30 PF12068 DUF3548: Domain of un 54.1 18 0.0004 30.2 3.8 58 75-136 107-164 (213)
31 smart00028 TPR Tetratricopepti 53.6 18 0.0004 17.3 2.4 16 123-138 16-31 (34)
32 PF10882 bPH_5: Bacterial PH d 52.9 16 0.00034 25.5 2.7 24 76-99 13-36 (100)
33 cd00562 NifX_NifB This CD repr 49.6 39 0.00085 22.9 4.3 40 81-124 1-40 (102)
34 PF04283 CheF-arch: Chemotaxis 48.7 79 0.0017 26.3 6.7 55 44-113 23-80 (221)
35 PF08238 Sel1: Sel1 repeat; I 47.3 20 0.00044 20.2 2.2 16 123-138 23-38 (39)
36 cd00852 NifB NifB belongs to a 47.0 33 0.00071 24.3 3.7 41 81-125 1-41 (106)
37 TIGR02681 phage_pRha phage reg 45.5 28 0.00061 25.9 3.2 31 108-138 68-107 (108)
38 PF13374 TPR_10: Tetratricopep 43.5 16 0.00034 20.5 1.3 22 123-144 17-38 (42)
39 cd00173 SH2 Src homology 2 dom 43.3 13 0.00028 25.0 1.0 17 117-133 2-18 (94)
40 smart00671 SEL1 Sel1-like repe 40.8 32 0.00069 18.9 2.3 17 122-138 19-35 (36)
41 PF13176 TPR_7: Tetratricopept 40.7 26 0.00057 20.3 2.0 13 123-135 14-26 (36)
42 PF08909 DUF1854: Domain of un 37.7 26 0.00056 27.6 2.1 35 102-136 17-53 (133)
43 PF03517 Voldacs: Regulator of 35.4 66 0.0014 24.4 4.0 15 49-63 1-15 (135)
44 cd01178 IPT_NFAT IPT domain of 35.3 70 0.0015 24.2 4.0 73 37-112 4-88 (101)
45 PF10756 bPH_6: Bacterial PH d 34.1 44 0.00095 22.4 2.5 37 80-121 18-54 (73)
46 cd01238 PH_Tec Tec pleckstrin 33.4 1.2E+02 0.0026 21.8 4.9 55 62-118 29-88 (106)
47 KOG3294 WW domain binding prot 33.2 37 0.0008 29.7 2.5 86 45-142 45-142 (261)
48 smart00512 Skp1 Found in Skp1 32.7 36 0.00078 24.1 2.0 30 104-137 2-33 (104)
49 PF14559 TPR_19: Tetratricopep 31.6 48 0.001 20.5 2.3 18 123-140 6-23 (68)
50 cd01257 PH_IRS Insulin recepto 30.7 91 0.002 22.8 3.9 37 80-119 48-84 (101)
51 smart00564 PQQ beta-propeller 30.0 74 0.0016 17.4 2.7 26 49-79 7-32 (33)
52 KOG2059 Ras GTPase-activating 28.3 24 0.00051 35.1 0.6 47 63-113 595-641 (800)
53 cd01245 PH_RasGAP_CG5898 RAS G 27.6 1.9E+02 0.0041 21.2 5.1 59 61-123 27-85 (98)
54 PF13428 TPR_14: Tetratricopep 27.6 67 0.0015 19.1 2.4 18 123-140 16-33 (44)
55 PF08512 Rtt106: Histone chape 26.6 2.4E+02 0.0052 20.1 6.9 65 37-121 5-73 (95)
56 COG3506 Uncharacterized conser 26.3 67 0.0014 26.9 2.8 37 86-123 3-42 (189)
57 PF13414 TPR_11: TPR repeat; P 25.8 61 0.0013 20.2 2.0 16 123-138 18-33 (69)
58 PF13424 TPR_12: Tetratricopep 25.6 62 0.0013 20.7 2.1 15 123-137 20-34 (78)
59 PF03681 UPF0150: Uncharacteri 24.8 1.7E+02 0.0037 17.9 3.9 33 105-137 2-44 (48)
60 KOG0937 Adaptor complexes medi 24.5 1.2E+02 0.0025 28.4 4.2 50 59-110 245-294 (424)
61 PF13432 TPR_16: Tetratricopep 23.1 85 0.0019 19.4 2.3 16 123-138 12-27 (65)
62 smart00086 PAC Motif C-termina 22.6 93 0.002 13.9 2.3 14 107-120 5-18 (43)
63 cd00189 TPR Tetratricopeptide 22.1 1E+02 0.0022 17.7 2.4 17 123-139 49-65 (100)
64 cd01264 PH_melted Melted pleck 22.0 96 0.0021 22.9 2.7 31 82-112 45-77 (101)
65 cd02680 MIT_calpain7_2 MIT: do 21.4 78 0.0017 22.4 2.0 15 123-137 21-35 (75)
66 cd00271 Chemokine_C Chemokine_ 20.9 95 0.0021 21.7 2.4 30 34-64 22-51 (72)
67 PF06115 DUF956: Domain of unk 20.8 1.6E+02 0.0035 22.9 3.8 61 47-120 23-84 (118)
68 PF14472 DUF4429: Domain of un 20.7 1.4E+02 0.003 21.3 3.3 29 82-114 27-58 (94)
69 PF03799 FtsQ: Cell division p 20.7 2.8E+02 0.0062 18.8 4.8 35 104-139 70-104 (117)
70 COG0744 MrcB Membrane carboxyp 20.7 44 0.00095 31.9 0.8 14 110-123 548-561 (661)
71 TIGR02663 nifX nitrogen fixati 20.4 2.9E+02 0.0062 20.1 5.0 40 81-124 2-41 (119)
72 PF04397 LytTR: LytTr DNA-bind 20.4 1.7E+02 0.0037 19.7 3.5 41 82-136 4-44 (98)
No 1
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.57 E-value=3.1e-15 Score=100.08 Aligned_cols=66 Identities=29% Similarity=0.506 Sum_probs=46.4
Q ss_pred eeeeccCCCccccceeeeeeeeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecC
Q 032028 19 VFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNP 94 (148)
Q Consensus 19 iFkq~F~~~~~EkLlka~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnp 94 (148)
-|++.|..+++|+|...|.|+|.++.+|+.|.||||+.++||+|+.+-.- -++++|||..|..|+.
T Consensus 2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~----------~~~~~ipl~~I~~i~k 67 (69)
T PF02893_consen 2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSK----------TCKFVIPLSDIKSIEK 67 (69)
T ss_dssp ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-----------E-EEEEEGGGEEEEEE
T ss_pred cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCc----------eEEEEEEhHheeEEEE
Confidence 58999999999999999999999988999999999999999999876651 1699999999999865
No 2
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.45 E-value=1.7e-13 Score=89.65 Aligned_cols=58 Identities=43% Similarity=0.733 Sum_probs=51.3
Q ss_pred CCccccceeeeeeeeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEE-EEEEeccccceecCC
Q 032028 26 KLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYF-KVVVDLDQLRTVNPS 95 (148)
Q Consensus 26 ~~~~EkLlka~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~Y-KVvIPL~~ik~Vnps 95 (148)
.+++|+|...|.|+|+ +.+|+.|.||||+.+++|+|+.+-. .. +++|||+.|.+|++.
T Consensus 2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~-----------~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGK-----------LTPKVVIPLADITRIEKS 60 (61)
T ss_pred cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCC-----------eeEEEEEEHHHeeEEEEC
Confidence 4689999999999999 5599999999999999999987665 23 999999999999763
No 3
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=97.69 E-value=7e-05 Score=69.75 Aligned_cols=105 Identities=24% Similarity=0.350 Sum_probs=87.5
Q ss_pred CCccccceeeeeeeeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCe
Q 032028 26 KLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKY 105 (148)
Q Consensus 26 ~~~~EkLlka~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKY 105 (148)
+.++|+|+..+.|+|+-+ =+.-|.+|||..++||-|.--=. .-|||||++.|.-+....... -.+.-
T Consensus 117 ~~~~~~l~~~~~cal~re-illQGrmyis~~~icF~s~i~gw-----------~~~~vIpf~eI~~ikk~~tag-~fpn~ 183 (590)
T KOG1032|consen 117 VPDPEILLTDYSCALQRE-ILLQGRMYISEEHICFNSNIFGW-----------ETKVVIPFDEITLIKKTKTAG-IFPNA 183 (590)
T ss_pred CCCcceeeeecchhhccc-cccccccccccceeeecccccCc-----------cceeEEeeeeeeeeehhhhcc-CCCcc
Confidence 678999999999999998 67899999999999999975443 578999999999998865544 67788
Q ss_pred EEEEEecCCeeeeeeeccHHHHHHHHHHHHhcCCCCCCC
Q 032028 106 IHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGG 144 (148)
Q Consensus 106 IqIvTvD~~eFWFMGFvnY~kA~k~L~~a~~~~~~~s~~ 144 (148)
|+|- ...-.+-|.+|+..|.+++.....+....+++++
T Consensus 184 i~i~-t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s 221 (590)
T KOG1032|consen 184 IEIT-TGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGS 221 (590)
T ss_pred eEEe-cCCCcceeeecccCccHHHHHHHhhhhcccccCC
Confidence 9888 5556677899999999999877666666666654
No 4
>PF14470 bPH_3: Bacterial PH domain
Probab=97.31 E-value=0.0053 Score=42.06 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=68.1
Q ss_pred CccccceeeeeeeeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeE
Q 032028 27 LAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI 106 (148)
Q Consensus 27 ~~~EkLlka~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYI 106 (148)
.+||+..-...|.+-...+.-.|+|+++++|+-|++-.++. . .....||+++|.+|+-.... -...|
T Consensus 2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~------~----~~~~~i~y~~I~~v~~~~g~---~~~~i 68 (96)
T PF14470_consen 2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG------G----KKFESIPYDDITSVSFKKGI---LGGKI 68 (96)
T ss_pred cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC------C----ceEEEEEhhheEEEEEEccc---cccEE
Confidence 58999999999998876788899999999999999885442 1 34589999999999876433 44679
Q ss_pred EEEEecCCeeeeeeeccHHHHHHHHHHHHh
Q 032028 107 HVVTRDGYEFWFMGFISYDKALKTLTEALR 136 (148)
Q Consensus 107 qIvTvD~~eFWFMGFvnY~kA~k~L~~a~~ 136 (148)
.|.| ++..+=| +-+.-+. ++-+-+.++
T Consensus 69 ~i~~-~~~~~~i-~~i~k~~-~~~~~~~i~ 95 (96)
T PF14470_consen 69 TIET-NGEKIKI-DNIQKGD-VKEFYEYIK 95 (96)
T ss_pred EEEE-CCEEEEE-EEcCHHH-HHHHHHHHh
Confidence 9999 5555544 4443333 344444443
No 5
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=96.07 E-value=0.0065 Score=57.91 Aligned_cols=100 Identities=23% Similarity=0.208 Sum_probs=80.8
Q ss_pred eccCCCccccceeeeeeeeeecCc--ceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCC
Q 032028 22 QEFHKLAGEKLLKAYACYISTSNG--PVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRW 99 (148)
Q Consensus 22 q~F~~~~~EkLlka~~CYLSTs~G--PvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~ 99 (148)
-.|..+ |+|.-.-.|=|.|..- -..|.||+||..+||.||-+=. -.+++||.-|+.|.... ..
T Consensus 14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~------------c~~~~Pl~~vr~ve~~~-~s 78 (671)
T KOG4347|consen 14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWL------------CSFITPLLAVRSVERLD-DS 78 (671)
T ss_pred ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCccc------------ceEeeehhhhhhhhccC-cc
Confidence 456666 9999999999999766 4789999999999999997654 46999999999997755 33
Q ss_pred CCCCCeEEEEEecCCeeeeeeeccHHHHHHHHHHHHh
Q 032028 100 NPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALR 136 (148)
Q Consensus 100 ~p~eKYIqIvTvD~~eFWFMGFvnY~kA~k~L~~a~~ 136 (148)
+--+.=|.+.|..+-.|-|-|++..++.+.-+..-..
T Consensus 79 s~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~~~~~~ 115 (671)
T KOG4347|consen 79 SLFTQLISLFTSNMVGMRFGGLTERLKLLSKLHLPPA 115 (671)
T ss_pred ccchhhhHHhhcCcceEEecchhhHHHHHHHHhchHh
Confidence 3334457889999999999999999998876654433
No 6
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=95.52 E-value=0.036 Score=39.58 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=57.1
Q ss_pred cceeeeeeeeeecCcceeeEEEEeeceEEEecCCceee---eCCC-CCeeeeEEEEEEeccccceecCCCCCCCCCCCeE
Q 032028 31 KLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSH---YSSS-GQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI 106 (148)
Q Consensus 31 kLlka~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~---~~p~-g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYI 106 (148)
|.+-++.|-+=|..+-+.|+|.|++..+.|..|..-.. .... .......--..+|+++|+.|-+ -+....+..|
T Consensus 1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~--RRyllr~~Al 78 (106)
T PF14844_consen 1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHK--RRYLLRDTAL 78 (106)
T ss_dssp --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEE--EEETTEEEEE
T ss_pred CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHH--HHhcCcceEE
Confidence 34567899999999999999999999999998811100 0000 0011112335689999999987 4555668899
Q ss_pred EEEEecCCeeee
Q 032028 107 HVVTRDGYEFWF 118 (148)
Q Consensus 107 qIvTvD~~eFWF 118 (148)
||.+.||.-+.|
T Consensus 79 EiF~~dg~s~f~ 90 (106)
T PF14844_consen 79 EIFFSDGRSYFF 90 (106)
T ss_dssp EEEETTS-EEEE
T ss_pred EEEEcCCcEEEE
Confidence 999999998754
No 7
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=89.70 E-value=2.8 Score=27.25 Aligned_cols=64 Identities=23% Similarity=0.258 Sum_probs=45.7
Q ss_pred ceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCC----CCCCCCeEEEEEecCCeeeeee
Q 032028 56 QRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANR----WNPSEKYIHVVTRDGYEFWFMG 120 (148)
Q Consensus 56 ~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~----~~p~eKYIqIvTvD~~eFWFMG 120 (148)
+|.++-.+.-|.+..++.+......+-+|||..+ .|.+..+. ..+.+..++|.+.++-.|+|..
T Consensus 19 ~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~ 86 (104)
T PF00169_consen 19 KRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSA 86 (104)
T ss_dssp EEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEE
T ss_pred EEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEEc
Confidence 4455555555655555554455578889999999 66666665 3688899999999987888764
No 8
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=85.74 E-value=2.5 Score=37.86 Aligned_cols=85 Identities=18% Similarity=0.357 Sum_probs=68.5
Q ss_pred ccCCCccccceeee--eeeeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCC
Q 032028 23 EFHKLAGEKLLKAY--ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWN 100 (148)
Q Consensus 23 ~F~~~~~EkLlka~--~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~ 100 (148)
..-+.|+|++.... .+-||..-|=+ |+++||+-|+..|+|---. |.|.||.=+|+++.-.+.+-
T Consensus 148 ~L~lLp~E~v~~~~~gVwnls~dqGnL-GtfivTNvRiVW~A~~ne~------------fNVSiPylqi~~i~ir~SKf- 213 (339)
T PF07289_consen 148 QLKLLPQEQVYSRVNGVWNLSSDQGNL-GTFIVTNVRIVWFADMNES------------FNVSIPYLQIKSIRIRDSKF- 213 (339)
T ss_pred eEeeCCccEEeeccCCEEEcccCCCce-eEEEEeeeEEEEEccCCcc------------ccccchHhhheeeeeecccc-
Confidence 34567888887766 47899998887 9999999999999997766 88999999999998766655
Q ss_pred CCCCeEEEEEecCCeeeeeeecc
Q 032028 101 PSEKYIHVVTRDGYEFWFMGFIS 123 (148)
Q Consensus 101 p~eKYIqIvTvD~~eFWFMGFvn 123 (148)
-+.+-|-|....-=.-.||..
T Consensus 214 --G~aLVieT~~~sGgYVLGFRv 234 (339)
T PF07289_consen 214 --GPALVIETSESSGGYVLGFRV 234 (339)
T ss_pred --ceEEEEEEeccCCcEEEEEEc
Confidence 345777777766667789974
No 9
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=85.58 E-value=1.6 Score=29.63 Aligned_cols=39 Identities=26% Similarity=0.494 Sum_probs=31.9
Q ss_pred ecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceec
Q 032028 42 TSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVN 93 (148)
Q Consensus 42 Ts~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vn 93 (148)
...| --|+|++++-|+...|+..-. +.|.||.-+|..++
T Consensus 15 gn~G-~~G~l~VTNlRiiW~s~~~~~------------~NlSIgy~~i~~i~ 53 (55)
T smart00683 15 GNNG-DLGVFFVTNLRLVWHSDTNPR------------FNISVGYLQITNVR 53 (55)
T ss_pred CCCC-CeeEEEEEeeEEEEEeCCCCc------------eEEEEcceeEEEEE
Confidence 3456 359999999999999997654 78999999888774
No 10
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=82.73 E-value=8.3 Score=24.16 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=30.3
Q ss_pred eEEEEEEeccccceecCCCCCC-CCCCCeEEEEEecCCeeeeeee
Q 032028 78 VYFKVVVDLDQLRTVNPSANRW-NPSEKYIHVVTRDGYEFWFMGF 121 (148)
Q Consensus 78 ~~YKVvIPL~~ik~Vnps~n~~-~p~eKYIqIvTvD~~eFWFMGF 121 (148)
....-.|||+.+ .|....+.. .+....+.|.+.++..++|..-
T Consensus 42 ~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~ 85 (102)
T smart00233 42 YKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRSYLLQAE 85 (102)
T ss_pred CCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCceEEEEcC
Confidence 466778999999 444433332 4567888888888878888763
No 11
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=80.11 E-value=7.8 Score=27.41 Aligned_cols=54 Identities=19% Similarity=0.384 Sum_probs=34.6
Q ss_pred eeeEEEEeece--EEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeEEEEEecC
Q 032028 47 VIGTLYISTQR--MAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDG 113 (148)
Q Consensus 47 vaG~LyiSt~k--vAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~ 113 (148)
+.|+|+|++.| +...-+. .++. . .|.||+..|+.-.. +.+..+.==++|+-.|+
T Consensus 12 ~~G~L~l~~d~~~~~W~~~~------~~~~-~----~v~i~~~~I~~lq~--Sp~~s~Kv~Lki~~~~~ 67 (79)
T PF08567_consen 12 KDGTLTLTEDRKPLEWTPKA------SDGP-S----TVSIPLNDIKNLQQ--SPEGSPKVMLKIVLKDD 67 (79)
T ss_dssp EEEEEEEETTCSSEEEEECC------SSSS-S----EEEEETTTEEEEEE----TTSSTEEEEEEETTS
T ss_pred CCcEEEEecCCceEEEeecC------CCCC-c----eEEEEHHHhhhhcc--CCCCCcceEEEEEEecC
Confidence 35999999887 6664331 1111 1 59999999998765 33434445678887766
No 12
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=80.04 E-value=2.1 Score=31.02 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=32.8
Q ss_pred ceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCC
Q 032028 46 PVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEK 104 (148)
Q Consensus 46 PvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eK 104 (148)
=-.|+||+||.|+.+--|.... -.-+.|||+.|..+.-....-+.+.|
T Consensus 35 ~q~G~l~LTsHRliw~d~~~~~-----------~~s~~l~L~~i~~~e~~~gf~~sSpK 82 (89)
T PF11605_consen 35 FQNGRLYLTSHRLIWVDDSDPS-----------KHSIALPLSLISHIEYSAGFLKSSPK 82 (89)
T ss_dssp -SCEEEEEESSEEEEEESSGHC-----------HH-EEEEGGGEEEEEEE-STTSSS-E
T ss_pred ccCCEEEEEeeEEEEEcCCCCc-----------eeEEEEEchHeEEEEEEccccCCCCe
Confidence 3489999999999997554332 13488999999998665555555555
No 13
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.21 E-value=12 Score=36.63 Aligned_cols=96 Identities=23% Similarity=0.278 Sum_probs=61.3
Q ss_pred eeeccCCCccccce-eeeeeeeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCC
Q 032028 20 FQQEFHKLAGEKLL-KAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANR 98 (148)
Q Consensus 20 Fkq~F~~~~~EkLl-ka~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~ 98 (148)
..-.|...|||.++ .+|.|=+ .||+.|+|.||+-|+=|-|.-.=+ +|-+-|||.-|.+|+.-.-.
T Consensus 30 ~~~~~~~L~GE~i~~~~y~c~f---~G~~~g~l~lsNyRl~fks~~t~~-----------~~~~~VPLg~Ie~vek~~~~ 95 (717)
T KOG4471|consen 30 LQVPFPLLPGESIIDEKYICPF---LGAVDGTLALSNYRLYFKSKETDP-----------PFVLDVPLGVIERVEKRGGA 95 (717)
T ss_pred ccCcccccCCcccccceecccc---cccccceEEeeeeEEEEEeccCCC-----------ceeEeechhhhhhhhhcCcc
Confidence 45667788999884 3355544 589999999999999998764322 67789999999999775533
Q ss_pred CCCCCCeEEEEEecCCeeeeeeeccHHHHHH
Q 032028 99 WNPSEKYIHVVTRDGYEFWFMGFISYDKALK 129 (148)
Q Consensus 99 ~~p~eKYIqIvTvD~~eFWFMGFvnY~kA~k 129 (148)
..-+.-|--.||--+-.=.=-+|-..+++-.
T Consensus 96 ~~g~ns~~L~i~CKDmr~lR~~fk~~~q~r~ 126 (717)
T KOG4471|consen 96 TSGENSFGLEITCKDMRNLRCAFKQEEQCRR 126 (717)
T ss_pred ccCCcceeEEEEeccccceeeecCcccccHH
Confidence 3222233333333333333335555555553
No 14
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=73.80 E-value=9.2 Score=29.22 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=60.8
Q ss_pred ccceeeeeeeeeecCcceeeEEEEeeceEEEecCCcee-eeCCCCCe----eeeEEEEEEeccccceecCCCCCCCCCCC
Q 032028 30 EKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLS-HYSSSGQQ----EWVYFKVVVDLDQLRTVNPSANRWNPSEK 104 (148)
Q Consensus 30 EkLlka~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~-~~~p~g~~----~~~~YKVvIPL~~ik~Vnps~n~~~p~eK 104 (148)
|++.=+..|-+=|...-+.|+|=|||.++-|-=|..-. +...+.+. ..-+. -+||++|++|-. -+.+....
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~--~w~ls~Ir~v~~--RRylLr~~ 76 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHG--KWPFSEIRAIFS--RRYLLQNT 76 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccc--eeeHHHHHHHHH--Hhhhcccc
Confidence 34455688999999999999999999999998653221 22211111 11122 489999999966 56677788
Q ss_pred eEEEEEecCCeeee
Q 032028 105 YIHVVTRDGYEFWF 118 (148)
Q Consensus 105 YIqIvTvD~~eFWF 118 (148)
.|||.-.|+..+.|
T Consensus 77 alEiF~~d~~~~f~ 90 (108)
T cd01201 77 ALELFLASRTSIFF 90 (108)
T ss_pred eEEEEEeCCceEEE
Confidence 99999999987755
No 15
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=73.23 E-value=1.9 Score=33.21 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=18.7
Q ss_pred CCCCCCCCeEEEEEecCCeeee
Q 032028 97 NRWNPSEKYIHVVTRDGYEFWF 118 (148)
Q Consensus 97 n~~~p~eKYIqIvTvD~~eFWF 118 (148)
--+-|.++|+.+|+.|||||-.
T Consensus 10 g~egp~~~yVkLvS~Ddhefii 31 (112)
T KOG3473|consen 10 GCEGPDSMYVKLVSSDDHEFII 31 (112)
T ss_pred CccCcchhheEeecCCCcEEEE
Confidence 3456899999999999999964
No 16
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=67.44 E-value=14 Score=26.89 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=25.0
Q ss_pred EEEEEEeccccceecCCCCCCCCCCCeEEEEEecC
Q 032028 79 YFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDG 113 (148)
Q Consensus 79 ~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~ 113 (148)
.-+=.|||..|+.|....+....-+.=+||||.|.
T Consensus 42 ~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r 76 (98)
T cd01244 42 KKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDD 76 (98)
T ss_pred ceeeeEEccceEEEEEcCCcccCCCceEEEEeCCC
Confidence 45568999999999776654333333499999875
No 17
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=64.09 E-value=8 Score=21.10 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHHhcCCC
Q 032028 123 SYDKALKTLTEALRRFPD 140 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~~~ 140 (148)
+|++|.+++++|+....+
T Consensus 16 ~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 16 NYEEAIEYFEKALELDPN 33 (34)
T ss_dssp -HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 689999999999976543
No 18
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=63.15 E-value=27 Score=21.80 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=41.1
Q ss_pred cceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeEEEEEec--CCeeeeeee
Q 032028 45 GPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRD--GYEFWFMGF 121 (148)
Q Consensus 45 GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD--~~eFWFMGF 121 (148)
..-...+.|++..+-++++.+-+.... -++|+..+. |....... -...-++|++.+ +..++|..-
T Consensus 18 ~w~~~~~~l~~~~l~~~~~~~~~~~~~----------~~~~l~~~~-v~~~~~~~-~~~~~F~i~~~~~~~~~~~~~~~ 84 (99)
T cd00900 18 RWKRRWFFLFDDGLLLYKSDDKKEIKP----------GSIPLSEIS-VEEDPDGS-DDPNCFAIVTKDRGRRVFVFQAD 84 (99)
T ss_pred CceeeEEEEECCEEEEEEcCCCCcCCC----------CEEEccceE-EEECCCCC-CCCceEEEECCCCCcEEEEEEcC
Confidence 444555666666676666665442111 578999988 76654332 345788888887 777777653
No 19
>PF01845 CcdB: CcdB protein; InterPro: IPR002712 CcdB protein is a topoisomerase poison from Escherichia coli []. It is responsible for killing plasmid-free segregants, and interferes with the activity of DNA gyrase. It acts to inhibit partitioning of the chromosomal DNA.; GO: 0008657 DNA topoisomerase (ATP-hydrolyzing) inhibitor activity, 0006276 plasmid maintenance; PDB: 2VUB_G 1VUB_D 3VUB_A 1X75_C 3HPW_B 4VUB_A 4ELZ_D 2KMT_B 4ELY_C 3JRZ_A ....
Probab=61.74 E-value=11 Score=28.00 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=24.7
Q ss_pred EEEEEEeccccceec-CCCCCCCCCCCeEEEEEecCCeeeee
Q 032028 79 YFKVVVDLDQLRTVN-PSANRWNPSEKYIHVVTRDGYEFWFM 119 (148)
Q Consensus 79 ~YKVvIPL~~ik~Vn-ps~n~~~p~eKYIqIvTvD~~eFWFM 119 (148)
.++|||||-...... +...+-|| ++++||.+|-.|
T Consensus 30 ~tRvVvPL~~~~~~~~~~~~~L~P------~~~i~g~~~vl~ 65 (102)
T PF01845_consen 30 NTRVVVPLLPLSNLPGKPPRRLNP------VFEIEGEDYVLM 65 (102)
T ss_dssp SEEEEEEEEEGGGTSSTS-TTTS-------EEEETTEEEEE-
T ss_pred CcEEEEecCchhhcCcccCCceee------EEEECCEEEEEE
Confidence 478999999888775 43444444 789999998754
No 20
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=60.01 E-value=6 Score=26.13 Aligned_cols=14 Identities=43% Similarity=0.774 Sum_probs=11.9
Q ss_pred CeEEEEEecCCeee
Q 032028 104 KYIHVVTRDGYEFW 117 (148)
Q Consensus 104 KYIqIvTvD~~eFW 117 (148)
+||.++|.||++|=
T Consensus 1 ~~v~L~SsDg~~f~ 14 (62)
T PF03931_consen 1 MYVKLVSSDGQEFE 14 (62)
T ss_dssp -EEEEEETTSEEEE
T ss_pred CEEEEEcCCCCEEE
Confidence 58999999999984
No 21
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=59.72 E-value=26 Score=27.24 Aligned_cols=39 Identities=18% Similarity=0.401 Sum_probs=27.6
Q ss_pred EEEEEEeccccceecCCCCCC---CCCCCeEEEEEecCCeeeeee
Q 032028 79 YFKVVVDLDQLRTVNPSANRW---NPSEKYIHVVTRDGYEFWFMG 120 (148)
Q Consensus 79 ~YKVvIPL~~ik~Vnps~n~~---~p~eKYIqIvTvD~~eFWFMG 120 (148)
||| .|||..|-.|.++.+.. ....-..+|+| .+--| |+|
T Consensus 39 yyK-eIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T-~~~vY-~VG 80 (117)
T cd01239 39 YYK-EIPLAEILSVSSNNGDSVLAKHPPHCFEIRT-TTNVY-FVG 80 (117)
T ss_pred eeE-EeehHHheEEeccCCCcCCCCCCCcEEEEEe-cCEEE-Eec
Confidence 777 58999999998654432 24678999999 44444 454
No 22
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=58.35 E-value=5.6 Score=26.26 Aligned_cols=17 Identities=47% Similarity=0.903 Sum_probs=16.3
Q ss_pred eeeeeccHHHHHHHHHH
Q 032028 117 WFMGFISYDKALKTLTE 133 (148)
Q Consensus 117 WFMGFvnY~kA~k~L~~ 133 (148)
||.|+++-+.|-+.|++
T Consensus 1 W~~g~isr~~Ae~~L~~ 17 (77)
T PF00017_consen 1 WFHGFISRQEAERLLMQ 17 (77)
T ss_dssp TBEESSHHHHHHHHHHT
T ss_pred CcCCCCCHHHHHHHHHh
Confidence 99999999999999997
No 23
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=57.90 E-value=42 Score=20.67 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=35.9
Q ss_pred EEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeee
Q 032028 51 LYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFM 119 (148)
Q Consensus 51 LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFM 119 (148)
+++....+.+|++.+-.. ....+-+|||.. ..|....+.. ..+..++|++.++..+.|.
T Consensus 21 ~~L~~~~l~~~~~~~~~~--------~~~~~~~i~l~~-~~v~~~~~~~-~~~~~f~i~~~~~~~~~~~ 79 (96)
T cd00821 21 FVLFNDLLLYYKKKSSKK--------SYKPKGSIPLSG-AEVEESPDDS-GRKNCFEIRTPDGRSYLLQ 79 (96)
T ss_pred EEEECCEEEEEECCCCCc--------CCCCcceEEcCC-CEEEECCCcC-CCCcEEEEecCCCcEEEEE
Confidence 444455555655544211 234567788888 4444333322 4678999999888888886
No 24
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=56.86 E-value=12 Score=20.08 Aligned_cols=19 Identities=32% Similarity=0.859 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHhcCCCC
Q 032028 123 SYDKALKTLTEALRRFPDT 141 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~~~~ 141 (148)
++++|.+.+++++.++.++
T Consensus 15 ~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 15 DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 6899999999999887654
No 25
>PRK13708 plasmid maintenance protein CcdB; Provisional
Probab=56.62 E-value=17 Score=27.40 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=26.3
Q ss_pred EEEEEEeccccceecCCC-CCCCCCCCeEEEEEecCCeeeee
Q 032028 79 YFKVVVDLDQLRTVNPSA-NRWNPSEKYIHVVTRDGYEFWFM 119 (148)
Q Consensus 79 ~YKVvIPL~~ik~Vnps~-n~~~p~eKYIqIvTvD~~eFWFM 119 (148)
..+|||||-......+.. .+-|| ++++||.+|--|
T Consensus 29 ~tRvViPL~~~~~~~~~~~~rL~P------~~~I~g~~~vl~ 64 (101)
T PRK13708 29 GRRMVIPLASARLLSDKVSRELYP------VVHIGDESYRLM 64 (101)
T ss_pred CceEEEeCccHHHCCCCcCCCcCc------eEEECCeEEEEE
Confidence 367999999988886544 34444 788999999765
No 26
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=56.30 E-value=12 Score=20.69 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHHhcCC
Q 032028 123 SYDKALKTLTEALRRFP 139 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~~ 139 (148)
+|++|++++++|+....
T Consensus 16 ~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 16 DYEEALEYYQRALELDP 32 (34)
T ss_dssp -HHHHHHHHHHHHHHST
T ss_pred CchHHHHHHHHHHHHCc
Confidence 68999999999997543
No 27
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=55.71 E-value=7.2 Score=26.05 Aligned_cols=17 Identities=47% Similarity=0.909 Sum_probs=16.3
Q ss_pred eeeeeccHHHHHHHHHH
Q 032028 117 WFMGFISYDKALKTLTE 133 (148)
Q Consensus 117 WFMGFvnY~kA~k~L~~ 133 (148)
||.|.++.+.|-+.|++
T Consensus 3 w~~g~i~r~~Ae~lL~~ 19 (84)
T smart00252 3 WYHGFISREEAEKLLKN 19 (84)
T ss_pred eecccCCHHHHHHHHhc
Confidence 99999999999999987
No 28
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=55.06 E-value=33 Score=23.36 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=28.9
Q ss_pred EEEEeccccc-eecCCCCCCCCCCCeEEEEEecCCeeeeeeecc
Q 032028 81 KVVVDLDQLR-TVNPSANRWNPSEKYIHVVTRDGYEFWFMGFIS 123 (148)
Q Consensus 81 KVvIPL~~ik-~Vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvn 123 (148)
||.||.+.-+ .|+++-... +|+.|+.+|+....+...+.
T Consensus 2 ~IAv~~~~~~~~v~~hFg~a----~~f~i~d~~~~~~~~~~~~~ 41 (103)
T cd00851 2 KIAIPVSGNGGKVSPHFGRA----PYFLIYDVETGKIKNVEVIE 41 (103)
T ss_pred EEEEEecCCCccccCccccC----CEEEEEEccCCcEeEEEEec
Confidence 6888888777 676665544 78888888888777766664
No 29
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=54.74 E-value=13 Score=20.49 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHHHhcCC
Q 032028 123 SYDKALKTLTEALRRFP 139 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~~ 139 (148)
+|++|.++++++++-.+
T Consensus 16 ~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 16 DYEEALEYFEKALELNP 32 (34)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 68999999999987543
No 30
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=54.05 E-value=18 Score=30.17 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=39.3
Q ss_pred eeeeEEEEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeeeeeccHHHHHHHHHHHHh
Q 032028 75 QEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALR 136 (148)
Q Consensus 75 ~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvnY~kA~k~L~~a~~ 136 (148)
..++.|.+.|||..|+++..+.... .-.||.++|-||..| --+-=++.-.+.|-++++
T Consensus 107 ~~~~~~aFsv~lsdl~Si~~~~p~~--G~~~lv~~~kdG~~~--p~L~Fh~gg~~~fl~~L~ 164 (213)
T PF12068_consen 107 SSRSSYAFSVPLSDLKSIRVSKPSL--GWWYLVFILKDGTSL--PPLHFHDGGSKEFLKSLQ 164 (213)
T ss_pred CCCcceEEEEEhhheeeEEecCCCC--CceEEEEEecCCCcc--CceEEecCCHHHHHHHHH
Confidence 3567889999999999997644322 668999999999765 333334444444444443
No 31
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=53.63 E-value=18 Score=17.28 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHhcC
Q 032028 123 SYDKALKTLTEALRRF 138 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~ 138 (148)
+|++|..++++++...
T Consensus 16 ~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 16 DYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHccC
Confidence 6899999999998653
No 32
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=52.88 E-value=16 Score=25.52 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=19.9
Q ss_pred eeeEEEEEEeccccceecCCCCCC
Q 032028 76 EWVYFKVVVDLDQLRTVNPSANRW 99 (148)
Q Consensus 76 ~~~~YKVvIPL~~ik~Vnps~n~~ 99 (148)
.|..+++.||+++|..|....+..
T Consensus 13 ~~~~~~~~Ip~~~I~~v~~~~~~~ 36 (100)
T PF10882_consen 13 RWPFGKITIPLAEIESVELVDDLP 36 (100)
T ss_pred EEccccEEEEHHHcEEEEeccccC
Confidence 566789999999999998766554
No 33
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=49.61 E-value=39 Score=22.90 Aligned_cols=40 Identities=10% Similarity=-0.027 Sum_probs=29.5
Q ss_pred EEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeeeeeccH
Q 032028 81 KVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISY 124 (148)
Q Consensus 81 KVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvnY 124 (148)
||.||.+.-+.|+++--+. +|+.|+.+++.++++...+.-
T Consensus 1 kIAi~~~~~~~v~~hFg~A----~~f~I~d~~~~~~~~~e~~~n 40 (102)
T cd00562 1 KIAVASSDGGRVDQHFGRA----PEFLIYEVEPGGIKLVEVREN 40 (102)
T ss_pred CEEEEcCCCCEehhhcCCC----CeEEEEEEcCCcEEEEEEEec
Confidence 5778887777777666554 688888888888877776643
No 34
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=48.69 E-value=79 Score=26.31 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=38.4
Q ss_pred CcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCC---CCCCCCCCCeEEEEEecC
Q 032028 44 NGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPS---ANRWNPSEKYIHVVTRDG 113 (148)
Q Consensus 44 ~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps---~n~~~p~eKYIqIvTvD~ 113 (148)
+.|+.|.+.||+.|+-|-++ .-|+.|||.+|.-|.-- .....+..-|+.|..-.+
T Consensus 23 ~~W~~~rIiLs~~rlvl~~~---------------~~k~~Ipls~I~Di~~~~~~~~~~~~~~~~~si~~~~~ 80 (221)
T PF04283_consen 23 GKWVKGRIILSNDRLVLAFN---------------DGKITIPLSSIEDIGVRLPPNQLLAFFSDYVSIKYKSD 80 (221)
T ss_pred CCcEEEEEEEecCEEEEEcC---------------CCeEEEecceeEecccccCccccccccCceEEEEEecC
Confidence 67999999999999998772 24579999999877442 122234455666555544
No 35
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=47.34 E-value=20 Score=20.19 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHHHhcC
Q 032028 123 SYDKALKTLTEALRRF 138 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~ 138 (148)
|+++|++++++|..+.
T Consensus 23 d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHcc
Confidence 7999999999998764
No 36
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=47.01 E-value=33 Score=24.26 Aligned_cols=41 Identities=17% Similarity=0.065 Sum_probs=30.4
Q ss_pred EEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeeeeeccHH
Q 032028 81 KVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYD 125 (148)
Q Consensus 81 KVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvnY~ 125 (148)
||.||...-..|+++--+. +|.-|..+++.+++|+......
T Consensus 1 kIAv~s~~~~~V~~HFG~a----~~F~Iydv~~~~~~~ve~~~~~ 41 (106)
T cd00852 1 LVAVASKGGGRVNQHFGHA----TEFQIYEVSGSGVKFVEHRKVD 41 (106)
T ss_pred CEEEECCCCCEehhhccCC----CEEEEEEEcCCcEEEEEEeecC
Confidence 4667765555777766655 6888999999999999887554
No 37
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=45.50 E-value=28 Score=25.95 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=26.1
Q ss_pred EEEecCCeeeeeee---------ccHHHHHHHHHHHHhcC
Q 032028 108 VVTRDGYEFWFMGF---------ISYDKALKTLTEALRRF 138 (148)
Q Consensus 108 IvTvD~~eFWFMGF---------vnY~kA~k~L~~a~~~~ 138 (148)
..|-||+.+.-||| ..|-+||+-+++.|++.
T Consensus 68 ~ltkdgf~lLvmg~tg~ka~~fK~~yI~~Fn~ME~~l~~~ 107 (108)
T TIGR02681 68 NLTEDGFTIVAMGYTTPKAMKMKEKFIKEFNEMKEHLQKV 107 (108)
T ss_pred EEcCCceEEEEecCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35999999999999 45888899999988753
No 38
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=43.46 E-value=16 Score=20.47 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHhcCCCCCCC
Q 032028 123 SYDKALKTLTEALRRFPDTSGG 144 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~~~~s~~ 144 (148)
+|++|.+++++++.-.+..-|.
T Consensus 17 ~~~~A~~~~~~al~~~~~~~G~ 38 (42)
T PF13374_consen 17 RYEEALELLEEALEIRERLLGP 38 (42)
T ss_dssp -HHHHHHHHHHHHHHH------
T ss_pred hcchhhHHHHHHHHHHHHHhcc
Confidence 6899999999999765544443
No 39
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=43.27 E-value=13 Score=24.97 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=16.3
Q ss_pred eeeeeccHHHHHHHHHH
Q 032028 117 WFMGFISYDKALKTLTE 133 (148)
Q Consensus 117 WFMGFvnY~kA~k~L~~ 133 (148)
||.|.++.+.|-+.|++
T Consensus 2 w~~g~i~r~~Ae~~L~~ 18 (94)
T cd00173 2 WYHGPISREEAEELLKK 18 (94)
T ss_pred ccccCCCHHHHHHHHhc
Confidence 99999999999999996
No 40
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=40.82 E-value=32 Score=18.91 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=14.5
Q ss_pred ccHHHHHHHHHHHHhcC
Q 032028 122 ISYDKALKTLTEALRRF 138 (148)
Q Consensus 122 vnY~kA~k~L~~a~~~~ 138 (148)
.++++|++++++|..+.
T Consensus 19 ~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 19 KDLEKALEYYKKAAELG 35 (36)
T ss_pred cCHHHHHHHHHHHHHcc
Confidence 48999999999998764
No 41
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=40.69 E-value=26 Score=20.28 Aligned_cols=13 Identities=38% Similarity=0.685 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHHH
Q 032028 123 SYDKALKTLTEAL 135 (148)
Q Consensus 123 nY~kA~k~L~~a~ 135 (148)
+|++|..++++|+
T Consensus 14 ~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 14 DYEKAIEYYEQAL 26 (36)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6999999999966
No 42
>PF08909 DUF1854: Domain of unknown function (DUF1854); InterPro: IPR015005 These protein is functionally uncharacterised. It is found at the C terminus of a number of ATP transporter proteins suggesting it may be involved in ligand binding.
Probab=37.69 E-value=26 Score=27.57 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=24.4
Q ss_pred CCCeEEEEEecCCe-eeeeeeccHHH-HHHHHHHHHh
Q 032028 102 SEKYIHVVTRDGYE-FWFMGFISYDK-ALKTLTEALR 136 (148)
Q Consensus 102 ~eKYIqIvTvD~~e-FWFMGFvnY~k-A~k~L~~a~~ 136 (148)
.+.||.+++.||+| +|.--+=--+. +.+.+++++.
T Consensus 17 P~~~isl~~~~G~El~~I~~l~~L~~~~r~lle~eLa 53 (133)
T PF08909_consen 17 PDEGISLVDEDGHELAWIDDLDDLPEESRALLEEELA 53 (133)
T ss_pred CCccEEEEcCCCcEEEEEcChhHCCHHHHHHHHHHHH
Confidence 35899999999999 88765543333 3555666664
No 43
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=35.42 E-value=66 Score=24.41 Aligned_cols=15 Identities=40% Similarity=0.877 Sum_probs=13.6
Q ss_pred eEEEEeeceEEEecC
Q 032028 49 GTLYISTQRMAFCSD 63 (148)
Q Consensus 49 G~LyiSt~kvAFcSd 63 (148)
|.|||++.+|.+-|+
T Consensus 1 g~L~Vt~~~l~w~~~ 15 (135)
T PF03517_consen 1 GTLYVTESRLIWFSN 15 (135)
T ss_dssp EEEEEETTEEEEEET
T ss_pred CEEEEecCEEEEECC
Confidence 899999999999883
No 44
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=35.32 E-value=70 Score=24.16 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=50.0
Q ss_pred eeeeeecCcceee--EEEEeeceEEEecCCceeee--CCCCCeeeeEEEEEEeccccceec--------CCCCCCCCCCC
Q 032028 37 ACYISTSNGPVIG--TLYISTQRMAFCSDYPLSHY--SSSGQQEWVYFKVVVDLDQLRTVN--------PSANRWNPSEK 104 (148)
Q Consensus 37 ~CYLSTs~GPvaG--~LyiSt~kvAFcSdrpl~~~--~p~g~~~~~~YKVvIPL~~ik~Vn--------ps~n~~~p~eK 104 (148)
.|-+|.++|+|.| -|||.-.|+ .-|--+.|. .++|+..|--+=-+-+ +.++.+- ...+...|.+=
T Consensus 4 I~r~s~~s~sv~GG~Ev~Ll~~k~--~kDikV~F~E~~~dG~~~WE~~a~f~~-~~~hQ~aIvf~tPpY~~~~I~~pV~V 80 (101)
T cd01178 4 IEKKSLNSCSVNGGEELFLTGKNF--LKDSKVVFQEKGQDGEAQWEAEATIDK-EKSHQNHLVVEVPPYHNKHVAAPVQV 80 (101)
T ss_pred eEEeccCceeecCCCEEEEEehhc--CCCCEEEEEEeCCCCccceEEEEEeCh-HhceeeeEEEecCCCCCCCcCCceEE
Confidence 6889999999999 589999996 568777777 4788888876544433 2222110 12355667778
Q ss_pred eEEEEEec
Q 032028 105 YIHVVTRD 112 (148)
Q Consensus 105 YIqIvTvD 112 (148)
.|++++-+
T Consensus 81 ~~~l~~~~ 88 (101)
T cd01178 81 QFYVVNGK 88 (101)
T ss_pred EEEEEcCC
Confidence 88887643
No 45
>PF10756 bPH_6: Bacterial PH domain; InterPro: IPR019692 Proteins in this entry are conserved in the Actinomycetales. Although several members are annotated as RbiX homologues, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed. This entry also includes low molecular weight protein antigen 6.
Probab=34.08 E-value=44 Score=22.40 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=30.6
Q ss_pred EEEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeeeee
Q 032028 80 FKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGF 121 (148)
Q Consensus 80 YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFMGF 121 (148)
-...||.++|..|. .....+++.+.+.|+..++||+.
T Consensus 18 rt~~vpW~~I~~v~-----~~~~~~~v~~~~~dg~~~~l~~~ 54 (73)
T PF10756_consen 18 RTRRVPWSEIAGVR-----FRRGRRWVRLDLRDGRLVPLPAV 54 (73)
T ss_pred eeEEEChHHeEEEE-----ccCCceEEEEECCCCCEEEEeeE
Confidence 34679999999996 34566779999999999999985
No 46
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=33.44 E-value=1.2e+02 Score=21.75 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=31.5
Q ss_pred cCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCC----C-CCeEEEEEecCCeeee
Q 032028 62 SDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNP----S-EKYIHVVTRDGYEFWF 118 (148)
Q Consensus 62 Sdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p----~-eKYIqIvTvD~~eFWF 118 (148)
+|.-|.|+....+. ...-|=.|||+++..|.+..+..++ . +--++|+|.|. -|.+
T Consensus 29 ~~~~L~Yyk~~~~~-~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~r-~~yl 88 (106)
T cd01238 29 TKSKLSYYEGDFEK-RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDEG-TLYV 88 (106)
T ss_pred cCCEEEEECCCccc-ccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCCC-eEEE
Confidence 34445554432221 2234458999999999876666544 2 33468888654 3433
No 47
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=33.21 E-value=37 Score=29.72 Aligned_cols=86 Identities=22% Similarity=0.363 Sum_probs=49.2
Q ss_pred cceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeE--EEEEecCCe-----ee
Q 032028 45 GPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI--HVVTRDGYE-----FW 117 (148)
Q Consensus 45 GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYI--qIvTvD~~e-----FW 117 (148)
|=--|+||+|+.||-|-|+.+-. . ---.++|+..|+.++--+-.- .-+|| +|-.+-|-- =|
T Consensus 45 g~kkGtlyLTs~RiIFis~~~~D------~----fksF~MPf~~mkd~klnQPvF--~aNyikGtV~pvpgGg~~g~as~ 112 (261)
T KOG3294|consen 45 GTKKGTLYLTSHRIIFISSKPKD------A----FKSFMMPFNLMKDVKLNQPVF--GANYIKGTVQPVPGGGWEGEASF 112 (261)
T ss_pred cceeeeEEeecceEEEecCCCCc------c----hhhhcchhhhhhhceecCccc--ccceeeeeEeecCCCCccceeEE
Confidence 33569999999999999987532 0 112567888887774422221 33454 233332221 22
Q ss_pred ee-----eeccHHHHHHHHHHHHhcCCCCC
Q 032028 118 FM-----GFISYDKALKTLTEALRRFPDTS 142 (148)
Q Consensus 118 FM-----GFvnY~kA~k~L~~a~~~~~~~s 142 (148)
=| |=+++-.++-.+-+..++.+..|
T Consensus 113 Kl~F~~GG~ieFgq~~l~~~s~a~r~r~~s 142 (261)
T KOG3294|consen 113 KLTFNEGGCIEFGQLLLQAASRASRGRPLS 142 (261)
T ss_pred EEEecCCCchhHHHHHHHHHHHHHhccccc
Confidence 23 55677777666666655555444
No 48
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=32.65 E-value=36 Score=24.15 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=20.1
Q ss_pred CeEEEEEecCCeeeeeeeccHHHHHH--HHHHHHhc
Q 032028 104 KYIHVVTRDGYEFWFMGFISYDKALK--TLTEALRR 137 (148)
Q Consensus 104 KYIqIvTvD~~eFWFMGFvnY~kA~k--~L~~a~~~ 137 (148)
+|+.++|.||++|= |..+-|.+ .++..+..
T Consensus 2 ~~v~L~S~Dg~~f~----v~~~~a~~S~~i~~~l~~ 33 (104)
T smart00512 2 KYIKLISSDGEVFE----VEREVARQSKTIKAMIED 33 (104)
T ss_pred CeEEEEeCCCCEEE----ecHHHHHHHHHHHHHHHc
Confidence 68999999999994 55555533 23444443
No 49
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=31.63 E-value=48 Score=20.51 Aligned_cols=18 Identities=50% Similarity=0.855 Sum_probs=14.5
Q ss_pred cHHHHHHHHHHHHhcCCC
Q 032028 123 SYDKALKTLTEALRRFPD 140 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~~~ 140 (148)
+|+.|.+.|++++....+
T Consensus 6 ~~~~A~~~~~~~l~~~p~ 23 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPD 23 (68)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHCCC
Confidence 588999999999876554
No 50
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=30.74 E-value=91 Score=22.79 Aligned_cols=37 Identities=27% Similarity=0.253 Sum_probs=24.8
Q ss_pred EEEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeee
Q 032028 80 FKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFM 119 (148)
Q Consensus 80 YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFM 119 (148)
-|=+|+|+....|++..+..+ .--+.|+|.| --|-|.
T Consensus 48 p~~vI~L~~c~~v~~~~d~k~--~~~f~i~t~d-r~f~l~ 84 (101)
T cd01257 48 PKRVIPLESCFNINKRADAKH--RHLIALYTRD-EYFAVA 84 (101)
T ss_pred ceEEEEccceEEEeecccccc--CeEEEEEeCC-ceEEEE
Confidence 344789999999987655442 2467888866 355543
No 51
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=30.04 E-value=74 Score=17.39 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=16.0
Q ss_pred eEEEEeeceEEEecCCceeeeCCCCCeeeeE
Q 032028 49 GTLYISTQRMAFCSDYPLSHYSSSGQQEWVY 79 (148)
Q Consensus 49 G~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~ 79 (148)
|+||+.+.. .+-.++...+|+..|.+
T Consensus 7 ~~v~~~~~~-----g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTD-----GTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCC-----CEEEEEEcccCcEEEEc
Confidence 466665532 34456666788888864
No 52
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=28.27 E-value=24 Score=35.06 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=33.5
Q ss_pred CCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeEEEEEecC
Q 032028 63 DYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDG 113 (148)
Q Consensus 63 drpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~ 113 (148)
-..|+|....|... +=.|||.+|++|+..+...=--..-||||+.|-
T Consensus 595 ~~~Ls~~Ksp~~q~----~~~Ipl~nI~avEklee~sF~~knv~qVV~~dr 641 (800)
T KOG2059|consen 595 TEELSYAKSPGKQP----IYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTDR 641 (800)
T ss_pred cceeEEecCCccCc----ccceeHHHHHHHHHhhhhccCCCceEEEEecCc
Confidence 34566655444432 246999999999977666656678899999993
No 53
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=27.64 E-value=1.9e+02 Score=21.17 Aligned_cols=59 Identities=17% Similarity=0.077 Sum_probs=36.4
Q ss_pred ecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeeeeecc
Q 032028 61 CSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFIS 123 (148)
Q Consensus 61 cSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvn 123 (148)
-||.-|+|..+.+...- +-+|||..+ .|.|......--+.-.||++..+|.-.||-.=+
T Consensus 27 ~s~~~l~yf~~~~~~~p---~gli~l~~~-~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~ 85 (98)
T cd01245 27 GSRSHESLLSSPKKTKP---IGLIDLSDA-YLYPVHDSLFGRPNCFQIVERALPTVYYSCRSS 85 (98)
T ss_pred CCCceEEEEcCCCCCCc---cceeecccc-EEEEccccccCCCeEEEEecCCCCeEEEEeCCH
Confidence 35666666665554322 237899998 887765542222477899888886555655443
No 54
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=27.57 E-value=67 Score=19.10 Aligned_cols=18 Identities=39% Similarity=0.364 Sum_probs=15.4
Q ss_pred cHHHHHHHHHHHHhcCCC
Q 032028 123 SYDKALKTLTEALRRFPD 140 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~~~ 140 (148)
++|+|.+.|+++++...+
T Consensus 16 ~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 16 QPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 689999999999987654
No 55
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=26.62 E-value=2.4e+02 Score=20.08 Aligned_cols=65 Identities=25% Similarity=0.277 Sum_probs=44.5
Q ss_pred eeeeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeE--EEEEec--
Q 032028 37 ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI--HVVTRD-- 112 (148)
Q Consensus 37 ~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYI--qIvTvD-- 112 (148)
.|++ |.-.|.||.....+.|-.+.|.- +||++.|..|+=+.- ...+.|.- .|++-|
T Consensus 5 ~c~~----ka~~g~L~pl~~~l~f~~~kP~~---------------~i~~~dI~~v~feRv-~~~~~ktFDl~v~~k~~~ 64 (95)
T PF08512_consen 5 KCSY----KANEGFLYPLEKCLLFGLEKPPF---------------VIPLDDIESVEFERV-SSFSSKTFDLVVILKDYE 64 (95)
T ss_dssp EEEE----TTEEEEEEEESSEEEEECSSS-E---------------EEEGGGEEEEEEE---ESSSSSEEEEEEEETT-T
T ss_pred eEec----cccCEEEEEccceEEEecCCCeE---------------EEEhhHeeEEEEEec-ccCcceEEEEEEEEecCC
Confidence 4555 44478999999999887777764 799999999976332 35666764 456666
Q ss_pred CCeeeeeee
Q 032028 113 GYEFWFMGF 121 (148)
Q Consensus 113 ~~eFWFMGF 121 (148)
+.+..|.+-
T Consensus 65 ~~~~~fs~I 73 (95)
T PF08512_consen 65 GPPHEFSSI 73 (95)
T ss_dssp S-EEEEEEE
T ss_pred CCcEEEeeE
Confidence 677877764
No 56
>COG3506 Uncharacterized conserved protein [Function unknown]
Probab=26.34 E-value=67 Score=26.91 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=27.6
Q ss_pred ccccceecCCCCCCCCCCCeEEEEEecCCeee---eeeecc
Q 032028 86 LDQLRTVNPSANRWNPSEKYIHVVTRDGYEFW---FMGFIS 123 (148)
Q Consensus 86 L~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFW---FMGFvn 123 (148)
|...+..|+-.+-. -.+..+.|-|.-+-||| |-||++
T Consensus 3 ~s~~~WlneP~~~~-~~~~~vsv~T~~kTDFWreTfYGF~r 42 (189)
T COG3506 3 LSAGTWLNEPKSWE-VDSEKVSVTTDPKTDFWRETFYGFRR 42 (189)
T ss_pred cccceecCCCCccc-ccCceEEEEcCCCCchhhheeeeEEe
Confidence 34556666655555 45567899999999999 889986
No 57
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=25.76 E-value=61 Score=20.16 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=12.5
Q ss_pred cHHHHHHHHHHHHhcC
Q 032028 123 SYDKALKTLTEALRRF 138 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~ 138 (148)
+|++|++++++|+...
T Consensus 18 ~~~~A~~~~~~ai~~~ 33 (69)
T PF13414_consen 18 DYEEAIEYFEKAIELD 33 (69)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 5888888888888653
No 58
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=25.64 E-value=62 Score=20.70 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=12.6
Q ss_pred cHHHHHHHHHHHHhc
Q 032028 123 SYDKALKTLTEALRR 137 (148)
Q Consensus 123 nY~kA~k~L~~a~~~ 137 (148)
+|++|+.++++|+.-
T Consensus 20 ~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 20 RYDEALDYYEKALDI 34 (78)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 689999999999965
No 59
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=24.83 E-value=1.7e+02 Score=17.93 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=21.7
Q ss_pred eEEEEEecCCeeeeeeec----------cHHHHHHHHHHHHhc
Q 032028 105 YIHVVTRDGYEFWFMGFI----------SYDKALKTLTEALRR 137 (148)
Q Consensus 105 YIqIvTvD~~eFWFMGFv----------nY~kA~k~L~~a~~~ 137 (148)
|--|++.|..+.|..=|- +.+.|++++++|+..
T Consensus 2 Y~~~i~~~~~~~y~~~~pdlpg~~t~G~t~eea~~~~~eal~~ 44 (48)
T PF03681_consen 2 YPAIIEKDEDGGYVAYFPDLPGCFTQGDTLEEALENAKEALEL 44 (48)
T ss_dssp EEEEEEE-TSSSEEEEETTCCTCEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCeEEEEeCCccChhhcCCCHHHHHHHHHHHHHH
Confidence 555666655555554443 569999999999864
No 60
>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.47 E-value=1.2e+02 Score=28.36 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=38.4
Q ss_pred EEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeEEEEE
Q 032028 59 AFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVT 110 (148)
Q Consensus 59 AFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvT 110 (148)
+|-+||-|.|.+|+|+.+-..|..--++.-+..+...... .++=-|+|..
T Consensus 245 ~fd~dr~i~FiPPdGeF~Lm~Y~ls~~vkPli~~~~~~~~--~~~~ri~i~~ 294 (424)
T KOG0937|consen 245 RFDNDRTISFIPPDGEFELMRYRLSTHVKPLIWFYQLIEE--HSRSRIEVMV 294 (424)
T ss_pred hccCCceEEecCCCCceEEEEEEecCCCCCeEEeeeeeee--ccceeEEEEE
Confidence 6889999999999999999999988888888777764444 3444455543
No 61
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=23.11 E-value=85 Score=19.36 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHHHhcC
Q 032028 123 SYDKALKTLTEALRRF 138 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~ 138 (148)
+|++|.+++++++...
T Consensus 12 ~~~~A~~~~~~~l~~~ 27 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQD 27 (65)
T ss_dssp HHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHHC
Confidence 5778888888877654
No 62
>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=22.59 E-value=93 Score=13.90 Aligned_cols=14 Identities=21% Similarity=0.582 Sum_probs=9.9
Q ss_pred EEEEecCCeeeeee
Q 032028 107 HVVTRDGYEFWFMG 120 (148)
Q Consensus 107 qIvTvD~~eFWFMG 120 (148)
.+...||..+|+.-
T Consensus 5 ~~~~~~~~~~~~~~ 18 (43)
T smart00086 5 RLRRKDGSYIWVLV 18 (43)
T ss_pred EEEecCCCEEEEEE
Confidence 45677888888764
No 63
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=22.09 E-value=1e+02 Score=17.74 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=11.6
Q ss_pred cHHHHHHHHHHHHhcCC
Q 032028 123 SYDKALKTLTEALRRFP 139 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~~ 139 (148)
+|++|.+++++++....
T Consensus 49 ~~~~a~~~~~~~~~~~~ 65 (100)
T cd00189 49 KYEEALEDYEKALELDP 65 (100)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 46777888877776543
No 64
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=22.02 E-value=96 Score=22.95 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEeccccceecCCCCCCC--CCCCeEEEEEec
Q 032028 82 VVVDLDQLRTVNPSANRWN--PSEKYIHVVTRD 112 (148)
Q Consensus 82 VvIPL~~ik~Vnps~n~~~--p~eKYIqIvTvD 112 (148)
=+|+|+++.+|.+.+...+ .-+.-.+|+|.+
T Consensus 45 g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~ 77 (101)
T cd01264 45 CSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD 77 (101)
T ss_pred ceEEcccceEEeeccccccccccCcEEEEEcCC
Confidence 4688888888887654321 225677777766
No 65
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=21.36 E-value=78 Score=22.45 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHHHhc
Q 032028 123 SYDKALKTLTEALRR 137 (148)
Q Consensus 123 nY~kA~k~L~~a~~~ 137 (148)
||++|++++.+|+..
T Consensus 21 ny~eA~~lY~~ale~ 35 (75)
T cd02680 21 NAEEAIELYTEAVEL 35 (75)
T ss_pred hHHHHHHHHHHHHHH
Confidence 799999999999865
No 66
>cd00271 Chemokine_C Chemokine_C, C or lymphotactin subgroup, 1 of 4 subgroup designations of chemokines based on the arrangement of two N-terminal, conserved cysteine residues. Most of the known chemokines (cd00169) belong to either the CC (cd00272) or CXC (cd00273) subclass. The two other subclasses each have a single known member: fractalkine for the CX3C (cd00274) class and lymphotactin for the C (cd00271) class. Chemokine_Cs differ structurally since they contain only one of the two disulfide bridges that are conserved in all other chemokines and they possess a unique C-terminal extension, which is required for biological activity and thought to play a role in receptor binding. Lymphotactin, a mediator of mucosal immunity, has been found to chemoattract neutrophils and B cells through the XCR1 receptor and thought to be a factor in acute allograft rejection and inflammatory bowel disease.
Probab=20.87 E-value=95 Score=21.67 Aligned_cols=30 Identities=20% Similarity=0.504 Sum_probs=22.6
Q ss_pred eeeeeeeeecCcceeeEEEEeeceEEEecCC
Q 032028 34 KAYACYISTSNGPVIGTLYISTQRMAFCSDY 64 (148)
Q Consensus 34 ka~~CYLSTs~GPvaG~LyiSt~kvAFcSdr 64 (148)
+-..+|--|+ +|+.+++|.+-+.--+|+|-
T Consensus 22 ~~I~sY~~q~-~~~~AVIF~Tkkgr~iCadP 51 (72)
T cd00271 22 QKIKTYTIKE-GSVRAVIFITKRGLKICADP 51 (72)
T ss_pred hHccEEEECC-CCCCeEEEEecCCCEEeCCC
Confidence 3445676664 79999999998877888774
No 67
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=20.83 E-value=1.6e+02 Score=22.94 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=46.2
Q ss_pred eeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCC-CCCCCCeEEEEEecCCeeeeee
Q 032028 47 VIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANR-WNPSEKYIHVVTRDGYEFWFMG 120 (148)
Q Consensus 47 vaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~-~~p~eKYIqIvTvD~~eFWFMG 120 (148)
--|-+.|-++-.=|..||-.. .| |=||.+.|..|.-+..- .+--.+ -.|.|-.|..|-|..
T Consensus 23 ~yGkimiGDkaFEFyn~~n~~-----------dy-IQIPW~eI~~V~a~V~fkgk~I~R-F~I~Tk~~G~f~Fss 84 (118)
T PF06115_consen 23 KYGKIMIGDKAFEFYNDRNVE-----------DY-IQIPWEEIDYVIASVSFKGKWIPR-FAIFTKKNGKFTFSS 84 (118)
T ss_pred ccCeEEEcccceEeecCCChh-----------hc-EEeChhheeEEEEEEEECCCEEee-EEEEECCCCEEEEEE
Confidence 567888888888888886655 23 88999999999876662 223333 579999999999975
No 68
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=20.75 E-value=1.4e+02 Score=21.31 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=20.6
Q ss_pred EEEeccccceecCCCCCCCCC---CCeEEEEEecCC
Q 032028 82 VVVDLDQLRTVNPSANRWNPS---EKYIHVVTRDGY 114 (148)
Q Consensus 82 VvIPL~~ik~Vnps~n~~~p~---eKYIqIvTvD~~ 114 (148)
..|||+.|..|.= +.|. .=||+++..+|-
T Consensus 27 ~~ipl~~i~gV~~----~~pg~~~~G~Lrf~~~~g~ 58 (94)
T PF14472_consen 27 KTIPLSAISGVEW----KPPGGLTNGYLRFVLRGGA 58 (94)
T ss_pred EEEEHHHcceEEE----EcCCceeEEEEEEEECCcC
Confidence 6799999999942 3244 338999887743
No 69
>PF03799 FtsQ: Cell division protein FtsQ; InterPro: IPR005548 FtsQ is one of several cell division proteins. FtsQ interacts with other Fts proteins, reviewed in []. The precise function of FtsQ is unknown.; PDB: 2VH1_B 2VH2_B 2ALJ_A 1YR1_A.
Probab=20.74 E-value=2.8e+02 Score=18.80 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=29.3
Q ss_pred CeEEEEEecCCeeeeeeeccHHHHHHHHHHHHhcCC
Q 032028 104 KYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFP 139 (148)
Q Consensus 104 KYIqIvTvD~~eFWFMGFvnY~kA~k~L~~a~~~~~ 139 (148)
+.+.|.+.||.+ ..+|--++++.++.|.+++++..
T Consensus 70 ~~~~l~l~dg~~-V~lg~~~~~~kl~~~~~i~~~~~ 104 (117)
T PF03799_consen 70 GSWTLYLDDGVE-VKLGRSDLAEKLQRLVKILPQLE 104 (117)
T ss_dssp SCEEEE-SSS-E-EEEESSTHHHHHHHHHHHHHCCC
T ss_pred CeEEEEECCCcE-EEEcCcCHHHHHHHHHHHHHHHH
Confidence 339999999988 88999999999999999998874
No 70
>COG0744 MrcB Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]
Probab=20.66 E-value=44 Score=31.94 Aligned_cols=14 Identities=36% Similarity=0.971 Sum_probs=11.2
Q ss_pred EecCCeeeeeeecc
Q 032028 110 TRDGYEFWFMGFIS 123 (148)
Q Consensus 110 TvD~~eFWFMGFvn 123 (148)
|.++.|-||+||..
T Consensus 548 t~~~~D~WfvG~tp 561 (661)
T COG0744 548 TNDNRDAWFVGYTP 561 (661)
T ss_pred CCCCcceEEEeccC
Confidence 56667999999964
No 71
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=20.40 E-value=2.9e+02 Score=20.13 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=28.2
Q ss_pred EEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeeeeeccH
Q 032028 81 KVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISY 124 (148)
Q Consensus 81 KVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvnY 124 (148)
||.||-..-..|+++--.. +|..|..++..++-|+.-+..
T Consensus 2 kIAvas~dg~~V~~HFG~A----~~F~Iyev~~~~~~~ve~~~~ 41 (119)
T TIGR02663 2 KVAFATQDLENLNAHFGSA----KQFAIYDVTAEGARFVEAIQF 41 (119)
T ss_pred EEEEEcCCCCeeeccccCC----CEEEEEEEeCCEEEEEEEEec
Confidence 6667776666777665554 677888888777878777654
No 72
>PF04397 LytTR: LytTr DNA-binding domain; InterPro: IPR007492 The LytTr domain is a DNA-binding, potential winged helix-turn-helix domain (~100 residues) present in a variety of bacterial transcriptional regulators of the algR/agrA/lytR family. It is named after the lytR response regulators involved in the regulation of cell autolysis. The LytTr domain binds to a specific DNA sequence pattern in the upstream regions of target genes []. The N-terminal of the protein contains a response regulator receiver domain (IPR001789 from INTERPRO).; PDB: 3BS1_A 3D6W_B.
Probab=20.39 E-value=1.7e+02 Score=19.66 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=28.0
Q ss_pred EEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeeeeeccHHHHHHHHHHHHh
Q 032028 82 VVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALR 136 (148)
Q Consensus 82 VvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvnY~kA~k~L~~a~~ 136 (148)
+.||+++|-.+. ...+|+.|.|. +.+|.. ...++.+++.+.
T Consensus 4 ~~i~~~~I~yi~-------~~~~~~~i~~~-~~~~~~------~~tl~~~~~~l~ 44 (98)
T PF04397_consen 4 IRIPLDDILYIE-------SEGHYVRIHTK-NGSYEI------RGTLKELEEQLP 44 (98)
T ss_dssp EEEEGGGEEEEE-------CCTTEEEEEES-S-EEEE------CS-HHHHHHHS-
T ss_pred EEEeHHHeEEEE-------EECCEEEEEEC-CcEEEE------eCCHHHHhhhhc
Confidence 679999999992 36789999999 666654 455566665553
Done!