Query 032028
Match_columns 148
No_of_seqs 105 out of 134
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 96.0 0.046 1.6E-06 49.4 10.3 101 24-136 7-111 (528)
2 1lw3_A Myotubularin-related pr 95.3 0.088 3E-06 48.9 9.8 90 23-124 78-171 (657)
3 2hth_B Vacuolar protein sortin 92.4 0.12 4.1E-06 38.9 3.9 68 27-106 14-85 (140)
4 2yf0_A Myotubularin-related pr 87.5 3.7 0.00013 37.0 9.9 72 40-128 18-89 (512)
5 2cay_A VPS36 PH domain, vacuol 81.2 0.82 2.8E-05 34.6 2.4 69 27-106 26-99 (145)
6 2d9z_A Protein kinase C, NU ty 69.6 4.3 0.00015 30.8 3.7 40 78-120 46-89 (129)
7 1t77_A Lipopolysaccharide-resp 68.4 3.7 0.00013 36.2 3.5 81 35-124 6-95 (414)
8 1zyi_A Methylosome subunit pic 60.6 18 0.00061 28.2 5.7 28 36-64 32-59 (171)
9 1eaz_A Tandem PH domain contai 60.4 16 0.00054 24.2 4.8 82 57-142 33-117 (125)
10 1vcb_B Protein (elongin C); tu 57.4 4.1 0.00014 29.1 1.5 20 99-118 12-31 (112)
11 2coa_A Protein kinase C, D2 ty 56.5 8.2 0.00028 29.1 3.0 40 78-120 46-89 (125)
12 1hv2_A Elongin C, ELC1; protei 52.5 6.9 0.00024 27.1 1.9 17 102-118 2-18 (99)
13 2fnj_C Transcription elongatio 49.9 6.6 0.00022 27.0 1.5 15 104-118 1-15 (96)
14 1pfj_A TFIIH basal transcripti 44.0 47 0.0016 24.2 5.4 76 49-139 22-104 (108)
15 3vub_A CCDB; topoisomerase poi 43.6 25 0.00087 25.1 3.8 36 79-119 29-64 (101)
16 4ajy_C Transcription elongatio 43.0 9.5 0.00033 25.9 1.4 13 105-117 3-15 (97)
17 1w7p_D VPS36P, YLR417W; ESCRT- 40.9 5.7 0.0002 36.3 0.0 48 48-106 44-91 (566)
18 1v89_A Hypothetical protein KI 40.0 73 0.0025 20.5 5.5 57 82-138 49-114 (118)
19 4ag4_A Epithelial discoidin do 35.1 29 0.00099 29.5 3.5 59 30-88 250-315 (351)
20 3v7d_A Suppressor of kinetocho 34.0 17 0.00058 27.4 1.7 17 102-118 5-21 (169)
21 2dkp_A Pleckstrin homology dom 33.1 1E+02 0.0036 20.2 6.3 78 56-136 40-119 (128)
22 2adz_A Alpha-1-syntrophin; pro 32.8 40 0.0014 26.5 3.7 40 81-121 120-159 (178)
23 3s6n_M SurviVal motor neuron p 31.4 40 0.0014 20.7 2.7 18 124-141 18-35 (37)
24 2kmt_A CCDB; toxin; NMR {Vibri 30.3 33 0.0011 24.4 2.6 36 79-119 33-68 (105)
25 2yrp_A Nuclear factor of activ 29.5 31 0.0011 25.4 2.4 70 37-109 11-92 (114)
26 2kck_A TPR repeat; tetratricop 26.1 50 0.0017 19.4 2.5 15 123-137 55-69 (112)
27 1i31_A Clathrin coat assembly 24.9 37 0.0013 27.7 2.3 24 59-82 135-158 (314)
28 2jy5_A Ubiquilin-1; UBA, alter 24.4 32 0.0011 21.4 1.4 15 119-133 22-36 (52)
29 2knz_A Ubiquilin-4; cytoplasm, 23.4 34 0.0012 21.3 1.4 15 119-133 21-35 (53)
30 1upq_A PEPP1; PH domain, phosp 23.1 1.6E+02 0.0055 19.1 5.8 79 56-138 30-111 (123)
31 2bwb_A Ubiquitin-like protein 22.8 36 0.0012 20.7 1.4 15 119-133 17-31 (46)
32 2dah_A Ubiquilin-3; UBA domain 22.6 34 0.0012 21.6 1.3 14 119-132 19-32 (54)
33 1btk_A Bruton'S tyrosine kinas 22.2 1.9E+02 0.0065 21.0 5.6 33 63-95 33-66 (169)
34 3lfx_A Uncharacterized protein 22.1 1.3E+02 0.0044 24.6 5.1 66 48-121 1-73 (319)
35 3ffy_A Putative tetrapyrrole ( 21.7 37 0.0013 23.8 1.5 14 113-126 17-30 (115)
36 2yx6_A Hypothetical protein PH 21.5 2E+02 0.0067 19.5 5.4 37 81-121 2-42 (121)
37 1wr1_B Ubiquitin-like protein 21.0 38 0.0013 21.8 1.3 15 119-133 27-41 (58)
38 2kc7_A BFR218_protein; tetratr 20.5 71 0.0024 19.1 2.5 17 123-139 50-66 (99)
39 3k9i_A BH0479 protein; putativ 20.4 66 0.0023 20.3 2.4 17 123-139 42-58 (117)
40 2l6j_A TPR repeat-containing p 20.4 70 0.0024 19.1 2.4 15 123-137 19-33 (111)
41 1na3_A Designed protein CTPR2; 20.3 73 0.0025 18.3 2.4 16 123-138 24-39 (91)
42 1jyr_A Growth factor receptor- 20.2 31 0.0011 23.0 0.8 21 113-133 1-21 (96)
43 1v5p_A Pleckstrin homology dom 20.1 1.7E+02 0.0059 20.3 4.8 38 83-120 65-102 (126)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=95.96 E-value=0.046 Score=49.36 Aligned_cols=101 Identities=20% Similarity=0.156 Sum_probs=62.2
Q ss_pred cCCCccccceeeeee--eeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCC
Q 032028 24 FHKLAGEKLLKAYAC--YISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNP 101 (148)
Q Consensus 24 F~~~~~EkLlka~~C--YLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p 101 (148)
|...|||.++..-.- |+..-.|++.|+||||+.|+.|.+...= . ...+-|||..|..|.........
T Consensus 7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~-------~----~~~~~iPL~~I~~vek~~~~s~~ 75 (528)
T 1zsq_A 7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD-------P----PFVLDASLGVINRVEKIGGASSR 75 (528)
T ss_dssp CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSS-------S----CEEEEEEGGGEEEEEEECCTTCC
T ss_pred CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCC-------c----cEEEEeeccceEEEEEcCCCCcC
Confidence 567899999865211 4455568999999999999999985211 0 24578999998888763321111
Q ss_pred --CCCeEEEEEecCCeeeeeeeccHHHHHHHHHHHHh
Q 032028 102 --SEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALR 136 (148)
Q Consensus 102 --~eKYIqIvTvD~~eFWFMGFvnY~kA~k~L~~a~~ 136 (148)
....|+|..-|-. .+=.+|-.=+...+.+-++|.
T Consensus 76 ~~~~~~l~I~CKDfr-~~~f~f~~~~~~~~~v~~~L~ 111 (528)
T 1zsq_A 76 GENSYGLETVCKDIR-NLRFAHKPEGRTRRSIFENLM 111 (528)
T ss_dssp STTCSEEEEEETTTE-EEEEECCGGGCCHHHHHHHHH
T ss_pred CCCCceEEEEccCCe-EEEEEecCchHHHHHHHHHHH
Confidence 1225777777654 444456543332333334444
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=95.30 E-value=0.088 Score=48.92 Aligned_cols=90 Identities=21% Similarity=0.155 Sum_probs=57.7
Q ss_pred ccCCCccccceeeee-e-eeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCC
Q 032028 23 EFHKLAGEKLLKAYA-C-YISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWN 100 (148)
Q Consensus 23 ~F~~~~~EkLlka~~-C-YLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~ 100 (148)
-|...|||.++..-. . |+..-.|++.|+||||+.|+.|.+...= . .+.+-|||..|..|.+......
T Consensus 78 ~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~-------~----~~~~~IPL~~I~~Iekv~g~s~ 146 (657)
T 1lw3_A 78 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD-------P----PFVLDASLGVINRVEKIGGASS 146 (657)
T ss_dssp CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSS-------S----CEEEEEEGGGEEEEEEECCTTC
T ss_pred CCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCC-------c----ceEEEecccceEEEEecCCCcc
Confidence 467899999995421 1 3444458999999999999999985211 1 2456799999988876432211
Q ss_pred CC--CCeEEEEEecCCeeeeeeeccH
Q 032028 101 PS--EKYIHVVTRDGYEFWFMGFISY 124 (148)
Q Consensus 101 p~--eKYIqIvTvD~~eFWFMGFvnY 124 (148)
.. .-.|+|..-|-. .+=.+|-.=
T Consensus 147 ~g~~~~~l~I~CKDfR-~~~f~f~~~ 171 (657)
T 1lw3_A 147 RGENSYGLETVCKDIR-NLRFAHKPE 171 (657)
T ss_dssp CSTTCSEEEEEETTTE-EEEEECCGG
T ss_pred cCCCCceEEEEecCCc-EEEEEeCCc
Confidence 11 124777776654 444456533
No 3
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=92.42 E-value=0.12 Score=38.90 Aligned_cols=68 Identities=21% Similarity=0.152 Sum_probs=45.6
Q ss_pred Cccccceee-eeeeeee---cCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCC
Q 032028 27 LAGEKLLKA-YACYIST---SNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPS 102 (148)
Q Consensus 27 ~~~EkLlka-~~CYLST---s~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~ 102 (148)
.+||.++.. -.+-|+- .+.--.|+||+||.||.|-.+.. . ..-+.|||..|+.+...+..-..+
T Consensus 14 ~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~-~-----------~~s~~lpl~~v~~~e~~~~~f~~s 81 (140)
T 2hth_B 14 EINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKN-H-----------ECCMAILLSQIVFIEEQAAGIGKS 81 (140)
T ss_dssp CTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTC-C-----------SCCEEEEGGGEEEEEEECCTTSSC
T ss_pred CCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEEEecCCC-C-----------ceEEEEEhHHeeeeeeeccccccC
Confidence 455555432 2333332 24568899999999999965432 1 144889999999998877776666
Q ss_pred CCeE
Q 032028 103 EKYI 106 (148)
Q Consensus 103 eKYI 106 (148)
.|++
T Consensus 82 ~Ki~ 85 (140)
T 2hth_B 82 AKIV 85 (140)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 6765
No 4
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=87.48 E-value=3.7 Score=36.96 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=44.3
Q ss_pred eeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeee
Q 032028 40 ISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFM 119 (148)
Q Consensus 40 LSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFM 119 (148)
++.+.+|+.|+||||+.|+.|.+|.. + .+.||+..|.+|....... ...-|+|..-|-.-+=|
T Consensus 18 ~~~~~~~~~GtL~lTn~~LiF~~~~~--------~------e~wi~~~~I~~VeK~~~~~--~~~~l~I~CKDfr~~~f- 80 (512)
T 2yf0_A 18 FSTSNKSLTGTLYLTATHLLFIDSHQ--------K------ETWILHHHIASVEKLALTT--SGCPLVIQCKNFRTVHF- 80 (512)
T ss_dssp ------CCEEEEEECSSEEEEEESSS--------C------EEEEEGGGEEEEEECCCBT--TBEEEEEEETTSCEEEE-
T ss_pred cCCCCCceeEEEEEECCEEEEeCCCC--------C------ceEecccceeEEEEecCCC--CCceEEEEecCCcEEEE-
Confidence 44567999999999999999999532 1 2567888888886532211 22457888777665554
Q ss_pred eeccHHHHH
Q 032028 120 GFISYDKAL 128 (148)
Q Consensus 120 GFvnY~kA~ 128 (148)
.|-.=+.+.
T Consensus 81 ~f~~~~~~~ 89 (512)
T 2yf0_A 81 IVPRERDCH 89 (512)
T ss_dssp EESCHHHHH
T ss_pred EeCChHHHH
Confidence 465544443
No 5
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=81.21 E-value=0.82 Score=34.61 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=45.4
Q ss_pred Cccccceee---eeeeeee--cCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCC
Q 032028 27 LAGEKLLKA---YACYIST--SNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNP 101 (148)
Q Consensus 27 ~~~EkLlka---~~CYLST--s~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p 101 (148)
.|||.++.. --+|... ..+--.|+||+||.||.|-.+.+=. -.-+.+||..|+.+...+..-.+
T Consensus 26 ~~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRIIyv~~~~~~-----------~~SfslPL~~v~~~e~~~~~fg~ 94 (145)
T 2cay_A 26 REGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPT-----------QNSLGLELDDLAYVNYSSGFLTR 94 (145)
T ss_dssp CTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHH-----------HHCEEEEGGGEEEEEEECSSSSS
T ss_pred CCCCEEEEEcCCcceecCCCCCcCCCccEEEEEcCeEEEecCCCCc-----------ceEEEeEhHheeeeeEEcCcccc
Confidence 566666533 3344443 2577889999999999996543200 13378999999988887766655
Q ss_pred CCCeE
Q 032028 102 SEKYI 106 (148)
Q Consensus 102 ~eKYI 106 (148)
+-|=+
T Consensus 95 s~Ki~ 99 (145)
T 2cay_A 95 SPRLI 99 (145)
T ss_dssp SCEEE
T ss_pred CceEE
Confidence 54433
No 6
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.64 E-value=4.3 Score=30.78 Aligned_cols=40 Identities=18% Similarity=0.450 Sum_probs=29.9
Q ss_pred eEEEEEEeccccceecCCCCCCC-C-C--CCeEEEEEecCCeeeeee
Q 032028 78 VYFKVVVDLDQLRTVNPSANRWN-P-S--EKYIHVVTRDGYEFWFMG 120 (148)
Q Consensus 78 ~~YKVvIPL~~ik~Vnps~n~~~-p-~--eKYIqIvTvD~~eFWFMG 120 (148)
-|||. |||..|-.|.|..+-.. | . .-..+|+| .+-.|. +|
T Consensus 46 k~yke-IpLseIL~v~~~~~~~~~~~~~~phcFEi~T-~~~~y~-Vg 89 (129)
T 2d9z_A 46 KYYKE-IPLSEILRISSPRDFTNISQGSNPHCFEIIT-DTMVYF-VG 89 (129)
T ss_dssp SCCCE-ECTTTCCEECCTTCCCCSSSCSCCCSEEEEC-SSCEEE-EC
T ss_pred ceece-eeHHHhcccccccCccccCCCCCCceEEEEE-CCEEEE-Ec
Confidence 38887 99999999999766653 2 2 27899998 566664 54
No 7
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=68.37 E-value=3.7 Score=36.23 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=58.3
Q ss_pred eeeeeeeecCcceeeEEEEeeceEEEecCCcee-ee--------CCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCe
Q 032028 35 AYACYISTSNGPVIGTLYISTQRMAFCSDYPLS-HY--------SSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKY 105 (148)
Q Consensus 35 a~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~-~~--------~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKY 105 (148)
+..|.+-|..+-+.|+|.|++.++-|.-|..-. +. ...|.. ..++++.|+.|-...-. -.+..
T Consensus 6 ~~~~~~i~p~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~I~~i~~Rryl--l~~~a 77 (414)
T 1t77_A 6 STPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLH------GKWLFTEIRSIFSRRYL--LQNTA 77 (414)
T ss_dssp EEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTT------CEEEGGGEEEEEEEEET--TEEEE
T ss_pred EEEEEEEeeecceeeEEEEeCCEEEEEeCCCcccccccccchhccccCcc------eEecchheeeeeeeecc--Cccee
Confidence 568999999999999999999999998653211 10 012221 24789999999764443 45688
Q ss_pred EEEEEecCCeeeeeeeccH
Q 032028 106 IHVVTRDGYEFWFMGFISY 124 (148)
Q Consensus 106 IqIvTvD~~eFWFMGFvnY 124 (148)
|||.+.||.-+.| -|-+-
T Consensus 78 lEif~~~g~s~~l-~F~~~ 95 (414)
T 1t77_A 78 LEIFMANRVAVMF-NFPDP 95 (414)
T ss_dssp EEEEETTSCEEEE-ECSSH
T ss_pred EEEEEcCCcEEEE-EcCCH
Confidence 9999999988665 47653
No 8
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=60.63 E-value=18 Score=28.21 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=22.6
Q ss_pred eeeeeeecCcceeeEEEEeeceEEEecCC
Q 032028 36 YACYISTSNGPVIGTLYISTQRMAFCSDY 64 (148)
Q Consensus 36 ~~CYLSTs~GPvaG~LyiSt~kvAFcSdr 64 (148)
-+++|-.. .+-.|+|||++.||.+-|+.
T Consensus 32 v~~vl~~~-~~g~GtLyVt~~~l~W~~~~ 59 (171)
T 1zyi_A 32 TEAVLNGK-GLGTGTLYIAESRLSWLDGS 59 (171)
T ss_dssp EEEEBTTB-CCCEEEEEEETTEEEEEETT
T ss_pred EEEEECCC-ccCceEEEEEcCEEEEEcCC
Confidence 56888664 44569999999999999884
No 9
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=60.41 E-value=16 Score=24.22 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=43.6
Q ss_pred eEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCC-CCeEEEEEecCCeeeeeee--ccHHHHHHHHHH
Q 032028 57 RMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPS-EKYIHVVTRDGYEFWFMGF--ISYDKALKTLTE 133 (148)
Q Consensus 57 kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~-eKYIqIvTvD~~eFWFMGF--vnY~kA~k~L~~ 133 (148)
|...-.+..|.|+....+. .-+=+|||..+..|....+...+. +.-++|+| ++..|.|..= -..+.=+..|++
T Consensus 33 R~fvL~~~~L~yy~~~~~~---~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~-~~r~~~l~a~s~~e~~~W~~al~~ 108 (125)
T 1eaz_A 33 RYFQLDENTIGYFKSELEK---EPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVT-TSRTFYVQADSPEEMHSWIKAVSG 108 (125)
T ss_dssp EEEEECSSEEEEESSTTCS---SCSEEEEGGGCCEEEECTTHHHHTCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEcCCCCC---cceeEEEcccceEEeeccccccCCcCCEEEEEe-CCcEEEEEcCCHHHHHHHHHHHHH
Confidence 4444445555554433221 123478999988876643332222 44677775 5667776432 234445677888
Q ss_pred HHhcCCCCC
Q 032028 134 ALRRFPDTS 142 (148)
Q Consensus 134 a~~~~~~~s 142 (148)
|+...+...
T Consensus 109 ~i~~~~~~~ 117 (125)
T 1eaz_A 109 AIVAQRGPG 117 (125)
T ss_dssp HHHHTC---
T ss_pred HHHhccCCC
Confidence 887655443
No 10
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=57.43 E-value=4.1 Score=29.12 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=13.9
Q ss_pred CCCCCCeEEEEEecCCeeee
Q 032028 99 WNPSEKYIHVVTRDGYEFWF 118 (148)
Q Consensus 99 ~~p~eKYIqIvTvD~~eFWF 118 (148)
.-|..+||.++|.||++|--
T Consensus 12 ~~~~~~~v~L~SsDG~~F~V 31 (112)
T 1vcb_B 12 EGPDAMYVKLISSDGHEFIV 31 (112)
T ss_dssp -----CEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEcCCCCEEEE
Confidence 34667999999999999964
No 11
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=56.51 E-value=8.2 Score=29.05 Aligned_cols=40 Identities=25% Similarity=0.476 Sum_probs=29.7
Q ss_pred eEEEEEEeccccceecCCCCCCC--C--CCCeEEEEEecCCeeeeee
Q 032028 78 VYFKVVVDLDQLRTVNPSANRWN--P--SEKYIHVVTRDGYEFWFMG 120 (148)
Q Consensus 78 ~~YKVvIPL~~ik~Vnps~n~~~--p--~eKYIqIvTvD~~eFWFMG 120 (148)
-|||. |||..|-.|.+..+... + ..-..+|+| .+-.|. +|
T Consensus 46 ~~yke-IpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T-~~~~yy-Vg 89 (125)
T 2coa_A 46 RYYKE-IPLSEILTVESAQNFSLVPPGTNPHCFEIVT-ANATYF-VG 89 (125)
T ss_dssp SCSEE-EETTTCCEEEESCCCSSSCTTSCCEEEEEEC-SSCCCC-EE
T ss_pred ceeee-eehhHeecccccccccccCCCCCCceEEEEe-CCeEEE-Ec
Confidence 38887 99999999999776653 1 237799999 566664 44
No 12
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=52.49 E-value=6.9 Score=27.09 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=14.6
Q ss_pred CCCeEEEEEecCCeeee
Q 032028 102 SEKYIHVVTRDGYEFWF 118 (148)
Q Consensus 102 ~eKYIqIvTvD~~eFWF 118 (148)
+.+||.++|.||++|--
T Consensus 2 ~~~~v~L~SsDg~~f~V 18 (99)
T 1hv2_A 2 SQDFVTLVSKDDKEYEI 18 (99)
T ss_dssp CCSEEEEEETTTEEEEE
T ss_pred CCcEEEEEecCCCEEEE
Confidence 36899999999999964
No 13
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=49.89 E-value=6.6 Score=26.99 Aligned_cols=15 Identities=33% Similarity=0.762 Sum_probs=13.4
Q ss_pred CeEEEEEecCCeeee
Q 032028 104 KYIHVVTRDGYEFWF 118 (148)
Q Consensus 104 KYIqIvTvD~~eFWF 118 (148)
+||.++|.||++|--
T Consensus 1 ~~v~L~SsDg~~f~V 15 (96)
T 2fnj_C 1 MYVKLISSDGHEFIV 15 (96)
T ss_dssp CEEEEECTTSCEEEE
T ss_pred CeEEEEecCCCEEEe
Confidence 699999999999964
No 14
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=43.99 E-value=47 Score=24.23 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=49.4
Q ss_pred eEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeeeeeccH----
Q 032028 49 GTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISY---- 124 (148)
Q Consensus 49 G~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvnY---- 124 (148)
|+||++..+|+...+.. . .--|.++..+|+.-..| ...-+.==+||+=.|+-.|-|- |.|=
T Consensus 22 GtL~l~~d~i~W~p~~~-~-----------~~~vs~~~~~I~~qq~S--P~~k~KVqLqi~l~~~~~~~F~-Ftn~~~a~ 86 (108)
T 1pfj_A 22 GALYLMAERIAWAPEGK-D-----------RFTISHMYADIKCQKIS--PEGKAKIQLQLVLHAGDTTNFH-FSNESTAV 86 (108)
T ss_dssp CEEEEETTEEEEECSSS-S-----------SCSEEEETTTCCCEEEC--CSSSSSCEEEEECSSSCEEEEE-CCCSSCTT
T ss_pred ceEEEEcceEEEccCCC-C-----------CceEEEehhhhhcceeC--CCCCccEEEEEEEeCCCceEEE-EcCcHHHH
Confidence 99999999999876433 2 13377789999975543 3333455678888877766664 6662
Q ss_pred ---HHHHHHHHHHHhcCC
Q 032028 125 ---DKALKTLTEALRRFP 139 (148)
Q Consensus 125 ---~kA~k~L~~a~~~~~ 139 (148)
|.-=..|+.+|+..+
T Consensus 87 ~erd~VKd~L~~~l~~~k 104 (108)
T 1pfj_A 87 KERDAVKDLLQQLLPKFK 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 233345666666544
No 15
>3vub_A CCDB; topoisomerase poison; 1.40A {Escherichia coli} SCOP: b.34.6.1 PDB: 1x75_C* 1vub_A 2vub_A 3g7z_A 3hpw_A 4vub_A
Probab=43.60 E-value=25 Score=25.06 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=24.2
Q ss_pred EEEEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeee
Q 032028 79 YFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFM 119 (148)
Q Consensus 79 ~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFM 119 (148)
...|||||.......+. +..+.-=++++||.+|-.|
T Consensus 29 ~tRvVvPL~~~~~~~~~-----~~~~L~P~~~i~G~~~vl~ 64 (101)
T 3vub_A 29 GRRMVIPLASARLLSDK-----VSRELYPVVHIGDESWRMM 64 (101)
T ss_dssp TEEEEEEEEESSSSCSS-----SCTTTSCEEEETTEEEEEC
T ss_pred CceEEEECCChhHcCcc-----cCcccceEEEECCEEEEEe
Confidence 57899999877655432 2233334788999998754
No 16
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=43.01 E-value=9.5 Score=25.88 Aligned_cols=13 Identities=38% Similarity=0.912 Sum_probs=12.0
Q ss_pred eEEEEEecCCeee
Q 032028 105 YIHVVTRDGYEFW 117 (148)
Q Consensus 105 YIqIvTvD~~eFW 117 (148)
||.++|.||++|-
T Consensus 3 ~v~L~SsDg~~F~ 15 (97)
T 4ajy_C 3 YVKLISSDGHEFI 15 (97)
T ss_dssp EEEEECTTCCEEE
T ss_pred EEEEEecCCcEEE
Confidence 8999999999985
No 17
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=40.94 E-value=5.7 Score=36.27 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=0.0
Q ss_pred eeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeE
Q 032028 48 IGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI 106 (148)
Q Consensus 48 aG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYI 106 (148)
.|.+|+++.||+|--+.--. .+-|.|||+.|..+...+.-.+.+.|-+
T Consensus 44 ~G~~yLTShRiiyvD~~~p~-----------~~s~~l~L~~I~~~e~~agflksSpKI~ 91 (566)
T 1w7p_D 44 RGRIFLTSQRIIYIDDAKPT-----------QNSLGLELDDLAYVNYSSGFLTRSPRLI 91 (566)
T ss_dssp -----------------------------------------------------------
T ss_pred CceEEEEeeeEEEecCCCCc-----------ceEEEEEhHHcceeeeeeccccCCCceE
Confidence 58999999999995332111 2668899999988887666555555544
No 18
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=40.00 E-value=73 Score=20.46 Aligned_cols=57 Identities=9% Similarity=-0.004 Sum_probs=33.0
Q ss_pred EEEeccccceecCCCCCCCCCCCeEEEEEe-------cCCeeeeeeec--cHHHHHHHHHHHHhcC
Q 032028 82 VVVDLDQLRTVNPSANRWNPSEKYIHVVTR-------DGYEFWFMGFI--SYDKALKTLTEALRRF 138 (148)
Q Consensus 82 VvIPL~~ik~Vnps~n~~~p~eKYIqIvTv-------D~~eFWFMGFv--nY~kA~k~L~~a~~~~ 138 (148)
=+|||.....+....+...+....++|+|. ++..|.|..== ..+.=+..|++|+...
T Consensus 49 g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~ 114 (118)
T 1v89_A 49 GCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSG 114 (118)
T ss_dssp EEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred EEEECCCCEEEEcCcCcccCCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHccC
Confidence 467887765544333334455668889884 66677665321 2333456677777644
No 19
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}
Probab=35.12 E-value=29 Score=29.53 Aligned_cols=59 Identities=17% Similarity=0.106 Sum_probs=42.8
Q ss_pred ccceeeeeeeeeecCcceeeEEEEeeceEEEecC-------CceeeeCCCCCeeeeEEEEEEeccc
Q 032028 30 EKLLKAYACYISTSNGPVIGTLYISTQRMAFCSD-------YPLSHYSSSGQQEWVYFKVVVDLDQ 88 (148)
Q Consensus 30 EkLlka~~CYLSTs~GPvaG~LyiSt~kvAFcSd-------rpl~~~~p~g~~~~~~YKVvIPL~~ 88 (148)
+++++=.+|.|-+..=.--|+-.-|..++=|+++ .|+.|..+.....++..-|.|||++
T Consensus 250 d~~RnFt~~~ih~~n~~~~~v~~f~~~~~~Fs~~~~~~~~~~p~~~~~~~d~~~~~ar~v~i~l~~ 315 (351)
T 4ag4_A 250 DRLRAFQAMQVHCNNMHTLGARLPGGVECRFRRGPAMAWEGEPMRHNLGGNLGDPRARAVSVPLGG 315 (351)
T ss_dssp EEEEEEEEEEEEECCCGGGTBCCCSEEEEEEECSSSSSCSSSCEEEECSSCCSCCSCEEEEEEEEE
T ss_pred CcEEEEEEEEEEecccccccceeeeEEEEEEECCCCccccCCceEeecCCCcCCCccceEEEeCCC
Confidence 5677888888888777766776677777888777 4888886544434445669999984
No 20
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=33.96 E-value=17 Score=27.39 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.5
Q ss_pred CCCeEEEEEecCCeeee
Q 032028 102 SEKYIHVVTRDGYEFWF 118 (148)
Q Consensus 102 ~eKYIqIvTvD~~eFWF 118 (148)
+.+||.++|.||++|..
T Consensus 5 ~~~~i~L~SsDG~~F~V 21 (169)
T 3v7d_A 5 VTSNVVLVSGEGERFTV 21 (169)
T ss_dssp -CCEEEEECTTCCEEEE
T ss_pred CCCeEEEEeCCCCEEEe
Confidence 34899999999999975
No 21
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=33.13 E-value=1e+02 Score=20.22 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=43.1
Q ss_pred ceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeeeeec--cHHHHHHHHHH
Q 032028 56 QRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFI--SYDKALKTLTE 133 (148)
Q Consensus 56 ~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFMGFv--nY~kA~k~L~~ 133 (148)
+|.+.-.|.-|.|+....+. .-+=+|||................+--++|+|.|+..|.|..-= ..+.=++.|++
T Consensus 40 ~R~fvL~~~~L~yy~~~~~~---~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~ 116 (128)
T 2dkp_A 40 KRWFVLSDLCLFYYRDEKEE---GILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 116 (128)
T ss_dssp EEEEEEETTEEEEESSTTCC---SEEEEECGGGSEEEECCGGGCCSSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCEEEEECCCCCc---ccceEEEcCceEEEEcCCcccCCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence 45555667777776543322 12456888766433222122223345789999888888876531 23333455666
Q ss_pred HHh
Q 032028 134 ALR 136 (148)
Q Consensus 134 a~~ 136 (148)
|+.
T Consensus 117 a~~ 119 (128)
T 2dkp_A 117 AAL 119 (128)
T ss_dssp HHS
T ss_pred HHh
Confidence 654
No 22
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=32.84 E-value=40 Score=26.49 Aligned_cols=40 Identities=20% Similarity=0.373 Sum_probs=28.3
Q ss_pred EEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeeeee
Q 032028 81 KVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGF 121 (148)
Q Consensus 81 KVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFMGF 121 (148)
...|||. +..|...-...+|..+++||.+.||-.--++=+
T Consensus 120 ~~~IPLk-MayvtR~~~~tD~e~r~fEv~s~DG~~t~iLrc 159 (178)
T 2adz_A 120 AKHVSLK-MAYVSRRCTPTDPEPRYLEICAADGQDAVFLRA 159 (178)
T ss_dssp CEEEETT-TCEEEEECCSSCCSSCEEEEEETTTTEEEEECC
T ss_pred ceeecHH-HHHHHHhccCCCCCccEEEEEcCCCCeeEEEEe
Confidence 3778975 444444455566799999999999988655433
No 23
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=31.40 E-value=40 Score=20.67 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 032028 124 YDKALKTLTEALRRFPDT 141 (148)
Q Consensus 124 Y~kA~k~L~~a~~~~~~~ 141 (148)
||||+..++.|+....-+
T Consensus 18 yDKAVaSfk~alk~~~~~ 35 (37)
T 3s6n_M 18 YDKAVASFKHALKNGDIC 35 (37)
T ss_pred HHHHHHHHHHHHhcCCcC
Confidence 999999999998766543
No 24
>2kmt_A CCDB; toxin; NMR {Vibrio fischeri} PDB: 3jrz_A 3jsc_A 3ku8_C* 3kua_C*
Probab=30.32 E-value=33 Score=24.37 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=23.6
Q ss_pred EEEEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeee
Q 032028 79 YFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFM 119 (148)
Q Consensus 79 ~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFM 119 (148)
.+.|||||-......+ ++..+.-=++++||.+|.-|
T Consensus 33 ~trvVvPL~~~~~~~~-----~~~~~L~P~~~i~g~~~~l~ 68 (105)
T 2kmt_A 33 NTRLVIPLTPIELLDK-----KAPSHLCPTIHIDEGDFIML 68 (105)
T ss_dssp SCCEECCEECTTTTCS-----CCCSSSSCEEEETTEEEEEC
T ss_pred CcEEEEECCchhhccc-----cCCCCeeeEEEECCEEEEEE
Confidence 4779999977655433 12333334678899998865
No 25
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.53 E-value=31 Score=25.43 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=44.8
Q ss_pred eeeeeecCcceee--EEEEeeceEEEecCCceeee--CCCCCeeeeEEEEEEecccccee--------cCCCCCCCCCCC
Q 032028 37 ACYISTSNGPVIG--TLYISTQRMAFCSDYPLSHY--SSSGQQEWVYFKVVVDLDQLRTV--------NPSANRWNPSEK 104 (148)
Q Consensus 37 ~CYLSTs~GPvaG--~LyiSt~kvAFcSdrpl~~~--~p~g~~~~~~YKVvIPL~~ik~V--------nps~n~~~p~eK 104 (148)
.|-+|.++||+.| -|||.-+|+. -|--+.|. .++|+..|-.+=-.-+ +..+-+ -...+-..|.+=
T Consensus 11 I~k~s~~s~~v~GG~Ev~Ll~~k~~--kd~kV~F~E~~~dG~~~WE~~a~f~~-d~~~q~aivf~tPpY~~~~I~~pV~V 87 (114)
T 2yrp_A 11 VEAYSPSACSVRGGEELVLTGSNFL--PDSKVVFIERGPDGKLQWEEEATVNR-LQSNEVTLTLTVPEYSNKRVSRPVQV 87 (114)
T ss_dssp EEEEESSCEETTCCSEEEEEEESCC--TTCEEEEECBCTTSCBCCCCBCCBCT-TTCBTTEEEEECCCCSCCSCSSCEEE
T ss_pred EEEecCcccccCCCCEEEEEecccC--CCCEEEEEEECCCCCcceEEeeEECh-HHcccccEEEecCCCCCCccCCCeEE
Confidence 6889999999999 5899988885 67666665 4788877754322211 211110 012345567777
Q ss_pred eEEEE
Q 032028 105 YIHVV 109 (148)
Q Consensus 105 YIqIv 109 (148)
+|++.
T Consensus 88 ~~~l~ 92 (114)
T 2yrp_A 88 YFYVS 92 (114)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 88884
No 26
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=26.11 E-value=50 Score=19.44 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=7.8
Q ss_pred cHHHHHHHHHHHHhc
Q 032028 123 SYDKALKTLTEALRR 137 (148)
Q Consensus 123 nY~kA~k~L~~a~~~ 137 (148)
+|++|.+++++++..
T Consensus 55 ~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 55 RYEEAVDCYNYVINV 69 (112)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 455555555555543
No 27
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=24.91 E-value=37 Score=27.73 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=18.6
Q ss_pred EEecCCceeeeCCCCCeeeeEEEE
Q 032028 59 AFCSDYPLSHYSSSGQQEWVYFKV 82 (148)
Q Consensus 59 AFcSdrpl~~~~p~g~~~~~~YKV 82 (148)
.|-+||-|+|.+|+|+..-..|++
T Consensus 135 ~f~~~r~IsFiPPDG~F~Lm~Yr~ 158 (314)
T 1i31_A 135 KFDSERSISFIPPDGEFELMRYRT 158 (314)
T ss_dssp ----CCCEEECCCSEEEEEEEEEE
T ss_pred HcCCcceEEEECCCCCeEEEEEEe
Confidence 467999999999999988888887
No 28
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=24.41 E-value=32 Score=21.38 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=12.5
Q ss_pred eeeccHHHHHHHHHH
Q 032028 119 MGFISYDKALKTLTE 133 (148)
Q Consensus 119 MGFvnY~kA~k~L~~ 133 (148)
|||.+.+.|.+-|..
T Consensus 22 MGF~~~~~~~~AL~~ 36 (52)
T 2jy5_A 22 MGFLNREANLQALIA 36 (52)
T ss_dssp TTCCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999988887764
No 29
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=23.39 E-value=34 Score=21.26 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=12.2
Q ss_pred eeeccHHHHHHHHHH
Q 032028 119 MGFISYDKALKTLTE 133 (148)
Q Consensus 119 MGFvnY~kA~k~L~~ 133 (148)
|||.+.+.|.+-|+.
T Consensus 21 MGF~~~~~~~~AL~~ 35 (53)
T 2knz_A 21 MGFINREANLQALIA 35 (53)
T ss_dssp TTCCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 899888888887763
No 30
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=23.13 E-value=1.6e+02 Score=19.10 Aligned_cols=79 Identities=15% Similarity=0.006 Sum_probs=40.3
Q ss_pred ceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCC-CCCCCCCeEEEEEecCCeeeeeee--ccHHHHHHHHH
Q 032028 56 QRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSAN-RWNPSEKYIHVVTRDGYEFWFMGF--ISYDKALKTLT 132 (148)
Q Consensus 56 ~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n-~~~p~eKYIqIvTvD~~eFWFMGF--vnY~kA~k~L~ 132 (148)
+|...-.+.-|.|+....+. .-+=+|||..+. |.+..+ ......--++|+|.++..|.|..= -..+.=+..|+
T Consensus 30 kR~fvL~~~~L~yy~~~~~~---~~~g~i~l~~~~-v~~~~~~~~~~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~ 105 (123)
T 1upq_A 30 RRWFVLSGHCLFYYKDSREE---SVLGSVLLPSYN-IRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALG 105 (123)
T ss_dssp EEEEEEETTEEEEESSTTCC---SCCEEEEGGGCE-EEECCSSCTTSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCEEEEECCCCCc---ccceEEECCCCE-EEECCCCccCCCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHH
Confidence 34444455556555432221 113467787765 333332 222334567888877788887642 12333456677
Q ss_pred HHHhcC
Q 032028 133 EALRRF 138 (148)
Q Consensus 133 ~a~~~~ 138 (148)
+|+...
T Consensus 106 ~a~~~~ 111 (123)
T 1upq_A 106 RASRAE 111 (123)
T ss_dssp HHHC--
T ss_pred HHHhcc
Confidence 776543
No 31
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=22.75 E-value=36 Score=20.74 Aligned_cols=15 Identities=33% Similarity=0.840 Sum_probs=12.1
Q ss_pred eeeccHHHHHHHHHH
Q 032028 119 MGFISYDKALKTLTE 133 (148)
Q Consensus 119 MGFvnY~kA~k~L~~ 133 (148)
|||-+.+.+.+-|+.
T Consensus 17 MGF~d~~~~~~AL~~ 31 (46)
T 2bwb_A 17 MGFFDFDRNVAALRR 31 (46)
T ss_dssp TTCCCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHH
Confidence 899888888877764
No 32
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.62 E-value=34 Score=21.59 Aligned_cols=14 Identities=36% Similarity=0.745 Sum_probs=11.5
Q ss_pred eeeccHHHHHHHHH
Q 032028 119 MGFISYDKALKTLT 132 (148)
Q Consensus 119 MGFvnY~kA~k~L~ 132 (148)
|||-+.+.+.+-|+
T Consensus 19 MGF~d~~~n~~AL~ 32 (54)
T 2dah_A 19 MGFLNREANLQALI 32 (54)
T ss_dssp HTCCCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHH
Confidence 89999888777766
No 33
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=22.23 E-value=1.9e+02 Score=21.05 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=18.6
Q ss_pred CCceeeeCCCCC-eeeeEEEEEEeccccceecCC
Q 032028 63 DYPLSHYSSSGQ-QEWVYFKVVVDLDQLRTVNPS 95 (148)
Q Consensus 63 drpl~~~~p~g~-~~~~~YKVvIPL~~ik~Vnps 95 (148)
+..|.|+..+++ .....-+=.|||..+..|.+.
T Consensus 33 ~~~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve~~ 66 (169)
T 1btk_A 33 VHKLSYYEYDFERGRRGSKKGSIDVEKITCVETV 66 (169)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEEC
T ss_pred CCEEEEEecCCccCCCCceeeEEECcceEEEEec
Confidence 445555543222 233355668999988776554
No 34
>3lfx_A Uncharacterized protein; CAS1, DNAse, prokaryotic immune system, structural genomics, protein structure initiative; 2.70A {Thermotoga maritima}
Probab=22.12 E-value=1.3e+02 Score=24.64 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=41.8
Q ss_pred eeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCC-------CCCCCeEEEEEecCCeeeeee
Q 032028 48 IGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRW-------NPSEKYIHVVTRDGYEFWFMG 120 (148)
Q Consensus 48 aG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~-------~p~eKYIqIvTvD~~eFWFMG 120 (148)
|-+|||++.----..|..|.+...++ +.-||++.|..+-=..+.. .-+++=|.|+-.|.+- +|.|
T Consensus 1 M~tlyi~~~g~l~~~~~~l~v~~~~~-------~~~iPi~~i~~I~l~g~v~is~~~l~~l~~~gi~v~f~~~~G-~~~g 72 (319)
T 3lfx_A 1 MESVYLFSSGTLKRKANTICLETESG-------RKYIPVENVMDIKVFGEVDLNKRFLEFLSQKRIPIHFFNREG-YYVG 72 (319)
T ss_dssp CEEEEECSCEEEEECSSEEEEECSSC-------EEEEECTTEEEEEECSCEEEEHHHHHHHHHTTCCEEEECTTC-CEEE
T ss_pred CcEEEEccCcEEEEECCEEEEEECCe-------EEEEChhhccEEEEeCCCCCCHHHHHHHHHCCCeEEEECCCC-CEEE
Confidence 35789988776667788888765443 2579999999875433221 1234556677777655 3444
Q ss_pred e
Q 032028 121 F 121 (148)
Q Consensus 121 F 121 (148)
-
T Consensus 73 ~ 73 (319)
T 3lfx_A 73 T 73 (319)
T ss_dssp E
T ss_pred E
Confidence 4
No 35
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=21.75 E-value=37 Score=23.82 Aligned_cols=14 Identities=36% Similarity=0.683 Sum_probs=10.5
Q ss_pred CCeeeeeeeccHHH
Q 032028 113 GYEFWFMGFISYDK 126 (148)
Q Consensus 113 ~~eFWFMGFvnY~k 126 (148)
...|||.||+--++
T Consensus 17 ~~~F~F~Gflp~~~ 30 (115)
T 3ffy_A 17 NEKFCFEGFLPQKK 30 (115)
T ss_dssp CSSEEEEESCCSST
T ss_pred CCcEEEEeeCCCCc
Confidence 34699999987544
No 36
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=21.47 E-value=2e+02 Score=19.54 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=18.7
Q ss_pred EEEEeccccc----eecCCCCCCCCCCCeEEEEEecCCeeeeeee
Q 032028 81 KVVVDLDQLR----TVNPSANRWNPSEKYIHVVTRDGYEFWFMGF 121 (148)
Q Consensus 81 KVvIPL~~ik----~Vnps~n~~~p~eKYIqIvTvD~~eFWFMGF 121 (148)
||.||...=. .|+++--+. +|..|+.+|+.++-+...
T Consensus 2 kIAv~~~~~~~l~s~V~~hFG~a----~~F~I~d~~~~~~~~~e~ 42 (121)
T 2yx6_A 2 RVAIPAEDDRGIKSNVSKHFGRS----RYFVFVDIEGEDVKNVEV 42 (121)
T ss_dssp EEEEEESSSCGGGSBBCSBTTTC----CEEEEEEEETTEEEEEEE
T ss_pred EEEEEecCCCCCcCcccccccCC----CEEEEEEecCCEEEEEEc
Confidence 4555555443 444443333 455666666555555443
No 37
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=21.04 E-value=38 Score=21.80 Aligned_cols=15 Identities=33% Similarity=0.840 Sum_probs=12.2
Q ss_pred eeeccHHHHHHHHHH
Q 032028 119 MGFISYDKALKTLTE 133 (148)
Q Consensus 119 MGFvnY~kA~k~L~~ 133 (148)
|||-+.+.+.+-|+.
T Consensus 27 MGF~d~~~~~~AL~~ 41 (58)
T 1wr1_B 27 MGFFDFDRNVAALRR 41 (58)
T ss_dssp HTCCCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHH
Confidence 899888888887764
No 38
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=20.51 E-value=71 Score=19.11 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=12.3
Q ss_pred cHHHHHHHHHHHHhcCC
Q 032028 123 SYDKALKTLTEALRRFP 139 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~~ 139 (148)
+|++|.+++++++....
T Consensus 50 ~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 50 DWQKALNNYQSAIELNP 66 (99)
T ss_dssp CHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 57788888888876543
No 39
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=20.44 E-value=66 Score=20.33 Aligned_cols=17 Identities=35% Similarity=0.720 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHHhcCC
Q 032028 123 SYDKALKTLTEALRRFP 139 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~~ 139 (148)
+|++|.+++++|+....
T Consensus 42 ~~~~A~~~~~~al~~~p 58 (117)
T 3k9i_A 42 EYRKAEAVLANGVKQFP 58 (117)
T ss_dssp CHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 57888888888887644
No 40
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=20.41 E-value=70 Score=19.13 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=9.7
Q ss_pred cHHHHHHHHHHHHhc
Q 032028 123 SYDKALKTLTEALRR 137 (148)
Q Consensus 123 nY~kA~k~L~~a~~~ 137 (148)
+|++|.+++++|+..
T Consensus 19 ~~~~A~~~~~~al~~ 33 (111)
T 2l6j_A 19 LYREAVHCYDQLITA 33 (111)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 466677777766654
No 41
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=20.26 E-value=73 Score=18.34 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=11.4
Q ss_pred cHHHHHHHHHHHHhcC
Q 032028 123 SYDKALKTLTEALRRF 138 (148)
Q Consensus 123 nY~kA~k~L~~a~~~~ 138 (148)
+|++|.+++++++...
T Consensus 24 ~~~~A~~~~~~a~~~~ 39 (91)
T 1na3_A 24 DYDEAIEYYQKALELD 39 (91)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 5777777777777653
No 42
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=20.19 E-value=31 Score=23.03 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=18.4
Q ss_pred CCeeeeeeeccHHHHHHHHHH
Q 032028 113 GYEFWFMGFISYDKALKTLTE 133 (148)
Q Consensus 113 ~~eFWFMGFvnY~kA~k~L~~ 133 (148)
|.+=||-|.++.+.|-+.|++
T Consensus 1 g~~~Wyhg~isR~~Ae~lL~~ 21 (96)
T 1jyr_A 1 GSMAWFFGKIPRAKAEEMLSK 21 (96)
T ss_dssp CCCTTBCCSCCHHHHHHHHHT
T ss_pred CCcceeccCCCHHHHHHHHhc
Confidence 456799999999999999986
No 43
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=20.07 E-value=1.7e+02 Score=20.30 Aligned_cols=38 Identities=11% Similarity=0.287 Sum_probs=24.0
Q ss_pred EEeccccceecCCCCCCCCCCCeEEEEEecCCeeeeee
Q 032028 83 VVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 120 (148)
Q Consensus 83 vIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFMG 120 (148)
.|||..+..|+......++..+|.=+|......|.|+.
T Consensus 65 ~I~L~~~~~V~~~~~~~~~~~~~~F~i~t~~r~y~l~A 102 (126)
T 1v5p_A 65 SLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQA 102 (126)
T ss_dssp EEETTTCCEEEECCTTTSCSCSSEEEEECSSCEEEEEC
T ss_pred EEECCCccEEecCCcccCCCCCEEEEEECCCEEEEEEC
Confidence 57888888887765444555556545545556666654
Done!