Query 032030
Match_columns 148
No_of_seqs 146 out of 1182
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:38:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00101 ureG urease accessor 100.0 1.2E-28 2.6E-33 189.1 9.5 141 4-144 51-192 (199)
2 COG0523 Putative GTPases (G3E 99.9 6.4E-28 1.4E-32 196.9 5.1 129 11-145 55-198 (323)
3 COG0378 HypB Ni2+-binding GTPa 99.9 9.2E-27 2E-31 176.8 10.4 130 8-144 64-197 (202)
4 PRK10463 hydrogenase nickel in 99.9 1.7E-24 3.7E-29 174.1 11.6 133 7-144 146-285 (290)
5 KOG2743 Cobalamin synthesis pr 99.9 1.9E-24 4.1E-29 173.3 5.6 134 5-145 110-264 (391)
6 PF02492 cobW: CobW/HypB/UreG, 99.9 8.3E-24 1.8E-28 159.2 1.0 118 5-127 41-178 (178)
7 PRK11537 putative GTP-binding 99.9 1.2E-22 2.6E-27 165.7 7.7 131 5-143 44-199 (318)
8 TIGR02475 CobW cobalamin biosy 99.9 1.1E-22 2.3E-27 167.5 6.3 121 16-142 67-224 (341)
9 COG1703 ArgK Putative periplas 99.9 1.5E-21 3.2E-26 156.6 8.0 142 3-144 95-250 (323)
10 PF03308 ArgK: ArgK protein; 99.8 1.5E-21 3.2E-26 154.3 6.5 139 3-143 73-225 (266)
11 TIGR00073 hypB hydrogenase acc 99.8 2.9E-20 6.2E-25 142.8 10.5 135 6-145 63-204 (207)
12 PRK09435 membrane ATPase/prote 99.8 9.2E-19 2E-23 143.6 8.7 140 3-144 100-256 (332)
13 cd03112 CobW_like The function 99.6 1.6E-16 3.5E-21 117.6 2.4 86 16-101 57-158 (158)
14 TIGR00750 lao LAO/AO transport 99.5 1.2E-13 2.6E-18 111.8 8.0 140 3-144 78-234 (300)
15 COG1159 Era GTPase [General fu 98.8 3.7E-08 8.1E-13 79.5 8.7 99 42-144 52-168 (298)
16 cd04163 Era Era subfamily. Er 98.8 2.5E-08 5.4E-13 71.2 6.9 100 43-144 50-165 (168)
17 PRK15467 ethanolamine utilizat 98.7 1E-07 2.2E-12 70.2 8.1 77 63-144 63-143 (158)
18 PRK13768 GTPase; Provisional 98.7 6.5E-08 1.4E-12 76.7 7.3 102 39-144 92-243 (253)
19 cd00880 Era_like Era (E. coli 98.7 2E-07 4.3E-12 65.5 8.6 101 43-145 44-161 (163)
20 PRK00089 era GTPase Era; Revie 98.6 2.1E-07 4.5E-12 74.6 9.3 99 43-145 52-168 (292)
21 cd00881 GTP_translation_factor 98.6 8E-08 1.7E-12 70.7 6.4 101 43-145 61-184 (189)
22 TIGR02528 EutP ethanolamine ut 98.6 1.6E-07 3.4E-12 66.8 7.4 79 64-144 62-141 (142)
23 COG2403 Predicted GTPase [Gene 98.6 1.3E-07 2.8E-12 78.6 7.7 79 44-128 225-305 (449)
24 cd03114 ArgK-like The function 98.6 3.5E-08 7.7E-13 72.3 3.9 66 35-100 83-148 (148)
25 cd01895 EngA2 EngA2 subfamily. 98.6 4.4E-07 9.5E-12 65.4 9.5 104 43-146 49-173 (174)
26 PF10662 PduV-EutP: Ethanolami 98.6 4E-07 8.6E-12 66.7 9.1 94 48-144 40-142 (143)
27 PRK15494 era GTPase Era; Provi 98.6 2.6E-07 5.6E-12 76.2 8.2 100 43-145 99-213 (339)
28 cd01858 NGP_1 NGP-1. Autoanti 98.6 3.1E-07 6.8E-12 67.2 7.4 77 63-144 7-91 (157)
29 cd04160 Arfrp1 Arfrp1 subfamil 98.5 2.5E-07 5.5E-12 67.2 6.5 98 43-144 49-165 (167)
30 TIGR00436 era GTP-binding prot 98.5 2.4E-07 5.3E-12 73.7 6.4 98 43-144 47-160 (270)
31 cd01887 IF2_eIF5B IF2/eIF5B (i 98.5 6.3E-07 1.4E-11 64.9 7.1 97 43-144 49-162 (168)
32 COG1160 Predicted GTPases [Gen 98.5 5.1E-07 1.1E-11 76.5 7.4 104 42-145 224-348 (444)
33 cd01897 NOG NOG1 is a nucleola 98.5 1.2E-06 2.6E-11 63.6 8.3 98 43-146 46-166 (168)
34 cd04165 GTPBP1_like GTPBP1-lik 98.4 7.4E-07 1.6E-11 69.5 7.5 100 43-146 83-221 (224)
35 cd01849 YlqF_related_GTPase Yl 98.4 9.9E-07 2.2E-11 64.4 7.7 73 66-143 1-80 (155)
36 cd01889 SelB_euk SelB subfamil 98.4 1.3E-06 2.8E-11 65.7 7.8 98 43-144 67-182 (192)
37 PF00009 GTP_EFTU: Elongation 98.4 4.9E-07 1.1E-11 67.9 5.5 98 44-146 70-185 (188)
38 TIGR03594 GTPase_EngA ribosome 98.4 1.2E-06 2.5E-11 73.6 7.8 99 44-144 220-340 (429)
39 KOG0462 Elongation factor-type 98.4 8.4E-07 1.8E-11 76.8 6.5 98 44-144 125-231 (650)
40 cd01859 MJ1464 MJ1464. This f 98.4 1.9E-06 4.1E-11 62.7 7.5 75 64-144 12-92 (156)
41 cd04164 trmE TrmE (MnmE, ThdF, 98.4 1.5E-06 3.2E-11 61.8 6.7 96 43-147 48-156 (157)
42 PRK00093 GTP-binding protein D 98.3 2.4E-06 5.1E-11 72.1 8.7 100 43-144 220-340 (435)
43 cd04157 Arl6 Arl6 subfamily. 98.3 2.3E-06 4.9E-11 61.6 7.5 98 43-144 44-160 (162)
44 cd01898 Obg Obg subfamily. Th 98.3 4.2E-06 9.1E-11 60.8 8.9 98 45-145 49-168 (170)
45 cd01881 Obg_like The Obg-like 98.3 5.4E-06 1.2E-10 60.3 9.3 102 43-146 43-175 (176)
46 cd04158 ARD1 ARD1 subfamily. 98.3 2.3E-06 4.9E-11 63.0 7.2 98 43-144 42-157 (169)
47 cd04171 SelB SelB subfamily. 98.3 2.2E-06 4.9E-11 61.5 7.0 99 44-145 51-163 (164)
48 PRK12289 GTPase RsgA; Reviewed 98.3 4.9E-06 1.1E-10 69.1 9.8 75 64-144 89-171 (352)
49 cd04154 Arl2 Arl2 subfamily. 98.3 2.2E-06 4.9E-11 63.0 7.0 97 44-144 58-171 (173)
50 cd04151 Arl1 Arl1 subfamily. 98.3 1.6E-06 3.5E-11 62.7 6.1 98 43-144 42-156 (158)
51 cd01890 LepA LepA subfamily. 98.3 3.5E-06 7.5E-11 61.9 7.9 99 43-146 66-175 (179)
52 cd04149 Arf6 Arf6 subfamily. 98.3 2.1E-06 4.6E-11 63.4 6.4 97 44-144 53-166 (168)
53 cd00878 Arf_Arl Arf (ADP-ribos 98.3 3.5E-06 7.6E-11 60.7 7.0 99 43-145 42-157 (158)
54 cd01855 YqeH YqeH. YqeH is an 98.3 4E-06 8.7E-11 63.0 7.4 78 63-144 33-121 (190)
55 cd01856 YlqF YlqF. Proteins o 98.2 7.4E-06 1.6E-10 60.8 8.5 76 64-145 19-98 (171)
56 cd04150 Arf1_5_like Arf1-Arf5- 98.2 3.6E-06 7.7E-11 61.5 6.6 97 44-144 44-157 (159)
57 cd01888 eIF2_gamma eIF2-gamma 98.2 2.6E-06 5.7E-11 65.0 6.0 98 44-144 83-195 (203)
58 cd00882 Ras_like_GTPase Ras-li 98.2 4.1E-06 8.8E-11 57.8 6.4 98 43-144 44-156 (157)
59 cd01894 EngA1 EngA1 subfamily. 98.2 7.5E-06 1.6E-10 58.3 7.8 94 43-144 44-154 (157)
60 TIGR00157 ribosome small subun 98.2 1.5E-05 3.3E-10 62.9 10.1 75 64-144 36-119 (245)
61 cd04156 ARLTS1 ARLTS1 subfamil 98.2 4.1E-06 9E-11 60.3 6.2 97 44-144 44-158 (160)
62 PTZ00327 eukaryotic translatio 98.2 3.3E-06 7.2E-11 72.4 6.5 97 45-144 118-229 (460)
63 COG4917 EutP Ethanolamine util 98.2 1.3E-05 2.7E-10 57.8 8.4 97 45-144 38-142 (148)
64 PRK03003 GTP-binding protein D 98.2 6.8E-06 1.5E-10 70.5 7.9 78 64-145 293-379 (472)
65 PRK10512 selenocysteinyl-tRNA- 98.2 8.5E-06 1.8E-10 72.2 8.6 80 64-146 74-164 (614)
66 cd01879 FeoB Ferrous iron tran 98.2 5.8E-06 1.3E-10 59.1 6.2 98 43-145 42-154 (158)
67 PTZ00099 rab6; Provisional 98.2 5.1E-06 1.1E-10 62.3 5.9 98 43-144 28-138 (176)
68 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.1 7.6E-06 1.6E-10 60.5 6.7 98 43-144 58-172 (174)
69 smart00178 SAR Sar1p-like memb 98.1 3.1E-06 6.7E-11 63.4 4.3 98 43-144 60-181 (184)
70 PRK04213 GTP-binding protein; 98.1 1.1E-05 2.5E-10 60.6 7.4 97 45-144 53-188 (201)
71 cd01878 HflX HflX subfamily. 98.1 7.4E-06 1.6E-10 61.9 6.3 93 44-145 89-202 (204)
72 cd00879 Sar1 Sar1 subfamily. 98.1 1.2E-05 2.5E-10 59.9 7.2 77 64-144 86-187 (190)
73 PRK09866 hypothetical protein; 98.1 1.5E-05 3.2E-10 70.8 8.7 100 43-144 229-349 (741)
74 cd01863 Rab18 Rab18 subfamily. 98.1 1.6E-05 3.6E-10 57.2 7.5 99 44-145 49-159 (161)
75 PLN00223 ADP-ribosylation fact 98.1 1.1E-05 2.3E-10 60.4 6.8 78 64-145 84-175 (181)
76 PRK12299 obgE GTPase CgtA; Rev 98.1 1.9E-05 4.2E-10 65.2 8.3 99 44-146 206-326 (335)
77 smart00177 ARF ARF-like small 98.1 1.2E-05 2.6E-10 59.6 6.5 97 44-144 57-170 (175)
78 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.1 9.1E-06 2E-10 60.7 5.8 100 43-146 51-168 (183)
79 cd04128 Spg1 Spg1p. Spg1p (se 98.1 1.3E-05 2.8E-10 60.2 6.7 76 64-144 72-162 (182)
80 PRK00098 GTPase RsgA; Reviewed 98.1 3.1E-05 6.8E-10 62.7 9.3 75 64-143 80-162 (298)
81 cd04155 Arl3 Arl3 subfamily. 98.0 1.5E-05 3.2E-10 58.2 6.5 77 64-144 81-171 (173)
82 TIGR03596 GTPase_YlqF ribosome 98.0 2.1E-05 4.5E-10 63.0 7.9 76 64-145 21-100 (276)
83 PRK09518 bifunctional cytidyla 98.0 1.5E-05 3.4E-10 71.5 7.9 100 43-144 497-617 (712)
84 cd04120 Rab12 Rab12 subfamily. 98.0 1.7E-05 3.7E-10 60.8 6.8 77 64-145 72-160 (202)
85 cd00877 Ran Ran (Ras-related n 98.0 1.7E-05 3.7E-10 58.2 6.4 98 43-146 48-157 (166)
86 TIGR00475 selB selenocysteine- 98.0 2.8E-05 6.1E-10 68.5 8.7 98 44-144 50-162 (581)
87 cd00157 Rho Rho (Ras homology) 98.0 2.1E-05 4.6E-10 57.0 6.7 96 44-144 48-169 (171)
88 cd04124 RabL2 RabL2 subfamily. 98.0 2.6E-05 5.6E-10 56.8 7.2 95 43-144 48-154 (161)
89 cd04113 Rab4 Rab4 subfamily. 98.0 2.2E-05 4.9E-10 56.6 6.7 98 44-145 49-159 (161)
90 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.0 1.4E-05 3E-10 58.1 5.5 75 64-144 74-160 (166)
91 cd01865 Rab3 Rab3 subfamily. 98.0 2.9E-05 6.4E-10 56.5 7.2 80 64-147 73-162 (165)
92 TIGR03680 eif2g_arch translati 98.0 3.7E-05 7.9E-10 64.8 8.7 98 44-144 80-192 (406)
93 cd04122 Rab14 Rab14 subfamily. 98.0 1.6E-05 3.5E-10 57.9 5.7 98 44-145 51-161 (166)
94 cd04101 RabL4 RabL4 (Rab-like4 98.0 1.4E-05 3.1E-10 57.7 5.4 95 43-144 51-160 (164)
95 cd04176 Rap2 Rap2 subgroup. T 98.0 7.6E-06 1.6E-10 59.2 3.9 96 46-145 51-160 (163)
96 cd01860 Rab5_related Rab5-rela 98.0 3.2E-05 7E-10 55.7 7.0 99 44-146 50-161 (163)
97 cd04142 RRP22 RRP22 subfamily. 98.0 1.9E-05 4.1E-10 60.2 6.0 98 44-144 49-170 (198)
98 cd04110 Rab35 Rab35 subfamily. 98.0 3.1E-05 6.6E-10 58.6 7.0 78 64-145 78-164 (199)
99 cd04123 Rab21 Rab21 subfamily. 98.0 3.5E-05 7.6E-10 55.0 7.0 97 44-144 49-158 (162)
100 cd04159 Arl10_like Arl10-like 98.0 1.9E-05 4.1E-10 55.8 5.5 77 64-144 67-157 (159)
101 cd04139 RalA_RalB RalA/RalB su 98.0 2.3E-05 4.9E-10 56.2 5.9 98 44-145 48-159 (164)
102 cd04136 Rap_like Rap-like subf 98.0 2.1E-05 4.5E-10 56.6 5.7 99 44-146 49-161 (163)
103 PRK09563 rbgA GTPase YlqF; Rev 97.9 4E-05 8.7E-10 61.7 7.8 76 64-145 24-103 (287)
104 cd04127 Rab27A Rab27a subfamil 97.9 3.2E-05 7E-10 56.8 6.6 78 64-145 86-174 (180)
105 cd04126 Rab20 Rab20 subfamily. 97.9 4.9E-05 1.1E-09 59.1 7.9 99 44-144 44-186 (220)
106 TIGR03156 GTP_HflX GTP-binding 97.9 4.4E-05 9.5E-10 63.4 8.0 93 43-145 236-349 (351)
107 cd04140 ARHI_like ARHI subfami 97.9 1.5E-05 3.2E-10 58.1 4.6 95 44-144 49-161 (165)
108 cd04112 Rab26 Rab26 subfamily. 97.9 2.2E-05 4.8E-10 58.9 5.7 76 64-145 73-160 (191)
109 cd01864 Rab19 Rab19 subfamily. 97.9 4.7E-05 1E-09 55.3 7.2 98 44-144 52-162 (165)
110 COG2262 HflX GTPases [General 97.9 3.1E-05 6.7E-10 65.1 6.9 93 43-144 239-352 (411)
111 cd01854 YjeQ_engC YjeQ/EngC. 97.9 1.5E-05 3.3E-10 64.2 4.9 74 65-144 79-160 (287)
112 PRK04000 translation initiatio 97.9 2E-05 4.3E-10 66.7 5.7 98 44-144 85-197 (411)
113 PF02421 FeoB_N: Ferrous iron 97.9 6.1E-07 1.3E-11 66.6 -3.0 94 43-143 46-156 (156)
114 TIGR02729 Obg_CgtA Obg family 97.9 3.2E-05 7E-10 63.6 6.8 101 44-147 205-328 (329)
115 cd04148 RGK RGK subfamily. Th 97.9 2.1E-05 4.6E-10 60.8 5.4 98 43-146 49-161 (221)
116 TIGR03598 GTPase_YsxC ribosome 97.9 2.7E-05 5.8E-10 57.9 5.8 89 45-137 65-179 (179)
117 smart00175 RAB Rab subfamily o 97.9 4.8E-05 1E-09 54.6 6.9 96 44-144 49-158 (164)
118 cd04130 Wrch_1 Wrch-1 subfamil 97.9 5.4E-05 1.2E-09 55.6 7.2 98 44-144 48-170 (173)
119 PTZ00133 ADP-ribosylation fact 97.9 4.1E-05 8.9E-10 57.3 6.6 78 64-145 84-175 (182)
120 COG0486 ThdF Predicted GTPase 97.9 3.5E-05 7.5E-10 65.7 6.9 94 43-145 264-373 (454)
121 cd04175 Rap1 Rap1 subgroup. T 97.9 2.7E-05 5.8E-10 56.4 5.5 99 44-146 49-161 (164)
122 cd01892 Miro2 Miro2 subfamily. 97.9 5.1E-05 1.1E-09 55.9 6.9 79 63-146 76-164 (169)
123 TIGR00437 feoB ferrous iron tr 97.9 1.7E-05 3.7E-10 70.0 5.0 97 43-144 40-151 (591)
124 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 6E-05 1.3E-09 54.2 7.1 66 64-135 11-84 (141)
125 PRK01889 GTPase RsgA; Reviewed 97.9 5E-05 1.1E-09 63.1 7.5 73 65-143 113-192 (356)
126 smart00174 RHO Rho (Ras homolo 97.9 7.5E-05 1.6E-09 54.5 7.5 98 43-145 45-169 (174)
127 smart00173 RAS Ras subfamily o 97.9 3.7E-05 8E-10 55.5 5.7 97 44-144 48-158 (164)
128 cd01867 Rab8_Rab10_Rab13_like 97.9 6.7E-05 1.5E-09 54.7 7.1 77 64-144 75-161 (167)
129 cd04114 Rab30 Rab30 subfamily. 97.8 3.9E-05 8.5E-10 55.6 5.7 76 64-144 79-165 (169)
130 cd04119 RJL RJL (RabJ-Like) su 97.8 4.8E-05 1E-09 54.6 5.8 97 44-144 49-163 (168)
131 cd04137 RheB Rheb (Ras Homolog 97.8 4.7E-05 1E-09 56.0 5.7 100 43-144 48-159 (180)
132 cd01862 Rab7 Rab7 subfamily. 97.8 6.2E-05 1.3E-09 54.5 6.2 78 64-144 72-163 (172)
133 PRK12298 obgE GTPase CgtA; Rev 97.8 5.8E-05 1.2E-09 63.6 6.5 99 45-145 208-330 (390)
134 cd04147 Ras_dva Ras-dva subfam 97.8 8.4E-05 1.8E-09 56.1 6.8 97 44-144 47-159 (198)
135 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.8 2.9E-05 6.3E-10 57.5 4.2 76 64-145 73-161 (172)
136 COG0481 LepA Membrane GTPase L 97.8 4.4E-05 9.5E-10 65.6 5.6 72 68-144 103-182 (603)
137 cd04145 M_R_Ras_like M-Ras/R-R 97.8 4.3E-05 9.3E-10 55.0 4.9 99 44-146 50-162 (164)
138 cd04106 Rab23_lke Rab23-like s 97.8 6.1E-05 1.3E-09 54.1 5.7 98 43-144 50-159 (162)
139 KOG0092 GTPase Rab5/YPT51 and 97.8 6.6E-05 1.4E-09 57.4 6.0 77 64-144 77-163 (200)
140 cd04138 H_N_K_Ras_like H-Ras/N 97.8 5.8E-05 1.3E-09 53.9 5.4 78 64-146 72-160 (162)
141 PRK12288 GTPase RsgA; Reviewed 97.8 6.5E-05 1.4E-09 62.3 6.4 49 92-144 153-204 (347)
142 cd00154 Rab Rab family. Rab G 97.8 0.00014 3E-09 51.2 7.2 77 64-144 72-158 (159)
143 PF00025 Arf: ADP-ribosylation 97.8 8.2E-05 1.8E-09 55.4 6.3 77 64-144 81-172 (175)
144 cd04107 Rab32_Rab38 Rab38/Rab3 97.8 8E-05 1.7E-09 56.3 6.3 98 44-144 50-164 (201)
145 cd04125 RabA_like RabA-like su 97.8 7.1E-05 1.5E-09 55.8 5.9 96 44-145 49-159 (188)
146 smart00176 RAN Ran (Ras-relate 97.8 6.8E-05 1.5E-09 57.4 5.9 97 43-145 43-151 (200)
147 PRK05291 trmE tRNA modificatio 97.8 5.7E-05 1.2E-09 64.6 6.0 89 44-144 263-366 (449)
148 TIGR00487 IF-2 translation ini 97.8 0.00014 2.9E-09 64.3 8.5 96 45-145 136-247 (587)
149 cd04161 Arl2l1_Arl13_like Arl2 97.7 9.2E-05 2E-09 54.4 6.2 98 43-144 42-165 (167)
150 cd04132 Rho4_like Rho4-like su 97.7 8.7E-05 1.9E-09 55.0 6.1 99 44-145 49-164 (187)
151 cd04135 Tc10 TC10 subfamily. 97.7 0.00018 3.9E-09 52.4 7.7 96 44-144 48-170 (174)
152 PRK12296 obgE GTPase CgtA; Rev 97.7 9.7E-05 2.1E-09 64.1 7.2 51 92-146 287-338 (500)
153 PRK00454 engB GTP-binding prot 97.7 9E-05 1.9E-09 55.2 6.0 77 66-146 108-192 (196)
154 cd01866 Rab2 Rab2 subfamily. 97.7 0.00016 3.4E-09 52.9 7.1 97 44-145 53-163 (168)
155 cd01891 TypA_BipA TypA (tyrosi 97.7 7.5E-05 1.6E-09 56.1 5.4 95 43-139 64-173 (194)
156 cd01876 YihA_EngB The YihA (En 97.7 0.00013 2.9E-09 51.9 6.5 77 65-145 82-168 (170)
157 cd04162 Arl9_Arfrp2_like Arl9/ 97.7 6.4E-05 1.4E-09 55.1 4.9 98 43-144 43-162 (164)
158 PRK12297 obgE GTPase CgtA; Rev 97.7 0.00019 4.2E-09 61.1 8.3 97 44-146 206-325 (424)
159 cd01861 Rab6 Rab6 subfamily. 97.7 9.5E-05 2E-09 53.1 5.5 99 45-145 50-159 (161)
160 TIGR00231 small_GTP small GTP- 97.7 0.00014 3E-09 50.8 6.0 50 91-143 110-159 (161)
161 cd04109 Rab28 Rab28 subfamily. 97.7 0.00012 2.5E-09 56.1 6.1 97 44-145 50-163 (215)
162 cd01883 EF1_alpha Eukaryotic e 97.7 2.9E-05 6.4E-10 59.9 2.7 95 43-137 76-194 (219)
163 cd04134 Rho3 Rho3 subfamily. 97.7 9.1E-05 2E-09 55.5 5.3 99 43-146 47-172 (189)
164 cd01893 Miro1 Miro1 subfamily. 97.7 8.8E-05 1.9E-09 54.1 5.1 99 43-145 46-161 (166)
165 CHL00189 infB translation init 97.7 0.00017 3.8E-09 65.2 7.9 96 44-144 295-406 (742)
166 TIGR01393 lepA GTP-binding pro 97.7 0.00016 3.4E-09 64.0 7.5 97 44-145 70-177 (595)
167 cd04166 CysN_ATPS CysN_ATPS su 97.7 0.00014 3.1E-09 55.6 6.4 96 43-139 76-185 (208)
168 PRK05306 infB translation init 97.6 0.0002 4.4E-09 65.1 8.2 97 44-145 337-449 (787)
169 cd04117 Rab15 Rab15 subfamily. 97.6 0.00011 2.5E-09 53.4 5.5 76 64-145 72-159 (161)
170 KOG1489 Predicted GTP-binding 97.6 9.2E-05 2E-09 60.8 5.4 75 65-143 275-362 (366)
171 cd04121 Rab40 Rab40 subfamily. 97.6 0.00012 2.6E-09 55.5 5.7 78 63-144 77-163 (189)
172 PLN03110 Rab GTPase; Provision 97.6 0.00012 2.6E-09 56.3 5.7 76 64-145 84-171 (216)
173 cd01884 EF_Tu EF-Tu subfamily. 97.6 0.00031 6.7E-09 53.6 7.9 91 43-136 64-171 (195)
174 PLN03108 Rab family protein; P 97.6 0.00023 5.1E-09 54.4 7.2 77 64-144 78-164 (210)
175 cd04116 Rab9 Rab9 subfamily. 97.6 0.00014 3.1E-09 52.9 5.6 77 64-144 77-167 (170)
176 cd04143 Rhes_like Rhes_like su 97.6 0.00015 3.1E-09 57.4 5.9 98 44-144 48-167 (247)
177 cd00876 Ras Ras family. The R 97.6 0.00017 3.7E-09 51.3 5.8 97 44-144 47-157 (160)
178 cd04144 Ras2 Ras2 subfamily. 97.6 0.00015 3.1E-09 54.4 5.5 94 45-144 48-159 (190)
179 PRK14845 translation initiatio 97.6 0.00024 5.2E-09 66.3 7.7 99 44-144 526-669 (1049)
180 PRK05433 GTP-binding protein L 97.6 0.00031 6.6E-09 62.2 8.0 98 43-145 73-181 (600)
181 cd01873 RhoBTB RhoBTB subfamil 97.5 0.00015 3.3E-09 55.1 5.2 97 44-144 66-192 (195)
182 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.5 0.00014 3.1E-09 55.9 4.9 49 92-144 131-181 (221)
183 cd04108 Rab36_Rab34 Rab34/Rab3 97.5 0.00025 5.4E-09 52.3 6.0 77 64-146 72-163 (170)
184 PLN03118 Rab family protein; P 97.5 0.00014 3E-09 55.4 4.8 95 44-144 62-173 (211)
185 PRK11058 GTPase HflX; Provisio 97.5 0.00036 7.7E-09 59.5 7.7 92 45-144 246-358 (426)
186 cd04177 RSR1 RSR1 subgroup. R 97.5 0.00024 5.2E-09 51.8 5.8 98 44-144 49-160 (168)
187 PTZ00369 Ras-like protein; Pro 97.5 0.00013 2.9E-09 54.6 4.5 97 46-146 55-165 (189)
188 cd01870 RhoA_like RhoA-like su 97.5 0.00023 5E-09 51.9 5.7 98 43-145 48-172 (175)
189 TIGR03597 GTPase_YqeH ribosome 97.5 0.00016 3.6E-09 60.1 5.4 77 64-144 63-149 (360)
190 cd01868 Rab11_like Rab11-like. 97.5 0.00015 3.2E-09 52.5 4.5 77 64-144 75-161 (165)
191 PRK03003 GTP-binding protein D 97.5 0.00028 6E-09 60.6 6.9 94 44-145 86-196 (472)
192 cd01874 Cdc42 Cdc42 subfamily. 97.5 0.00016 3.6E-09 53.6 4.7 96 44-144 49-171 (175)
193 PRK09554 feoB ferrous iron tra 97.5 0.00019 4.1E-09 65.2 5.9 97 43-144 49-164 (772)
194 COG1160 Predicted GTPases [Gen 97.5 0.00032 6.8E-09 59.8 6.8 95 42-144 49-161 (444)
195 cd01871 Rac1_like Rac1-like su 97.5 0.00022 4.8E-09 52.9 5.2 98 44-145 49-172 (174)
196 COG0532 InfB Translation initi 97.5 0.00041 9E-09 60.0 7.4 96 44-144 55-166 (509)
197 cd04115 Rab33B_Rab33A Rab33B/R 97.5 0.00035 7.6E-09 51.1 6.0 96 44-145 51-166 (170)
198 cd04118 Rab24 Rab24 subfamily. 97.5 0.00035 7.5E-09 52.1 6.0 77 64-144 73-162 (193)
199 KOG1423 Ras-like GTPase ERA [C 97.5 0.0002 4.4E-09 58.7 4.9 102 41-144 117-267 (379)
200 COG3276 SelB Selenocysteine-sp 97.5 0.0005 1.1E-08 58.4 7.5 97 45-144 51-158 (447)
201 COG5257 GCD11 Translation init 97.5 0.00017 3.7E-09 59.5 4.6 80 64-144 109-198 (415)
202 TIGR00491 aIF-2 translation in 97.5 0.00052 1.1E-08 60.7 7.9 98 45-144 70-212 (590)
203 PRK13796 GTPase YqeH; Provisio 97.4 0.00031 6.6E-09 58.6 6.1 75 66-144 71-155 (365)
204 TIGR00483 EF-1_alpha translati 97.4 0.00039 8.5E-09 58.8 6.3 96 43-138 84-197 (426)
205 cd04111 Rab39 Rab39 subfamily. 97.4 0.00045 9.8E-09 53.0 5.9 97 44-144 52-162 (211)
206 cd04103 Centaurin_gamma Centau 97.4 0.00032 6.9E-09 51.3 4.8 78 64-144 65-155 (158)
207 TIGR02034 CysN sulfate adenyly 97.4 0.00031 6.8E-09 59.2 5.3 95 43-138 79-187 (406)
208 cd04133 Rop_like Rop subfamily 97.4 0.00029 6.3E-09 52.7 4.5 99 44-145 49-170 (176)
209 KOG1532 GTPase XAB1, interacts 97.3 0.0034 7.4E-08 51.0 10.7 108 34-143 104-259 (366)
210 PLN03071 GTP-binding nuclear p 97.3 0.00026 5.6E-09 54.7 4.2 75 64-145 85-169 (219)
211 PRK09518 bifunctional cytidyla 97.3 0.0007 1.5E-08 61.0 7.4 93 44-144 323-432 (712)
212 cd04146 RERG_RasL11_like RERG/ 97.3 0.00036 7.7E-09 50.6 4.6 97 45-145 48-161 (165)
213 PRK05124 cysN sulfate adenylyl 97.3 0.00041 9E-09 59.8 5.3 96 43-139 106-216 (474)
214 cd01875 RhoG RhoG subfamily. 97.3 0.00049 1.1E-08 51.7 5.0 76 64-144 74-173 (191)
215 PRK12736 elongation factor Tu; 97.3 0.0015 3.2E-08 54.9 8.2 97 43-143 74-196 (394)
216 cd01896 DRG The developmentall 97.3 0.00051 1.1E-08 53.7 5.1 44 92-144 179-222 (233)
217 KOG0072 GTP-binding ADP-ribosy 97.2 0.00056 1.2E-08 50.6 4.5 79 64-144 85-175 (182)
218 cd04129 Rho2 Rho2 subfamily. 97.2 0.00049 1.1E-08 51.4 4.2 98 44-144 49-169 (187)
219 PRK10218 GTP-binding protein; 97.2 0.0014 3E-08 58.2 7.6 100 43-144 67-191 (607)
220 cd04167 Snu114p Snu114p subfam 97.2 0.00033 7.2E-09 53.6 3.3 91 43-137 70-192 (213)
221 TIGR03594 GTPase_EngA ribosome 97.2 0.0011 2.4E-08 55.6 6.8 94 43-144 46-156 (429)
222 PRK12317 elongation factor 1-a 97.2 0.0012 2.5E-08 55.9 6.8 95 43-138 83-195 (425)
223 PRK00093 GTP-binding protein D 97.2 0.0014 3E-08 55.4 7.2 95 43-145 48-159 (435)
224 PRK00049 elongation factor Tu; 97.2 0.0014 3E-08 55.1 7.2 98 43-144 74-199 (396)
225 cd04178 Nucleostemin_like Nucl 97.2 0.00085 1.8E-08 50.3 5.3 51 66-120 1-59 (172)
226 PRK05506 bifunctional sulfate 97.1 0.0016 3.6E-08 57.8 7.5 95 43-138 103-211 (632)
227 COG0370 FeoB Fe2+ transport sy 97.1 0.00048 1E-08 61.2 3.9 96 43-145 49-161 (653)
228 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.1 0.00088 1.9E-08 50.3 4.7 79 64-145 76-177 (182)
229 TIGR01394 TypA_BipA GTP-bindin 97.1 0.0019 4.1E-08 57.3 7.3 100 43-144 63-187 (594)
230 TIGR00485 EF-Tu translation el 97.1 0.0018 3.9E-08 54.3 6.9 87 44-134 75-179 (394)
231 COG1162 Predicted GTPases [Gen 97.1 0.0011 2.4E-08 54.1 5.3 95 44-144 48-163 (301)
232 PRK12735 elongation factor Tu; 97.1 0.0019 4.1E-08 54.4 6.9 98 43-144 74-199 (396)
233 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.0 0.0014 3E-08 51.5 5.4 78 64-145 84-185 (232)
234 COG0218 Predicted GTPase [Gene 97.0 0.0038 8.2E-08 48.1 7.6 74 67-144 109-193 (200)
235 KOG0078 GTP-binding protein SE 97.0 0.0013 2.9E-08 50.8 5.1 75 64-144 84-170 (207)
236 PRK04004 translation initiatio 97.0 0.0017 3.6E-08 57.5 6.2 98 45-144 72-214 (586)
237 COG0536 Obg Predicted GTPase [ 97.0 0.0018 4E-08 53.6 5.8 52 92-145 278-330 (369)
238 cd04131 Rnd Rnd subfamily. Th 97.0 0.0013 2.9E-08 49.0 4.6 99 44-145 49-173 (178)
239 PTZ00141 elongation factor 1- 97.0 0.0011 2.4E-08 56.7 4.7 94 43-138 84-203 (446)
240 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 96.9 0.0017 3.8E-08 50.5 5.0 98 44-144 49-172 (222)
241 cd01882 BMS1 Bms1. Bms1 is an 96.9 0.0029 6.2E-08 49.2 6.2 69 63-134 102-182 (225)
242 PRK14974 cell division protein 96.9 0.0031 6.7E-08 52.3 6.7 93 40-140 219-322 (336)
243 KOG0088 GTPase Rab21, small G 96.9 0.001 2.2E-08 49.9 3.3 77 64-144 85-171 (218)
244 KOG1145 Mitochondrial translat 96.9 0.0042 9.2E-08 54.5 7.5 76 64-144 224-312 (683)
245 PLN00043 elongation factor 1-a 96.9 0.004 8.6E-08 53.4 7.3 92 44-137 85-202 (447)
246 KOG1424 Predicted GTP-binding 96.9 0.0017 3.7E-08 56.3 4.9 65 64-132 174-244 (562)
247 KOG0076 GTP-binding ADP-ribosy 96.8 0.00056 1.2E-08 51.8 1.3 76 64-143 92-182 (197)
248 CHL00071 tufA elongation facto 96.8 0.0043 9.2E-08 52.4 6.8 90 43-135 74-180 (409)
249 PF00071 Ras: Ras family; Int 96.7 0.0032 7E-08 45.1 4.9 98 43-144 47-157 (162)
250 COG2895 CysN GTPases - Sulfate 96.7 0.0056 1.2E-07 51.2 6.6 94 43-137 85-192 (431)
251 KOG2484 GTPase [General functi 96.6 0.0048 1E-07 52.1 5.9 57 64-124 146-210 (435)
252 PRK10416 signal recognition pa 96.6 0.0071 1.5E-07 49.7 6.8 92 41-140 194-302 (318)
253 PLN03127 Elongation factor Tu; 96.6 0.0048 1E-07 52.9 5.8 97 44-144 124-248 (447)
254 cd01899 Ygr210 Ygr210 subfamil 96.5 0.0045 9.7E-08 50.9 5.0 45 92-141 217-261 (318)
255 COG1161 Predicted GTPases [Gen 96.5 0.0076 1.7E-07 49.5 6.0 72 64-140 34-109 (322)
256 KOG0461 Selenocysteine-specifi 96.4 0.015 3.2E-07 48.9 7.4 100 42-143 68-188 (522)
257 PTZ00132 GTP-binding nuclear p 96.4 0.0077 1.7E-07 45.8 5.5 76 64-145 81-165 (215)
258 COG1163 DRG Predicted GTPase [ 96.4 0.006 1.3E-07 50.4 5.0 43 92-143 242-284 (365)
259 COG2229 Predicted GTPase [Gene 96.4 0.027 5.8E-07 42.9 8.0 76 65-144 92-174 (187)
260 TIGR00450 mnmE_trmE_thdF tRNA 96.3 0.015 3.2E-07 49.8 7.2 70 64-144 282-356 (442)
261 KOG0084 GTPase Rab1/YPT1, smal 96.3 0.0054 1.2E-07 47.2 3.9 78 64-146 81-170 (205)
262 COG5258 GTPBP1 GTPase [General 96.3 0.019 4.2E-07 48.7 7.4 78 65-144 227-335 (527)
263 PLN03126 Elongation factor Tu; 96.2 0.019 4.2E-07 49.7 7.5 88 43-134 143-248 (478)
264 KOG0098 GTPase Rab2, small G p 96.2 0.0028 6.1E-08 48.6 2.0 48 93-144 115-164 (216)
265 TIGR00064 ftsY signal recognit 96.2 0.025 5.4E-07 45.4 7.4 91 41-140 152-260 (272)
266 KOG0079 GTP-binding protein H- 95.9 0.0071 1.5E-07 45.0 2.7 75 66-144 82-165 (198)
267 KOG0394 Ras-related GTPase [Ge 95.8 0.018 3.9E-07 44.2 4.8 57 86-145 117-175 (210)
268 cd01886 EF-G Elongation factor 95.8 0.02 4.3E-07 45.9 5.3 88 43-133 63-160 (270)
269 KOG0395 Ras-related GTPase [Ge 95.8 0.018 3.9E-07 44.1 4.8 77 65-145 75-162 (196)
270 cd04168 TetM_like Tet(M)-like 95.7 0.041 8.9E-07 43.1 6.7 59 43-103 63-130 (237)
271 PRK12740 elongation factor G; 95.7 0.029 6.2E-07 50.2 6.4 60 43-104 59-127 (668)
272 COG5256 TEF1 Translation elong 95.6 0.05 1.1E-06 46.2 7.1 74 64-138 108-201 (428)
273 KOG0086 GTPase Rab4, small G p 95.4 0.024 5.1E-07 42.5 4.1 69 68-140 85-163 (214)
274 KOG0073 GTP-binding ADP-ribosy 95.4 0.025 5.3E-07 42.6 4.1 79 64-144 83-174 (185)
275 cd04104 p47_IIGP_like p47 (47- 95.3 0.038 8.2E-07 41.8 5.1 100 43-145 51-181 (197)
276 COG1217 TypA Predicted membran 95.3 0.09 2E-06 45.7 7.8 99 43-143 67-190 (603)
277 PRK00007 elongation factor G; 95.3 0.025 5.5E-07 50.9 4.6 86 43-133 74-171 (693)
278 KOG0075 GTP-binding ADP-ribosy 95.3 0.059 1.3E-06 40.1 5.7 77 64-144 88-178 (186)
279 COG0050 TufB GTPases - transla 95.2 0.071 1.5E-06 43.9 6.6 65 66-132 100-177 (394)
280 cd01885 EF2 EF2 (for archaea a 95.2 0.036 7.8E-07 43.2 4.8 58 43-102 72-138 (222)
281 PRK13351 elongation factor G; 95.2 0.059 1.3E-06 48.4 6.8 60 43-104 72-140 (687)
282 KOG0466 Translation initiation 95.2 0.031 6.8E-07 46.3 4.4 52 92-143 182-236 (466)
283 KOG0093 GTPase Rab3, small G p 95.0 0.025 5.5E-07 42.1 3.1 51 92-146 129-181 (193)
284 COG1084 Predicted GTPase [Gene 95.0 0.037 8E-07 45.8 4.3 96 44-142 215-330 (346)
285 TIGR00484 EF-G translation elo 94.9 0.054 1.2E-06 48.8 5.6 87 43-134 74-172 (689)
286 KOG0095 GTPase Rab30, small G 94.8 0.02 4.3E-07 42.7 2.1 50 92-144 115-165 (213)
287 KOG0091 GTPase Rab39, small G 94.8 0.048 1.1E-06 41.3 4.2 49 92-144 119-169 (213)
288 PRK00741 prfC peptide chain re 94.8 0.13 2.7E-06 45.2 7.4 59 43-103 78-145 (526)
289 KOG4252 GTP-binding protein [S 94.7 0.013 2.8E-07 44.9 1.0 52 87-144 124-177 (246)
290 PF03029 ATP_bind_1: Conserved 94.7 0.036 7.8E-07 43.7 3.5 99 43-144 90-233 (238)
291 PRK12739 elongation factor G; 94.6 0.057 1.2E-06 48.6 5.0 87 43-134 72-170 (691)
292 KOG0083 GTPase Rab26/Rab37, sm 94.6 0.018 3.9E-07 42.2 1.4 75 64-142 70-154 (192)
293 KOG0081 GTPase Rab27, small G 94.2 0.085 1.8E-06 39.8 4.4 49 92-144 126-177 (219)
294 KOG0070 GTP-binding ADP-ribosy 94.2 0.19 4.1E-06 38.2 6.3 78 65-144 85-174 (181)
295 PRK09602 translation-associate 94.2 0.068 1.5E-06 45.2 4.4 41 92-138 220-260 (396)
296 cd04170 EF-G_bact Elongation f 94.0 0.055 1.2E-06 42.8 3.2 91 43-139 63-164 (268)
297 KOG1144 Translation initiation 93.9 0.11 2.4E-06 47.5 5.1 99 43-143 539-682 (1064)
298 KOG0087 GTPase Rab11/YPT3, sma 93.2 0.1 2.3E-06 40.6 3.4 48 92-143 122-171 (222)
299 KOG2485 Conserved ATP/GTP bind 93.0 0.15 3.3E-06 42.0 4.3 79 63-146 45-129 (335)
300 PF08438 MMR_HSR1_C: GTPase of 92.6 0.085 1.9E-06 36.9 2.0 32 95-131 1-32 (109)
301 KOG0097 GTPase Rab14, small G 92.4 0.21 4.5E-06 37.0 3.9 47 92-140 119-165 (215)
302 KOG0071 GTP-binding ADP-ribosy 92.0 0.34 7.5E-06 35.9 4.6 75 68-144 88-174 (180)
303 KOG0460 Mitochondrial translat 90.8 0.41 8.8E-06 40.3 4.4 62 68-131 144-218 (449)
304 cd03115 SRP The signal recogni 90.4 0.56 1.2E-05 34.3 4.6 63 41-104 80-154 (173)
305 TIGR01425 SRP54_euk signal rec 90.1 1.4 3E-05 37.8 7.3 89 42-139 181-281 (429)
306 PF02606 LpxK: Tetraacyldisacc 90.0 2.7 5.8E-05 34.7 8.7 64 34-104 119-192 (326)
307 KOG0080 GTPase Rab18, small G 89.5 0.23 4.9E-06 37.6 1.8 51 92-144 120-170 (209)
308 KOG1191 Mitochondrial GTPase [ 89.1 0.63 1.4E-05 40.6 4.4 82 64-146 348-448 (531)
309 KOG0090 Signal recognition par 89.0 2.3 5.1E-05 33.5 7.1 20 124-144 216-235 (238)
310 KOG2423 Nucleolar GTPase [Gene 88.8 1.5 3.3E-05 37.7 6.4 75 65-142 214-294 (572)
311 cd04105 SR_beta Signal recogni 87.9 0.75 1.6E-05 34.9 3.8 60 43-104 47-124 (203)
312 COG3640 CooC CO dehydrogenase 87.6 0.34 7.4E-06 38.6 1.8 79 16-102 111-198 (255)
313 KOG3883 Ras family small GTPas 87.3 1.6 3.5E-05 32.8 5.0 76 64-143 84-170 (198)
314 TIGR03172 probable selenium-de 87.3 5.8 0.00013 31.3 8.5 41 34-74 88-136 (232)
315 TIGR00503 prfC peptide chain r 87.2 1.6 3.5E-05 38.3 5.9 59 43-103 79-146 (527)
316 PRK06731 flhF flagellar biosyn 87.1 2.6 5.6E-05 33.9 6.6 95 33-137 144-251 (270)
317 cd04169 RF3 RF3 subfamily. Pe 87.1 2.2 4.7E-05 34.1 6.1 60 43-104 70-138 (267)
318 PRK11889 flhF flagellar biosyn 87.0 2.8 6.2E-05 36.0 7.0 111 16-137 294-417 (436)
319 KOG3905 Dynein light intermedi 86.9 1.5 3.4E-05 36.8 5.2 52 92-143 225-285 (473)
320 TIGR00959 ffh signal recogniti 86.2 1.7 3.6E-05 37.3 5.3 91 40-139 179-281 (428)
321 KOG1490 GTP-binding protein CR 86.2 0.59 1.3E-05 41.1 2.6 92 45-139 216-332 (620)
322 KOG0458 Elongation factor 1 al 86.2 0.97 2.1E-05 40.1 3.9 74 65-138 279-372 (603)
323 PRK10867 signal recognition pa 86.0 1.8 3.9E-05 37.2 5.4 114 17-139 155-282 (433)
324 KOG1143 Predicted translation 84.9 2.4 5.1E-05 36.4 5.4 77 66-147 276-386 (591)
325 PRK07560 elongation factor EF- 84.3 2.5 5.5E-05 38.5 5.8 57 44-102 87-152 (731)
326 PLN00116 translation elongatio 84.2 1.2 2.7E-05 41.2 3.9 37 64-102 121-163 (843)
327 PTZ00416 elongation factor 2; 81.6 2 4.4E-05 39.8 4.2 57 44-102 92-157 (836)
328 COG1100 GTPase SAR1 and relate 80.9 3.1 6.7E-05 31.1 4.4 50 92-143 114-180 (219)
329 cd03110 Fer4_NifH_child This p 80.9 5.4 0.00012 29.1 5.6 74 41-119 90-170 (179)
330 cd04170 EF-G_bact Elongation f 80.5 3 6.4E-05 32.9 4.3 27 120-146 238-264 (268)
331 KOG0467 Translation elongation 79.5 1.8 4E-05 39.7 3.1 55 43-100 71-135 (887)
332 COG0552 FtsY Signal recognitio 79.5 16 0.00035 30.5 8.3 114 17-140 193-327 (340)
333 PRK00771 signal recognition pa 79.2 6.5 0.00014 33.8 6.2 88 43-139 175-274 (437)
334 PF00448 SRP54: SRP54-type pro 78.9 1.3 2.7E-05 33.8 1.7 88 41-137 81-180 (196)
335 smart00053 DYNc Dynamin, GTPas 78.6 2.6 5.5E-05 33.4 3.4 59 44-104 125-207 (240)
336 PRK12726 flagellar biosynthesi 78.1 6.1 0.00013 33.8 5.6 98 33-138 275-383 (407)
337 PF09439 SRPRB: Signal recogni 75.2 3.8 8.2E-05 31.1 3.4 59 44-104 49-127 (181)
338 KOG0780 Signal recognition par 74.9 2.6 5.6E-05 36.1 2.6 127 2-139 141-282 (483)
339 KOG0410 Predicted GTP binding 74.6 1.6 3.4E-05 36.6 1.2 90 43-144 225-337 (410)
340 KOG0781 Signal recognition par 74.5 8.7 0.00019 33.8 5.7 91 33-129 457-565 (587)
341 cd01852 AIG1 AIG1 (avrRpt2-ind 74.4 4 8.7E-05 30.4 3.3 98 43-144 48-180 (196)
342 KOG0448 Mitofusin 1 GTPase, in 73.9 8.8 0.00019 35.0 5.7 87 45-132 207-310 (749)
343 KOG4423 GTP-binding protein-li 72.9 7 0.00015 30.4 4.2 55 87-143 133-189 (229)
344 cd01850 CDC_Septin CDC/Septin. 72.9 4.3 9.3E-05 32.5 3.3 62 65-130 115-184 (276)
345 PF05783 DLIC: Dynein light in 72.1 9.6 0.00021 33.2 5.5 52 92-143 199-259 (472)
346 COG0541 Ffh Signal recognition 72.0 7.2 0.00016 33.7 4.6 96 34-139 174-281 (451)
347 PF03932 CutC: CutC family; I 71.4 8.4 0.00018 29.7 4.5 51 2-55 96-150 (201)
348 KOG0463 GTP-binding protein GP 70.9 12 0.00026 32.3 5.6 50 92-143 276-353 (641)
349 PRK12727 flagellar biosynthesi 70.6 13 0.00027 33.2 5.9 85 42-136 427-523 (559)
350 PRK12724 flagellar biosynthesi 69.7 25 0.00054 30.4 7.4 84 40-131 296-395 (432)
351 cd00550 ArsA_ATPase Oxyanion-t 68.8 14 0.0003 29.0 5.4 107 33-140 114-250 (254)
352 PF01656 CbiA: CobQ/CobB/MinD/ 67.8 1.7 3.6E-05 31.9 -0.1 68 43-113 94-170 (195)
353 KOG1954 Endocytosis/signaling 67.7 3.9 8.5E-05 35.0 2.1 63 46-114 149-234 (532)
354 PRK14722 flhF flagellar biosyn 67.2 8.9 0.00019 32.4 4.1 89 42-138 214-322 (374)
355 TIGR01007 eps_fam capsular exo 66.9 12 0.00027 27.9 4.6 62 42-103 126-194 (204)
356 PRK05703 flhF flagellar biosyn 66.7 7.6 0.00017 33.2 3.7 85 42-136 298-396 (424)
357 COG0480 FusA Translation elong 65.8 8.5 0.00018 35.2 4.0 59 44-104 76-143 (697)
358 cd01886 EF-G Elongation factor 65.2 10 0.00023 30.2 4.0 27 120-146 240-266 (270)
359 TIGR00682 lpxK tetraacyldisacc 64.2 25 0.00054 28.9 6.1 60 35-101 113-182 (311)
360 PRK14723 flhF flagellar biosyn 64.2 15 0.00033 33.9 5.3 87 42-136 262-362 (767)
361 PF06858 NOG1: Nucleolar GTP-b 63.3 33 0.00072 21.2 5.6 18 62-79 11-28 (58)
362 PF08415 NRPS: Nonribosomal pe 62.9 9.9 0.00022 23.0 2.8 28 120-147 21-53 (58)
363 KOG1673 Ras GTPases [General f 62.9 17 0.00037 27.5 4.5 72 68-144 96-182 (205)
364 PRK13505 formate--tetrahydrofo 62.5 19 0.00041 32.1 5.3 49 92-144 375-425 (557)
365 KOG0393 Ras-related small GTPa 61.9 10 0.00022 29.3 3.2 53 86-143 108-174 (198)
366 KOG0077 Vesicle coat complex C 59.1 5.5 0.00012 30.3 1.3 81 64-146 87-191 (193)
367 KOG0468 U5 snRNP-specific prot 58.6 11 0.00024 34.6 3.3 56 64-120 220-285 (971)
368 PF00919 UPF0004: Uncharacteri 58.3 45 0.00098 22.5 5.7 55 88-142 34-89 (98)
369 PF04670 Gtr1_RagA: Gtr1/RagA 57.8 20 0.00043 28.2 4.4 76 64-144 76-172 (232)
370 PF07015 VirC1: VirC1 protein; 56.1 15 0.00032 29.0 3.4 94 42-142 82-188 (231)
371 TIGR00490 aEF-2 translation el 55.2 17 0.00036 33.2 4.0 59 43-103 85-152 (720)
372 TIGR00176 mobB molybdopterin-g 55.2 15 0.00033 26.7 3.1 36 16-54 63-100 (155)
373 PRK12723 flagellar biosynthesi 54.2 24 0.00051 30.0 4.5 87 42-136 253-351 (388)
374 PF10087 DUF2325: Uncharacteri 51.5 23 0.00051 23.5 3.4 52 84-143 42-93 (97)
375 cd04169 RF3 RF3 subfamily. Pe 50.3 24 0.00052 28.0 3.8 26 120-145 237-262 (267)
376 COG1419 FlhF Flagellar GTP-bin 50.0 39 0.00084 29.0 5.1 86 43-137 281-378 (407)
377 COG0012 Predicted GTPase, prob 49.6 26 0.00055 29.7 3.9 37 92-132 209-248 (372)
378 KOG1487 GTP-binding protein DR 49.3 9.9 0.00021 31.1 1.4 42 92-142 234-275 (358)
379 PRK09417 mogA molybdenum cofac 49.0 21 0.00046 27.3 3.1 50 3-54 24-75 (193)
380 PF10678 DUF2492: Protein of u 47.8 37 0.00081 22.3 3.7 34 110-144 23-57 (78)
381 KOG1486 GTP-binding protein DR 44.7 49 0.0011 27.1 4.7 43 93-144 242-284 (364)
382 PTZ00258 GTP-binding protein; 44.1 35 0.00076 29.0 4.0 42 92-134 223-266 (390)
383 PRK11572 copper homeostasis pr 42.3 40 0.00087 26.9 3.9 51 2-55 97-151 (248)
384 TIGR03602 streptolysinS bacter 42.3 12 0.00026 22.5 0.7 9 14-22 21-29 (56)
385 PLN00023 GTP-binding protein; 41.3 31 0.00067 28.8 3.2 13 92-104 154-166 (334)
386 cd02035 ArsA ArsA ATPase funct 41.0 1.2E+02 0.0026 22.9 6.3 68 34-102 104-183 (217)
387 KOG0459 Polypeptide release fa 40.4 65 0.0014 28.0 5.0 50 92-141 220-279 (501)
388 TIGR02836 spore_IV_A stage IV 40.0 48 0.0011 29.0 4.2 53 87-145 180-234 (492)
389 KOG0082 G-protein alpha subuni 39.8 1.2E+02 0.0025 25.7 6.3 38 64-101 218-274 (354)
390 KOG4584 Uncharacterized conser 39.5 26 0.00056 29.1 2.4 36 15-56 277-312 (348)
391 PF14972 Mito_morph_reg: Mitoc 39.1 30 0.00065 25.9 2.5 21 34-55 23-43 (165)
392 COG0409 HypD Hydrogenase matur 38.6 17 0.00036 30.5 1.2 43 5-54 50-93 (364)
393 smart00275 G_alpha G protein a 38.3 1.5E+02 0.0033 24.5 6.9 20 125-144 311-330 (342)
394 cd04102 RabL3 RabL3 (Rab-like3 35.8 70 0.0015 24.2 4.2 16 87-104 129-144 (202)
395 KOG0074 GTP-binding ADP-ribosy 35.7 18 0.00039 27.0 0.9 100 42-143 49-174 (185)
396 TIGR03853 matur_matur probable 35.2 74 0.0016 20.9 3.6 34 110-144 21-55 (77)
397 PRK06995 flhF flagellar biosyn 34.9 1.4E+02 0.0031 26.2 6.4 85 42-136 333-430 (484)
398 TIGR03826 YvyF flagellar opero 34.4 18 0.00039 26.3 0.7 36 107-143 30-67 (137)
399 KOG1707 Predicted Ras related/ 34.2 16 0.00036 32.7 0.6 48 92-142 118-169 (625)
400 KOG0465 Mitochondrial elongati 34.1 2E+02 0.0042 26.5 7.1 97 43-143 103-208 (721)
401 PRK00007 elongation factor G; 34.0 55 0.0012 29.7 3.9 26 120-145 252-277 (693)
402 PF00350 Dynamin_N: Dynamin fa 33.9 27 0.00058 24.8 1.6 35 43-78 100-142 (168)
403 TIGR02016 BchX chlorophyllide 33.3 2.1E+02 0.0045 23.0 6.8 34 42-75 121-158 (296)
404 TIGR00503 prfC peptide chain r 32.8 42 0.0009 29.6 2.8 27 120-146 247-273 (527)
405 COG0290 InfC Translation initi 32.4 36 0.00079 25.8 2.1 46 2-53 12-57 (176)
406 PF06564 YhjQ: YhjQ protein; 32.3 93 0.002 24.7 4.5 75 33-109 107-183 (243)
407 TIGR02667 moaB_proteo molybden 31.9 51 0.0011 24.2 2.8 47 3-54 23-72 (163)
408 PRK14721 flhF flagellar biosyn 31.1 1.3E+02 0.0028 25.9 5.5 85 42-136 268-365 (420)
409 KOG0053 Cystathionine beta-lya 30.2 60 0.0013 27.9 3.3 35 43-77 162-202 (409)
410 PRK00090 bioD dithiobiotin syn 30.0 57 0.0012 24.6 2.9 13 42-54 102-114 (222)
411 PRK09601 GTP-binding protein Y 29.9 92 0.002 26.3 4.3 36 92-131 202-240 (364)
412 PRK06524 biotin carboxylase-li 29.8 61 0.0013 28.5 3.3 35 109-146 19-56 (493)
413 KOG1249 Predicted GTPases [Gen 29.4 43 0.00093 29.8 2.3 51 92-144 140-207 (572)
414 PF14606 Lipase_GDSL_3: GDSL-l 29.1 78 0.0017 23.9 3.4 24 107-130 78-101 (178)
415 PRK10037 cell division protein 29.0 1.3E+02 0.0029 23.1 4.9 59 42-101 116-175 (250)
416 COG3688 Predicted RNA-binding 28.7 2.2E+02 0.0048 21.4 5.7 61 66-131 49-109 (173)
417 PF01548 DEDD_Tnp_IS110: Trans 28.7 60 0.0013 22.6 2.7 66 34-112 37-105 (144)
418 TIGR00347 bioD dethiobiotin sy 28.3 73 0.0016 22.7 3.1 13 42-54 98-110 (166)
419 COG0132 BioD Dethiobiotin synt 27.4 58 0.0013 25.5 2.5 12 43-54 106-117 (223)
420 PF01729 QRPTase_C: Quinolinat 27.3 1.6E+02 0.0034 21.9 4.8 42 91-140 101-142 (169)
421 PRK10100 DNA-binding transcrip 27.3 1.3E+02 0.0027 23.1 4.4 10 134-143 112-121 (216)
422 PF03437 BtpA: BtpA family; I 27.3 1.1E+02 0.0023 24.5 4.1 50 89-142 171-220 (254)
423 PRK14338 (dimethylallyl)adenos 26.6 98 0.0021 26.6 4.0 50 88-139 55-109 (459)
424 PF00464 SHMT: Serine hydroxym 26.2 29 0.00063 29.6 0.7 61 32-93 158-225 (399)
425 KOG0447 Dynamin-like GTP bindi 26.1 64 0.0014 29.4 2.8 32 92-123 482-514 (980)
426 COG1058 CinA Predicted nucleot 26.0 60 0.0013 26.0 2.4 48 2-53 21-68 (255)
427 PRK12739 elongation factor G; 25.7 95 0.0021 28.2 3.9 26 120-145 250-275 (691)
428 cd02038 FleN-like FleN is a me 25.5 85 0.0018 22.0 3.0 35 43-77 44-79 (139)
429 PRK13600 putative ribosomal pr 25.4 1.9E+02 0.0042 19.1 4.4 42 11-52 22-64 (84)
430 TIGR00228 ruvC crossover junct 25.2 40 0.00087 25.0 1.2 43 9-53 21-67 (156)
431 PRK12374 putative dithiobiotin 25.2 81 0.0018 24.2 3.0 13 42-54 104-116 (231)
432 PRK06096 molybdenum transport 24.9 2.4E+02 0.0052 22.9 5.8 46 90-143 209-254 (284)
433 smart00852 MoCF_biosynth Proba 24.5 1E+02 0.0022 21.4 3.2 43 4-53 20-65 (135)
434 PF14331 ImcF-related_N: ImcF- 23.4 1.2E+02 0.0026 24.1 3.8 29 87-117 69-97 (266)
435 COG0621 MiaB 2-methylthioadeni 23.2 1.7E+02 0.0036 25.4 4.7 54 89-143 39-92 (437)
436 PF04239 DUF421: Protein of un 23.1 39 0.00084 22.8 0.7 45 1-55 12-58 (99)
437 PF08885 GSCFA: GSCFA family; 22.8 98 0.0021 24.7 3.1 24 107-130 152-175 (251)
438 TIGR00484 EF-G translation elo 22.6 1.1E+02 0.0025 27.6 3.8 26 120-145 251-276 (689)
439 PRK00652 lpxK tetraacyldisacch 21.7 1.3E+02 0.0027 24.9 3.6 55 38-99 137-201 (325)
440 cd00066 G-alpha G protein alph 21.4 1.2E+02 0.0025 24.7 3.4 81 64-144 184-307 (317)
441 COG2201 CheB Chemotaxis respon 21.4 2.9E+02 0.0063 23.3 5.7 37 107-145 61-97 (350)
442 PRK14328 (dimethylallyl)adenos 21.3 1.5E+02 0.0032 25.3 4.1 42 88-131 36-82 (439)
443 cd01485 E1-1_like Ubiquitin ac 20.9 1.4E+02 0.003 22.5 3.5 38 107-144 75-115 (198)
444 COG4108 PrfC Peptide chain rel 20.7 66 0.0014 28.3 1.8 23 122-144 250-272 (528)
445 PF07521 RMMBL: RNA-metabolisi 20.6 1.8E+02 0.0038 16.3 3.3 27 98-127 11-37 (43)
446 cd01844 SGNH_hydrolase_like_6 20.3 1.5E+02 0.0032 21.3 3.4 25 106-130 77-101 (177)
447 cd00886 MogA_MoaB MogA_MoaB fa 20.2 1.5E+02 0.0032 21.2 3.4 44 6-54 24-70 (152)
No 1
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.95 E-value=1.2e-28 Score=189.06 Aligned_cols=141 Identities=57% Similarity=0.898 Sum_probs=120.0
Q ss_pred CCChhhhhhhhhcCCCeeeeeccchhhchHHHHHhhhh-cCCCEEEEecCCceeeeeeccccCceEEEEEeCCCCCCccc
Q 032030 4 GALPEERIRAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR 82 (148)
Q Consensus 4 ~~~~~~~~~~~~~nGcicc~i~~dl~~~~~al~~l~~~-~~~D~IliEtsG~~~~~~~~~~~~d~~i~vvDa~~~~~~~~ 82 (148)
|.+..+++.++.+|||+||++|+|+.++..+|.++..+ .++|+|+|||+|..+.+++.|..+|..++|+|+.+++..+.
T Consensus 51 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~~~~l~~~~i~vvD~~~~~~~~~ 130 (199)
T TIGR00101 51 SALPPERILGVETGGCPHTAIREDASMNLEAVAEMEARFPPLEMVFIESGGDNLSATFSPELADLTIFVIDVAAGDKIPR 130 (199)
T ss_pred CCCCcCceehhhcCCCccceeccCHHHHHHHHHHHHhcCCCCCEEEEECCCCCcccccchhhhCcEEEEEEcchhhhhhh
Confidence 33444566666689999999999998888888777543 37999999999988777777777899999999999888755
Q ss_pred cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 83 KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 83 ~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+|+++||++++||+|+.++..++++.+.+.++.+||.++++++||++|+|+++|++++.
T Consensus 131 ~~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~ 192 (199)
T TIGR00101 131 KGGPGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIE 192 (199)
T ss_pred hhHhHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 55679999999999999999743477889999999999999999999999999999999875
No 2
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=99.94 E-value=6.4e-28 Score=196.88 Aligned_cols=129 Identities=23% Similarity=0.309 Sum_probs=102.5
Q ss_pred hhhhhcCCCeeeeeccchhhchHHHHHhhhhcCCCEEEEecCCceee----eee-c-ccc-----CceEEEEEeCCCCCC
Q 032030 11 IRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA----ANF-S-REL-----ADYIIYIIDVSGGDK 79 (148)
Q Consensus 11 ~~~~~~nGcicc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~~~~----~~~-~-~~~-----~d~~i~vvDa~~~~~ 79 (148)
+.++ +|||+|||+|+|+...+..|.+ . +.+||+|+|||||+|.| .+| . +.. .|.+|+||||.++..
T Consensus 55 ~~El-~nGCICCT~r~dl~~~~~~L~~-~-~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~ 131 (323)
T COG0523 55 VVEL-TNGCICCTVRDDLLPALERLLR-R-RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLE 131 (323)
T ss_pred EEEe-CCceEEEeccchhHHHHHHHHh-c-cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhh
Confidence 4444 5999999999999655554444 2 44699999999999865 233 2 222 355799999988754
Q ss_pred c----cccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 80 I----PRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 80 ~----~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
. ......|+++||+||+||+||+++ ++++++++.++++||.|+++.+|+. +.+..++++.-.|
T Consensus 132 ~~~~~~~~~~~Qia~AD~ivlNK~Dlv~~--~~l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll~~~~~ 198 (323)
T COG0523 132 GLDAIAELAEDQLAFADVIVLNKTDLVDA--EELEALEARLRKLNPRARIIETSYG-DVDLAELLDEGLF 198 (323)
T ss_pred hHHHHHHHHHHHHHhCcEEEEecccCCCH--HHHHHHHHHHHHhCCCCeEEEcccc-CCCHHHhhccccc
Confidence 2 234567999999999999999999 8899999999999999999999984 8898888877665
No 3
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.94 E-value=9.2e-27 Score=176.81 Aligned_cols=130 Identities=49% Similarity=0.665 Sum_probs=113.7
Q ss_pred hhhhhhhhcC-CCeeeeeccchhhchHHHHHhhhhcC-CCEEEEecCCceeeeeeccccCc-eEEEEEeCCCCCCcccc-
Q 032030 8 EERIRAVETG-GCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELAD-YIIYIIDVSGGDKIPRK- 83 (148)
Q Consensus 8 ~~~~~~~~~n-Gcicc~i~~dl~~~~~al~~l~~~~~-~D~IliEtsG~~~~~~~~~~~~d-~~i~vvDa~~~~~~~~~- 83 (148)
++|+.++.|+ || | .|.+++..++.+|....+ .|++|||+.| .++.+|+|.+.| +.|+|+|+.+|+++|.+
T Consensus 64 g~~i~~v~TG~~C-H----~da~m~~~ai~~l~~~~~~~Dll~iEs~G-NL~~~~sp~L~d~~~v~VidvteGe~~P~K~ 137 (202)
T COG0378 64 GEPIIGVETGKGC-H----LDASMNLEAIEELVLDFPDLDLLFIESVG-NLVCPFSPDLGDHLRVVVIDVTEGEDIPRKG 137 (202)
T ss_pred CCeeEEeccCCcc-C----CcHHHHHHHHHHHhhcCCcCCEEEEecCc-ceecccCcchhhceEEEEEECCCCCCCcccC
Confidence 3444456677 89 7 699999999999877654 8999999999 666677788888 78999999999999987
Q ss_pred CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 84 GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 84 ~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+|..+. ||++||||+||+++++++++.+.+..++.||.+|++++|.+||+|+++|++|+.
T Consensus 138 gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~ 197 (202)
T COG0378 138 GPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIE 197 (202)
T ss_pred CCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHH
Confidence 555555 999999999999998899999999999999999999999999999999999874
No 4
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.92 E-value=1.7e-24 Score=174.11 Aligned_cols=133 Identities=20% Similarity=0.153 Sum_probs=110.5
Q ss_pred hhhhhhhhh------cCCCeeeeeccchhhchHHHHHhhhhcCCCEEEEecCCcee-eeeeccccCceEEEEEeCCCCCC
Q 032030 7 PEERIRAVE------TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL-AANFSRELADYIIYIIDVSGGDK 79 (148)
Q Consensus 7 ~~~~~~~~~------~nGcicc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~~~-~~~~~~~~~d~~i~vvDa~~~~~ 79 (148)
|++||++.. ++||+||+.+.++ ..++.+|.. .+.|++|||++|+.. ++.|+ ...+..+++++..++++
T Consensus 146 Da~rI~~~g~pvvqi~tG~~Chl~a~mv---~~Al~~L~~-~~~d~liIEnvGnLvcPa~fd-lge~~~v~vlsV~eg~d 220 (290)
T PRK10463 146 DAARIRATGTPAIQVNTGKGCHLDAQMI---ADAAPRLPL-DDNGILFIENVGNLVCPASFD-LGEKHKVAVLSVTEGED 220 (290)
T ss_pred HHHHHHhcCCcEEEecCCCCCcCcHHHH---HHHHHHHhh-cCCcEEEEECCCCccCCCccc-hhhceeEEEEECccccc
Confidence 899998732 7899999877666 456666543 578999999999743 45552 34455679999999988
Q ss_pred ccccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 80 IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 80 ~~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+.+++.|++.||++|+||+||+++..++++.+.+.++++||.++|+++||++|+|+++|++|+.
T Consensus 221 kplKyp~~f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~ 285 (290)
T PRK10463 221 KPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLE 285 (290)
T ss_pred cchhccchhhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 87789999999999999999999864467899999999999999999999999999999999874
No 5
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=99.90 E-value=1.9e-24 Score=173.31 Aligned_cols=134 Identities=20% Similarity=0.233 Sum_probs=106.9
Q ss_pred CChhhhhhhhhcCCCeeeeeccchhhchHHHHHhhhh-cCCCEEEEecCCceee----eeeccc-------cCceEEEEE
Q 032030 5 ALPEERIRAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGDNLA----ANFSRE-------LADYIIYII 72 (148)
Q Consensus 5 ~~~~~~~~~~~~nGcicc~i~~dl~~~~~al~~l~~~-~~~D~IliEtsG~~~~----~~~~~~-------~~d~~i~vv 72 (148)
.-..|-..++. |||.|||+++++ ++++.++.++ .+||+|++||||+|.| ++|+.. -.|-+|+||
T Consensus 110 g~lyEewv~L~-NGClCCtVk~~g---vraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvv 185 (391)
T KOG2743|consen 110 GELYEEWVELR-NGCLCCTVKDNG---VRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVV 185 (391)
T ss_pred chHHHHHHHhc-CCeEEEEecchH---HHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEE
Confidence 33455666666 999999999999 5667677654 4799999999999865 445421 236679999
Q ss_pred eCCCCCCccc-c--------CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 73 DVSGGDKIPR-K--------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 73 Da~~~~~~~~-~--------~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
|+.+...... . .-.|+++||.+++||+||+++ +++.++++.++++|.-|++++|.+. ...++.+++.-
T Consensus 186 D~K~~~~~Lde~k~~g~i~EA~~QiA~AD~II~NKtDli~~--e~~~~l~q~I~~INslA~m~~Tky~-~vdlsnvLdi~ 262 (391)
T KOG2743|consen 186 DAKHILKHLDEEKPDGLINEATRQIALADRIIMNKTDLVSE--EEVKKLRQRIRSINSLAQMIETKYS-RVDLSNVLDIH 262 (391)
T ss_pred ehhhHHhhhcccCcccchHHHHHHHhhhheeeeccccccCH--HHHHHHHHHHHHhhhHHHhhhhhhc-cccHHHhcccc
Confidence 9987643211 1 123999999999999999999 9999999999999999999999975 78899999888
Q ss_pred hh
Q 032030 144 HY 145 (148)
Q Consensus 144 ~~ 145 (148)
+|
T Consensus 263 ay 264 (391)
T KOG2743|consen 263 AF 264 (391)
T ss_pred cc
Confidence 77
No 6
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=99.87 E-value=8.3e-24 Score=159.16 Aligned_cols=118 Identities=24% Similarity=0.360 Sum_probs=85.2
Q ss_pred CChhhhhhhhh------cCCCeeeeeccchhhchHHHHHhhhhc--CCCEEEEecCCceeeeee---cc-----ccCceE
Q 032030 5 ALPEERIRAVE------TGGCPHAAIREDISINLGPLEELSNLF--KADLLLCESGGDNLAANF---SR-----ELADYI 68 (148)
Q Consensus 5 ~~~~~~~~~~~------~nGcicc~i~~dl~~~~~al~~l~~~~--~~D~IliEtsG~~~~~~~---~~-----~~~d~~ 68 (148)
.+|++++.... +|||+||++++|+. .++.++...+ +||+|+||+||++.+..+ .+ -..+.+
T Consensus 41 ~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~---~~l~~l~~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~i 117 (178)
T PF02492_consen 41 NIDAELLQEDGVPVVELNNGCICCTLRDDLV---EALRRLLREYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSI 117 (178)
T ss_dssp HHHHHHHHTTT-EEEEECTTTESS-TTS-HH---HHHHHHCCCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEE
T ss_pred ccchhhhcccceEEEEecCCCcccccHHHHH---HHHHHHHHhcCCCcCEEEECCccccccchhhhccccccccccccce
Confidence 46777776532 69999999999994 4666676666 899999999998866433 11 124667
Q ss_pred EEEEeCCCCCC---ccccCCCCcceeeEEEEecCCCCCchhh-hHHHHHHHHHhcCCCCcEEE
Q 032030 69 IYIIDVSGGDK---IPRKGGPGITQADLLVINKTDLASAIGA-DLAVMERDALRMRDGGPFIF 127 (148)
Q Consensus 69 i~vvDa~~~~~---~~~~~~~qi~~ADivViNK~DL~~~~~~-~l~~~~~~i~~~np~a~vi~ 127 (148)
|+|+|+.++.. .+....+|+++||++|+||+|++++ + .++++++.+|++||.++|+.
T Consensus 118 I~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~~~--~~~i~~~~~~ir~lnp~a~Iv~ 178 (178)
T PF02492_consen 118 ITVVDATNFDELENIPELLREQIAFADVIVLNKIDLVSD--EQKIERVREMIRELNPKAPIVQ 178 (178)
T ss_dssp EEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGHHH--H--HHHHHHHHHHH-TTSEEE-
T ss_pred eEEeccccccccccchhhhhhcchhcCEEEEeccccCCh--hhHHHHHHHHHHHHCCCCEEeC
Confidence 99999977633 2334456999999999999999998 7 45999999999999999873
No 7
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=99.87 E-value=1.2e-22 Score=165.74 Aligned_cols=131 Identities=21% Similarity=0.281 Sum_probs=96.8
Q ss_pred CChhhhhhhhh------cCCCeeeeeccchhhchHHHHHhhhh-----cCCCEEEEecCCceee----eee--cccc---
Q 032030 5 ALPEERIRAVE------TGGCPHAAIREDISINLGPLEELSNL-----FKADLLLCESGGDNLA----ANF--SREL--- 64 (148)
Q Consensus 5 ~~~~~~~~~~~------~nGcicc~i~~dl~~~~~al~~l~~~-----~~~D~IliEtsG~~~~----~~~--~~~~--- 64 (148)
.||++.+.... +|||+||++++|+... +.++.++ .+||+|+|||||++.+ ..| .+.+
T Consensus 44 ~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~---l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~ 120 (318)
T PRK11537 44 SVDDQLIGDRATQIKTLTNGCICCSRSNELEDA---LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQR 120 (318)
T ss_pred cccHHHHhCcCceEEEECCCEEEEccCchHHHH---HHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhccc
Confidence 46777665311 6999999999999654 4444432 3699999999999854 233 1222
Q ss_pred --CceEEEEEeCCCCCCccc---cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 65 --ADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 65 --~d~~i~vvDa~~~~~~~~---~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
.+.+++|||+.++..... ....|+++||+||+||+|++++ . +++++.++++||.|+++.++.. ......|
T Consensus 121 ~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~--~--~~~~~~l~~lnp~a~i~~~~~~-~v~~~~l 195 (318)
T PRK11537 121 YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGE--A--EKLRERLARINARAPVYTVVHG-DIDLSLL 195 (318)
T ss_pred EEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEEEeccccCCH--H--HHHHHHHHHhCCCCEEEEeccC-CCCHHHH
Confidence 255699999987754322 2235999999999999999986 4 6899999999999999998864 5677777
Q ss_pred HHhh
Q 032030 140 LSIT 143 (148)
Q Consensus 140 ~~~~ 143 (148)
++.-
T Consensus 196 ~~~~ 199 (318)
T PRK11537 196 FNTN 199 (318)
T ss_pred hCCC
Confidence 6543
No 8
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=99.87 E-value=1.1e-22 Score=167.46 Aligned_cols=121 Identities=22% Similarity=0.290 Sum_probs=93.8
Q ss_pred cCCCeeeeeccchhhchHHHHHhhh-hcCCCEEEEecCCceee----eee-cccc-----CceEEEEEeCCCCCCc----
Q 032030 16 TGGCPHAAIREDISINLGPLEELSN-LFKADLLLCESGGDNLA----ANF-SREL-----ADYIIYIIDVSGGDKI---- 80 (148)
Q Consensus 16 ~nGcicc~i~~dl~~~~~al~~l~~-~~~~D~IliEtsG~~~~----~~~-~~~~-----~d~~i~vvDa~~~~~~---- 80 (148)
+|||+||++++|+ ..++.+|.. +.+||+|+|||||++.+ ..| .+.. .|.+++|||+.++...
T Consensus 67 ~nGCiCCs~~~dl---~~~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~ 143 (341)
T TIGR02475 67 ANGCICCTVADDF---IPTMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAA 143 (341)
T ss_pred CCCCccccCcHHH---HHHHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhcccc
Confidence 6999999999999 456666654 46899999999999864 333 2222 3556999999765210
Q ss_pred ---------------------cccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCC-CcEEEEEecCCCCHHH
Q 032030 81 ---------------------PRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDG-GPFIFAQVGWVIGIIF 138 (148)
Q Consensus 81 ---------------------~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~-a~vi~tSa~~g~gi~~ 138 (148)
......|+++||+||+||+|++++ ++++++++.++++||. ++++.++.. ....+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~--~~l~~~~~~l~~~~~~~a~i~~~~~~-~v~~~~ 220 (341)
T TIGR02475 144 DPDALDAQRAADDNLDHETPLEELFEDQLACADLVILNKADLLDA--AGLARVRAEIAAELPRAVKIVEASHG-EVDARV 220 (341)
T ss_pred chhhhhhhccccccccccchHHHHHHHHHHhCCEEEEeccccCCH--HHHHHHHHHHHHhCCCCCEEEEcccC-CCCHHH
Confidence 001135999999999999999999 9999999999998875 589999864 688888
Q ss_pred HHHh
Q 032030 139 TLSI 142 (148)
Q Consensus 139 l~~~ 142 (148)
|++.
T Consensus 221 ll~~ 224 (341)
T TIGR02475 221 LLGL 224 (341)
T ss_pred HhCC
Confidence 8775
No 9
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.85 E-value=1.5e-21 Score=156.65 Aligned_cols=142 Identities=20% Similarity=0.119 Sum_probs=111.7
Q ss_pred CCCChhhhhhhhhcCCCeeeeeccchhh--------chHHHHHhhhhcCCCEEEEecCCceeeeeeccccCceEEEEEeC
Q 032030 3 NGALPEERIRAVETGGCPHAAIREDISI--------NLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDV 74 (148)
Q Consensus 3 ~~~~~~~~~~~~~~nGcicc~i~~dl~~--------~~~al~~l~~~~~~D~IliEtsG~~~~~~~~~~~~d~~i~vvDa 74 (148)
.|+|+|+||||.+.+--+..++|+..++ .......+++..+||+|+|||||+++...-....+|.+++|+-+
T Consensus 95 GGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~p 174 (323)
T COG1703 95 GGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIP 174 (323)
T ss_pred CccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecC
Confidence 5999999999999888889999876654 23445567788899999999999998754434688999999999
Q ss_pred CCCCCccccCCCCcceeeEEEEecCCCCCchh--hhHHHHHHHH----HhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 75 SGGDKIPRKGGPGITQADLLVINKTDLASAIG--ADLAVMERDA----LRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 75 ~~~~~~~~~~~~qi~~ADivViNK~DL~~~~~--~~l~~~~~~i----~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..|+++|..+.+.+++||++||||.|+.+... .++....+.. ++.-+..||+.|||.+|+|+++||+.+.
T Consensus 175 g~GD~~Q~iK~GimEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~ 250 (323)
T COG1703 175 GAGDDLQGIKAGIMEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIE 250 (323)
T ss_pred CCCcHHHHHHhhhhhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHH
Confidence 99999999889999999999999999765411 1222222222 2223567999999999999999998763
No 10
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.85 E-value=1.5e-21 Score=154.33 Aligned_cols=139 Identities=22% Similarity=0.159 Sum_probs=99.4
Q ss_pred CCCChhhhhhhhhcCCCeeeeeccchhhc--------hHHHHHhhhhcCCCEEEEecCCceeeeeeccccCceEEEEEeC
Q 032030 3 NGALPEERIRAVETGGCPHAAIREDISIN--------LGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDV 74 (148)
Q Consensus 3 ~~~~~~~~~~~~~~nGcicc~i~~dl~~~--------~~al~~l~~~~~~D~IliEtsG~~~~~~~~~~~~d~~i~vvDa 74 (148)
.|+|+||||||.+...-+..+||+..++. ......+++..+||+|||||+|+++.+.-....+|.+++|+-+
T Consensus 73 GGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~P 152 (266)
T PF03308_consen 73 GGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVP 152 (266)
T ss_dssp ---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEES
T ss_pred CCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecC
Confidence 58999999999988888999999877652 3344557777899999999999998644334689999999999
Q ss_pred CCCCCccccCCCCcceeeEEEEecCCCCCchhhhH-HHHHHHHHhcC-----CCCcEEEEEecCCCCHHHHHHhh
Q 032030 75 SGGDKIPRKGGPGITQADLLVINKTDLASAIGADL-AVMERDALRMR-----DGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 75 ~~~~~~~~~~~~qi~~ADivViNK~DL~~~~~~~l-~~~~~~i~~~n-----p~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
..|+++|..+.+.++.||++|+||.|+... +.. ..++..++-.. +..||+.|||.+|.|+++|++.+
T Consensus 153 g~GD~iQ~~KaGimEiaDi~vVNKaD~~gA--~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i 225 (266)
T PF03308_consen 153 GLGDEIQAIKAGIMEIADIFVVNKADRPGA--DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAI 225 (266)
T ss_dssp STCCCCCTB-TTHHHH-SEEEEE--SHHHH--HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHH
T ss_pred CCccHHHHHhhhhhhhccEEEEeCCChHHH--HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHH
Confidence 999999999999999999999999996554 322 23444443222 34699999999999999999875
No 11
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.83 E-value=2.9e-20 Score=142.76 Aligned_cols=135 Identities=28% Similarity=0.315 Sum_probs=99.6
Q ss_pred Chhhhhhhhh------cCCCeeeeeccchhhchHHHHHhhhhcCCCEEEEecCCcee-eeeeccccCceEEEEEeCCCCC
Q 032030 6 LPEERIRAVE------TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL-AANFSRELADYIIYIIDVSGGD 78 (148)
Q Consensus 6 ~~~~~~~~~~------~nGcicc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~~~-~~~~~~~~~d~~i~vvDa~~~~ 78 (148)
+|.++++... ++||+||....++ ..++.++.. .++|+|+|||||... +..+ ....+..++|+|+.+++
T Consensus 63 ~D~~~~~~~~~~~~~l~~gcic~~~~~~~---~~~l~~~~~-~~~d~IiIEt~G~l~~~~~~-~~~~~~~i~Vvd~~~~d 137 (207)
T TIGR00073 63 FDAERLRKYGAPAIQINTGKECHLDAHMV---AHALEDLPL-DDIDLLFIENVGNLVCPADF-DLGEHMRVVLLSVTEGD 137 (207)
T ss_pred ccHHHHHHcCCcEEEEcCCCcccCChHHH---HHHHHHhcc-CCCCEEEEecCCCcCCCccc-ccccCeEEEEEecCccc
Confidence 6777776422 7999999654443 244444432 378999999999432 2222 13345668899998876
Q ss_pred CccccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 79 KIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 79 ~~~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
..+..++.++..|+++++||+|+.+....+++++.+.+++.+|.+|++++||++|.|++++++++.-
T Consensus 138 ~~~~~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~ 204 (207)
T TIGR00073 138 DKPLKYPGMFKEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEG 204 (207)
T ss_pred chhhhhHhHHhhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 6544455677888999999999987422346778888898999999999999999999999998753
No 12
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.77 E-value=9.2e-19 Score=143.61 Aligned_cols=140 Identities=19% Similarity=0.164 Sum_probs=104.6
Q ss_pred CCCChhhhhhhhhcCCCeeeeeccc--------hhhchHHHHHhhhhcCCCEEEEecCCceeeeeeccccCceEEEEEeC
Q 032030 3 NGALPEERIRAVETGGCPHAAIRED--------ISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDV 74 (148)
Q Consensus 3 ~~~~~~~~~~~~~~nGcicc~i~~d--------l~~~~~al~~l~~~~~~D~IliEtsG~~~~~~~~~~~~d~~i~vvDa 74 (148)
.|++.++|+||.....|+..+++.. ++..+....+++...++|+|||||+|+.+.+......+|.+++++++
T Consensus 100 ~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p 179 (332)
T PRK09435 100 GGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETAVAGMVDFFLLLQLP 179 (332)
T ss_pred chhhhchHhHHHhhcCCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhHHHHhCCEEEEEecC
Confidence 5889999999876566666666542 23334444455666799999999999987654445679999999988
Q ss_pred CCCCCccccCCCCcceeeEEEEecCCCCCchhhhHH----HHHHHHHhcC-----CCCcEEEEEecCCCCHHHHHHhhh
Q 032030 75 SGGDKIPRKGGPGITQADLLVINKTDLASAIGADLA----VMERDALRMR-----DGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 75 ~~~~~~~~~~~~qi~~ADivViNK~DL~~~~~~~l~----~~~~~i~~~n-----p~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..+++++..+..++++||++|+||+|+.+. ...+ .+.+.++-.+ +..||+++||++|.|+++|++.+.
T Consensus 180 ~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~--~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~ 256 (332)
T PRK09435 180 GAGDELQGIKKGIMELADLIVINKADGDNK--TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIE 256 (332)
T ss_pred CchHHHHHHHhhhhhhhheEEeehhcccch--hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 888888766667999999999999999875 3333 3444444323 237999999999999999998764
No 13
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.61 E-value=1.6e-16 Score=117.57 Aligned_cols=86 Identities=27% Similarity=0.361 Sum_probs=61.6
Q ss_pred cCCCeeeeeccchhhchHHHH-Hhh-hhcCCCEEEEecCCceeee----ee--cc-----ccCceEEEEEeCCCCCCcc-
Q 032030 16 TGGCPHAAIREDISINLGPLE-ELS-NLFKADLLLCESGGDNLAA----NF--SR-----ELADYIIYIIDVSGGDKIP- 81 (148)
Q Consensus 16 ~nGcicc~i~~dl~~~~~al~-~l~-~~~~~D~IliEtsG~~~~~----~~--~~-----~~~d~~i~vvDa~~~~~~~- 81 (148)
+|||+||+.++++...+..+. ++. ..++||+|+|||+|++.+. .+ .+ ...|.+++++|+.++....
T Consensus 57 ~~GCiCC~~~~~l~~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~ 136 (158)
T cd03112 57 NNGCICCTVRGDLIRALLDLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLD 136 (158)
T ss_pred CCCEeEeeCchhHHHHHHHHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhh
Confidence 589999999999966554332 332 2468999999999997431 11 11 1346679999998765432
Q ss_pred --ccCCCCcceeeEEEEecCCC
Q 032030 82 --RKGGPGITQADLLVINKTDL 101 (148)
Q Consensus 82 --~~~~~qi~~ADivViNK~DL 101 (148)
.....|+++||+||+||+||
T Consensus 137 ~~~~~~~Qi~~ad~ivlnk~dl 158 (158)
T cd03112 137 QQTEAQSQIAFADRILLNKTDL 158 (158)
T ss_pred ccHHHHHHHHHCCEEEEecccC
Confidence 12346999999999999997
No 14
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.48 E-value=1.2e-13 Score=111.82 Aligned_cols=140 Identities=19% Similarity=0.120 Sum_probs=87.5
Q ss_pred CCCChhhhhhhhhcCCCeeeeeccchh--------hchHHHHHhhhhcCCCEEEEecCCceeeeeeccccCceEEEEEeC
Q 032030 3 NGALPEERIRAVETGGCPHAAIREDIS--------INLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDV 74 (148)
Q Consensus 3 ~~~~~~~~~~~~~~nGcicc~i~~dl~--------~~~~al~~l~~~~~~D~IliEtsG~~~~~~~~~~~~d~~i~vvDa 74 (148)
.|++.++|+|+.+...+.-+++++... .....+.++++..++|+|||||+|.+....-....+|.++++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i~~~aD~i~vv~~~ 157 (300)
T TIGR00750 78 GGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQSEVDIANMADTFVVVTIP 157 (300)
T ss_pred hhhhcccchhhhhcccCCCceeeecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHHHHhhceEEEEecC
Confidence 467888888775533333333322221 123334445556799999999999885432223456777777766
Q ss_pred CCCCCccccCCCCcceeeEEEEecCCCCCchhhhHHHHH----HHHHh-----cCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 75 SGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVME----RDALR-----MRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 75 ~~~~~~~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~----~~i~~-----~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..++++....+.....++++|+||+|+.+. ....... ..++. .++..+++++||++|.|+++|++++.
T Consensus 158 ~~~~el~~~~~~l~~~~~ivv~NK~Dl~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~ 234 (300)
T TIGR00750 158 GTGDDLQGIKAGLMEIADIYVVNKADGEGA--TNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIE 234 (300)
T ss_pred CccHHHHHHHHHHhhhccEEEEEcccccch--hHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHH
Confidence 666665443344556779999999999876 4322111 11111 12335799999999999999998764
No 15
>COG1159 Era GTPase [General function prediction only]
Probab=98.78 E-value=3.7e-08 Score=79.49 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=76.0
Q ss_pred cCCCEEEEecCCceeeee-----------eccccCceEEEEEeCCCCCC----c-cc-cCCCCcceeeEEEEecCCCCCc
Q 032030 42 FKADLLLCESGGDNLAAN-----------FSRELADYIIYIIDVSGGDK----I-PR-KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~~~-----------~~~~~~d~~i~vvDa~~~~~----~-~~-~~~~qi~~ADivViNK~DL~~~ 104 (148)
...-+|||.|.|+--+.. -.-..+|++++++|+.+... . .. ....+.+ .++++||+|..++
T Consensus 52 ~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~p--vil~iNKID~~~~ 129 (298)
T COG1159 52 DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTP--VILVVNKIDKVKP 129 (298)
T ss_pred CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCC--eEEEEEccccCCc
Confidence 468899999999853210 01247899999999987432 1 11 1122345 8999999999998
Q ss_pred hhhh-HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 105 IGAD-LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 105 ~~~~-l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.. +..+.+..+...|..+++++||++|.|++.|.+.+.
T Consensus 130 --~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~ 168 (298)
T COG1159 130 --KTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIK 168 (298)
T ss_pred --HHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHH
Confidence 77 678888899999999999999999999999998753
No 16
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.77 E-value=2.5e-08 Score=71.19 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=71.6
Q ss_pred CCCEEEEecCCceeeee-----e------ccccCceEEEEEeCCCCCCc-cccCC---CCcceeeEEEEecCCCC-Cchh
Q 032030 43 KADLLLCESGGDNLAAN-----F------SRELADYIIYIIDVSGGDKI-PRKGG---PGITQADLLVINKTDLA-SAIG 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~-----~------~~~~~d~~i~vvDa~~~~~~-~~~~~---~qi~~ADivViNK~DL~-~~~~ 106 (148)
+.++++++|.|...... + .-...|.+++++|+.+.... ..... .......++|+||+|+. ++
T Consensus 50 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-- 127 (168)
T cd04163 50 DAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK-- 127 (168)
T ss_pred CeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccH--
Confidence 57899999999753211 0 12356889999999876221 11000 11123479999999998 45
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.++....+.++..++..+++++|++++.|++++++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~ 165 (168)
T cd04163 128 EDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIV 165 (168)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHH
Confidence 66677777788777778999999999999999999875
No 17
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.69 E-value=1e-07 Score=70.16 Aligned_cols=77 Identities=19% Similarity=0.197 Sum_probs=56.8
Q ss_pred ccCceEEEEEeCCCCCCc-cc---cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHH
Q 032030 63 ELADYIIYIIDVSGGDKI-PR---KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 63 ~~~d~~i~vvDa~~~~~~-~~---~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~ 138 (148)
..+|.+++|+|+..++.. .. ......+ -++++||+|+.+. +.+.+.+.+++.....|++++||++|.|+++
T Consensus 63 ~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~--ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 63 QDVDMLIYVHGANDPESRLPAGLLDIGVSKR--QIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQ 137 (158)
T ss_pred hcCCEEEEEEeCCCcccccCHHHHhccCCCC--eEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHH
Confidence 357999999999876532 11 1111223 6899999999653 4566777777766667999999999999999
Q ss_pred HHHhhh
Q 032030 139 TLSITH 144 (148)
Q Consensus 139 l~~~~~ 144 (148)
|+++++
T Consensus 138 l~~~l~ 143 (158)
T PRK15467 138 LVDYLA 143 (158)
T ss_pred HHHHHH
Confidence 999875
No 18
>PRK13768 GTPase; Provisional
Probab=98.68 E-value=6.5e-08 Score=76.70 Aligned_cols=102 Identities=17% Similarity=0.098 Sum_probs=69.4
Q ss_pred hhhcCCCEEEEecCCceeeee-------e----ccccCceEEEEEeCCCCCCcc-----cc------CCCCcceeeEEEE
Q 032030 39 SNLFKADLLLCESGGDNLAAN-------F----SRELADYIIYIIDVSGGDKIP-----RK------GGPGITQADLLVI 96 (148)
Q Consensus 39 ~~~~~~D~IliEtsG~~~~~~-------~----~~~~~d~~i~vvDa~~~~~~~-----~~------~~~qi~~ADivVi 96 (148)
.+..+.|++++++.|..-... + .....+.+++|+|+..+.... .. ....++ -++|+
T Consensus 92 l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~--~i~v~ 169 (253)
T PRK13768 92 IESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLP--QIPVL 169 (253)
T ss_pred HHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCC--EEEEE
Confidence 344577999999999632111 1 111267889999997654210 00 011233 79999
Q ss_pred ecCCCCCchhhhHHHHHHH----------------------------HHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 97 NKTDLASAIGADLAVMERD----------------------------ALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 97 NK~DL~~~~~~~l~~~~~~----------------------------i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
||+|+.+. .+.++..+. +++.++..+++++|++++.|+++|++++.
T Consensus 170 nK~D~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~ 243 (253)
T PRK13768 170 NKADLLSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQ 243 (253)
T ss_pred EhHhhcCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHH
Confidence 99999987 665554443 34456778999999999999999999875
No 19
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.66 E-value=2e-07 Score=65.45 Aligned_cols=101 Identities=21% Similarity=0.100 Sum_probs=70.1
Q ss_pred CCCEEEEecCCceeeeee----------ccccCceEEEEEeCCCCCCcccc----CCCCcceeeEEEEecCCCCCchhhh
Q 032030 43 KADLLLCESGGDNLAANF----------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~----------~~~~~d~~i~vvDa~~~~~~~~~----~~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
..++.++++.|....... .-...|.+++++|+..+...... ...+.....++|+||+|+... ..
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~ 121 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE--EE 121 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh--hh
Confidence 578999999997532110 01356888999999877543111 111223337999999999987 55
Q ss_pred HHHHH---HHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 109 LAVME---RDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 109 l~~~~---~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
..... .......+..+++++|++++.|++++++++.-
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~ 161 (163)
T cd00880 122 EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIE 161 (163)
T ss_pred HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHh
Confidence 54442 33445567889999999999999999998754
No 20
>PRK00089 era GTPase Era; Reviewed
Probab=98.64 E-value=2.1e-07 Score=74.58 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=70.6
Q ss_pred CCCEEEEecCCceeee-----ee------ccccCceEEEEEeCCCCCCc-----cc-cCCCCcceeeEEEEecCCCC-Cc
Q 032030 43 KADLLLCESGGDNLAA-----NF------SRELADYIIYIIDVSGGDKI-----PR-KGGPGITQADLLVINKTDLA-SA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~-----~~------~~~~~d~~i~vvDa~~~~~~-----~~-~~~~qi~~ADivViNK~DL~-~~ 104 (148)
+..+++++|.|..... .+ .-..+|.+++++|+...... .. ......+ .++|+||+|+. +.
T Consensus 52 ~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p--vilVlNKiDl~~~~ 129 (292)
T PRK00089 52 DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTP--VILVLNKIDLVKDK 129 (292)
T ss_pred CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCC--EEEEEECCcCCCCH
Confidence 4789999999974321 00 11367999999999873221 11 1111234 79999999998 55
Q ss_pred hhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 105 IGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 105 ~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.++....+.+.+..+..+++++||++|.|++++++++.-
T Consensus 130 --~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~ 168 (292)
T PRK00089 130 --EELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAK 168 (292)
T ss_pred --HHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 566666677776677889999999999999999998753
No 21
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.64 E-value=8e-08 Score=70.70 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=66.7
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccc--c--CCCCcceeeEEEEecCCCCCchhhhHH----H
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPR--K--GGPGITQADLLVINKTDLASAIGADLA----V 111 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~--~--~~~qi~~ADivViNK~DL~~~~~~~l~----~ 111 (148)
+.++++++|.|.... ... .-..+|.+++|+|+.++..... . ...+.....++|+||+|+.++ ++++ .
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~--~~~~~~~~~ 138 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGE--EDLEEVLRE 138 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcch--hcHHHHHHH
Confidence 568999999997531 111 1135788999999987643210 0 001112337999999999875 4443 3
Q ss_pred HHHHHHhcC------------CCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 112 MERDALRMR------------DGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 112 ~~~~i~~~n------------p~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+.+.++... ...+++++||++|.|++++++++..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~ 184 (189)
T cd00881 139 IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVE 184 (189)
T ss_pred HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHh
Confidence 444444322 3579999999999999999998764
No 22
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.63 E-value=1.6e-07 Score=66.84 Aligned_cols=79 Identities=14% Similarity=0.026 Sum_probs=53.1
Q ss_pred cCceEEEEEeCCCCCCccc-cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHh
Q 032030 64 LADYIIYIIDVSGGDKIPR-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 142 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~-~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~ 142 (148)
.+|.++.|+|+.+...... .........-++|+||+||.+. ....+...+..++.+ ..+++++||++|.|+++++++
T Consensus 62 ~ad~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 62 DADVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEA-DVDIERAKELLETAG-AEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred cCCEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCc-ccCHHHHHHHHHHcC-CCcEEEEecCCCCCHHHHHHH
Confidence 6788999999977654311 1111112246889999999763 023345555555433 348899999999999999988
Q ss_pred hh
Q 032030 143 TH 144 (148)
Q Consensus 143 ~~ 144 (148)
++
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
No 23
>COG2403 Predicted GTPase [General function prediction only]
Probab=98.62 E-value=1.3e-07 Score=78.60 Aligned_cols=79 Identities=24% Similarity=0.325 Sum_probs=64.5
Q ss_pred CCEEEEecCCceeeeeeccccCceEEEEEeCCCC-CCccccC-CCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCC
Q 032030 44 ADLLLCESGGDNLAANFSRELADYIIYIIDVSGG-DKIPRKG-GPGITQADLLVINKTDLASAIGADLAVMERDALRMRD 121 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~~~~~d~~i~vvDa~~~-~~~~~~~-~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np 121 (148)
-|+|+.|.+|...+ +-.-|++|+|+||.+. ..+.... +-.++.||++++||+|-++. +.++++.+.++++||
T Consensus 225 aD~IlwdGgnndfP----fvkpd~~Ivvvda~rpg~ei~~~pGe~~irlAD~VIItkveea~~--~kvrkI~~~I~~iNP 298 (449)
T COG2403 225 ADFILWDGGNNDFP----FVKPDLHIVVVDALRPGEEIGSFPGELRIRLADLVIITKVEEAMA--EKVRKIVRNIEEINP 298 (449)
T ss_pred ccEEEEeCCCCCCC----cccCCeeEEEecCCCCchhhccCCCceeeeeccEEEEecccccch--HHHHHHHHHHHhhCC
Confidence 49999999996654 3356889999999884 3332211 23789999999999999999 899999999999999
Q ss_pred CCcEEEE
Q 032030 122 GGPFIFA 128 (148)
Q Consensus 122 ~a~vi~t 128 (148)
.|.|+.+
T Consensus 299 ~A~Vi~~ 305 (449)
T COG2403 299 KAEVILA 305 (449)
T ss_pred CcEEEec
Confidence 9999877
No 24
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.62 E-value=3.5e-08 Score=72.34 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=50.9
Q ss_pred HHHhhhhcCCCEEEEecCCceeeeeeccccCceEEEEEeCCCCCCccccCCCCcceeeEEEEecCC
Q 032030 35 LEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTD 100 (148)
Q Consensus 35 l~~l~~~~~~D~IliEtsG~~~~~~~~~~~~d~~i~vvDa~~~~~~~~~~~~qi~~ADivViNK~D 100 (148)
..+.++..++|+|||+|.|........-..+|..+.++.+..++..+.++.++++.||++++||+|
T Consensus 83 ~~~~~~~~~~D~iiIDtaG~~~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 83 VIRVLDAAGFDVIIVETVGVGQSEVDIASMADTTVVVMAPGAGDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred HHHHHHhcCCCEEEEECCccChhhhhHHHhCCEEEEEECCCchhHHHHhhhhHhhhcCEEEEeCCC
Confidence 334444458999999999976432111246788999998887777777788999999999999998
No 25
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.61 E-value=4.4e-07 Score=65.39 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=68.5
Q ss_pred CCCEEEEecCCceee----ee---e-------ccccCceEEEEEeCCCCCCccc----cCCCCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNLA----AN---F-------SRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~----~~---~-------~~~~~d~~i~vvDa~~~~~~~~----~~~~qi~~ADivViNK~DL~~~ 104 (148)
+.++.+++|.|.... .. + .....|.++.++|+..+..... ..........++++||+|+.+.
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 49 GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred CeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 567899999996421 00 0 0125688999999877633211 0000112237999999999865
Q ss_pred hhhhHHHHHHHHHhcCC---CCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 105 IGADLAVMERDALRMRD---GGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 105 ~~~~l~~~~~~i~~~np---~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
-....+.+.+.+++..+ ..+++++||++|.|++++++++.++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 129 DSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 21244555566654443 5789999999999999999998764
No 26
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.61 E-value=4e-07 Score=66.72 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=67.5
Q ss_pred EEecCCceee-eee------ccccCceEEEEEeCCCCCCc-cccCCCCcceeeEEEEecCCCC-CchhhhHHHHHHHHHh
Q 032030 48 LCESGGDNLA-ANF------SRELADYIIYIIDVSGGDKI-PRKGGPGITQADLLVINKTDLA-SAIGADLAVMERDALR 118 (148)
Q Consensus 48 liEtsG~~~~-~~~------~~~~~d~~i~vvDa~~~~~~-~~~~~~qi~~ADivViNK~DL~-~~~~~~l~~~~~~i~~ 118 (148)
+|.|.|--+. ..| ....+|.++.+.|+...... +-.+...+..=.+=||||+|+. ++ +++++.+++++.
T Consensus 40 ~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~--~~i~~a~~~L~~ 117 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDD--ANIERAKKWLKN 117 (143)
T ss_pred EEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccch--hhHHHHHHHHHH
Confidence 4788885332 011 12468999999999876442 2222223333378899999999 66 788999999986
Q ss_pred cCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 119 MRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 119 ~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.... ++|++|+.+|+|+++|.+++.
T Consensus 118 aG~~-~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 118 AGVK-EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred cCCC-CeEEEECCCCcCHHHHHHHHh
Confidence 6554 679999999999999999863
No 27
>PRK15494 era GTPase Era; Provisional
Probab=98.57 E-value=2.6e-07 Score=76.19 Aligned_cols=100 Identities=14% Similarity=0.037 Sum_probs=67.7
Q ss_pred CCCEEEEecCCceee-----eeec------cccCceEEEEEeCCCCCCc-cc-cCC--CCcceeeEEEEecCCCCCchhh
Q 032030 43 KADLLLCESGGDNLA-----ANFS------RELADYIIYIIDVSGGDKI-PR-KGG--PGITQADLLVINKTDLASAIGA 107 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-----~~~~------~~~~d~~i~vvDa~~~~~~-~~-~~~--~qi~~ADivViNK~DL~~~~~~ 107 (148)
+..++|+.|.|.... ..+. -..+|.+++|+|+.....- .. ... ......-++|+||+|+.+.
T Consensus 99 ~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~--- 175 (339)
T PRK15494 99 DTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK--- 175 (339)
T ss_pred CeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc---
Confidence 345788999997321 0110 1367999999998764321 10 000 0111235899999999754
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 108 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 108 ~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+..+.+.+++.++..+++++||++|.|++++++++.-
T Consensus 176 ~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~ 213 (339)
T PRK15494 176 YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 213 (339)
T ss_pred cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHH
Confidence 35667777777778889999999999999999998753
No 28
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.55 E-value=3.1e-07 Score=67.19 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=54.3
Q ss_pred ccCceEEEEEeCCCCCCc-----ccc---CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 032030 63 ELADYIIYIIDVSGGDKI-----PRK---GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI 134 (148)
Q Consensus 63 ~~~d~~i~vvDa~~~~~~-----~~~---~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~ 134 (148)
..+|.+++|+|+..+..- ... .....+ -++|+||+||.++ +++....+.+++..+.. ++++||+++.
T Consensus 7 ~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p--~ilVlNKiDl~~~--~~~~~~~~~~~~~~~~~-~~~iSa~~~~ 81 (157)
T cd01858 7 DSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKH--LIFVLNKCDLVPT--WVTARWVKILSKEYPTI-AFHASINNPF 81 (157)
T ss_pred hhCCEEEEEEECCCCccccCHHHHHHHHhccCCCC--EEEEEEchhcCCH--HHHHHHHHHHhcCCcEE-EEEeeccccc
Confidence 367999999999765221 111 111234 6999999999987 66666666666555433 6889999999
Q ss_pred CHHHHHHhhh
Q 032030 135 GIIFTLSITH 144 (148)
Q Consensus 135 gi~~l~~~~~ 144 (148)
|+++|++++.
T Consensus 82 ~~~~L~~~l~ 91 (157)
T cd01858 82 GKGSLIQLLR 91 (157)
T ss_pred cHHHHHHHHH
Confidence 9999988763
No 29
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.53 E-value=2.5e-07 Score=67.18 Aligned_cols=98 Identities=17% Similarity=0.159 Sum_probs=64.7
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc-------ccC----CCCcceeeEEEEecCCCCCchhhh
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP-------RKG----GPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~-------~~~----~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
+..+.++++.|....... .-..+|.+++|+|+....... ... ...++ -++++||+|+.+. ..
T Consensus 49 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p--~ilv~NK~D~~~~--~~ 124 (167)
T cd04160 49 NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP--LLILANKQDLPDA--LS 124 (167)
T ss_pred CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC--EEEEEEccccccC--CC
Confidence 467788888886321111 013578899999987653211 000 12345 7899999999776 54
Q ss_pred HHHHHHHHHhc----C-CCCcEEEEEecCCCCHHHHHHhhh
Q 032030 109 LAVMERDALRM----R-DGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 109 l~~~~~~i~~~----n-p~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+.+.+.++.. + ...+++++||++|.|++++++|+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 125 VEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred HHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 55555555432 1 345899999999999999999874
No 30
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.51 E-value=2.4e-07 Score=73.73 Aligned_cols=98 Identities=11% Similarity=0.023 Sum_probs=66.8
Q ss_pred CCCEEEEecCCceee-ee----e------ccccCceEEEEEeCCCCCCccc-----cCCCCcceeeEEEEecCCCCCchh
Q 032030 43 KADLLLCESGGDNLA-AN----F------SRELADYIIYIIDVSGGDKIPR-----KGGPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~----~------~~~~~d~~i~vvDa~~~~~~~~-----~~~~qi~~ADivViNK~DL~~~~~ 106 (148)
+..++|+.|.|.... .. + .-..+|.+++|+|+..+..... ......+ -++|+||+|+.+.
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p--~ilV~NK~Dl~~~-- 122 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRP--VVLTRNKLDNKFK-- 122 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCC--EEEEEECeeCCCH--
Confidence 345899999997421 00 0 1135789999999987643211 1112334 5999999999876
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.++....+.+....+..+++++||++|.|+++|++++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~ 160 (270)
T TIGR00436 123 DKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIE 160 (270)
T ss_pred HHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHH
Confidence 55544444454455666899999999999999998874
No 31
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.47 E-value=6.3e-07 Score=64.92 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=63.0
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
+.++.+++|.|......+ ....+|.+++|+|+..+..... .....++ .++|+||+|+.+. . .+.+.
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p--~ivv~NK~Dl~~~--~-~~~~~ 123 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVP--FIVALNKIDKPNA--N-PERVK 123 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC--EEEEEEceecccc--c-HHHHH
Confidence 678999999996321111 1246789999999987532110 1112344 7999999999854 2 12222
Q ss_pred HHHH--------hcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 114 RDAL--------RMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 114 ~~i~--------~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.++ ......+++++|+++|.|++++++++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T cd01887 124 NELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAIL 162 (168)
T ss_pred HHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHH
Confidence 2221 122346899999999999999999875
No 32
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.46 E-value=5.1e-07 Score=76.50 Aligned_cols=104 Identities=19% Similarity=0.182 Sum_probs=72.5
Q ss_pred cCCCEEEEecCCce----ee---eeec-------cccCceEEEEEeCCCCCCcccc----CCCCcceeeEEEEecCCCCC
Q 032030 42 FKADLLLCESGGDN----LA---ANFS-------RELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLAS 103 (148)
Q Consensus 42 ~~~D~IliEtsG~~----~~---~~~~-------~~~~d~~i~vvDa~~~~~~~~~----~~~qi~~ADivViNK~DL~~ 103 (148)
.+=.+.+|+|-|+= +. ..|+ -..+|.++.|+||.++..-+.. +...-..|.++|+||.|+.+
T Consensus 224 ~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~ 303 (444)
T COG1160 224 DGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVE 303 (444)
T ss_pred CCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCC
Confidence 35668999999982 11 1111 1357889999999988542211 11123446899999999987
Q ss_pred chhhhHHHHHHHHHhcC---CCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 104 AIGADLAVMERDALRMR---DGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 104 ~~~~~l~~~~~~i~~~n---p~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.-....+..++.++... ..+|++++||++|.|+.++++...-
T Consensus 304 ~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 304 EDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKE 348 (444)
T ss_pred chhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHH
Confidence 52245566777776555 4689999999999999999987653
No 33
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.45 E-value=1.2e-06 Score=63.63 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=64.3
Q ss_pred CCCEEEEecCCceee---e-------eec--cccCceEEEEEeCCCCCCc---------cccCC--CCcceeeEEEEecC
Q 032030 43 KADLLLCESGGDNLA---A-------NFS--RELADYIIYIIDVSGGDKI---------PRKGG--PGITQADLLVINKT 99 (148)
Q Consensus 43 ~~D~IliEtsG~~~~---~-------~~~--~~~~d~~i~vvDa~~~~~~---------~~~~~--~qi~~ADivViNK~ 99 (148)
+..+.++.|.|.... . .+. ....|.+++|+|+...... ..... ...+ -++|+||+
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~p--vilv~NK~ 123 (168)
T cd01897 46 YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKP--VIVVLNKI 123 (168)
T ss_pred ceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCC--eEEEEEcc
Confidence 467889999996310 0 000 1235788999998764321 00111 1344 69999999
Q ss_pred CCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 100 DLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 100 DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
|+.+. .......+..+ .+..+++++||++|.|++++++++...
T Consensus 124 Dl~~~--~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 124 DLLTF--EDLSEIEEEEE--LEGEEVLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred ccCch--hhHHHHHHhhh--hccCceEEEEecccCCHHHHHHHHHHH
Confidence 99877 65554434333 245789999999999999999988654
No 34
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.45 E-value=7.4e-07 Score=69.53 Aligned_cols=100 Identities=16% Similarity=0.121 Sum_probs=65.7
Q ss_pred CCCEEEEecCCceee-----eeeccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHH
Q 032030 43 KADLLLCESGGDNLA-----ANFSRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAV 111 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-----~~~~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~ 111 (148)
+.-+-+|.+.|.--. ........|..+.|+|+.++..-+. .....++ -++|+||+|+.++ .++++
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip--~ivvvNK~D~~~~--~~~~~ 158 (224)
T cd04165 83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP--VFVVVTKIDLAPA--NILQE 158 (224)
T ss_pred CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC--EEEEEECccccCH--HHHHH
Confidence 455778888885311 1111124688999999987643111 1122455 4999999999887 66655
Q ss_pred HHHHHHhc----------------------------CCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 112 MERDALRM----------------------------RDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 112 ~~~~i~~~----------------------------np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
..+.+++. ....|++.+|+.+|.|+++|++++..+
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 44444321 124599999999999999999988654
No 35
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.44 E-value=9.9e-07 Score=64.45 Aligned_cols=73 Identities=19% Similarity=-0.004 Sum_probs=50.9
Q ss_pred ceEEEEEeCCCCCCc-----c--ccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHH
Q 032030 66 DYIIYIIDVSGGDKI-----P--RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 66 d~~i~vvDa~~~~~~-----~--~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~ 138 (148)
|.++.|+|+..+... . .......+ -++|+||+|+++. +++......+++.. ..+++++||++|.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p--~IiVlNK~Dl~~~--~~~~~~~~~~~~~~-~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKK--LILVLNKADLVPK--EVLRKWLAYLRHSY-PTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCC--EEEEEechhcCCH--HHHHHHHHHHHhhC-CceEEEEeccCCcChhh
Confidence 678899999765321 1 11223455 7999999999877 65544333444333 46789999999999999
Q ss_pred HHHhh
Q 032030 139 TLSIT 143 (148)
Q Consensus 139 l~~~~ 143 (148)
|.+.+
T Consensus 76 L~~~i 80 (155)
T cd01849 76 KESAF 80 (155)
T ss_pred HHHHH
Confidence 99865
No 36
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.41 E-value=1.3e-06 Score=65.74 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=63.9
Q ss_pred CCCEEEEecCCcee-eeee--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhH----
Q 032030 43 KADLLLCESGGDNL-AANF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADL---- 109 (148)
Q Consensus 43 ~~D~IliEtsG~~~-~~~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l---- 109 (148)
+..+.++.|.|..- ...+ ....+|.+++|+|+..+..... ......+ -++++||+|+.+. .+.
T Consensus 67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~--~iiv~NK~Dl~~~--~~~~~~~ 142 (192)
T cd01889 67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK--LIVVLNKIDLIPE--EERERKI 142 (192)
T ss_pred CceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC--EEEEEECcccCCH--HHHHHHH
Confidence 57788999999631 1111 1235688999999987643211 0001223 5799999999865 443
Q ss_pred HHHHHHHHhc-----CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRM-----RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~-----np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.+.+.++.. +.+.+++++||++|.|+++|++++.
T Consensus 143 ~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~ 182 (192)
T cd01889 143 EKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLN 182 (192)
T ss_pred HHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHH
Confidence 3333333322 3567999999999999999998763
No 37
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.41 E-value=4.9e-07 Score=67.92 Aligned_cols=98 Identities=20% Similarity=0.153 Sum_probs=62.4
Q ss_pred CCEEEEecCCceee--eee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHHH
Q 032030 44 ADLLLCESGGDNLA--ANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVMER 114 (148)
Q Consensus 44 ~D~IliEtsG~~~~--~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~ 114 (148)
.-+-+|.+.|-... ... .-..+|..+.|||+..+...+. ....+++ -++++||+|+. . .++++..+
T Consensus 70 ~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p--~ivvlNK~D~~-~--~~~~~~~~ 144 (188)
T PF00009_consen 70 RKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP--IIVVLNKMDLI-E--KELEEIIE 144 (188)
T ss_dssp EEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S--EEEEEETCTSS-H--HHHHHHHH
T ss_pred cceeecccccccceeecccceecccccceeeeecccccccccccccccccccccc--eEEeeeeccch-h--hhHHHHHH
Confidence 44566666664310 000 1136799999999998754211 1122455 79999999999 4 44444433
Q ss_pred HHH-----hc--CC--CCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 115 DAL-----RM--RD--GGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 115 ~i~-----~~--np--~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
.++ .. ++ ..|++++||++|.|+++|++.+.-.
T Consensus 145 ~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 145 EIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp HHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHh
Confidence 333 22 22 4689999999999999999987654
No 38
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.39 E-value=1.2e-06 Score=73.64 Aligned_cols=99 Identities=20% Similarity=0.205 Sum_probs=66.9
Q ss_pred CCEEEEecCCceee-------eee-------ccccCceEEEEEeCCCCCCcccc----CCCCcceeeEEEEecCCCC-Cc
Q 032030 44 ADLLLCESGGDNLA-------ANF-------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLA-SA 104 (148)
Q Consensus 44 ~D~IliEtsG~~~~-------~~~-------~~~~~d~~i~vvDa~~~~~~~~~----~~~qi~~ADivViNK~DL~-~~ 104 (148)
..+.++.|.|..-. ..+ .-..+|.+++|+|+.++...+.. ....-...-++|+||+|+. +.
T Consensus 220 ~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~ 299 (429)
T TIGR03594 220 KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDE 299 (429)
T ss_pred cEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCH
Confidence 46788889886321 001 01357899999999876432110 0001123479999999998 55
Q ss_pred hhhhHHHHHHHHHhcC---CCCcEEEEEecCCCCHHHHHHhhh
Q 032030 105 IGADLAVMERDALRMR---DGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 105 ~~~~l~~~~~~i~~~n---p~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+.+.+.++... +.++++++||++|.|++++++++.
T Consensus 300 --~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 300 --KTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAID 340 (429)
T ss_pred --HHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHH
Confidence 56667777776544 458999999999999999998764
No 39
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=8.4e-07 Score=76.84 Aligned_cols=98 Identities=21% Similarity=0.165 Sum_probs=65.3
Q ss_pred CCEEEEecCCceee-eeecc--ccCceEEEEEeCCCCCCccccC----CCCcceeeEEEEecCCCCCchhhhHHHHHHHH
Q 032030 44 ADLLLCESGGDNLA-ANFSR--ELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDA 116 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~~~--~~~d~~i~vvDa~~~~~~~~~~----~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i 116 (148)
+-+=+|.|.|-... ....+ ...|-.+.||||.+|..-+... .-+.-.+-+.|+||+|+.++ +-++++..+
T Consensus 125 ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a---dpe~V~~q~ 201 (650)
T KOG0462|consen 125 YLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA---DPERVENQL 201 (650)
T ss_pred eEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC---CHHHHHHHH
Confidence 34445666664321 11111 2356679999999997643211 11233448999999999875 455666666
Q ss_pred HhcC--CCCcEEEEEecCCCCHHHHHHhhh
Q 032030 117 LRMR--DGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 117 ~~~n--p~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+++ |.++++.+|||+|.|++++++.+.
T Consensus 202 ~~lF~~~~~~~i~vSAK~G~~v~~lL~AII 231 (650)
T KOG0462|consen 202 FELFDIPPAEVIYVSAKTGLNVEELLEAII 231 (650)
T ss_pred HHHhcCCccceEEEEeccCccHHHHHHHHH
Confidence 6544 778999999999999999998764
No 40
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.37 E-value=1.9e-06 Score=62.71 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=50.6
Q ss_pred cCceEEEEEeCCCCCCccc--c----CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHH
Q 032030 64 LADYIIYIIDVSGGDKIPR--K----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 137 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~--~----~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~ 137 (148)
.+|.++.|+|+..+..... . .....+ -++|+||+|+.+. ...+...+..+ ..+.+++++||++|.|++
T Consensus 12 ~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p--~iiv~NK~Dl~~~--~~~~~~~~~~~--~~~~~~~~iSa~~~~gi~ 85 (156)
T cd01859 12 ESDVVLEVLDARDPELTRSRKLERYVLELGKK--LLIVLNKADLVPK--EVLEKWKSIKE--SEGIPVVYVSAKERLGTK 85 (156)
T ss_pred hCCEEEEEeeCCCCcccCCHHHHHHHHhCCCc--EEEEEEhHHhCCH--HHHHHHHHHHH--hCCCcEEEEEccccccHH
Confidence 3688899999876532111 0 111333 6999999999865 54444332222 245689999999999999
Q ss_pred HHHHhhh
Q 032030 138 FTLSITH 144 (148)
Q Consensus 138 ~l~~~~~ 144 (148)
+|++.+.
T Consensus 86 ~L~~~l~ 92 (156)
T cd01859 86 ILRRTIK 92 (156)
T ss_pred HHHHHHH
Confidence 9998875
No 41
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.36 E-value=1.5e-06 Score=61.81 Aligned_cols=96 Identities=21% Similarity=0.207 Sum_probs=64.9
Q ss_pred CCCEEEEecCCceeeeee-----------ccccCceEEEEEeCCCCCCcc--ccCCCCcceeeEEEEecCCCCCchhhhH
Q 032030 43 KADLLLCESGGDNLAANF-----------SRELADYIIYIIDVSGGDKIP--RKGGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~-----------~~~~~d~~i~vvDa~~~~~~~--~~~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+..+.++.|.|....... ....+|.++.++|+....... ...........++|+||+|+.+. ...
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~--~~~ 125 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPD--SEL 125 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCc--ccc
Confidence 457889999996422110 113578899999998643321 11111222337999999999987 543
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhhc
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 147 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~~ 147 (148)
.......+++++||+++.|+++|++++.-.+
T Consensus 126 -------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 126 -------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 2334567999999999999999999987553
No 42
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.35 E-value=2.4e-06 Score=72.07 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=67.4
Q ss_pred CCCEEEEecCCceee-------eee-------ccccCceEEEEEeCCCCCCcccc----CCCCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNLA-------ANF-------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-------~~~-------~~~~~d~~i~vvDa~~~~~~~~~----~~~qi~~ADivViNK~DL~~~ 104 (148)
+.++.+++|.|..-. ..+ .-..+|.++.|+|+..+...+.. ........-++++||+|+.++
T Consensus 220 ~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 220 GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDE 299 (435)
T ss_pred CeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCH
Confidence 456889999996311 000 01246899999999877432110 000112337999999999976
Q ss_pred hhhhHHHHHHHHHhcC---CCCcEEEEEecCCCCHHHHHHhhh
Q 032030 105 IGADLAVMERDALRMR---DGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 105 ~~~~l~~~~~~i~~~n---p~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+.+.+.++... +.+|++++||++|.|++++++.+.
T Consensus 300 --~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~ 340 (435)
T PRK00093 300 --KTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAID 340 (435)
T ss_pred --HHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHH
Confidence 66666666665433 568999999999999999998753
No 43
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.35 E-value=2.3e-06 Score=61.61 Aligned_cols=98 Identities=13% Similarity=0.032 Sum_probs=60.4
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc-------c---cc---CCCCcceeeEEEEecCCCCCchh
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI-------P---RK---GGPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~-------~---~~---~~~qi~~ADivViNK~DL~~~~~ 106 (148)
+..+-++++.|......++ -..+|.+++|+|+...... . .. ....++ -++|+||+|+.+.
T Consensus 44 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~iiv~NK~Dl~~~-- 119 (162)
T cd04157 44 NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP--ILFFANKMDLPDA-- 119 (162)
T ss_pred CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCC--EEEEEeCccccCC--
Confidence 3445677777753211110 1357889999999765321 0 00 112344 6999999999875
Q ss_pred hhHHHHHHHHHhc---CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 ADLAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 ~~l~~~~~~i~~~---np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+++.+.+.-. +...+++++||++|.|++++++++.
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 120 LTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred CCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 4334444433211 1223689999999999999999874
No 44
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.34 E-value=4.2e-06 Score=60.76 Aligned_cols=98 Identities=19% Similarity=0.198 Sum_probs=62.5
Q ss_pred CEEEEecCCceee----ee----ec--cccCceEEEEEeCCCCC-Cc---c---c---cCCCC-cceeeEEEEecCCCCC
Q 032030 45 DLLLCESGGDNLA----AN----FS--RELADYIIYIIDVSGGD-KI---P---R---KGGPG-ITQADLLVINKTDLAS 103 (148)
Q Consensus 45 D~IliEtsG~~~~----~~----~~--~~~~d~~i~vvDa~~~~-~~---~---~---~~~~q-i~~ADivViNK~DL~~ 103 (148)
.+.++.|.|.... .. +. -..+|.+++|+|+.... .. . . ...+. ....-++|+||+|+.+
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 7789999996310 01 11 12478899999998762 11 0 0 01111 1122599999999987
Q ss_pred chhhhHHHHH-HHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 104 AIGADLAVME-RDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 104 ~~~~~l~~~~-~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
. ....... ...++. ...+++++||+++.|+++++++++.
T Consensus 129 ~--~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 129 E--EELFELLKELLKEL-WGKPVFPISALTGEGLDELLRKLAE 168 (170)
T ss_pred c--hhhHHHHHHHHhhC-CCCCEEEEecCCCCCHHHHHHHHHh
Confidence 6 5544333 333332 3468999999999999999998764
No 45
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.33 E-value=5.4e-06 Score=60.32 Aligned_cols=102 Identities=19% Similarity=0.170 Sum_probs=66.7
Q ss_pred CCCEEEEecCCceee----e----eec--cccCceEEEEEeCCCCC-----C-cc-------cc--CCCC------ccee
Q 032030 43 KADLLLCESGGDNLA----A----NFS--RELADYIIYIIDVSGGD-----K-IP-------RK--GGPG------ITQA 91 (148)
Q Consensus 43 ~~D~IliEtsG~~~~----~----~~~--~~~~d~~i~vvDa~~~~-----~-~~-------~~--~~~q------i~~A 91 (148)
+..+.++.|.|.... . .+. -..+|.++.|+|+.... . .. .. .... ....
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP 122 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence 567889999996321 1 111 13478899999998763 1 10 00 1110 1233
Q ss_pred eEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 92 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
.++|+||+|+.+. .................+++++||+++.|++++++++.+.
T Consensus 123 ~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 123 VIYVLNKIDLDDA--EELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred eEEEEEchhcCch--hHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 7999999999877 5554442223334456789999999999999999988764
No 46
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.32 E-value=2.3e-06 Score=62.95 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=62.1
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc-------ccC-C---CCcceeeEEEEecCCCCCchhhh
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP-------RKG-G---PGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~-------~~~-~---~qi~~ADivViNK~DL~~~~~~~ 108 (148)
+..+.++++.|..-..... -..+|.+++|+|......+. ... . ...+ -++|.||+|+... ..
T Consensus 42 ~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~NK~Dl~~~--~~ 117 (169)
T cd04158 42 NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL--LLIFANKQDVAGA--LS 117 (169)
T ss_pred CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCC--EEEEEeCcCcccC--CC
Confidence 4667788888864221111 13578899999987653210 001 1 1223 5899999999765 44
Q ss_pred HHHHHHHHHhcC--C--CCcEEEEEecCCCCHHHHHHhhh
Q 032030 109 LAVMERDALRMR--D--GGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 109 l~~~~~~i~~~n--p--~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+.+.+.++..+ . ..+++++||++|.|++++|++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~ 157 (169)
T cd04158 118 VEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLS 157 (169)
T ss_pred HHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHH
Confidence 455655553111 1 23678899999999999999975
No 47
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.32 E-value=2.2e-06 Score=61.53 Aligned_cols=99 Identities=16% Similarity=0.066 Sum_probs=61.2
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCcc--c---cC-CCCcceeeEEEEecCCCCCchhhhH----H
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIP--R---KG-GPGITQADLLVINKTDLASAIGADL----A 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~--~---~~-~~qi~~ADivViNK~DL~~~~~~~l----~ 110 (148)
..+.++.|.|.--. ... .-..+|.+++|+|+..+.... . .. ....+ --++++||+|+.++ ... +
T Consensus 51 ~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~-~~ilv~NK~Dl~~~--~~~~~~~~ 127 (164)
T cd04171 51 KRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIK-RGLVVLTKADLVDE--DWLELVEE 127 (164)
T ss_pred cEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCC-cEEEEEECccccCH--HHHHHHHH
Confidence 45677788885211 000 113578999999987642110 0 00 00110 25799999999876 433 3
Q ss_pred HHHHHHHhcC-CCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMR-DGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~n-p~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
++.+.++... ...+++++||++|.|++++++++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 128 EIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 4445554321 3579999999999999999988753
No 48
>PRK12289 GTPase RsgA; Reviewed
Probab=98.32 E-value=4.9e-06 Score=69.13 Aligned_cols=75 Identities=24% Similarity=0.244 Sum_probs=53.2
Q ss_pred cCceEEEEEeCCCCCCcc----cc----CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 032030 64 LADYIIYIIDVSGGDKIP----RK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIG 135 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~----~~----~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~g 135 (148)
.+|.++.|+|+.+.+--+ .. ....++ -++|+||+||+++ .+++...+.++. .+.+++++||++|.|
T Consensus 89 NvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip--~ILVlNK~DLv~~--~~~~~~~~~~~~--~g~~v~~iSA~tg~G 162 (352)
T PRK12289 89 NADQILLVFALAEPPLDPWQLSRFLVKAESTGLE--IVLCLNKADLVSP--TEQQQWQDRLQQ--WGYQPLFISVETGIG 162 (352)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC--EEEEEEchhcCCh--HHHHHHHHHHHh--cCCeEEEEEcCCCCC
Confidence 468889999987543111 11 112344 5999999999987 666666566654 345799999999999
Q ss_pred HHHHHHhhh
Q 032030 136 IIFTLSITH 144 (148)
Q Consensus 136 i~~l~~~~~ 144 (148)
+++|++++.
T Consensus 163 I~eL~~~L~ 171 (352)
T PRK12289 163 LEALLEQLR 171 (352)
T ss_pred HHHHhhhhc
Confidence 999998764
No 49
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.32 E-value=2.2e-06 Score=63.03 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=61.1
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc-------ccc----CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI-------PRK----GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~-------~~~----~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+.++++.|.-....+. -..+|.+++|+|+...... ... .....+ -++|+||+|+... ...
T Consensus 58 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--~iiv~nK~Dl~~~--~~~ 133 (173)
T cd04154 58 YKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT--LLILANKQDLPGA--LSE 133 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC--EEEEEECcccccC--CCH
Confidence 445667777742110010 1257888999998765221 010 012344 6899999999865 444
Q ss_pred HHHHHHHHhc---CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~---np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.+.+.++.. ....+++++||++|.|++++++++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 134 EEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred HHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 5555555422 2456899999999999999999864
No 50
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.32 E-value=1.6e-06 Score=62.73 Aligned_cols=98 Identities=16% Similarity=0.124 Sum_probs=61.9
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc-------ccc-C---CCCcceeeEEEEecCCCCCchhhh
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI-------PRK-G---GPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~-------~~~-~---~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
+..+.++++.|.--....+ -..+|.+++|+|+...... ... . ..+.+ -++|+||+|+.+. ..
T Consensus 42 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p--iiiv~nK~Dl~~~--~~ 117 (158)
T cd04151 42 NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAV--LLVFANKQDMPGA--LS 117 (158)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCc--EEEEEeCCCCCCC--CC
Confidence 4667788888863211111 1357889999998764211 100 0 12344 6999999999765 33
Q ss_pred HHHHHHHHHhcC---CCCcEEEEEecCCCCHHHHHHhhh
Q 032030 109 LAVMERDALRMR---DGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 109 l~~~~~~i~~~n---p~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+++.+.+.... ...+++++||++|.|+++++++++
T Consensus 118 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 118 EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 344444442111 124799999999999999999874
No 51
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.31 E-value=3.5e-06 Score=61.90 Aligned_cols=99 Identities=18% Similarity=0.101 Sum_probs=61.9
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
++.+.++.|.|.--.... .-..+|.+++|+|+..+..... .....++ -++|+||+|+.+. .. ....
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~--iiiv~NK~Dl~~~--~~-~~~~ 140 (179)
T cd01890 66 EYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLE--IIPVINKIDLPSA--DP-ERVK 140 (179)
T ss_pred cEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCC--EEEEEECCCCCcC--CH-HHHH
Confidence 566778899996421000 1135788999999987543111 1112344 6999999999654 21 1222
Q ss_pred HHHHhc-C-CCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 114 RDALRM-R-DGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 114 ~~i~~~-n-p~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
+.+.+. . +..+++++||++|.|++++++++...
T Consensus 141 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 141 QQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred HHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhh
Confidence 222222 2 33469999999999999999998754
No 52
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.29 E-value=2.1e-06 Score=63.36 Aligned_cols=97 Identities=18% Similarity=0.136 Sum_probs=59.7
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc-------ccCC----CCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP-------RKGG----PGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~-------~~~~----~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+.+.++.|..-..... -..+|.+++|+|+....... .... ...+ -++|.||+|+... ...
T Consensus 53 ~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~NK~Dl~~~--~~~ 128 (168)
T cd04149 53 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL--LLVFANKQDLPDA--MKP 128 (168)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc--EEEEEECcCCccC--CCH
Confidence 445666777753111111 13578899999988743211 0111 1233 6899999999754 333
Q ss_pred HHHHHHHH--hcC-CCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDAL--RMR-DGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~--~~n-p~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+++.+.++ ..+ ...+++++||++|.|++++|+++.
T Consensus 129 ~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 129 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred HHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 45555543 112 234789999999999999999874
No 53
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.27 E-value=3.5e-06 Score=60.66 Aligned_cols=99 Identities=17% Similarity=0.127 Sum_probs=66.0
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------c-cCCCCcceeeEEEEecCCCCCchhhh
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------R-KGGPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~-~~~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
+..+.++++.|.-....+. -..+|.+++|+|+....... . ......+ -+++.||+|+... ..
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p--iiiv~nK~D~~~~--~~ 117 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP--LLIFANKQDLPGA--LS 117 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc--EEEEeeccCCccc--cC
Confidence 4678888888863211111 13568899999998763210 0 0112344 5888999999876 55
Q ss_pred HHHHHHHHHhc---CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 109 LAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 109 l~~~~~~i~~~---np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+.+.+.++.. ....+++++||++|.|++++++++..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 118 VSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 55666665532 23458999999999999999998763
No 54
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.26 E-value=4e-06 Score=63.04 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=50.5
Q ss_pred ccCceEEEEEeCCCCCC-cc-cc--CCCCcceeeEEEEecCCCCCchhhh-HHHHHHHH-----HhcC-CCCcEEEEEec
Q 032030 63 ELADYIIYIIDVSGGDK-IP-RK--GGPGITQADLLVINKTDLASAIGAD-LAVMERDA-----LRMR-DGGPFIFAQVG 131 (148)
Q Consensus 63 ~~~d~~i~vvDa~~~~~-~~-~~--~~~qi~~ADivViNK~DL~~~~~~~-l~~~~~~i-----~~~n-p~a~vi~tSa~ 131 (148)
..+|.++.|+|+...+. .. .. .....+ -++|+||+|+.+. .. .+.+..+. +..+ +..+++++||+
T Consensus 33 ~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~--~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~ 108 (190)
T cd01855 33 PKKALVVHVVDIFDFPGSLIPRLRLFGGNNP--VILVGNKIDLLPK--DKNLVRIKNWLRAKAAAGLGLKPKDVILISAK 108 (190)
T ss_pred cCCcEEEEEEECccCCCccchhHHHhcCCCc--EEEEEEchhcCCC--CCCHHHHHHHHHHHHHhhcCCCcccEEEEECC
Confidence 45788999999976542 11 11 112233 5899999999865 32 22233322 2222 23479999999
Q ss_pred CCCCHHHHHHhhh
Q 032030 132 WVIGIIFTLSITH 144 (148)
Q Consensus 132 ~g~gi~~l~~~~~ 144 (148)
+|.|+++|++++.
T Consensus 109 ~~~gi~eL~~~l~ 121 (190)
T cd01855 109 KGWGVEELINAIK 121 (190)
T ss_pred CCCCHHHHHHHHH
Confidence 9999999998875
No 55
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.25 E-value=7.4e-06 Score=60.82 Aligned_cols=76 Identities=18% Similarity=0.093 Sum_probs=50.7
Q ss_pred cCceEEEEEeCCCCCCccc--c--CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 64 LADYIIYIIDVSGGDKIPR--K--GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~--~--~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
.+|.+++|+|+..+..... . .....+ .++|+||+|+.++ .......+.++.. ..+++.+||+++.|+++|
T Consensus 19 ~aD~il~v~D~~~~~~~~~~~i~~~~~~k~--~ilVlNK~Dl~~~--~~~~~~~~~~~~~--~~~vi~iSa~~~~gi~~L 92 (171)
T cd01856 19 LVDLVIEVRDARIPLSSRNPLLEKILGNKP--RIIVLNKADLADP--KKTKKWLKYFESK--GEKVLFVNAKSGKGVKKL 92 (171)
T ss_pred hCCEEEEEeeccCccCcCChhhHhHhcCCC--EEEEEehhhcCCh--HHHHHHHHHHHhc--CCeEEEEECCCcccHHHH
Confidence 5688889999876532110 0 001222 6999999999866 5544443444432 357899999999999999
Q ss_pred HHhhhh
Q 032030 140 LSITHY 145 (148)
Q Consensus 140 ~~~~~~ 145 (148)
.+.+..
T Consensus 93 ~~~l~~ 98 (171)
T cd01856 93 LKAAKK 98 (171)
T ss_pred HHHHHH
Confidence 887653
No 56
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.24 E-value=3.6e-06 Score=61.46 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=58.4
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc-------ccCC----CCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP-------RKGG----PGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~-------~~~~----~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.+.++.|......+. -..+|.+++|+|+.....+. .... .+.+ -+++.||+|+.+. ...
T Consensus 44 ~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~NK~Dl~~~--~~~ 119 (159)
T cd04150 44 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV--LLVFANKQDLPNA--MSA 119 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCC--EEEEEECCCCCCC--CCH
Confidence 445666777743211111 13578899999997643210 1111 1344 4899999999754 333
Q ss_pred HHHHHHHH--hc-CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDAL--RM-RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~--~~-np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+++.+.+. .. +....++++||++|.|++++|++++
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 120 AEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred HHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 34444442 11 2334678999999999999999874
No 57
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.23 E-value=2.6e-06 Score=64.97 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=61.1
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCC-CCcc------ccCCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGG-DKIP------RKGGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~-~~~~------~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
.-+.|+.|.|.... ... .-..+|.++.|+|+..+ ...+ ......++ .-++|+||+|+.+. .+.....
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~-~iiivvNK~Dl~~~--~~~~~~~ 159 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLK-HIIIVQNKIDLVKE--EQALENY 159 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCC-cEEEEEEchhccCH--HHHHHHH
Confidence 44789999995311 111 11346899999999864 1111 00001121 14779999999876 5444333
Q ss_pred HHHHhc-----CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 114 RDALRM-----RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 114 ~~i~~~-----np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.+++. ....+++++||++|.|+++|++++.
T Consensus 160 ~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~ 195 (203)
T cd01888 160 EQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIV 195 (203)
T ss_pred HHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHH
Confidence 333322 2357899999999999999998874
No 58
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.23 E-value=4.1e-06 Score=57.76 Aligned_cols=98 Identities=22% Similarity=0.217 Sum_probs=66.2
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc-----------ccCCCCcceeeEEEEecCCCCCchhhh
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP-----------RKGGPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~-----------~~~~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
+.++.++++.|....... .....|.+++++|+....... .......+ -++++||+|+.+. ..
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ivv~nk~D~~~~--~~ 119 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIP--IILVGNKIDLPEE--RV 119 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCc--EEEEEeccccccc--cc
Confidence 567889999996532111 124578899999998764211 11122344 6999999999877 44
Q ss_pred HHHHH-HHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 109 LAVME-RDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 109 l~~~~-~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+... .......+..+++++|++++.|++++++++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 120 VSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 43321 2233345678999999999999999999863
No 59
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.22 E-value=7.5e-06 Score=58.25 Aligned_cols=94 Identities=21% Similarity=0.191 Sum_probs=61.8
Q ss_pred CCCEEEEecCCceeeee-----e------ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCch
Q 032030 43 KADLLLCESGGDNLAAN-----F------SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAI 105 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~-----~------~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~ 105 (148)
+..+.++.|.|..-... + .-..+|.+++|+|+.++..... ......+ -++|+||+|+.+.
T Consensus 44 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p--iiiv~nK~D~~~~- 120 (157)
T cd01894 44 GREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP--VILVVNKVDNIKE- 120 (157)
T ss_pred CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCC--EEEEEECcccCCh-
Confidence 56788999999753111 1 1135788999999876532211 0011233 5999999999876
Q ss_pred hhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 106 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 106 ~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
... .+.+... ...+++++|+++|.|++++++++.
T Consensus 121 -~~~---~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (157)
T cd01894 121 -EDE---AAEFYSL-GFGEPIPISAEHGRGIGDLLDAIL 154 (157)
T ss_pred -HHH---HHHHHhc-CCCCeEEEecccCCCHHHHHHHHH
Confidence 443 2333333 234789999999999999999864
No 60
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.21 E-value=1.5e-05 Score=62.89 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=50.8
Q ss_pred cCceEEEEEeCCCCCC-c---ccc----CCCCcceeeEEEEecCCCCCchhhhHH-HHHHHHHhcCCCCcEEEEEecCCC
Q 032030 64 LADYIIYIIDVSGGDK-I---PRK----GGPGITQADLLVINKTDLASAIGADLA-VMERDALRMRDGGPFIFAQVGWVI 134 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~-~---~~~----~~~qi~~ADivViNK~DL~~~~~~~l~-~~~~~i~~~np~a~vi~tSa~~g~ 134 (148)
.+|.++.|.|+..... . ... ....++ -++|+||+||.+. .+.. +..+.+++ .+.+++.+||++|.
T Consensus 36 n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~--~vIV~NK~DL~~~--~~~~~~~~~~~~~--~g~~v~~~SAktg~ 109 (245)
T TIGR00157 36 NIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIE--PIIVLNKIDLLDD--EDMEKEQLDIYRN--IGYQVLMTSSKNQD 109 (245)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC--EEEEEECcccCCC--HHHHHHHHHHHHH--CCCeEEEEecCCch
Confidence 4577899999876542 1 111 112344 4899999999875 4432 33344443 34689999999999
Q ss_pred CHHHHHHhhh
Q 032030 135 GIIFTLSITH 144 (148)
Q Consensus 135 gi~~l~~~~~ 144 (148)
|++++++.+.
T Consensus 110 gi~eLf~~l~ 119 (245)
T TIGR00157 110 GLKELIEALQ 119 (245)
T ss_pred hHHHHHhhhc
Confidence 9999998764
No 61
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.21 E-value=4.1e-06 Score=60.30 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=59.9
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCcc-------ccCC----CCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIP-------RKGG----PGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~-------~~~~----~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.+.++.|.... ... .-..+|.+++|+|+.+...+. .... ...+ -++|+||+|+.+. ...
T Consensus 44 ~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~ 119 (160)
T cd04156 44 LSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP--VVLLANKQDLPGA--LTA 119 (160)
T ss_pred eEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCC--EEEEEECcccccC--cCH
Confidence 55677777775321 100 013478899999997754211 0001 2344 7999999999754 333
Q ss_pred HHHHHHHH--hcC--CCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDAL--RMR--DGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~--~~n--p~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.+...++ +.. +..+++++||++|.|+++++++++
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 120 EEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred HHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence 34443332 111 234789999999999999999874
No 62
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.20 E-value=3.3e-06 Score=72.44 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=63.0
Q ss_pred CEEEEecCCceee-eee--ccccCceEEEEEeCCCC-CCccc-cC-----CCCcceeeEEEEecCCCCCchhhhHHHHHH
Q 032030 45 DLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGG-DKIPR-KG-----GPGITQADLLVINKTDLASAIGADLAVMER 114 (148)
Q Consensus 45 D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~-~~~~~-~~-----~~qi~~ADivViNK~DL~~~~~~~l~~~~~ 114 (148)
-+.||.+.|-... .+. .-...|..+.|+|+.++ ...+. .+ .-.++ --++++||+|+++. +++++..+
T Consensus 118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~-~iIVvlNKiDlv~~--~~~~~~~~ 194 (460)
T PTZ00327 118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLK-HIIILQNKIDLVKE--AQAQDQYE 194 (460)
T ss_pred eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCC-cEEEEEecccccCH--HHHHHHHH
Confidence 4688999995311 111 11357999999999875 22111 00 01122 13789999999986 55544444
Q ss_pred HHHhc-----CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 115 DALRM-----RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 115 ~i~~~-----np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+++. ....+++++||++|.|+++|++.+.
T Consensus 195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~ 229 (460)
T PTZ00327 195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYIC 229 (460)
T ss_pred HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 44332 2568999999999999999999876
No 63
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.20 E-value=1.3e-05 Score=57.81 Aligned_cols=97 Identities=19% Similarity=0.137 Sum_probs=68.9
Q ss_pred CEEEEecCCceee-----eee--ccccCceEEEEEeCCCCCC-ccccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHH
Q 032030 45 DLLLCESGGDNLA-----ANF--SRELADYIIYIIDVSGGDK-IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDA 116 (148)
Q Consensus 45 D~IliEtsG~~~~-----~~~--~~~~~d~~i~vvDa~~~~~-~~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i 116 (148)
|.-.|.|.|--.. ..+ ....+|.++.|-.+.++.. ++-.+...+..-.|-|++|+||++. ++++..++++
T Consensus 38 d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLaed--~dI~~~~~~L 115 (148)
T COG4917 38 DKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLAED--ADISLVKRWL 115 (148)
T ss_pred CccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCcccccccccceEEEEecccccch--HhHHHHHHHH
Confidence 5556778886321 001 1245677777777766543 2222222222227889999999988 9999999999
Q ss_pred HhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 117 LRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 117 ~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
++.. ..+||.+|+....|+++|+++++
T Consensus 116 ~eaG-a~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 116 REAG-AEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred HHcC-CcceEEEeccCcccHHHHHHHHH
Confidence 9876 56999999999999999999876
No 64
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.18 E-value=6.8e-06 Score=70.48 Aligned_cols=78 Identities=18% Similarity=0.046 Sum_probs=53.7
Q ss_pred cCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHh---cCCCCcEEEEEecCCC
Q 032030 64 LADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVMERDALR---MRDGGPFIFAQVGWVI 134 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~---~np~a~vi~tSa~~g~ 134 (148)
.+|.++.|+|+..+...+. ......+ -++|+||+||.++ .....+.+.+++ ..+.+|++++||++|.
T Consensus 293 ~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~p--iIiV~NK~Dl~~~--~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~ 368 (472)
T PRK03003 293 AAEVAVVLIDASEPISEQDQRVLSMVIEAGRA--LVLAFNKWDLVDE--DRRYYLEREIDRELAQVPWAPRVNISAKTGR 368 (472)
T ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC--EEEEEECcccCCh--hHHHHHHHHHHHhcccCCCCCEEEEECCCCC
Confidence 5788999999987643211 1112233 6999999999875 444344444432 1246899999999999
Q ss_pred CHHHHHHhhhh
Q 032030 135 GIIFTLSITHY 145 (148)
Q Consensus 135 gi~~l~~~~~~ 145 (148)
|++++++.++-
T Consensus 369 gv~~lf~~i~~ 379 (472)
T PRK03003 369 AVDKLVPALET 379 (472)
T ss_pred CHHHHHHHHHH
Confidence 99999988753
No 65
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.17 E-value=8.5e-06 Score=72.18 Aligned_cols=80 Identities=13% Similarity=0.034 Sum_probs=54.1
Q ss_pred cCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHH----hcC-CCCcEEEEEecC
Q 032030 64 LADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVMERDAL----RMR-DGGPFIFAQVGW 132 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~----~~n-p~a~vi~tSa~~ 132 (148)
..|..++|+|+.++..-+. .....++. -++|+||+|++++ +.++.+.+.++ ..+ ...+++++||++
T Consensus 74 ~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~-iIVVlNKiDlv~~--~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 74 GIDHALLVVACDDGVMAQTREHLAILQLTGNPM-LTVALTKADRVDE--ARIAEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCe-EEEEEECCccCCH--HHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 5788999999987643111 00011220 2689999999986 65554444443 322 357999999999
Q ss_pred CCCHHHHHHhhhhh
Q 032030 133 VIGIIFTLSITHYI 146 (148)
Q Consensus 133 g~gi~~l~~~~~~~ 146 (148)
|.|+++|++++.-+
T Consensus 151 G~gI~~L~~~L~~~ 164 (614)
T PRK10512 151 GRGIDALREHLLQL 164 (614)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999987643
No 66
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.16 E-value=5.8e-06 Score=59.10 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=63.5
Q ss_pred CCCEEEEecCCceeee----------eec-cccCceEEEEEeCCCCCCcccc----CCCCcceeeEEEEecCCCCCchhh
Q 032030 43 KADLLLCESGGDNLAA----------NFS-RELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGA 107 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~----------~~~-~~~~d~~i~vvDa~~~~~~~~~----~~~qi~~ADivViNK~DL~~~~~~ 107 (148)
+.++.++.|.|..... .+. ....|.++.|+|+...+..... .....+ -++|+||+|+.+. .
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~--~iiv~NK~Dl~~~--~ 117 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLELGLP--VVVALNMIDEAEK--R 117 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHcCCC--EEEEEehhhhccc--c
Confidence 4678999999974211 111 1367889999999875432111 111233 6999999999876 4
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 108 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 108 ~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
....-.+.+... .+.+++++||.+|.|++++++++.-
T Consensus 118 ~~~~~~~~~~~~-~~~~~~~iSa~~~~~~~~l~~~l~~ 154 (158)
T cd01879 118 GIKIDLDKLSEL-LGVPVVPTSARKGEGIDELKDAIAE 154 (158)
T ss_pred cchhhHHHHHHh-hCCCeEEEEccCCCCHHHHHHHHHH
Confidence 332222233222 2368999999999999999988754
No 67
>PTZ00099 rab6; Provisional
Probab=98.15 E-value=5.1e-06 Score=62.29 Aligned_cols=98 Identities=16% Similarity=0.079 Sum_probs=62.1
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCc-------ccc---CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKI-------PRK---GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~-------~~~---~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
.+.+.|..|.|.--...+ .-..+|.+++|+|......+ ... ....++ -++|.||+||.+.-....
T Consensus 28 ~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~p--iilVgNK~DL~~~~~v~~ 105 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVI--IALVGNKTDLGDLRKVTY 105 (176)
T ss_pred EEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe--EEEEEECcccccccCCCH
Confidence 577888999996321111 11468999999998774321 111 111222 479999999965300122
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+......+.. ..+++++||++|.|++++|++++
T Consensus 106 ~e~~~~~~~~--~~~~~e~SAk~g~nV~~lf~~l~ 138 (176)
T PTZ00099 106 EEGMQKAQEY--NTMFHETSAKAGHNIKVLFKKIA 138 (176)
T ss_pred HHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHH
Confidence 3344444433 34689999999999999999876
No 68
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.14 E-value=7.6e-06 Score=60.49 Aligned_cols=98 Identities=17% Similarity=0.110 Sum_probs=60.7
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccc-------cC-C---CCcceeeEEEEecCCCCCchhhh
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPR-------KG-G---PGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~-------~~-~---~qi~~ADivViNK~DL~~~~~~~ 108 (148)
+..+.++++.|..-. ... .-..+|.+++|+|+...+.... .. . ...+ -++++||+|+... ..
T Consensus 58 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p--~viv~NK~Dl~~~--~~ 133 (174)
T cd04153 58 NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV--LLVLANKQDLKGA--MT 133 (174)
T ss_pred CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC--EEEEEECCCCCCC--CC
Confidence 345677778875311 110 0135788999999986543210 00 1 1233 5999999999764 33
Q ss_pred HHHHHHHHHh---cCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 109 LAVMERDALR---MRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 109 l~~~~~~i~~---~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+.+.+.+.. .+...+++++||++|.|+++++++++
T Consensus 134 ~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 134 PAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred HHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHh
Confidence 3444444421 12334799999999999999999875
No 69
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.13 E-value=3.1e-06 Score=63.36 Aligned_cols=98 Identities=14% Similarity=0.074 Sum_probs=61.4
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc-------ccCC----CCcceeeEEEEecCCCCCchhhh
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP-------RKGG----PGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~-------~~~~----~qi~~ADivViNK~DL~~~~~~~ 108 (148)
++.+.++++.|....... .-..+|.+++|+|+...+.+. .... ...+ -++|+||+|+... -.
T Consensus 60 ~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p--iliv~NK~Dl~~~--~~ 135 (184)
T smart00178 60 NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP--FLILGNKIDAPYA--AS 135 (184)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC--EEEEEeCccccCC--CC
Confidence 345567777775321111 113578899999997653211 0111 2333 7999999999654 33
Q ss_pred HHHHHHHHHhc----------CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 109 LAVMERDALRM----------RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 109 l~~~~~~i~~~----------np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+++++.+.-. .+...++++||++|.|++++++|+.
T Consensus 136 ~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~ 181 (184)
T smart00178 136 EDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLS 181 (184)
T ss_pred HHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHH
Confidence 44555555211 1344699999999999999999984
No 70
>PRK04213 GTP-binding protein; Provisional
Probab=98.13 E-value=1.1e-05 Score=60.63 Aligned_cols=97 Identities=14% Similarity=0.044 Sum_probs=57.7
Q ss_pred CEEEEecCCceeee--------ee-------cc---ccCceEEEEEeCCCCCCcc-c---------------c-CCCCcc
Q 032030 45 DLLLCESGGDNLAA--------NF-------SR---ELADYIIYIIDVSGGDKIP-R---------------K-GGPGIT 89 (148)
Q Consensus 45 D~IliEtsG~~~~~--------~~-------~~---~~~d~~i~vvDa~~~~~~~-~---------------~-~~~qi~ 89 (148)
++.++.|.|.+... .+ .. ..++.++.|+|+....... . . ....++
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 68899999963211 01 01 2346788999986542210 0 0 012344
Q ss_pred eeeEEEEecCCCCCchhhhHHHHHHHHHhcCC----CCcEEEEEecCCCCHHHHHHhhh
Q 032030 90 QADLLVINKTDLASAIGADLAVMERDALRMRD----GGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 90 ~ADivViNK~DL~~~~~~~l~~~~~~i~~~np----~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
-++|+||+|+.+......+++.+.+....+ ..+++++||++| |++++++++.
T Consensus 133 --~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~ 188 (201)
T PRK04213 133 --PIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIR 188 (201)
T ss_pred --eEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHH
Confidence 499999999976511133334333321001 236899999999 9999999875
No 71
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.12 E-value=7.4e-06 Score=61.87 Aligned_cols=93 Identities=22% Similarity=0.193 Sum_probs=61.6
Q ss_pred CCEEEEecCCcee--e----eeec-----cccCceEEEEEeCCCCCCccc------c---C-CCCcceeeEEEEecCCCC
Q 032030 44 ADLLLCESGGDNL--A----ANFS-----RELADYIIYIIDVSGGDKIPR------K---G-GPGITQADLLVINKTDLA 102 (148)
Q Consensus 44 ~D~IliEtsG~~~--~----~~~~-----~~~~d~~i~vvDa~~~~~~~~------~---~-~~qi~~ADivViNK~DL~ 102 (148)
..+.+++|.|..- . ..+. -..+|.+++|+|+........ . . ....+ -++|+||+|+.
T Consensus 89 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~--viiV~NK~Dl~ 166 (204)
T cd01878 89 REVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP--MILVLNKIDLL 166 (204)
T ss_pred ceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC--EEEEEEccccC
Confidence 3788899999631 0 1110 124688999999976543211 0 0 01222 59999999998
Q ss_pred CchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 103 SAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 103 ~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+. .... +..+ ....+++++||++|.|++++++++..
T Consensus 167 ~~--~~~~---~~~~--~~~~~~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 167 DD--EELE---ERLE--AGRPDAVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred Ch--HHHH---HHhh--cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 76 5433 3333 34568999999999999999998865
No 72
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.11 E-value=1.2e-05 Score=59.89 Aligned_cols=77 Identities=14% Similarity=0.065 Sum_probs=52.0
Q ss_pred cCceEEEEEeCCCCCCcc-------ccC----CCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcC------------
Q 032030 64 LADYIIYIIDVSGGDKIP-------RKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMR------------ 120 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~-------~~~----~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~n------------ 120 (148)
.+|.+++++|+.+...+. ... ....+ -++++||+|+... ...+.+++.++...
T Consensus 86 ~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p--vivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T cd00879 86 EVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP--FLILGNKIDLPGA--VSEEELRQALGLYGTTTGKGVSLKVS 161 (190)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC--EEEEEeCCCCCCC--cCHHHHHHHhCccccccccccccccc
Confidence 467889999987642210 000 11233 6899999999765 44556666664211
Q ss_pred --CCCcEEEEEecCCCCHHHHHHhhh
Q 032030 121 --DGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 121 --p~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+++++||++|.|++++|++++
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~e~~~~l~ 187 (190)
T cd00879 162 GIRPIEVFMCSVVKRQGYGEAFRWLS 187 (190)
T ss_pred CceeEEEEEeEecCCCChHHHHHHHH
Confidence 124689999999999999999975
No 73
>PRK09866 hypothetical protein; Provisional
Probab=98.11 E-value=1.5e-05 Score=70.83 Aligned_cols=100 Identities=13% Similarity=0.062 Sum_probs=64.9
Q ss_pred CCCEEEEecCCceeee-e-ec------cccCceEEEEEeCCCCCC-----ccc---cCCCCcceeeEEEEecCCCCCchh
Q 032030 43 KADLLLCESGGDNLAA-N-FS------RELADYIIYIIDVSGGDK-----IPR---KGGPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~-~-~~------~~~~d~~i~vvDa~~~~~-----~~~---~~~~qi~~ADivViNK~DL~~~~~ 106 (148)
...+||+-|.|+--+. . +. -..+|.+++|+|+..+.. +.. ....+.+ -++|+||+|+.+..+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~P--VILVVNKIDl~dree 306 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVP--LYVLVNKFDQQDRNS 306 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCC--EEEEEEcccCCCccc
Confidence 4677888888874321 1 11 135799999999977422 111 1111124 689999999986411
Q ss_pred hhHHHHHHHHH-----hcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 ADLAVMERDAL-----RMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 ~~l~~~~~~i~-----~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+.+.+.++ ...+..+|+++||++|.|+++|++.+.
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~ 349 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELA 349 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHH
Confidence 22444555443 233678999999999999999998775
No 74
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.10 E-value=1.6e-05 Score=57.20 Aligned_cols=99 Identities=16% Similarity=0.059 Sum_probs=61.9
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc---------cCCCCcceeeEEEEecCCCCCchhhhHHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLAV 111 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~---------~~~~qi~~ADivViNK~DL~~~~~~~l~~ 111 (148)
..+.++++.|.--.... .-..+|.+++++|......... .+...-...-++|+||+|+.... ...+.
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-~~~~~ 127 (161)
T cd01863 49 VKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE-VTREE 127 (161)
T ss_pred EEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc-cCHHH
Confidence 55677788885311111 0135788999999876532110 11111122269999999997430 23344
Q ss_pred HHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 112 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 112 ~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
..+..+.. ..+++++||++|.|++++++.+..
T Consensus 128 ~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 128 GLKFARKH--NMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred HHHHHHHc--CCEEEEEecCCCCCHHHHHHHHHH
Confidence 55555543 578999999999999999998754
No 75
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.10 E-value=1.1e-05 Score=60.45 Aligned_cols=78 Identities=17% Similarity=0.073 Sum_probs=52.0
Q ss_pred cCceEEEEEeCCCCCCcc-------ccC-C---CCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcC--CC-CcEEEEE
Q 032030 64 LADYIIYIIDVSGGDKIP-------RKG-G---PGITQADLLVINKTDLASAIGADLAVMERDALRMR--DG-GPFIFAQ 129 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~-------~~~-~---~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~n--p~-a~vi~tS 129 (148)
.+|.+|+|+|+...+.+. ... . +..+ -+|+.||+|+... ...+.+.+.+.-.+ +. -.++++|
T Consensus 84 ~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~p--iilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~S 159 (181)
T PLN00223 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV--LLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCC--EEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEecc
Confidence 468889999998654321 111 1 1233 5889999999876 55556666553211 21 2456899
Q ss_pred ecCCCCHHHHHHhhhh
Q 032030 130 VGWVIGIIFTLSITHY 145 (148)
Q Consensus 130 a~~g~gi~~l~~~~~~ 145 (148)
|++|+|++++++|++-
T Consensus 160 a~~g~gv~e~~~~l~~ 175 (181)
T PLN00223 160 ATSGEGLYEGLDWLSN 175 (181)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999999863
No 76
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.07 E-value=1.9e-05 Score=65.18 Aligned_cols=99 Identities=18% Similarity=0.239 Sum_probs=62.2
Q ss_pred CCEEEEecCCceee--------eeecc--ccCceEEEEEeCCCCCCc------cc---cCCCC-cceeeEEEEecCCCCC
Q 032030 44 ADLLLCESGGDNLA--------ANFSR--ELADYIIYIIDVSGGDKI------PR---KGGPG-ITQADLLVINKTDLAS 103 (148)
Q Consensus 44 ~D~IliEtsG~~~~--------~~~~~--~~~d~~i~vvDa~~~~~~------~~---~~~~q-i~~ADivViNK~DL~~ 103 (148)
..++++.+.|+... ..|.. +.++.+++|+|+...+.. .. .+.+. ....-++|+||+|+.+
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 45788889887321 11212 246788999998764311 00 11111 1233799999999987
Q ss_pred chhhhHH--HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 104 AIGADLA--VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 104 ~~~~~l~--~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
. .+.. ......+. ...+++++||+++.|++++++++.-.
T Consensus 286 ~--~~~~~~~~~~~~~~--~~~~i~~iSAktg~GI~eL~~~L~~~ 326 (335)
T PRK12299 286 E--EEEREKRAALELAA--LGGPVFLISAVTGEGLDELLRALWEL 326 (335)
T ss_pred c--hhHHHHHHHHHHHh--cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 6 4332 23233332 23689999999999999999988643
No 77
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.07 E-value=1.2e-05 Score=59.58 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=56.8
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc-------ccC-C---CCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP-------RKG-G---PGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~-------~~~-~---~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.+..+.|..-...++ -..+|.+++|+|+.....+. ... . ...+ -+||.||+||.+. ...
T Consensus 57 ~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p--iilv~NK~Dl~~~--~~~ 132 (175)
T smart00177 57 ISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV--ILVFANKQDLPDA--MKA 132 (175)
T ss_pred EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc--EEEEEeCcCcccC--CCH
Confidence 445566666642111111 13578899999987643211 010 1 1233 5899999999754 222
Q ss_pred HHHHHHHH--h-cCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDAL--R-MRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~--~-~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+++.+.+. . ......++++||++|.|++++++|+.
T Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 170 (175)
T smart00177 133 AEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLS 170 (175)
T ss_pred HHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHH
Confidence 33433332 1 11234577899999999999999874
No 78
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.07 E-value=9.1e-06 Score=60.69 Aligned_cols=100 Identities=17% Similarity=0.169 Sum_probs=60.6
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------cc-CCCCcceeeEEEEecCCCCCchhhh
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RK-GGPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~-~~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
+..+-+.++.|.-....++ -..+|.+++|+|+....... .. ....++ -++|+||+|+... ..
T Consensus 51 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p--~iiv~NK~D~~~~--~~ 126 (183)
T cd04152 51 GITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP--VLVLANKQDLPNA--LS 126 (183)
T ss_pred ceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc--EEEEEECcCcccc--CC
Confidence 3456667777742110111 13578899999987653210 00 112344 6999999999754 33
Q ss_pred HHHHHHHHH--hcC--CCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 109 LAVMERDAL--RMR--DGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 109 l~~~~~~i~--~~n--p~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
.+.+.+.+. +.. ...+++++||++|.|+++++++++-.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~ 168 (183)
T cd04152 127 VSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEM 168 (183)
T ss_pred HHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHH
Confidence 334443332 122 23568999999999999999998743
No 79
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.07 E-value=1.3e-05 Score=60.16 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=48.5
Q ss_pred cCceEEEEEeCCCCCCc-------cc---cCCCCcceeeEEEEecCCCCCchh-hh----HHHHHHHHHhcCCCCcEEEE
Q 032030 64 LADYIIYIIDVSGGDKI-------PR---KGGPGITQADLLVINKTDLASAIG-AD----LAVMERDALRMRDGGPFIFA 128 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~-------~~---~~~~qi~~ADivViNK~DL~~~~~-~~----l~~~~~~i~~~np~a~vi~t 128 (148)
.+|.+++++|..+.... .. ..+...+ ++|.||+||..... .+ .+...+..+..+ ++++++
T Consensus 72 ~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p---ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~e~ 146 (182)
T cd04128 72 DAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP---ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK--APLIFC 146 (182)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE---EEEEEchhccccccchhhhhhHHHHHHHHHHcC--CEEEEE
Confidence 56888999998765321 01 1122344 78999999963210 11 122233333333 789999
Q ss_pred EecCCCCHHHHHHhhh
Q 032030 129 QVGWVIGIIFTLSITH 144 (148)
Q Consensus 129 Sa~~g~gi~~l~~~~~ 144 (148)
||++|.|++++|++++
T Consensus 147 SAk~g~~v~~lf~~l~ 162 (182)
T cd04128 147 STSHSINVQKIFKIVL 162 (182)
T ss_pred eCCCCCCHHHHHHHHH
Confidence 9999999999999875
No 80
>PRK00098 GTPase RsgA; Reviewed
Probab=98.07 E-value=3.1e-05 Score=62.74 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=49.6
Q ss_pred cCceEEEEEeCCCCCCcc----c----cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 032030 64 LADYIIYIIDVSGGDKIP----R----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIG 135 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~----~----~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~g 135 (148)
.+|.++.|+|+...+... . .....++ -++|+||+||.+.. ...+...+.+++. +.+++++||++|.|
T Consensus 80 niD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip--~iIVlNK~DL~~~~-~~~~~~~~~~~~~--g~~v~~vSA~~g~g 154 (298)
T PRK00098 80 NVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIK--PIIVLNKIDLLDDL-EEARELLALYRAI--GYDVLELSAKEGEG 154 (298)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC--EEEEEEhHHcCCCH-HHHHHHHHHHHHC--CCeEEEEeCCCCcc
Confidence 357789999986543110 1 1122445 58999999997430 3333444445433 35899999999999
Q ss_pred HHHHHHhh
Q 032030 136 IIFTLSIT 143 (148)
Q Consensus 136 i~~l~~~~ 143 (148)
+++|++.+
T Consensus 155 i~~L~~~l 162 (298)
T PRK00098 155 LDELKPLL 162 (298)
T ss_pred HHHHHhhc
Confidence 99999875
No 81
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.05 E-value=1.5e-05 Score=58.20 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=50.7
Q ss_pred cCceEEEEEeCCCCCCcc-------cc----CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhc---CCCCcEEEEE
Q 032030 64 LADYIIYIIDVSGGDKIP-------RK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQ 129 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~-------~~----~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~---np~a~vi~tS 129 (148)
.+|.+++++|+.....+. .. ....++ -++++||+|+.+. ...+.+.+.++-. +...+++++|
T Consensus 81 ~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p--~ivv~nK~D~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~S 156 (173)
T cd04155 81 NTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP--VLVFANKQDLATA--APAEEIAEALNLHDLRDRTWHIQACS 156 (173)
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC--EEEEEECCCCccC--CCHHHHHHHcCCcccCCCeEEEEEeE
Confidence 467889999987632110 00 012344 6788999999876 5555555544311 1123578999
Q ss_pred ecCCCCHHHHHHhhh
Q 032030 130 VGWVIGIIFTLSITH 144 (148)
Q Consensus 130 a~~g~gi~~l~~~~~ 144 (148)
|++|+|++++++|++
T Consensus 157 a~~~~gi~~~~~~l~ 171 (173)
T cd04155 157 AKTGEGLQEGMNWVC 171 (173)
T ss_pred CCCCCCHHHHHHHHh
Confidence 999999999999974
No 82
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.05 E-value=2.1e-05 Score=63.01 Aligned_cols=76 Identities=18% Similarity=0.071 Sum_probs=51.7
Q ss_pred cCceEEEEEeCCCCCCcc--c--cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 64 LADYIIYIIDVSGGDKIP--R--KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~--~--~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
.+|.++.|+|+..+.... . ..-.+.+ -++|+||+||+++ .+.+...+.+++ ...+++++||+++.|+++|
T Consensus 21 ~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp--~IiVlNK~DL~~~--~~~~~~~~~~~~--~~~~vi~iSa~~~~gi~~L 94 (276)
T TIGR03596 21 LVDVVIEVLDARIPLSSRNPMIDEIRGNKP--RLIVLNKADLADP--AVTKQWLKYFEE--KGIKALAINAKKGKGVKKI 94 (276)
T ss_pred hCCEEEEEEeCCCCCCCCChhHHHHHCCCC--EEEEEEccccCCH--HHHHHHHHHHHH--cCCeEEEEECCCcccHHHH
Confidence 578889999987543211 0 0011223 5899999999876 555554445543 2357899999999999999
Q ss_pred HHhhhh
Q 032030 140 LSITHY 145 (148)
Q Consensus 140 ~~~~~~ 145 (148)
.+.+..
T Consensus 95 ~~~i~~ 100 (276)
T TIGR03596 95 IKAAKK 100 (276)
T ss_pred HHHHHH
Confidence 877653
No 83
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.05 E-value=1.5e-05 Score=71.54 Aligned_cols=100 Identities=17% Similarity=0.031 Sum_probs=66.1
Q ss_pred CCCEEEEecCCcee-------eeeec-------cccCceEEEEEeCCCCCCcccc--CC--CCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNL-------AANFS-------RELADYIIYIIDVSGGDKIPRK--GG--PGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~-------~~~~~-------~~~~d~~i~vvDa~~~~~~~~~--~~--~qi~~ADivViNK~DL~~~ 104 (148)
+.++.++.|.|.-- ...+. -..+|.+++|+|+..+...+.. .. ......-++|+||+||.+.
T Consensus 497 ~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 497 GEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred CCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 44677889999631 01110 0246889999999877432110 00 0011237999999999876
Q ss_pred hhhhHHHHHHHHHhc---CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 105 IGADLAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 105 ~~~~l~~~~~~i~~~---np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+.+.+.++.. .+.++++++||++|.|++++++.+.
T Consensus 577 --~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~ 617 (712)
T PRK09518 577 --FRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQ 617 (712)
T ss_pred --hHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 5555566555533 3578999999999999999998764
No 84
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.03 E-value=1.7e-05 Score=60.85 Aligned_cols=77 Identities=19% Similarity=0.081 Sum_probs=51.9
Q ss_pred cCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhH--HHHHHHHHhcCCCCcEEEEEec
Q 032030 64 LADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADL--AVMERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l--~~~~~~i~~~np~a~vi~tSa~ 131 (148)
.+|.+++|.|......+. ......++ -++|.||+||.+. .++ +...+..++ +.+.+++.|||+
T Consensus 72 ~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~p--iilVgNK~DL~~~--~~v~~~~~~~~a~~-~~~~~~~etSAk 146 (202)
T cd04120 72 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE--LLLVGNKLDCETD--REISRQQGEKFAQQ-ITGMRFCEASAK 146 (202)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc--EEEEEECcccccc--cccCHHHHHHHHHh-cCCCEEEEecCC
Confidence 578889999987653211 01122344 5899999999754 332 233333333 234689999999
Q ss_pred CCCCHHHHHHhhhh
Q 032030 132 WVIGIIFTLSITHY 145 (148)
Q Consensus 132 ~g~gi~~l~~~~~~ 145 (148)
+|.|++++|++++.
T Consensus 147 tg~gV~e~F~~l~~ 160 (202)
T cd04120 147 DNFNVDEIFLKLVD 160 (202)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999998874
No 85
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.02 E-value=1.7e-05 Score=58.25 Aligned_cols=98 Identities=11% Similarity=-0.026 Sum_probs=61.2
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCccc---------cCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~~---------~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
.+.+.+.+|.|.-....+. -..+|.+|+|+|......... .....++ -++|.||+|+... ....
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p--iiiv~nK~Dl~~~--~~~~ 123 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIP--IVLCGNKVDIKDR--KVKA 123 (166)
T ss_pred EEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc--EEEEEEchhcccc--cCCH
Confidence 3556677777753211111 134788899999876543211 0112344 5889999999744 3222
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
+..+..+ ....+++++||++|.|++++|++++..
T Consensus 124 ~~~~~~~--~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 124 KQITFHR--KKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred HHHHHHH--HcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 2223333 234689999999999999999998743
No 86
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.01 E-value=2.8e-05 Score=68.47 Aligned_cols=98 Identities=15% Similarity=0.071 Sum_probs=60.7
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHH-
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVME- 113 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~- 113 (148)
..+-++.+.|---. ... .-..+|..++|+|+.++...+. .....++. -++|+||+|++++ ..++.+.
T Consensus 50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~-iIVVlNK~Dlv~~--~~~~~~~~ 126 (581)
T TIGR00475 50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPH-TIVVITKADRVNE--EEIKRTEM 126 (581)
T ss_pred EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCe-EEEEEECCCCCCH--HHHHHHHH
Confidence 34567777774210 000 1135789999999988642110 00011221 4899999999987 6554433
Q ss_pred ---HHHHhc--CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 114 ---RDALRM--RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 114 ---~~i~~~--np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.++.. .+..+++++||++|.|++++++++.
T Consensus 127 ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~ 162 (581)
T TIGR00475 127 FMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELK 162 (581)
T ss_pred HHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHH
Confidence 333332 2368999999999999999987764
No 87
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.01 E-value=2.1e-05 Score=56.98 Aligned_cols=96 Identities=16% Similarity=0.121 Sum_probs=60.9
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhH-
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADL- 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l- 109 (148)
+.+.++++.|.-....+. -..+|.+++++|+.+..... .....+.+ -++|+||+|+.+. ...
T Consensus 48 ~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--~ivv~nK~Dl~~~--~~~~ 123 (171)
T cd00157 48 VNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVP--IILVGTKIDLRDD--ENTL 123 (171)
T ss_pred EEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC--EEEEEccHHhhhc--hhhh
Confidence 457778888854221111 13478899999987643210 01122444 6999999999876 422
Q ss_pred ------------HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 ------------AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ------------~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+...+..+.. ...+++.+||++|.|++++++++.
T Consensus 124 ~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 124 KKLEKGKEPITPEEGEKLAKEI-GAIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred hhcccCCCccCHHHHHHHHHHh-CCeEEEEeecCCCCCHHHHHHHHh
Confidence 2233333333 334899999999999999998875
No 88
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.01 E-value=2.6e-05 Score=56.76 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=59.2
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc---cc------cCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI---PR------KGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~---~~------~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
.+.+-+.+|+|.-....+. -..+|.+++|+|+...... .. ...+.++ -++|+||+|+... . .+
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p--~ivv~nK~Dl~~~--~-~~ 122 (161)
T cd04124 48 TILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP--CIVVANKIDLDPS--V-TQ 122 (161)
T ss_pred EEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc--EEEEEECccCchh--H-HH
Confidence 3455677777753211111 1356889999998765321 10 1112344 6899999999543 2 22
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+..+..+.. ..+++++||++|.|++++++.++
T Consensus 123 ~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 123 KKFNFAEKH--NLPLYYVSAADGTNVVKLFQDAI 154 (161)
T ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 333333322 46899999999999999999876
No 89
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.00 E-value=2.2e-05 Score=56.58 Aligned_cols=98 Identities=16% Similarity=0.079 Sum_probs=62.0
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.+.++.|....... .-..+|.++.++|+.+..... ....+.++ -+++.||+|+.+...-..+
T Consensus 49 ~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~--iivv~nK~D~~~~~~~~~~ 126 (161)
T cd04113 49 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV--VILVGNKSDLADQREVTFL 126 (161)
T ss_pred EEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe--EEEEEEchhcchhccCCHH
Confidence 45566777774211000 113568899999998753311 11123444 6999999999764111223
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
......+..+ .+++.+||++|.|++++|++++-
T Consensus 127 ~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 127 EASRFAQENG--LLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred HHHHHHHHcC--CEEEEEECCCCCCHHHHHHHHHH
Confidence 4555555443 78999999999999999998763
No 90
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.00 E-value=1.4e-05 Score=58.07 Aligned_cols=75 Identities=23% Similarity=0.197 Sum_probs=51.0
Q ss_pred cCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhH--HHHHHHHHhcCCCCcEEEEEec
Q 032030 64 LADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADL--AVMERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l--~~~~~~i~~~np~a~vi~tSa~ 131 (148)
.+|.+++++|+...+... ....+.++ -+++.||+|+... ..+ +......+. .+.+++++||+
T Consensus 74 ~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~--~iiv~nK~Dl~~~--~~~~~~~~~~~~~~--~~~~~~~~Sa~ 147 (166)
T cd01869 74 GAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN--KLLVGNKCDLTDK--RVVDYSEAQEFADE--LGIPFLETSAK 147 (166)
T ss_pred cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc--EEEEEEChhcccc--cCCCHHHHHHHHHH--cCCeEEEEECC
Confidence 478899999987653211 00112344 6899999999754 322 334444443 34689999999
Q ss_pred CCCCHHHHHHhhh
Q 032030 132 WVIGIIFTLSITH 144 (148)
Q Consensus 132 ~g~gi~~l~~~~~ 144 (148)
+|.|+++++++++
T Consensus 148 ~~~~v~~~~~~i~ 160 (166)
T cd01869 148 NATNVEQAFMTMA 160 (166)
T ss_pred CCcCHHHHHHHHH
Confidence 9999999998875
No 91
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.99 E-value=2.9e-05 Score=56.53 Aligned_cols=80 Identities=16% Similarity=0.019 Sum_probs=51.6
Q ss_pred cCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
.+|.+++++|........ .......+ -++|.||+|+.+.-....+...+..+..+ .+++++||++|
T Consensus 73 ~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p--iivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~ 148 (165)
T cd01865 73 GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ--VILVGNKCDMEDERVVSSERGRQLADQLG--FEFFEASAKEN 148 (165)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCC--EEEEEECcccCcccccCHHHHHHHHHHcC--CEEEEEECCCC
Confidence 567789999987543211 01112333 59999999997641011233444444332 47999999999
Q ss_pred CCHHHHHHhhhhhc
Q 032030 134 IGIIFTLSITHYIV 147 (148)
Q Consensus 134 ~gi~~l~~~~~~~~ 147 (148)
.|+++++++++..+
T Consensus 149 ~gv~~l~~~l~~~~ 162 (165)
T cd01865 149 INVKQVFERLVDII 162 (165)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999987653
No 92
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.99 E-value=3.7e-05 Score=64.84 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=61.1
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCC-Cccc-c-C----CCCcceeeEEEEecCCCCCchhhhH----
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGD-KIPR-K-G----GPGITQADLLVINKTDLASAIGADL---- 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~-~~~~-~-~----~~qi~~ADivViNK~DL~~~~~~~l---- 109 (148)
.-+.++.+.|--.. ..+ ....+|..++|+|+.++. .-+. . . ...++ --++++||+|+.++ ...
T Consensus 80 ~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~-~iIVvvNK~Dl~~~--~~~~~~~ 156 (406)
T TIGR03680 80 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIK-NIVIVQNKIDLVSK--EKALENY 156 (406)
T ss_pred cEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCC-eEEEEEEccccCCH--HHHHHHH
Confidence 45678888884211 111 113568999999998764 1110 0 0 00111 13788999999876 443
Q ss_pred HHHHHHHHhc-CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRM-RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~-np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+++.+.++.. ....+++++||++|.|+++|++++.
T Consensus 157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~ 192 (406)
T TIGR03680 157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIE 192 (406)
T ss_pred HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHH
Confidence 3344444332 2356899999999999999999875
No 93
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.99 E-value=1.6e-05 Score=57.87 Aligned_cols=98 Identities=14% Similarity=0.052 Sum_probs=59.6
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc---c-------cCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP---R-------KGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~---~-------~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+-+.+++|..-.... .-..+|.+++|+|........ . ...+..+ -++|.||+|+.++-....+
T Consensus 51 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~--iiiv~nK~Dl~~~~~~~~~ 128 (166)
T cd04122 51 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV--IFLIGNKADLEAQRDVTYE 128 (166)
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe--EEEEEECcccccccCcCHH
Confidence 34556666664211000 013568889999987653210 0 1122333 5899999999765111223
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+..+.. ..+++++||++|.|++++|..++-
T Consensus 129 ~~~~~~~~~--~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 129 EAKQFADEN--GLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred HHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHH
Confidence 455555533 468999999999999999988763
No 94
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.99 E-value=1.4e-05 Score=57.65 Aligned_cols=95 Identities=22% Similarity=0.247 Sum_probs=58.2
Q ss_pred CCCEEEEecCCceee----eeeccccCceEEEEEeCCCCCCcc------c---cCCCCcceeeEEEEecCCCCCchhhhH
Q 032030 43 KADLLLCESGGDNLA----ANFSRELADYIIYIIDVSGGDKIP------R---KGGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 43 ~~D~IliEtsG~~~~----~~~~~~~~d~~i~vvDa~~~~~~~------~---~~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
...+.+..|+|.-.. ..+. ..+|.+++|+|..+..... . ......+ -++|+||+|+.+. .++
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl~~~--~~~ 125 (164)
T cd04101 51 TVELFIFDSAGQELYSDMVSNYW-ESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP--GVLVGNKMDLADK--AEV 125 (164)
T ss_pred EEEEEEEECCCHHHHHHHHHHHh-CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--EEEEEECcccccc--cCC
Confidence 356667777774211 1111 3578899999987653211 0 0111233 6999999999765 433
Q ss_pred HH--HHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AV--MERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~--~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.. .....+. .+.+++++||++|.|++++++.++
T Consensus 126 ~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 126 TDAQAQAFAQA--NQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred CHHHHHHHHHH--cCCeEEEEeCCCCCChHHHHHHHH
Confidence 22 2222222 236789999999999999998764
No 95
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.98 E-value=7.6e-06 Score=59.19 Aligned_cols=96 Identities=19% Similarity=0.110 Sum_probs=57.1
Q ss_pred EEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------cc-CCCCcceeeEEEEecCCCCCchhhhHHH
Q 032030 46 LLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RK-GGPGITQADLLVINKTDLASAIGADLAV 111 (148)
Q Consensus 46 ~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~-~~~qi~~ADivViNK~DL~~~~~~~l~~ 111 (148)
+-+.+|+|.--..... -..+|.++++.|......+. .. ....++ -++|.||+|+.+......+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--iviv~nK~Dl~~~~~~~~~~ 128 (163)
T cd04176 51 LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVP--IILVGNKVDLESEREVSSAE 128 (163)
T ss_pred EEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECccchhcCccCHHH
Confidence 4456777742111111 13568888889987653211 00 012345 68999999997541111222
Q ss_pred HHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 112 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 112 ~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.....+.. +.+++++||++|.|+++++.+++-
T Consensus 129 ~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 129 GRALAEEW--GCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred HHHHHHHh--CCEEEEecCCCCCCHHHHHHHHHH
Confidence 33333332 368999999999999999998763
No 96
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.97 E-value=3.2e-05 Score=55.66 Aligned_cols=99 Identities=15% Similarity=0.069 Sum_probs=61.1
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc---cc-------cCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI---PR-------KGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~---~~-------~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
..+.++++.|-.-...+. -..+|.+++++|+.....+ .. ...+.++ -++++||+|+.+......+
T Consensus 50 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~--iivv~nK~D~~~~~~~~~~ 127 (163)
T cd01860 50 VKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII--IALVGNKADLESKRQVSTE 127 (163)
T ss_pred EEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe--EEEEEECccccccCcCCHH
Confidence 345566777742110011 1246888999998765432 11 0112233 4789999999853112344
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
...+..+..+ .+++++||++|.|++++++++...
T Consensus 128 ~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 128 EAQEYADENG--LLFFETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred HHHHHHHHcC--CEEEEEECCCCCCHHHHHHHHHHH
Confidence 5555555544 689999999999999999998653
No 97
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.97 E-value=1.9e-05 Score=60.16 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=61.1
Q ss_pred CCEEEEecCCcee----e-ee-----e-ccccCceEEEEEeCCCCCCcc----------ccC---CCCcceeeEEEEecC
Q 032030 44 ADLLLCESGGDNL----A-AN-----F-SRELADYIIYIIDVSGGDKIP----------RKG---GPGITQADLLVINKT 99 (148)
Q Consensus 44 ~D~IliEtsG~~~----~-~~-----~-~~~~~d~~i~vvDa~~~~~~~----------~~~---~~qi~~ADivViNK~ 99 (148)
+.+.+++|.|..- . .. + .-..+|.+++|+|+...+.+. ... ...++ -++|.||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p--iiivgNK~ 126 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP--IVVVGNKR 126 (198)
T ss_pred EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC--EEEEEECc
Confidence 6677899988531 0 00 0 013578999999998764211 001 22344 69999999
Q ss_pred CCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 100 DLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 100 DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
|+...-....+.+.+..++ ..+.+++++||++|.|++++|+.++
T Consensus 127 Dl~~~~~~~~~~~~~~~~~-~~~~~~~e~Sak~g~~v~~lf~~i~ 170 (198)
T cd04142 127 DQQRHRFAPRHVLSVLVRK-SWKCGYLECSAKYNWHILLLFKELL 170 (198)
T ss_pred cccccccccHHHHHHHHHH-hcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9965300111223332222 2357899999999999999998876
No 98
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.96 E-value=3.1e-05 Score=58.64 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=51.9
Q ss_pred cCceEEEEEeCCCCCCccc---------cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 032030 64 LADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI 134 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~---------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~ 134 (148)
.++.+++|+|+.+...+.. ...+.++ -++|+||+|+.+......+...+..+..+ .+++++||++|.
T Consensus 78 ~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~p--iivVgNK~Dl~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~ 153 (199)
T cd04110 78 GTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVC--KVLVGNKNDDPERKVVETEDAYKFAGQMG--ISLFETSAKENI 153 (199)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--EEEEEECcccccccccCHHHHHHHHHHcC--CEEEEEECCCCc
Confidence 4677899999876532210 0112233 58999999997651112234444454433 689999999999
Q ss_pred CHHHHHHhhhh
Q 032030 135 GIIFTLSITHY 145 (148)
Q Consensus 135 gi~~l~~~~~~ 145 (148)
|++++|+++..
T Consensus 154 gi~~lf~~l~~ 164 (199)
T cd04110 154 NVEEMFNCITE 164 (199)
T ss_pred CHHHHHHHHHH
Confidence 99999998764
No 99
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.96 E-value=3.5e-05 Score=55.02 Aligned_cols=97 Identities=21% Similarity=0.171 Sum_probs=60.6
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
..+.+.++.|.-...... -..+|.+++|+|..+.+... ......+ .-++|+||+|+.+......+
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piiiv~nK~D~~~~~~~~~~ 126 (162)
T cd04123 49 IDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNI--SLVIVGNKIDLERQRVVSKS 126 (162)
T ss_pred EEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEECcccccccCCCHH
Confidence 456677777742111111 13578889999987664211 1111233 37899999999864111223
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+.+..+.. +.+++++|+++|.|++++++++.
T Consensus 127 ~~~~~~~~~--~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 127 EAEEYAKSV--GAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHH
Confidence 455555543 36789999999999999999864
No 100
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.95 E-value=1.9e-05 Score=55.81 Aligned_cols=77 Identities=17% Similarity=0.106 Sum_probs=51.1
Q ss_pred cCceEEEEEeCCCCCCcc-------ccC----CCCcceeeEEEEecCCCCCchhhhHHHHHHHHH--hc-CCCCcEEEEE
Q 032030 64 LADYIIYIIDVSGGDKIP-------RKG----GPGITQADLLVINKTDLASAIGADLAVMERDAL--RM-RDGGPFIFAQ 129 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~-------~~~----~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~--~~-np~a~vi~tS 129 (148)
.+|.+++++|+....... ... ...++ -++|+||.|+.+. ...+.+.+.+. .. ....+++++|
T Consensus 67 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p--~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 142 (159)
T cd04159 67 GVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIP--LLVLGNKNDLPGA--LSVDELIEQMNLKSITDREVSCYSIS 142 (159)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCC--EEEEEeCccccCC--cCHHHHHHHhCcccccCCceEEEEEE
Confidence 568889999987643211 000 12334 4789999999876 54444444432 11 2335789999
Q ss_pred ecCCCCHHHHHHhhh
Q 032030 130 VGWVIGIIFTLSITH 144 (148)
Q Consensus 130 a~~g~gi~~l~~~~~ 144 (148)
+++|.|++++++++.
T Consensus 143 a~~~~gi~~l~~~l~ 157 (159)
T cd04159 143 CKEKTNIDIVLDWLI 157 (159)
T ss_pred eccCCChHHHHHHHh
Confidence 999999999999874
No 101
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.95 E-value=2.3e-05 Score=56.24 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=59.9
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCC------c----ccc-CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDK------I----PRK-GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~------~----~~~-~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+.++++.|......+. -...|..++++|...... + ... ....++ -++|+||+|+.+......
T Consensus 48 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--iiiv~NK~D~~~~~~~~~ 125 (164)
T cd04139 48 VQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP--LLLVGNKCDLEDKRQVSS 125 (164)
T ss_pred EEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEEccccccccccCH
Confidence 457777888853211111 124577788888765321 1 010 012344 699999999976200233
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+...+..++. +.+++++||++|.|++++++++..
T Consensus 126 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 126 EEAANLARQW--GVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred HHHHHHHHHh--CCeEEEeeCCCCCCHHHHHHHHHH
Confidence 3444444433 368999999999999999998864
No 102
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.95 E-value=2.1e-05 Score=56.56 Aligned_cols=99 Identities=14% Similarity=0.069 Sum_probs=59.3
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc----------cc-cCCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI----------PR-KGGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~----------~~-~~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+-+.+|.|.--...+. -..+|.+++++|......+ .. .....++ -++|.||+|+.+.-....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--iilv~nK~Dl~~~~~~~~ 126 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVP--MVLVGNKCDLEDERVVSR 126 (163)
T ss_pred EEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECccccccceecH
Confidence 344567777753211111 1346778888998654321 01 0112344 578999999976400122
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
+...+..+..+ .+++++||++|.|++++++++...
T Consensus 127 ~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 127 EEGQALARQWG--CPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred HHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHh
Confidence 23333334333 789999999999999999998754
No 103
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.94 E-value=4e-05 Score=61.74 Aligned_cols=76 Identities=20% Similarity=0.062 Sum_probs=52.1
Q ss_pred cCceEEEEEeCCCCCCccc----cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 64 LADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~----~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
.+|.++.|+|+..+..... ....+.+ -++|+||+||++. ...+...+.+++. +.+++++||+++.|+++|
T Consensus 24 ~aDvIL~VvDar~p~~~~~~~l~~~~~~kp--~iiVlNK~DL~~~--~~~~~~~~~~~~~--~~~vi~vSa~~~~gi~~L 97 (287)
T PRK09563 24 LVDVVIEVLDARIPLSSENPMIDKIIGNKP--RLLILNKSDLADP--EVTKKWIEYFEEQ--GIKALAINAKKGQGVKKI 97 (287)
T ss_pred hCCEEEEEEECCCCCCCCChhHHHHhCCCC--EEEEEEchhcCCH--HHHHHHHHHHHHc--CCeEEEEECCCcccHHHH
Confidence 5688999999876533210 1111333 6999999999876 5555555555432 367899999999999999
Q ss_pred HHhhhh
Q 032030 140 LSITHY 145 (148)
Q Consensus 140 ~~~~~~ 145 (148)
.+.+..
T Consensus 98 ~~~l~~ 103 (287)
T PRK09563 98 LKAAKK 103 (287)
T ss_pred HHHHHH
Confidence 887643
No 104
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.94 E-value=3.2e-05 Score=56.85 Aligned_cols=78 Identities=14% Similarity=0.003 Sum_probs=51.6
Q ss_pred cCceEEEEEeCCCCCCccc-----------cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecC
Q 032030 64 LADYIIYIIDVSGGDKIPR-----------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~-----------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~ 132 (148)
.+|.+++|.|+........ ...+..+ -++|.||+|+.+.-....+...+..++. +.+++++||++
T Consensus 86 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--iiiv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~ 161 (180)
T cd04127 86 DAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD--IVLCGNKADLEDQRQVSEEQAKALADKY--GIPYFETSAAT 161 (180)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc--EEEEEeCccchhcCccCHHHHHHHHHHc--CCeEEEEeCCC
Confidence 4688899999876532110 0112344 5889999999754001223444555543 36899999999
Q ss_pred CCCHHHHHHhhhh
Q 032030 133 VIGIIFTLSITHY 145 (148)
Q Consensus 133 g~gi~~l~~~~~~ 145 (148)
|.|++++++++.-
T Consensus 162 ~~~v~~l~~~l~~ 174 (180)
T cd04127 162 GTNVEKAVERLLD 174 (180)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998864
No 105
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.94 E-value=4.9e-05 Score=59.13 Aligned_cols=99 Identities=13% Similarity=0.016 Sum_probs=60.3
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCC-------
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLAS------- 103 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~------- 103 (148)
+.+-+..|.|--....+ .-..+|.+|+|.|......+. ......++ -++|.||+||.+
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p--iIlVgNK~DL~~~~~~~~~ 121 (220)
T cd04126 44 YNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL--FAVVGNKLDLTEEGALAGQ 121 (220)
T ss_pred EEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc--EEEEEECcccccccccccc
Confidence 45566677774321111 113578899999987653211 01112333 589999999975
Q ss_pred ------------chhhhHHHHHHHHHhcCC------------CCcEEEEEecCCCCHHHHHHhhh
Q 032030 104 ------------AIGADLAVMERDALRMRD------------GGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 104 ------------~~~~~l~~~~~~i~~~np------------~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.-.-..+...+..++.+. ..+++++||++|.|++++|..++
T Consensus 122 ~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~ 186 (220)
T cd04126 122 EKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLF 186 (220)
T ss_pred cccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHH
Confidence 100112345555554431 25889999999999999998876
No 106
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.93 E-value=4.4e-05 Score=63.38 Aligned_cols=93 Identities=25% Similarity=0.278 Sum_probs=59.9
Q ss_pred CCCEEEEecCCce--ee----eeec-----cccCceEEEEEeCCCCCCcc------c---cCC-CCcceeeEEEEecCCC
Q 032030 43 KADLLLCESGGDN--LA----ANFS-----RELADYIIYIIDVSGGDKIP------R---KGG-PGITQADLLVINKTDL 101 (148)
Q Consensus 43 ~~D~IliEtsG~~--~~----~~~~-----~~~~d~~i~vvDa~~~~~~~------~---~~~-~qi~~ADivViNK~DL 101 (148)
+..++++.|+|.- .+ ..|. -..+|.+++|+|+.+..... . ... ...+ -++|+||+|+
T Consensus 236 ~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~p--iIlV~NK~Dl 313 (351)
T TIGR03156 236 GGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIP--QLLVYNKIDL 313 (351)
T ss_pred CceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCC--EEEEEEeecC
Confidence 3567888898862 11 1121 12579999999998654211 0 001 1233 5999999999
Q ss_pred CCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 102 ASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 102 ~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+. .++.. ... ...+++++||++|.|+++|++++.-
T Consensus 314 ~~~--~~v~~----~~~--~~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 314 LDE--PRIER----LEE--GYPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred CCh--HhHHH----HHh--CCCCEEEEEccCCCCHHHHHHHHHh
Confidence 876 44322 221 2246899999999999999998753
No 107
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.93 E-value=1.5e-05 Score=58.08 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=57.3
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc---c-------cC---CCCcceeeEEEEecCCCCCchhh
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP---R-------KG---GPGITQADLLVINKTDLASAIGA 107 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~---~-------~~---~~qi~~ADivViNK~DL~~~~~~ 107 (148)
..+-+..|+|.-....+ .-..+|.+++|.|........ . .. .+.+| -++|.||+|+... .
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p--iilv~nK~Dl~~~--~ 124 (165)
T cd04140 49 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP--IMLVGNKCDESHK--R 124 (165)
T ss_pred EEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC--EEEEEECcccccc--C
Confidence 34556666664211111 112467788999987653211 0 00 12344 6899999999763 2
Q ss_pred hH--HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 108 DL--AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 108 ~l--~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
++ +......+ ....+++++||++|.|++++|++++
T Consensus 125 ~v~~~~~~~~~~--~~~~~~~e~SA~~g~~v~~~f~~l~ 161 (165)
T cd04140 125 EVSSNEGAACAT--EWNCAFMETSAKTNHNVQELFQELL 161 (165)
T ss_pred eecHHHHHHHHH--HhCCcEEEeecCCCCCHHHHHHHHH
Confidence 22 22233333 2346899999999999999999874
No 108
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.93 E-value=2.2e-05 Score=58.89 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=50.5
Q ss_pred cCceEEEEEeCCCCCCc----------cccCCCCcceeeEEEEecCCCCCchhhh--HHHHHHHHHhcCCCCcEEEEEec
Q 032030 64 LADYIIYIIDVSGGDKI----------PRKGGPGITQADLLVINKTDLASAIGAD--LAVMERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~----------~~~~~~qi~~ADivViNK~DL~~~~~~~--l~~~~~~i~~~np~a~vi~tSa~ 131 (148)
.+|.+++|+|+...+.+ ....+..++ -++|+||+|+..+ .. .+...+..+.. ..+++++||+
T Consensus 73 ~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p--iiiv~NK~Dl~~~--~~~~~~~~~~l~~~~--~~~~~e~Sa~ 146 (191)
T cd04112 73 DAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV--IMLLGNKADMSGE--RVVKREDGERLAKEY--GVPFMETSAK 146 (191)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc--EEEEEEcccchhc--cccCHHHHHHHHHHc--CCeEEEEeCC
Confidence 46889999998765321 111122344 6789999999743 21 22333433432 3589999999
Q ss_pred CCCCHHHHHHhhhh
Q 032030 132 WVIGIIFTLSITHY 145 (148)
Q Consensus 132 ~g~gi~~l~~~~~~ 145 (148)
+|.|++++|++++-
T Consensus 147 ~~~~v~~l~~~l~~ 160 (191)
T cd04112 147 TGLNVELAFTAVAK 160 (191)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999998753
No 109
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.92 E-value=4.7e-05 Score=55.25 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=60.5
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc---c-------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI---P-------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~---~-------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.+.++.|......+. -..+|.++.++|+.+...+ . ......++ -++|.||+|+...-....+
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p--~ivv~nK~Dl~~~~~~~~~ 129 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVV--LLLIGNKCDLEEQREVLFE 129 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc--EEEEEECcccccccccCHH
Confidence 466777787743110010 1246889999999875321 1 11122444 5899999999754111223
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+..+. ....+++++||++|.|+++++++++
T Consensus 130 ~~~~~~~~-~~~~~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 130 EACTLAEK-NGMLAVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred HHHHHHHH-cCCcEEEEEECCCCCCHHHHHHHHH
Confidence 44444443 3334789999999999999998865
No 110
>COG2262 HflX GTPases [General function prediction only]
Probab=97.92 E-value=3.1e-05 Score=65.11 Aligned_cols=93 Identities=22% Similarity=0.235 Sum_probs=62.4
Q ss_pred CCCEEEEecCCce--ee----eeec-----cccCceEEEEEeCCCCCCcc---------c-cCCCCcceeeEEEEecCCC
Q 032030 43 KADLLLCESGGDN--LA----ANFS-----RELADYIIYIIDVSGGDKIP---------R-KGGPGITQADLLVINKTDL 101 (148)
Q Consensus 43 ~~D~IliEtsG~~--~~----~~~~-----~~~~d~~i~vvDa~~~~~~~---------~-~~~~qi~~ADivViNK~DL 101 (148)
+..+++-.|+|-. +| +.|. ...+|+++.|||+++..-.. . .....+| -++|+||+|+
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p--~i~v~NKiD~ 316 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIP--IILVLNKIDL 316 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCC--EEEEEecccc
Confidence 4669999999964 22 2331 13579999999998873211 0 1112345 6999999999
Q ss_pred CCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 102 ASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 102 ~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
++. .. ....++...| ..+++||++|.|++.|.+.+.
T Consensus 317 ~~~--~~---~~~~~~~~~~--~~v~iSA~~~~gl~~L~~~i~ 352 (411)
T COG2262 317 LED--EE---ILAELERGSP--NPVFISAKTGEGLDLLRERII 352 (411)
T ss_pred cCc--hh---hhhhhhhcCC--CeEEEEeccCcCHHHHHHHHH
Confidence 877 44 2233333334 578999999999999987654
No 111
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.92 E-value=1.5e-05 Score=64.25 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=49.4
Q ss_pred CceEEEEEeCCCCC-Cc---ccc----CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCH
Q 032030 65 ADYIIYIIDVSGGD-KI---PRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 136 (148)
Q Consensus 65 ~d~~i~vvDa~~~~-~~---~~~----~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi 136 (148)
+|.++.|+|+..+. .. ... ....++ -++|+||+||.++ .+......... ..+.+++++||+++.|+
T Consensus 79 vD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip--~iIVlNK~DL~~~--~~~~~~~~~~~--~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 79 VDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIE--PVIVLTKADLLDD--EEEELELVEAL--ALGYPVLAVSAKTGEGL 152 (287)
T ss_pred CCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCC--EEEEEEHHHCCCh--HHHHHHHHHHH--hCCCeEEEEECCCCccH
Confidence 57789999987664 21 110 112344 5999999999876 43222222223 35579999999999999
Q ss_pred HHHHHhhh
Q 032030 137 IFTLSITH 144 (148)
Q Consensus 137 ~~l~~~~~ 144 (148)
++|++++.
T Consensus 153 ~~L~~~L~ 160 (287)
T cd01854 153 DELREYLK 160 (287)
T ss_pred HHHHhhhc
Confidence 99988754
No 112
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.91 E-value=2e-05 Score=66.65 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=61.3
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCC-Cccc------cCCCCcceeeEEEEecCCCCCchhhhHH---
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGD-KIPR------KGGPGITQADLLVINKTDLASAIGADLA--- 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~-~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~--- 110 (148)
.-+.|+.|.|-... ..+ ....+|..+.|+|+.++. ..+. .....++ --++|+||+|+.++ .+..
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~-~iiVVlNK~Dl~~~--~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIK-NIVIVQNKIDLVSK--ERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCC-cEEEEEEeeccccc--hhHHHHH
Confidence 45788999995311 111 113468999999998763 1110 0001121 13788999999876 4433
Q ss_pred -HHHHHHHhc-CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 111 -VMERDALRM-RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 111 -~~~~~i~~~-np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
++.+.++.. ....+++++||++|.|+++|++++.
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~ 197 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIE 197 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHH
Confidence 333444322 2357899999999999999999875
No 113
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.91 E-value=6.1e-07 Score=66.63 Aligned_cols=94 Identities=23% Similarity=0.210 Sum_probs=57.8
Q ss_pred CCCEEEEecCCce-ee-----ee-----eccccCceEEEEEeCCCCCCc----cccCCCCcceeeEEEEecCCCCCchhh
Q 032030 43 KADLLLCESGGDN-LA-----AN-----FSRELADYIIYIIDVSGGDKI----PRKGGPGITQADLLVINKTDLASAIGA 107 (148)
Q Consensus 43 ~~D~IliEtsG~~-~~-----~~-----~~~~~~d~~i~vvDa~~~~~~----~~~~~~qi~~ADivViNK~DL~~~~~~ 107 (148)
+..+.+|-+.|.- +. +. +.....|.++.|+|+.+.+.- .+...-.+| -++++||+|++..-+-
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P--~vvvlN~~D~a~~~g~ 123 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIP--VVVVLNKMDEAERKGI 123 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSS--EEEEEETHHHHHHTTE
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCC--EEEEEeCHHHHHHcCC
Confidence 4567888888852 10 00 112357899999999876431 111223456 7999999998876221
Q ss_pred --hHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 108 --DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 108 --~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
+.+++.+.+ +.|++++||++|.|+++|.+.+
T Consensus 124 ~id~~~Ls~~L-----g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 124 EIDAEKLSERL-----GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EE-HHHHHHHH-----TS-EEEEBTTTTBTHHHHHHHH
T ss_pred EECHHHHHHHh-----CCCEEEEEeCCCcCHHHHHhhC
Confidence 234454444 3689999999999999998763
No 114
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.91 E-value=3.2e-05 Score=63.63 Aligned_cols=101 Identities=21% Similarity=0.230 Sum_probs=65.3
Q ss_pred CCEEEEecCCceeee--------eecc--ccCceEEEEEeCCCCC--C----ccc------cCCCC-cceeeEEEEecCC
Q 032030 44 ADLLLCESGGDNLAA--------NFSR--ELADYIIYIIDVSGGD--K----IPR------KGGPG-ITQADLLVINKTD 100 (148)
Q Consensus 44 ~D~IliEtsG~~~~~--------~~~~--~~~d~~i~vvDa~~~~--~----~~~------~~~~q-i~~ADivViNK~D 100 (148)
..+.++.+.|+.-.+ .|.. ..++.+++|+|+...+ + +.. .+.+. ....-++|+||+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 457888888873211 1211 2467889999987641 1 100 11111 1223699999999
Q ss_pred CCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhhc
Q 032030 101 LASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 147 (148)
Q Consensus 101 L~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~~ 147 (148)
+.++ ...+++.+.+.+.. ..+++++||+++.|++++++++.-.+
T Consensus 285 L~~~--~~~~~~~~~l~~~~-~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 285 LLDE--EELAELLKELKKAL-GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CCCh--HHHHHHHHHHHHHc-CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 9887 66666666555333 25899999999999999999886543
No 115
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.91 E-value=2.1e-05 Score=60.84 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=61.6
Q ss_pred CCCEEEEecCCcee--eeeeccccCceEEEEEeCCCCCCcc-------c--cC--CCCcceeeEEEEecCCCCCchhhhH
Q 032030 43 KADLLLCESGGDNL--AANFSRELADYIIYIIDVSGGDKIP-------R--KG--GPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 43 ~~D~IliEtsG~~~--~~~~~~~~~d~~i~vvDa~~~~~~~-------~--~~--~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
...+.++++.|... ...+....+|.+++|+|+.....+. . .. ...++ -++|.||+|+.+. .++
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p--iilV~NK~Dl~~~--~~v 124 (221)
T cd04148 49 ESTLVVIDHWEQEMWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP--IILVGNKSDLARS--REV 124 (221)
T ss_pred EEEEEEEeCCCcchHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEEChhcccc--cee
Confidence 35567788888641 1111111679999999987653211 0 01 12345 5999999999765 322
Q ss_pred --HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 110 --AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 110 --~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
+...+.... .+.+++++||++|.|+++++++++-.
T Consensus 125 ~~~~~~~~a~~--~~~~~~e~SA~~~~gv~~l~~~l~~~ 161 (221)
T cd04148 125 SVQEGRACAVV--FDCKFIETSAGLQHNVDELLEGIVRQ 161 (221)
T ss_pred cHHHHHHHHHH--cCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 222233332 24689999999999999999988643
No 116
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.91 E-value=2.7e-05 Score=57.87 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=56.2
Q ss_pred CEEEEecCCceeee--------------eecc--ccCceEEEEEeCCCCCCccc-----c-CCCCcceeeEEEEecCCCC
Q 032030 45 DLLLCESGGDNLAA--------------NFSR--ELADYIIYIIDVSGGDKIPR-----K-GGPGITQADLLVINKTDLA 102 (148)
Q Consensus 45 D~IliEtsG~~~~~--------------~~~~--~~~d~~i~vvDa~~~~~~~~-----~-~~~qi~~ADivViNK~DL~ 102 (148)
.+.++.|.|..... .+.+ ...+.+++|+|+.++..... . ....++ -++++||+|+.
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~p--viiv~nK~D~~ 142 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIP--VLIVLTKADKL 142 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCC--EEEEEECcccC
Confidence 57889999964210 0101 12467899999876432111 0 112344 58999999998
Q ss_pred CchhhhH----HHHHHHHHhcCCCCcEEEEEecCCCCHH
Q 032030 103 SAIGADL----AVMERDALRMRDGGPFIFAQVGWVIGII 137 (148)
Q Consensus 103 ~~~~~~l----~~~~~~i~~~np~a~vi~tSa~~g~gi~ 137 (148)
++ .+. +.+++.++...+..+++++||++|.|++
T Consensus 143 ~~--~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 143 KK--SELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred CH--HHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 76 544 4455555544445689999999999974
No 117
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.90 E-value=4.8e-05 Score=54.61 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=61.3
Q ss_pred CCEEEEecCCceee----eeeccccCceEEEEEeCCCCCCccc---c-------CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLA----ANFSRELADYIIYIIDVSGGDKIPR---K-------GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~----~~~~~~~~d~~i~vvDa~~~~~~~~---~-------~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.++++.|.... ..+ -..+|.+++++|+.+...... . ..+.++ -++++||+|+........
T Consensus 49 ~~~~l~D~~G~~~~~~~~~~~-~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p--ivvv~nK~D~~~~~~~~~ 125 (164)
T smart00175 49 VKLQIWDTAGQERFRSITSSY-YRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV--IMLVGNKSDLEDQRQVSR 125 (164)
T ss_pred EEEEEEECCChHHHHHHHHHH-hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe--EEEEEEchhcccccCCCH
Confidence 34556777775311 111 134789999999977543210 0 113345 799999999976411233
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+...+..+.. +.+++++|+++|.|++++++++.
T Consensus 126 ~~~~~~~~~~--~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 126 EEAEAFAEEH--GLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred HHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 4555555543 36799999999999999998764
No 118
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.90 E-value=5.4e-05 Score=55.62 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=59.4
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchh----
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIG---- 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~---- 106 (148)
..+.+.++.|.-....+ .-..+|.++++.|......+.. ...+..+ -+++.||+|+.+..+
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~~~~~~~ 125 (173)
T cd04130 48 VRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAP--IILVGTQADLRTDVNVLIQ 125 (173)
T ss_pred EEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC--EEEEeeChhhccChhHHHH
Confidence 44567777775321111 1135788899999876533211 0112344 499999999975410
Q ss_pred --------hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 --------ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 --------~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
-..+...+..++. ...+++++||++|.|++++|+.+.
T Consensus 126 ~~~~~~~~v~~~~~~~~a~~~-~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 126 LARYGEKPVSQSRAKALAEKI-GACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HhhcCCCCcCHHHHHHHHHHh-CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 0112333444432 234899999999999999998764
No 119
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.90 E-value=4.1e-05 Score=57.29 Aligned_cols=78 Identities=17% Similarity=0.100 Sum_probs=49.0
Q ss_pred cCceEEEEEeCCCCCCc-------cccC-C---CCcceeeEEEEecCCCCCchhhhHHHHHHHHHh--cC-CCCcEEEEE
Q 032030 64 LADYIIYIIDVSGGDKI-------PRKG-G---PGITQADLLVINKTDLASAIGADLAVMERDALR--MR-DGGPFIFAQ 129 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~-------~~~~-~---~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~--~n-p~a~vi~tS 129 (148)
.+|.+|+|+|+.....+ .... . .+.+ -++|.||.|+... ...+.+.+.+.. .+ ....++++|
T Consensus 84 ~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p--iilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~S 159 (182)
T PTZ00133 84 NTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV--LLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCC 159 (182)
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC--EEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeee
Confidence 57889999998764321 1111 1 1234 5788999999764 333344444321 11 112567899
Q ss_pred ecCCCCHHHHHHhhhh
Q 032030 130 VGWVIGIIFTLSITHY 145 (148)
Q Consensus 130 a~~g~gi~~l~~~~~~ 145 (148)
|++|.|++++++++.-
T Consensus 160 a~tg~gv~e~~~~l~~ 175 (182)
T PTZ00133 160 ATTAQGLYEGLDWLSA 175 (182)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999999863
No 120
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.90 E-value=3.5e-05 Score=65.71 Aligned_cols=94 Identities=18% Similarity=0.148 Sum_probs=62.2
Q ss_pred CCCEEEEecCCceeee----------ee-ccccCceEEEEEeCCCCCCc--cc---cCCCCcceeeEEEEecCCCCCchh
Q 032030 43 KADLLLCESGGDNLAA----------NF-SRELADYIIYIIDVSGGDKI--PR---KGGPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~----------~~-~~~~~d~~i~vvDa~~~~~~--~~---~~~~qi~~ADivViNK~DL~~~~~ 106 (148)
++-+.++.|-|+=... +. .-..+|++++|+|+.+.... .. ..+...+ .++|+||+||.++
T Consensus 264 G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~--~i~v~NK~DL~~~-- 339 (454)
T COG0486 264 GIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKP--IIVVLNKADLVSK-- 339 (454)
T ss_pred CEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCC--EEEEEechhcccc--
Confidence 5556677777763110 00 11357999999999885221 11 1222333 5999999999998
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+.. +..+..+++.+|+++|+|++.|.+.+.-
T Consensus 340 ~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~ 373 (454)
T COG0486 340 IELESE-----KLANGDAIISISAKTGEGLDALREAIKQ 373 (454)
T ss_pred cccchh-----hccCCCceEEEEecCccCHHHHHHHHHH
Confidence 654433 3345568999999999999999877653
No 121
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.89 E-value=2.7e-05 Score=56.42 Aligned_cols=99 Identities=13% Similarity=0.050 Sum_probs=58.9
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCc----------cc-cCCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKI----------PR-KGGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~----------~~-~~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+-+..|+|.-....+ .-..+|.+++++|....... .. ...+.+| -+++.||+|+.+......
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--iilv~nK~Dl~~~~~~~~ 126 (164)
T cd04175 49 CMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP--MILVGNKCDLEDERVVGK 126 (164)
T ss_pred EEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECCcchhccEEcH
Confidence 33446677774321111 11356788889997653211 11 1123455 589999999975411122
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
+...+..++.+ .+++++||++|.|+++++.++..-
T Consensus 127 ~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 127 EQGQNLARQWG--CAFLETSAKAKINVNEIFYDLVRQ 161 (164)
T ss_pred HHHHHHHHHhC--CEEEEeeCCCCCCHHHHHHHHHHH
Confidence 23334344333 589999999999999999998643
No 122
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.89 E-value=5.1e-05 Score=55.93 Aligned_cols=79 Identities=14% Similarity=-0.004 Sum_probs=51.0
Q ss_pred ccCceEEEEEeCCCCCCcc------ccC--CCCcceeeEEEEecCCCCCchhhhH--HHHHHHHHhcCCCCcEEEEEecC
Q 032030 63 ELADYIIYIIDVSGGDKIP------RKG--GPGITQADLLVINKTDLASAIGADL--AVMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 63 ~~~d~~i~vvDa~~~~~~~------~~~--~~qi~~ADivViNK~DL~~~~~~~l--~~~~~~i~~~np~a~vi~tSa~~ 132 (148)
..+|.+++|+|+....... ... ...+| -++|+||+|+.+. ... ....+..+..+. .+++++||++
T Consensus 76 ~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p--~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 150 (169)
T cd01892 76 AACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIP--CLFVAAKADLDEQ--QQRYEVQPDEFCRKLGL-PPPLHFSSKL 150 (169)
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCe--EEEEEEccccccc--ccccccCHHHHHHHcCC-CCCEEEEecc
Confidence 3678899999987653211 111 12344 7999999999754 211 122333333332 3458999999
Q ss_pred CCCHHHHHHhhhhh
Q 032030 133 VIGIIFTLSITHYI 146 (148)
Q Consensus 133 g~gi~~l~~~~~~~ 146 (148)
|.|++++|+.++-.
T Consensus 151 ~~~v~~lf~~l~~~ 164 (169)
T cd01892 151 GDSSNELFTKLATA 164 (169)
T ss_pred CccHHHHHHHHHHH
Confidence 99999999987643
No 123
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.88 E-value=1.7e-05 Score=69.96 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=62.2
Q ss_pred CCCEEEEecCCceeeee----------e-ccccCceEEEEEeCCCCCCccc----cCCCCcceeeEEEEecCCCCCchhh
Q 032030 43 KADLLLCESGGDNLAAN----------F-SRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGA 107 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~----------~-~~~~~d~~i~vvDa~~~~~~~~----~~~~qi~~ADivViNK~DL~~~~~~ 107 (148)
+..+.++.|.|.--... + .....|.++.|+|+.+.+.... ......+ -++++||+|+.+. .
T Consensus 40 ~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~P--iIIVlNK~Dl~~~--~ 115 (591)
T TIGR00437 40 GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIP--MILALNLVDEAEK--K 115 (591)
T ss_pred CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCC--EEEEEehhHHHHh--C
Confidence 34578999999632110 1 1135799999999987643211 1122344 6899999999754 3
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 108 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 108 ~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
....-.+.+.+.. +.|++++||++|.|++++++++.
T Consensus 116 ~i~~d~~~L~~~l-g~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 116 GIRIDEEKLEERL-GVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred CChhhHHHHHHHc-CCCEEEEECCCCCCHHHHHHHHH
Confidence 2222123333322 36899999999999999999875
No 124
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.88 E-value=6e-05 Score=54.20 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=45.6
Q ss_pred cCceEEEEEeCCCCCCcc-----ccC-C--CCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 032030 64 LADYIIYIIDVSGGDKIP-----RKG-G--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIG 135 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~-----~~~-~--~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~g 135 (148)
.+|.++.|+|+..+.... ... . ...+ -++|+||+|+.++ .++....+.+++.. .+++++||+++.+
T Consensus 11 ~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~--~iivlNK~DL~~~--~~~~~~~~~~~~~~--~~ii~iSa~~~~~ 84 (141)
T cd01857 11 RSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKK--NILLLNKADLLTE--EQRKAWAEYFKKEG--IVVVFFSALKENA 84 (141)
T ss_pred hCCEEEEEEEccCCcccCCHHHHHHHHhccCCCc--EEEEEechhcCCH--HHHHHHHHHHHhcC--CeEEEEEecCCCc
Confidence 578899999997654311 100 0 1334 6899999999877 66666666666544 5899999998764
No 125
>PRK01889 GTPase RsgA; Reviewed
Probab=97.88 E-value=5e-05 Score=63.12 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=49.6
Q ss_pred CceEEEEEeCCCCCCcc--cc-----CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHH
Q 032030 65 ADYIIYIIDVSGGDKIP--RK-----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 137 (148)
Q Consensus 65 ~d~~i~vvDa~~~~~~~--~~-----~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~ 137 (148)
.|.++.|+++....... .. ....++ -++|+||+||+++ .+ ...+.++..+++.+++.+|+++|.|++
T Consensus 113 vD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~--piIVLNK~DL~~~--~~--~~~~~~~~~~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 113 VDTVFIVCSLNHDFNLRRIERYLALAWESGAE--PVIVLTKADLCED--AE--EKIAEVEALAPGVPVLAVSALDGEGLD 186 (356)
T ss_pred CCEEEEEEecCCCCChhHHHHHHHHHHHcCCC--EEEEEEChhcCCC--HH--HHHHHHHHhCCCCcEEEEECCCCccHH
Confidence 47777888874322210 01 112344 4999999999876 32 233455555778899999999999999
Q ss_pred HHHHhh
Q 032030 138 FTLSIT 143 (148)
Q Consensus 138 ~l~~~~ 143 (148)
+|.+++
T Consensus 187 ~L~~~L 192 (356)
T PRK01889 187 VLAAWL 192 (356)
T ss_pred HHHHHh
Confidence 998876
No 126
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.87 E-value=7.5e-05 Score=54.48 Aligned_cols=98 Identities=15% Similarity=0.073 Sum_probs=62.2
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc--------c--cCCCCcceeeEEEEecCCCCCchhhh-
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP--------R--KGGPGITQADLLVINKTDLASAIGAD- 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~--------~--~~~~qi~~ADivViNK~DL~~~~~~~- 108 (148)
.+.+.+.+|.|.-....+. -..+|.++++.|......+. . ...+..+ -++|.||+|+.+. ..
T Consensus 45 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p--iilv~nK~Dl~~~--~~~ 120 (174)
T smart00174 45 PVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP--IILVGTKLDLRED--KST 120 (174)
T ss_pred EEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC--EEEEecChhhhhC--hhh
Confidence 4567788888864221111 13578899999987653211 0 1123455 6999999999763 21
Q ss_pred -------------HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 109 -------------LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 109 -------------l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+...+..++.+ ..+++++||++|.|++++|+.++-
T Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~lf~~l~~ 169 (174)
T smart00174 121 LRELSKQKQEPVTYEQGEALAKRIG-AVKYLECSALTQEGVREVFEEAIR 169 (174)
T ss_pred hhhhhcccCCCccHHHHHHHHHHcC-CcEEEEecCCCCCCHHHHHHHHHH
Confidence 122233444333 347899999999999999998764
No 127
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.86 E-value=3.7e-05 Score=55.50 Aligned_cols=97 Identities=13% Similarity=0.080 Sum_probs=59.3
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------cc-CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RK-GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~-~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+-+++|.|......+. -..+|..+++.|+.....+. .. .....+ -++|.||+|+.+.-....
T Consensus 48 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--ii~v~nK~Dl~~~~~~~~ 125 (164)
T smart00173 48 CLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP--IVLVGNKCDLESERVVST 125 (164)
T ss_pred EEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECccccccceEcH
Confidence 445567787753211111 13467889999987643210 00 111334 478999999976410122
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+...+..+..+ .+++++||++|.|++++++++.
T Consensus 126 ~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 126 EEGKELARQWG--CPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred HHHHHHHHHcC--CEEEEeecCCCCCHHHHHHHHH
Confidence 34444455433 7899999999999999999876
No 128
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.86 E-value=6.7e-05 Score=54.71 Aligned_cols=77 Identities=18% Similarity=0.085 Sum_probs=50.8
Q ss_pred cCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
.+|.++++.|+...+.+.. .....++ -++|.||+|+.+.-....+...+..+.. ..+++++||++|
T Consensus 75 ~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p--~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~ 150 (167)
T cd01867 75 GAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE--RMLVGNKCDMEEKRVVSKEEGEALADEY--GIKFLETSAKAN 150 (167)
T ss_pred CCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc--EEEEEECcccccccCCCHHHHHHHHHHc--CCEEEEEeCCCC
Confidence 5788899999876533111 0112233 5899999999854111223444555533 358999999999
Q ss_pred CCHHHHHHhhh
Q 032030 134 IGIIFTLSITH 144 (148)
Q Consensus 134 ~gi~~l~~~~~ 144 (148)
.|++++|+++.
T Consensus 151 ~~v~~~~~~i~ 161 (167)
T cd01867 151 INVEEAFFTLA 161 (167)
T ss_pred CCHHHHHHHHH
Confidence 99999998764
No 129
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.85 E-value=3.9e-05 Score=55.64 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=51.2
Q ss_pred cCceEEEEEeCCCCCCc---ccc-------CCCCcceeeEEEEecCCCCCchhhhH-HHHHHHHHhcCCCCcEEEEEecC
Q 032030 64 LADYIIYIIDVSGGDKI---PRK-------GGPGITQADLLVINKTDLASAIGADL-AVMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~---~~~-------~~~qi~~ADivViNK~DL~~~~~~~l-~~~~~~i~~~np~a~vi~tSa~~ 132 (148)
.+|.+++++|+...+.. ... ....++ -++|.||+|+.+. .++ ....+.+.+..+ .+++++||++
T Consensus 79 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~--~i~v~NK~D~~~~--~~i~~~~~~~~~~~~~-~~~~~~Sa~~ 153 (169)
T cd04114 79 SANALILTYDITCEESFRCLPEWLREIEQYANNKVI--TILVGNKIDLAER--REVSQQRAEEFSDAQD-MYYLETSAKE 153 (169)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe--EEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEeeCCC
Confidence 46888999998765321 110 112333 4999999999765 332 233344444444 7899999999
Q ss_pred CCCHHHHHHhhh
Q 032030 133 VIGIIFTLSITH 144 (148)
Q Consensus 133 g~gi~~l~~~~~ 144 (148)
|.|++++|+++.
T Consensus 154 ~~gv~~l~~~i~ 165 (169)
T cd04114 154 SDNVEKLFLDLA 165 (169)
T ss_pred CCCHHHHHHHHH
Confidence 999999999876
No 130
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.83 E-value=4.8e-05 Score=54.61 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=59.4
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCc----------cccCC-----CCcceeeEEEEecCCCCCch
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKI----------PRKGG-----PGITQADLLVINKTDLASAI 105 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~----------~~~~~-----~qi~~ADivViNK~DL~~~~ 105 (148)
+.+-+.+|.|.-..... .-..+|.++.++|..+.... ..... .+.+ -++|.||+|+.++.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~~ 126 (168)
T cd04119 49 VRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIV--VVVCANKIDLTKHR 126 (168)
T ss_pred EEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCce--EEEEEEchhccccc
Confidence 44556666664211001 11357888999998764221 01111 2344 69999999997431
Q ss_pred hhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 106 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 106 ~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
....+...+..++.+ .+++++||++|.|++++++++.
T Consensus 127 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~ 163 (168)
T cd04119 127 AVSEDEGRLWAESKG--FKYFETSACTGEGVNEMFQTLF 163 (168)
T ss_pred ccCHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHHH
Confidence 122334444455433 6899999999999999999876
No 131
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.81 E-value=4.7e-05 Score=56.02 Aligned_cols=100 Identities=13% Similarity=0.024 Sum_probs=59.1
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc-------cc--CCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP-------RK--GGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~-------~~--~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
.+.+.+++++|..-...+ ....++.++++.|........ .. .........++++||+|+...-....+
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~ 127 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTE 127 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHH
Confidence 355678888885321111 113467788999987653210 00 001112237999999999743001112
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
......+.. +.+++++||++|.|+++++.++.
T Consensus 128 ~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 128 EGKELAESW--GAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 233333332 36899999999999999998874
No 132
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.81 E-value=6.2e-05 Score=54.54 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=51.2
Q ss_pred cCceEEEEEeCCCCCCcc----------c-cC---CCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEE
Q 032030 64 LADYIIYIIDVSGGDKIP----------R-KG---GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 129 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~----------~-~~---~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tS 129 (148)
.+|.+++++|+....... . .. +..++ -++|+||+|+..+.....+.+....+. ....+++++|
T Consensus 72 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~S 148 (172)
T cd01862 72 GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFP--FVVLGNKIDLEEKRQVSTKKAQQWCQS-NGNIPYFETS 148 (172)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCce--EEEEEECcccccccccCHHHHHHHHHH-cCCceEEEEE
Confidence 468889999987653210 0 00 12445 478899999984300223445555543 3346899999
Q ss_pred ecCCCCHHHHHHhhh
Q 032030 130 VGWVIGIIFTLSITH 144 (148)
Q Consensus 130 a~~g~gi~~l~~~~~ 144 (148)
+++|.|++++++++.
T Consensus 149 a~~~~gv~~l~~~i~ 163 (172)
T cd01862 149 AKEAINVEQAFETIA 163 (172)
T ss_pred CCCCCCHHHHHHHHH
Confidence 999999999998865
No 133
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.79 E-value=5.8e-05 Score=63.57 Aligned_cols=99 Identities=19% Similarity=0.184 Sum_probs=63.2
Q ss_pred CEEEEecCCceeee--------eec--cccCceEEEEEeCCCCC--C-------ccc---cCCCC-cceeeEEEEecCCC
Q 032030 45 DLLLCESGGDNLAA--------NFS--RELADYIIYIIDVSGGD--K-------IPR---KGGPG-ITQADLLVINKTDL 101 (148)
Q Consensus 45 D~IliEtsG~~~~~--------~~~--~~~~d~~i~vvDa~~~~--~-------~~~---~~~~q-i~~ADivViNK~DL 101 (148)
.++|+.+.|+.-.+ .|. -..+|.+++|+|+...+ + +.. .+... .....++|+||+|+
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl 287 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL 287 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence 37899999974321 111 13468899999987321 1 000 01110 12236999999999
Q ss_pred CCchhhhHHHHHHHHHhcCCC-CcEEEEEecCCCCHHHHHHhhhh
Q 032030 102 ASAIGADLAVMERDALRMRDG-GPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 102 ~~~~~~~l~~~~~~i~~~np~-a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+. .++....+.+++..+. .+++++||+++.|+++|++++.-
T Consensus 288 ~~~--~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~ 330 (390)
T PRK12298 288 LDE--EEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMT 330 (390)
T ss_pred CCh--HHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHH
Confidence 876 6655444444443333 48999999999999999988754
No 134
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.79 E-value=8.4e-05 Score=56.11 Aligned_cols=97 Identities=10% Similarity=0.002 Sum_probs=59.5
Q ss_pred CCEEEEecCCceeeee---eccccCceEEEEEeCCCCCCcc----------cc-CCCCcceeeEEEEecCCCCCchhhh-
Q 032030 44 ADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIP----------RK-GGPGITQADLLVINKTDLASAIGAD- 108 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~---~~~~~~d~~i~vvDa~~~~~~~----------~~-~~~qi~~ADivViNK~DL~~~~~~~- 108 (148)
..+.++.+.|.--... .....+|.+++|+|+.+...+. .. ....++ -++|+||+|+.... ..
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--iilv~NK~Dl~~~~-~~v 123 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVP--IVVVGNKADSLEEE-RQV 123 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc--EEEEEEcccccccc-ccc
Confidence 4556777777432111 1124678999999987653211 00 112344 69999999997630 11
Q ss_pred -HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 109 -LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 109 -l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+...+.. ......+++++||++|.|++++++++.
T Consensus 124 ~~~~~~~~~-~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 124 PAKDALSTV-ELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred cHHHHHHHH-HhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 12222222 223457899999999999999999875
No 135
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.79 E-value=2.9e-05 Score=57.46 Aligned_cols=76 Identities=20% Similarity=0.076 Sum_probs=51.2
Q ss_pred cCceEEEEEeCCCCCCcc----------c-cCCCCcceeeEEEEecCCCCCchhhhH--HHHHHHHHhcCCCCcEEEEEe
Q 032030 64 LADYIIYIIDVSGGDKIP----------R-KGGPGITQADLLVINKTDLASAIGADL--AVMERDALRMRDGGPFIFAQV 130 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~----------~-~~~~qi~~ADivViNK~DL~~~~~~~l--~~~~~~i~~~np~a~vi~tSa 130 (148)
.+|.++++.|..+...+. . ...+.++ -++|.||+|+.+. ..+ +...+..++. +.+++++||
T Consensus 73 ~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p--iilvgNK~Dl~~~--~~v~~~~~~~~a~~~--~~~~~e~Sa 146 (172)
T cd04141 73 CGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP--LVLVGNKVDLESQ--RQVTTEEGRNLAREF--NCPFFETSA 146 (172)
T ss_pred cCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC--EEEEEEChhhhhc--CccCHHHHHHHHHHh--CCEEEEEec
Confidence 467889999987653211 1 1112344 6999999998654 222 2333444433 479999999
Q ss_pred cCCCCHHHHHHhhhh
Q 032030 131 GWVIGIIFTLSITHY 145 (148)
Q Consensus 131 ~~g~gi~~l~~~~~~ 145 (148)
++|.|++++|++++-
T Consensus 147 ~~~~~v~~~f~~l~~ 161 (172)
T cd04141 147 ALRHYIDDAFHGLVR 161 (172)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999999864
No 136
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.78 E-value=4.4e-05 Score=65.62 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=52.2
Q ss_pred EEEEEeCCCCCCcccc---C---CCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcC--CCCcEEEEEecCCCCHHHH
Q 032030 68 IIYIIDVSGGDKIPRK---G---GPGITQADLLVINKTDLASAIGADLAVMERDALRMR--DGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 68 ~i~vvDa~~~~~~~~~---~---~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~n--p~a~vi~tSa~~g~gi~~l 139 (148)
.+.||||++|-+-+.. + ...++ -+-|+||+||... +.+++.+.++..- +....+.+|||||.|++++
T Consensus 103 alLvVDAsQGveAQTlAN~YlAle~~Le--IiPViNKIDLP~A---dpervk~eIe~~iGid~~dav~~SAKtG~gI~~i 177 (603)
T COG0481 103 ALLVVDASQGVEAQTLANVYLALENNLE--IIPVLNKIDLPAA---DPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDV 177 (603)
T ss_pred cEEEEECccchHHHHHHHHHHHHHcCcE--EEEeeecccCCCC---CHHHHHHHHHHHhCCCcchheeEecccCCCHHHH
Confidence 4889999998653221 1 12344 5779999999764 5667777776544 5567799999999999999
Q ss_pred HHhhh
Q 032030 140 LSITH 144 (148)
Q Consensus 140 ~~~~~ 144 (148)
++.+.
T Consensus 178 Le~Iv 182 (603)
T COG0481 178 LEAIV 182 (603)
T ss_pred HHHHH
Confidence 98753
No 137
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.78 E-value=4.3e-05 Score=54.98 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=60.4
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------cc-CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RK-GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~-~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+-+++|.|.-....+. -..+|.+++++|+....... .. ....++ -++++||+|+.+.-....
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--iiiv~NK~Dl~~~~~~~~ 127 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP--MILVGNKADLEHQRKVSR 127 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC--EEEEeeCccccccceecH
Confidence 345567777743211111 13568889999987643210 00 112344 588999999976411122
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
+...+..+.. +.+++++||++|.|++++|+++...
T Consensus 128 ~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 128 EEGQELARKL--KIPYIETSAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred HHHHHHHHHc--CCcEEEeeCCCCCCHHHHHHHHHHh
Confidence 3444444432 3589999999999999999988643
No 138
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.78 E-value=6.1e-05 Score=54.13 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=61.0
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc---c------cCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP---R------KGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~---~------~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
.+++.+.++.|.-....+. -..+|.++.|.|+....... . .....++ -++|+||+|+.++.....+
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p--~iiv~nK~Dl~~~~~v~~~ 127 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP--MVLVQTKIDLLDQAVITNE 127 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--EEEEEEChhcccccCCCHH
Confidence 4567777888842111110 13568888999986543211 0 0112344 5999999999764111223
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+..+..+.. +.+++++||++|.|+++++++++
T Consensus 128 ~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 128 EAEALAKRL--QLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred HHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHH
Confidence 444445543 35899999999999999999875
No 139
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=6.6e-05 Score=57.38 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=53.4
Q ss_pred cCceEEEEEeCCCCCCc----------cccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKI----------PRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~----------~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
.++..|.|.|..+.+.+ +...++.+- -.+|.||+||.+.-.-+.+....+.. ..++..+.||||||
T Consensus 77 gA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~v--ialvGNK~DL~~~R~V~~~ea~~yAe--~~gll~~ETSAKTg 152 (200)
T KOG0092|consen 77 GANAAIVVYDITDEESFEKAKNWVKELQRQASPNIV--IALVGNKADLLERREVEFEEAQAYAE--SQGLLFFETSAKTG 152 (200)
T ss_pred CCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeE--EEEecchhhhhhcccccHHHHHHHHH--hcCCEEEEEecccc
Confidence 34556888998776432 111222222 25789999999842245566777776 47789999999999
Q ss_pred CCHHHHHHhhh
Q 032030 134 IGIIFTLSITH 144 (148)
Q Consensus 134 ~gi~~l~~~~~ 144 (148)
.|++++|..++
T Consensus 153 ~Nv~~if~~Ia 163 (200)
T KOG0092|consen 153 ENVNEIFQAIA 163 (200)
T ss_pred cCHHHHHHHHH
Confidence 99999998765
No 140
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.77 E-value=5.8e-05 Score=53.88 Aligned_cols=78 Identities=17% Similarity=0.120 Sum_probs=50.2
Q ss_pred cCceEEEEEeCCCCCCc----------ccc-CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecC
Q 032030 64 LADYIIYIIDVSGGDKI----------PRK-GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~----------~~~-~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~ 132 (148)
.+|..+.++|......+ ... ....++ -++|.||+|+.+.. ...+...+..+.. ..+++++||++
T Consensus 72 ~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p--iivv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~ 146 (162)
T cd04138 72 TGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP--MVLVGNKCDLAART-VSSRQGQDLAKSY--GIPYIETSAKT 146 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECcccccce-ecHHHHHHHHHHh--CCeEEEecCCC
Confidence 46777888887654211 000 112344 58999999997640 1223344444433 35899999999
Q ss_pred CCCHHHHHHhhhhh
Q 032030 133 VIGIIFTLSITHYI 146 (148)
Q Consensus 133 g~gi~~l~~~~~~~ 146 (148)
|.|+++++++++..
T Consensus 147 ~~gi~~l~~~l~~~ 160 (162)
T cd04138 147 RQGVEEAFYTLVRE 160 (162)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998754
No 141
>PRK12288 GTPase RsgA; Reviewed
Probab=97.77 E-value=6.5e-05 Score=62.34 Aligned_cols=49 Identities=18% Similarity=0.041 Sum_probs=36.8
Q ss_pred eEEEEecCCCCCchhhhHHHH---HHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 92 DLLVINKTDLASAIGADLAVM---ERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~---~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
-++|+||+||.++ .+.+.+ .+.++. .+.+++.+||+++.|+++|++++.
T Consensus 153 ~VIVlNK~DL~~~--~~~~~~~~~~~~y~~--~g~~v~~vSA~tg~GideL~~~L~ 204 (347)
T PRK12288 153 PLIVLNKIDLLDD--EGRAFVNEQLDIYRN--IGYRVLMVSSHTGEGLEELEAALT 204 (347)
T ss_pred EEEEEECccCCCc--HHHHHHHHHHHHHHh--CCCeEEEEeCCCCcCHHHHHHHHh
Confidence 4899999999886 543333 333333 346999999999999999998764
No 142
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.76 E-value=0.00014 Score=51.22 Aligned_cols=77 Identities=17% Similarity=0.060 Sum_probs=51.5
Q ss_pred cCceEEEEEeCCCCCCc---c-------ccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKI---P-------RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~---~-------~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
.+|.+++++|+.+.+.. . .......+ -++++||+|+.++.....+.+.+..+. ...+++.+|+++|
T Consensus 72 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~ 147 (159)
T cd00154 72 GAHGAILVYDITNRESFENLDKWLKELKEYAPENIP--IILVGNKIDLEDQRQVSTEEAQQFAKE--NGLLFFETSAKTG 147 (159)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc--EEEEEEcccccccccccHHHHHHHHHH--cCCeEEEEecCCC
Confidence 46889999999764321 0 01112355 489999999963211233445555543 3578999999999
Q ss_pred CCHHHHHHhhh
Q 032030 134 IGIIFTLSITH 144 (148)
Q Consensus 134 ~gi~~l~~~~~ 144 (148)
.|++++++++.
T Consensus 148 ~~i~~~~~~i~ 158 (159)
T cd00154 148 ENVEELFQSLA 158 (159)
T ss_pred CCHHHHHHHHh
Confidence 99999999864
No 143
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.76 E-value=8.2e-05 Score=55.44 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=53.3
Q ss_pred cCceEEEEEeCCCCCCccc-------c-CC---CCcceeeEEEEecCCCCCchhhhHHHHHHHHH--hcC--CCCcEEEE
Q 032030 64 LADYIIYIIDVSGGDKIPR-------K-GG---PGITQADLLVINKTDLASAIGADLAVMERDAL--RMR--DGGPFIFA 128 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~-------~-~~---~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~--~~n--p~a~vi~t 128 (148)
..|.+|+|+|+.....+.. . .. ...| -+|+.||.|+.+. ...+.+.+.+. .+. ....++.+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~p--iLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~ 156 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIP--ILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSC 156 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSE--EEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEE
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccce--EEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEee
Confidence 4577899999986543110 0 11 1345 5788899999876 45556665553 333 34578999
Q ss_pred EecCCCCHHHHHHhhh
Q 032030 129 QVGWVIGIIFTLSITH 144 (148)
Q Consensus 129 Sa~~g~gi~~l~~~~~ 144 (148)
||.+|.|+.+-++|+.
T Consensus 157 sa~~g~Gv~e~l~WL~ 172 (175)
T PF00025_consen 157 SAKTGEGVDEGLEWLI 172 (175)
T ss_dssp BTTTTBTHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHH
Confidence 9999999999999974
No 144
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.76 E-value=8e-05 Score=56.30 Aligned_cols=98 Identities=19% Similarity=0.100 Sum_probs=60.2
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------c--cC--CCCcceeeEEEEecCCCCCchh
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------R--KG--GPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~--~~--~~qi~~ADivViNK~DL~~~~~ 106 (148)
+.+.+.++.|.-....+. -..+|.+++++|......+. . .. ...++ -++|.||+|+.+...
T Consensus 50 ~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p--iilv~NK~Dl~~~~~ 127 (201)
T cd04107 50 VRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP--CLLLANKCDLKKRLA 127 (201)
T ss_pred EEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCc--EEEEEECCCcccccc
Confidence 345566666642111111 13568889999987643210 0 01 12344 599999999973211
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+.+.+..+..+ ..+++++||++|.|++++|+++.
T Consensus 128 ~~~~~~~~~~~~~~-~~~~~e~Sak~~~~v~e~f~~l~ 164 (201)
T cd04107 128 KDGEQMDQFCKENG-FIGWFETSAKEGINIEEAMRFLV 164 (201)
T ss_pred cCHHHHHHHHHHcC-CceEEEEeCCCCCCHHHHHHHHH
Confidence 33345666665433 35899999999999999999875
No 145
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.75 E-value=7.1e-05 Score=55.78 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=58.1
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhH-
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADL- 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l- 109 (148)
+.+-+.++.|....... .-..+|.+++|+|......+. .......+ -+++.||+|+.+. ...
T Consensus 49 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~--~ivv~nK~Dl~~~--~~v~ 124 (188)
T cd04125 49 IKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVI--KVIVANKSDLVNN--KVVD 124 (188)
T ss_pred EEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe--EEEEEECCCCccc--ccCC
Confidence 44456677774211100 013578899999987653211 11112233 4889999999854 322
Q ss_pred -HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 -AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 -~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+...+..+. .+.+++.+||++|.|++++|++++-
T Consensus 125 ~~~~~~~~~~--~~~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 125 SNIAKSFCDS--LNIPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred HHHHHHHHHH--cCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 233333333 2458999999999999999998764
No 146
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.75 E-value=6.8e-05 Score=57.43 Aligned_cols=97 Identities=10% Similarity=-0.026 Sum_probs=60.0
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc---c------cCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP---R------KGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~---~------~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
.+.+-+.+++|.-....+. -..+|.+++|.|......+. . ...+.++ -++|.||+||... ....
T Consensus 43 ~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~p--iilvgNK~Dl~~~--~v~~ 118 (200)
T smart00176 43 PIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIP--IVLCGNKVDVKDR--KVKA 118 (200)
T ss_pred EEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC--EEEEEECcccccc--cCCH
Confidence 4556677777753211111 13568889999998764321 0 1112344 6899999998653 2111
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+..+..+. ...+++.+||++|.|++++|++++-
T Consensus 119 ~~~~~~~~--~~~~~~e~SAk~~~~v~~~F~~l~~ 151 (200)
T smart00176 119 KSITFHRK--KNLQYYDISAKSNYNFEKPFLWLAR 151 (200)
T ss_pred HHHHHHHH--cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 22233332 3468999999999999999999874
No 147
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.75 E-value=5.7e-05 Score=64.59 Aligned_cols=89 Identities=22% Similarity=0.200 Sum_probs=58.2
Q ss_pred CCEEEEecCCceeeee------e-----ccccCceEEEEEeCCCCCCccc---c-CCCCcceeeEEEEecCCCCCchhhh
Q 032030 44 ADLLLCESGGDNLAAN------F-----SRELADYIIYIIDVSGGDKIPR---K-GGPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~------~-----~~~~~d~~i~vvDa~~~~~~~~---~-~~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
..+.++.|.|.-.... + .-..+|.+++|+|+..+..... . .....+ -++|+||+|+.+. ..
T Consensus 263 ~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~p--iiiV~NK~DL~~~--~~ 338 (449)
T PRK05291 263 IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKP--VIVVLNKADLTGE--ID 338 (449)
T ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCC--cEEEEEhhhcccc--ch
Confidence 4567788888632110 0 1134788999999976542111 0 012233 5999999999876 43
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 109 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 109 l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.. ..+..+++++||++|.|+++|++++.
T Consensus 339 ~~--------~~~~~~~i~iSAktg~GI~~L~~~L~ 366 (449)
T PRK05291 339 LE--------EENGKPVIRISAKTGEGIDELREAIK 366 (449)
T ss_pred hh--------hccCCceEEEEeeCCCCHHHHHHHHH
Confidence 22 23446889999999999999998874
No 148
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.75 E-value=0.00014 Score=64.32 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=59.4
Q ss_pred CEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHHHH
Q 032030 45 DLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVMERD 115 (148)
Q Consensus 45 D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~ 115 (148)
.+.|+.|.|-.-...+ .....|..+.|+|+..+...+. .....++ -++++||+|+.+. ..+++.+.
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP--iIVviNKiDl~~~---~~e~v~~~ 210 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP--IIVAINKIDKPEA---NPDRVKQE 210 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC--EEEEEECcccccC---CHHHHHHH
Confidence 4566677774311111 1235688899999887643111 1112455 6999999999653 22334444
Q ss_pred HHhc-------CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 116 ALRM-------RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 116 i~~~-------np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+++. ....+++++||++|.|++++++++..
T Consensus 211 L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 211 LSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 3322 22458999999999999999998754
No 149
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.74 E-value=9.2e-05 Score=54.37 Aligned_cols=98 Identities=16% Similarity=0.076 Sum_probs=61.7
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc-------cc--CC--CCcceeeEEEEecCCCCCchhhh
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP-------RK--GG--PGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~-------~~--~~--~qi~~ADivViNK~DL~~~~~~~ 108 (148)
++.+.++++.|..-....+ -..+|.+++|+|+.....+. .. .. ...+ -++|+||+|+.+. ..
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p--iliv~NK~Dl~~~--~~ 117 (167)
T cd04161 42 KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP--ILVLANKQDKKNA--LL 117 (167)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc--EEEEEeCCCCcCC--CC
Confidence 5667788888853211111 13678899999987653221 00 11 1334 6999999999776 43
Q ss_pred HHHHHHHHH--hc----CCCCcEEEEEecCC------CCHHHHHHhhh
Q 032030 109 LAVMERDAL--RM----RDGGPFIFAQVGWV------IGIIFTLSITH 144 (148)
Q Consensus 109 l~~~~~~i~--~~----np~a~vi~tSa~~g------~gi~~l~~~~~ 144 (148)
.+.+.+.+. .+ +...+++++||++| .|+.+-|+|+.
T Consensus 118 ~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 118 GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 344443321 21 22347888999998 89999999984
No 150
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.74 E-value=8.7e-05 Score=55.01 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=60.4
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCccc----c------CCCCcceeeEEEEecCCCCCchh----
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPR----K------GGPGITQADLLVINKTDLASAIG---- 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~~----~------~~~qi~~ADivViNK~DL~~~~~---- 106 (148)
+.+.+.+|.|......+. -..+|.++++.|......+.. . ..+.+| -++|.||+|+.+...
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~~~~~~~ 126 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTP--IMLVGLKTDLRKDKNLDRK 126 (187)
T ss_pred EEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEeChhhhhCccccCC
Confidence 456677777743111111 135788999999876532110 1 123455 589999999976300
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
-..+...+..+..+ ..+++.+||++|.|++++|+.++-
T Consensus 127 v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~~f~~l~~ 164 (187)
T cd04132 127 VTPAQAESVAKKQG-AFAYLECSAKTMENVEEVFDTAIE 164 (187)
T ss_pred cCHHHHHHHHHHcC-CcEEEEccCCCCCCHHHHHHHHHH
Confidence 01234444444332 227899999999999999988764
No 151
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.74 E-value=0.00018 Score=52.42 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=58.2
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhh--
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGAD-- 108 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~-- 108 (148)
+.+-++++.|........ -..+|.++++.|......+. ....+..+ -++|.||+|+.+. ..
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~p--iivv~nK~Dl~~~--~~~~ 123 (174)
T cd04135 48 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP--YLLVGTQIDLRDD--PKTL 123 (174)
T ss_pred EEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC--EEEEeEchhhhcC--hhhH
Confidence 445567788754321111 13567888888887653211 01123445 4889999999654 21
Q ss_pred ------------HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 109 ------------LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 109 ------------l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+...+..++.+ ..+++.+||++|.|++++|+.++
T Consensus 124 ~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~gi~~~f~~~~ 170 (174)
T cd04135 124 ARLNDMKEKPVTVEQGQKLAKEIG-AHCYVECSALTQKGLKTVFDEAI 170 (174)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcC-CCEEEEecCCcCCCHHHHHHHHH
Confidence 122333444333 34789999999999999998764
No 152
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.74 E-value=9.7e-05 Score=64.05 Aligned_cols=51 Identities=22% Similarity=0.187 Sum_probs=38.6
Q ss_pred eEEEEecCCCCCchhhhHH-HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 92 DLLVINKTDLASAIGADLA-VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~-~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
-+||+||+|+.+. .++. .+.+.+++. ..+++++||+++.|+++|+.++.-.
T Consensus 287 ~IVVlNKiDL~da--~el~e~l~~~l~~~--g~~Vf~ISA~tgeGLdEL~~~L~el 338 (500)
T PRK12296 287 RLVVLNKIDVPDA--RELAEFVRPELEAR--GWPVFEVSAASREGLRELSFALAEL 338 (500)
T ss_pred EEEEEECccchhh--HHHHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999765 4433 344444433 4689999999999999999987644
No 153
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.72 E-value=9e-05 Score=55.18 Aligned_cols=77 Identities=16% Similarity=0.022 Sum_probs=50.6
Q ss_pred ceEEEEEeCCCCCCcc-----cc-CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCC--CCcEEEEEecCCCCHH
Q 032030 66 DYIIYIIDVSGGDKIP-----RK-GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRD--GGPFIFAQVGWVIGII 137 (148)
Q Consensus 66 d~~i~vvDa~~~~~~~-----~~-~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np--~a~vi~tSa~~g~gi~ 137 (148)
+..+.++|+....... .. ....++ -++++||+|+.+. .+.++..+.+++... ..+++++||++|.|++
T Consensus 108 ~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~--~iiv~nK~Dl~~~--~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~ 183 (196)
T PRK00454 108 KGVVLLIDSRHPLKELDLQMIEWLKEYGIP--VLIVLTKADKLKK--GERKKQLKKVRKALKFGDDEVILFSSLKKQGID 183 (196)
T ss_pred eEEEEEEecCCCCCHHHHHHHHHHHHcCCc--EEEEEECcccCCH--HHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHH
Confidence 5567788876543211 10 111333 5899999999887 665554443432221 5799999999999999
Q ss_pred HHHHhhhhh
Q 032030 138 FTLSITHYI 146 (148)
Q Consensus 138 ~l~~~~~~~ 146 (148)
++++++.-.
T Consensus 184 ~l~~~i~~~ 192 (196)
T PRK00454 184 ELRAAIAKW 192 (196)
T ss_pred HHHHHHHHH
Confidence 999987643
No 154
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.71 E-value=0.00016 Score=52.89 Aligned_cols=97 Identities=16% Similarity=0.117 Sum_probs=59.2
Q ss_pred CCEEEEecCCcee----eeeeccccCceEEEEEeCCCCCCcc---cc-------CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIP---RK-------GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~----~~~~~~~~~d~~i~vvDa~~~~~~~---~~-------~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.+.++.|.-- ...+ -..+|.+++++|+....... .. ..+.++ -++|.||+|+.+......
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~-~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--vivv~nK~Dl~~~~~~~~ 129 (168)
T cd01866 53 IKLQIWDTAGQESFRSITRSY-YRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT--IMLIGNKCDLESRREVSY 129 (168)
T ss_pred EEEEEEECCCcHHHHHHHHHH-hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc--EEEEEECcccccccCCCH
Confidence 3455666666321 0001 13568899999987542211 10 112344 599999999985411122
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+......++. ..+++++||++|.|++++|.+++-
T Consensus 130 ~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 130 EEGEAFAKEH--GLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred HHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 3444445443 468999999999999999987754
No 155
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.71 E-value=7.5e-05 Score=56.14 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=57.2
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc-----c-cCCCCcceeeEEEEecCCCCCch-hhhHHHH
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP-----R-KGGPGITQADLLVINKTDLASAI-GADLAVM 112 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~-----~-~~~~qi~~ADivViNK~DL~~~~-~~~l~~~ 112 (148)
+..+.++.|.|..-.... .-..+|.+++|+|+..+.... . .....++ -++|+||+|+.... ...++.+
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p--~iiv~NK~Dl~~~~~~~~~~~~ 141 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK--PIVVINKIDRPDARPEEVVDEV 141 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC--EEEEEECCCCCCCCHHHHHHHH
Confidence 456778889886421000 113578899999998753110 0 1112345 69999999997541 1123444
Q ss_pred HHHHHhc-----CCCCcEEEEEecCCCCHHHH
Q 032030 113 ERDALRM-----RDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 113 ~~~i~~~-----np~a~vi~tSa~~g~gi~~l 139 (148)
.+.+... ..+.+++++||++|.|+.+|
T Consensus 142 ~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 142 FDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 4444322 22568999999999887555
No 156
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.70 E-value=0.00013 Score=51.88 Aligned_cols=77 Identities=19% Similarity=0.123 Sum_probs=51.1
Q ss_pred CceEEEEEeCCCCCCcc-----cc-CCCCcceeeEEEEecCCCCCchhhhHHHHHHH----HHhcCCCCcEEEEEecCCC
Q 032030 65 ADYIIYIIDVSGGDKIP-----RK-GGPGITQADLLVINKTDLASAIGADLAVMERD----ALRMRDGGPFIFAQVGWVI 134 (148)
Q Consensus 65 ~d~~i~vvDa~~~~~~~-----~~-~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~----i~~~np~a~vi~tSa~~g~ 134 (148)
.+.++.++|........ .. ...+.+ .++++||+|+.+. .+....... ++...+..+++++|++++.
T Consensus 82 ~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~--vi~v~nK~D~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01876 82 LKGVVLLIDSRHGPTEIDLEMLDWLEELGIP--FLVVLTKADKLKK--SELAKALKEIKKELKLFEIDPPIILFSSLKGQ 157 (170)
T ss_pred hhEEEEEEEcCcCCCHhHHHHHHHHHHcCCC--EEEEEEchhcCCh--HHHHHHHHHHHHHHHhccCCCceEEEecCCCC
Confidence 45677888886552211 10 111233 6889999999876 554443333 3223567799999999999
Q ss_pred CHHHHHHhhhh
Q 032030 135 GIIFTLSITHY 145 (148)
Q Consensus 135 gi~~l~~~~~~ 145 (148)
|++++++++.-
T Consensus 158 ~~~~l~~~l~~ 168 (170)
T cd01876 158 GIDELRALIEK 168 (170)
T ss_pred CHHHHHHHHHH
Confidence 99999998864
No 157
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.70 E-value=6.4e-05 Score=55.11 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=61.1
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc-------ccc--CCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI-------PRK--GGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~-------~~~--~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+..+.+.++.|.......+ -..+|.+++|+|+.....+ ... ..+.++ -++|.||+|+.+. ...+
T Consensus 43 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p--iilv~NK~Dl~~~--~~~~ 118 (164)
T cd04162 43 DAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP--LVVLANKQDLPAA--RSVQ 118 (164)
T ss_pred CeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc--EEEEEeCcCCcCC--CCHH
Confidence 4556677777753221111 1357889999998765321 111 123455 5899999999776 4444
Q ss_pred HHHHHH--Hhc--CCCCcEEEEEecC------CCCHHHHHHhhh
Q 032030 111 VMERDA--LRM--RDGGPFIFAQVGW------VIGIIFTLSITH 144 (148)
Q Consensus 111 ~~~~~i--~~~--np~a~vi~tSa~~------g~gi~~l~~~~~ 144 (148)
.+.+.+ ..+ ....+++.+||++ ++|+.++|+.+.
T Consensus 119 ~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 119 EIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred HHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 433332 111 1245788999999 999999999875
No 158
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.69 E-value=0.00019 Score=61.05 Aligned_cols=97 Identities=22% Similarity=0.239 Sum_probs=59.0
Q ss_pred CCEEEEecCCceeee--------eecc--ccCceEEEEEeCCCCC--C-------cc---ccCCCC-cceeeEEEEecCC
Q 032030 44 ADLLLCESGGDNLAA--------NFSR--ELADYIIYIIDVSGGD--K-------IP---RKGGPG-ITQADLLVINKTD 100 (148)
Q Consensus 44 ~D~IliEtsG~~~~~--------~~~~--~~~d~~i~vvDa~~~~--~-------~~---~~~~~q-i~~ADivViNK~D 100 (148)
..++++.+.|+.-.+ .|.. ...+.+++|+|+...+ + +. ..+.+. ...--+||+||+|
T Consensus 206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~D 285 (424)
T PRK12297 206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMD 285 (424)
T ss_pred ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCC
Confidence 457888888873211 1111 2468899999986431 1 00 011111 1223699999999
Q ss_pred CCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 101 LASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 101 L~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
|... . +.+.+..+.+. .+++++||+++.|+++|++++.-.
T Consensus 286 L~~~--~--e~l~~l~~~l~--~~i~~iSA~tgeGI~eL~~~L~~~ 325 (424)
T PRK12297 286 LPEA--E--ENLEEFKEKLG--PKVFPISALTGQGLDELLYAVAEL 325 (424)
T ss_pred CcCC--H--HHHHHHHHHhC--CcEEEEeCCCCCCHHHHHHHHHHH
Confidence 8543 2 22333333322 589999999999999999987643
No 159
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.69 E-value=9.5e-05 Score=53.09 Aligned_cols=99 Identities=16% Similarity=0.104 Sum_probs=58.5
Q ss_pred CEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc---c----cc-CCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 45 DLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI---P----RK-GGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 45 D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~---~----~~-~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
.+.++++.|..-...+. -..+|.++.|.|......+ . .. ....-...-++++||+|+........+...
T Consensus 50 ~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~ 129 (161)
T cd01861 50 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGE 129 (161)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHH
Confidence 35677777743111010 1356888999998764321 1 10 011101337999999999543111223344
Q ss_pred HHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 114 RDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 114 ~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+.. +.+++++||++|.|++++++++.-
T Consensus 130 ~~~~~~--~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 130 KKAKEL--NAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred HHHHHh--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 444433 478999999999999999998754
No 160
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.67 E-value=0.00014 Score=50.77 Aligned_cols=50 Identities=24% Similarity=0.127 Sum_probs=38.3
Q ss_pred eeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 91 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 91 ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
..++++||.|+... ...+...+.+... +..+++++||++|.|++++++++
T Consensus 110 p~ivv~nK~D~~~~--~~~~~~~~~~~~~-~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 110 PIILVGNKIDLRDA--KLKTHVAFLFAKL-NGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred cEEEEEEcccCCcc--hhhHHHHHHHhhc-cCCceEEeecCCCCCHHHHHHHh
Confidence 37999999999876 4344454545443 44569999999999999999875
No 161
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.67 E-value=0.00012 Score=56.14 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=59.3
Q ss_pred CCEEEEecCCceee----eeeccccCceEEEEEeCCCCCCcc----------ccCC---CCcceeeEEEEecCCCCCchh
Q 032030 44 ADLLLCESGGDNLA----ANFSRELADYIIYIIDVSGGDKIP----------RKGG---PGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~----~~~~~~~~d~~i~vvDa~~~~~~~----------~~~~---~qi~~ADivViNK~DL~~~~~ 106 (148)
+.+.+.++.|.-.. ..+ -..+|.+++|+|......+. .... ...+ -++|.||+||...-.
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~-~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~p--iilVgNK~DL~~~~~ 126 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKY-IYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPL--VVLVGNKTDLEHNRT 126 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHH-hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCce--EEEEEECcccccccc
Confidence 45567777774321 111 13678999999987652211 0001 1122 478999999975310
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+...+..+.. +.+.+.+||++|.|++++|++++-
T Consensus 127 v~~~~~~~~~~~~--~~~~~~iSAktg~gv~~lf~~l~~ 163 (215)
T cd04109 127 VKDDKHARFAQAN--GMESCLVSAKTGDRVNLLFQQLAA 163 (215)
T ss_pred cCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHH
Confidence 1223444444432 368899999999999999998874
No 162
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.67 E-value=2.9e-05 Score=59.90 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=54.6
Q ss_pred CCCEEEEecCCcee--eeee-ccccCceEEEEEeCCCCC-----Cc-cc-c----CCCCcce-eeEEEEecCCCCCc--h
Q 032030 43 KADLLLCESGGDNL--AANF-SRELADYIIYIIDVSGGD-----KI-PR-K----GGPGITQ-ADLLVINKTDLASA--I 105 (148)
Q Consensus 43 ~~D~IliEtsG~~~--~~~~-~~~~~d~~i~vvDa~~~~-----~~-~~-~----~~~qi~~-ADivViNK~DL~~~--~ 105 (148)
++.+.++.|.|... ...+ ....+|..++|+|+..+. .. .. . ....... --++++||+|+.+. .
T Consensus 76 ~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~ 155 (219)
T cd01883 76 KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWS 155 (219)
T ss_pred CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccccccccc
Confidence 56788889998531 1111 113578999999998742 11 00 0 0001111 13669999999831 0
Q ss_pred hhhHHHHHHH----HHhcC---CCCcEEEEEecCCCCHH
Q 032030 106 GADLAVMERD----ALRMR---DGGPFIFAQVGWVIGII 137 (148)
Q Consensus 106 ~~~l~~~~~~----i~~~n---p~a~vi~tSa~~g~gi~ 137 (148)
.+..+.+.+. ++... ...+++++||++|.|++
T Consensus 156 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 156 EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1333444443 44332 24789999999999986
No 163
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.67 E-value=9.1e-05 Score=55.54 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=59.7
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc--------cc--CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP--------RK--GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~--------~~--~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..++.+.++.|.-....+ .-..+|.++.+.|......+. .. ..+.++ -++|.||+||... ...
T Consensus 47 ~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~p--iilvgNK~Dl~~~--~~~ 122 (189)
T cd04134 47 HIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK--LVLVALKCDLREA--RNE 122 (189)
T ss_pred EEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEEChhhccC--hhh
Confidence 355667777775321111 113467888888876543211 11 112334 6999999999765 322
Q ss_pred H--------------HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 110 A--------------VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 110 ~--------------~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
+ ...+..++. ...+++++||++|.|++++|++++-.
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~SAk~~~~v~e~f~~l~~~ 172 (189)
T cd04134 123 RDDLQRYGKHTISYEEGLAVAKRI-NALRYLECSAKLNRGVNEAFTEAARV 172 (189)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHc-CCCEEEEccCCcCCCHHHHHHHHHHH
Confidence 2 222333332 23678999999999999999998743
No 164
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.67 E-value=8.8e-05 Score=54.13 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=61.0
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchhhhH
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..++.++.|.|.... ..+ .-..+|.+++++|+.....+.. .....++ -++|+||+|+.+. ...
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p--viiv~nK~Dl~~~--~~~ 121 (166)
T cd01893 46 RVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP--IILVGNKSDLRDG--SSQ 121 (166)
T ss_pred eEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEEchhcccc--cch
Confidence 466778888886421 100 0135788899999876433211 1122344 6899999999875 331
Q ss_pred ---HH-HHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 ---AV-MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ---~~-~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+. +....+..+...+++++||++|.|++++|+.+.=
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 161 (166)
T cd01893 122 AGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQK 161 (166)
T ss_pred hHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHH
Confidence 12 2222222222248999999999999999987653
No 165
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.67 E-value=0.00017 Score=65.15 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=60.5
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVMER 114 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~ 114 (148)
..+.|+.|.|-.-.... .-..+|..+.|+|+..+...+. .....++ -++++||+|+.+. ..+++.+
T Consensus 295 ~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP--iIVViNKiDl~~~---~~e~v~~ 369 (742)
T CHL00189 295 QKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVP--IIVAINKIDKANA---NTERIKQ 369 (742)
T ss_pred eEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce--EEEEEECCCcccc---CHHHHHH
Confidence 45667777774311000 1135788999999987643111 1122345 6899999999764 2334444
Q ss_pred HHHh-------cCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 115 DALR-------MRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 115 ~i~~-------~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.++. +....+++++||++|.|+++|++++.
T Consensus 370 eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~ 406 (742)
T CHL00189 370 QLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETIL 406 (742)
T ss_pred HHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhh
Confidence 4432 22346899999999999999998864
No 166
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.66 E-value=0.00016 Score=64.01 Aligned_cols=97 Identities=22% Similarity=0.150 Sum_probs=61.2
Q ss_pred CCEEEEecCCceeeee-e--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHHH
Q 032030 44 ADLLLCESGGDNLAAN-F--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVMER 114 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~-~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~ 114 (148)
+.+.|+.|.|...... . .-..+|..++|+|+.++...+. .....++ -++|+||+|+.+. . .+...+
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip--iIiViNKiDl~~~--~-~~~~~~ 144 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE--IIPVINKIDLPSA--D-PERVKK 144 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC--EEEEEECcCCCcc--C-HHHHHH
Confidence 4567888888643100 0 1135788999999988743211 1112344 5899999999754 2 222323
Q ss_pred HHHhcC--CCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 115 DALRMR--DGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 115 ~i~~~n--p~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+++.. +..+++++||++|.|++++++++.-
T Consensus 145 el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~ 177 (595)
T TIGR01393 145 EIEEVIGLDASEAILASAKTGIGIEEILEAIVK 177 (595)
T ss_pred HHHHHhCCCcceEEEeeccCCCCHHHHHHHHHH
Confidence 333222 2246899999999999999998753
No 167
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.66 E-value=0.00014 Score=55.59 Aligned_cols=96 Identities=17% Similarity=0.104 Sum_probs=56.7
Q ss_pred CCCEEEEecCCceee--eee-ccccCceEEEEEeCCCCCCccc----cC--CCCcceeeEEEEecCCCCCchhhhHH---
Q 032030 43 KADLLLCESGGDNLA--ANF-SRELADYIIYIIDVSGGDKIPR----KG--GPGITQADLLVINKTDLASAIGADLA--- 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--~~~-~~~~~d~~i~vvDa~~~~~~~~----~~--~~qi~~ADivViNK~DL~~~~~~~l~--- 110 (148)
+..+.++.|.|.... ... .-..+|..++|+|+..+..... .. ....+ --++|+||+|+.+...+..+
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~-~iIvviNK~D~~~~~~~~~~~i~ 154 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIR-HVVVAVNKMDLVDYSEEVFEEIV 154 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCC-cEEEEEEchhcccCCHHHHHHHH
Confidence 457889999995311 111 1135789999999987642111 00 01112 13558999999753112222
Q ss_pred -HHHHHHHhcC-CCCcEEEEEecCCCCHHHH
Q 032030 111 -VMERDALRMR-DGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 111 -~~~~~i~~~n-p~a~vi~tSa~~g~gi~~l 139 (148)
.+.+.++.++ +..+++++||++|.|+++.
T Consensus 155 ~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 155 ADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 3334444444 4567999999999999753
No 168
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.65 E-value=0.0002 Score=65.12 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=60.2
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVMER 114 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~ 114 (148)
..+.|+.|.|-.....+ .-...|.+++|+|+..+...+. .....++ -++++||+|+.+. ..+++..
T Consensus 337 ~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP--iIVviNKiDl~~a---~~e~V~~ 411 (787)
T PRK05306 337 GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP--IIVAINKIDKPGA---NPDRVKQ 411 (787)
T ss_pred EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc--EEEEEECcccccc---CHHHHHH
Confidence 34567777775321111 1134688899999987632111 1112344 6999999999653 2233333
Q ss_pred HHH-------hcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 115 DAL-------RMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 115 ~i~-------~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+. .+....+++++||++|.|+++|++++..
T Consensus 412 eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 412 ELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred HHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 222 2234578999999999999999998754
No 169
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.65 E-value=0.00011 Score=53.38 Aligned_cols=76 Identities=16% Similarity=0.075 Sum_probs=50.4
Q ss_pred cCceEEEEEeCCCCCCc---c-------ccCCCCcceeeEEEEecCCCCCchhhhH--HHHHHHHHhcCCCCcEEEEEec
Q 032030 64 LADYIIYIIDVSGGDKI---P-------RKGGPGITQADLLVINKTDLASAIGADL--AVMERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~---~-------~~~~~qi~~ADivViNK~DL~~~~~~~l--~~~~~~i~~~np~a~vi~tSa~ 131 (148)
.+|.++++.|......+ . ...+..++ -++|.||.||..+ ..+ +......+..+ .+++++||+
T Consensus 72 ~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~--iilvgnK~Dl~~~--~~v~~~~~~~~~~~~~--~~~~e~Sa~ 145 (161)
T cd04117 72 RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQ--KILIGNKADEEQK--RQVGDEQGNKLAKEYG--MDFFETSAC 145 (161)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe--EEEEEECcccccc--cCCCHHHHHHHHHHcC--CEEEEEeCC
Confidence 46888999998654321 1 11112233 6899999999765 322 23334444333 678999999
Q ss_pred CCCCHHHHHHhhhh
Q 032030 132 WVIGIIFTLSITHY 145 (148)
Q Consensus 132 ~g~gi~~l~~~~~~ 145 (148)
+|.|++++|.+++-
T Consensus 146 ~~~~v~~~f~~l~~ 159 (161)
T cd04117 146 TNSNIKESFTRLTE 159 (161)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999999864
No 170
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.64 E-value=9.2e-05 Score=60.77 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=47.3
Q ss_pred CceEEEEEeCCCC---CCccc---------cCCC-CcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEec
Q 032030 65 ADYIIYIIDVSGG---DKIPR---------KGGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 65 ~d~~i~vvDa~~~---~~~~~---------~~~~-qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~ 131 (148)
.+.+++|||...+ ..++. .+.. -....-++|.||+|+.+. +-+.+.+..+ .-+...|+++||+
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~-~lq~~~V~pvsA~ 350 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAK-RLQNPHVVPVSAK 350 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHH-HcCCCcEEEeeec
Confidence 4567999998776 22111 0111 233446999999999643 2222333333 2233379999999
Q ss_pred CCCCHHHHHHhh
Q 032030 132 WVIGIIFTLSIT 143 (148)
Q Consensus 132 ~g~gi~~l~~~~ 143 (148)
+++|+++|++.+
T Consensus 351 ~~egl~~ll~~l 362 (366)
T KOG1489|consen 351 SGEGLEELLNGL 362 (366)
T ss_pred cccchHHHHHHH
Confidence 999999998764
No 171
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.64 E-value=0.00012 Score=55.48 Aligned_cols=78 Identities=21% Similarity=0.153 Sum_probs=53.2
Q ss_pred ccCceEEEEEeCCCCCCcc-------c--cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 032030 63 ELADYIIYIIDVSGGDKIP-------R--KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 63 ~~~d~~i~vvDa~~~~~~~-------~--~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
..+|.+++|.|......+. . ...+.++ -+||.||.||...-.-..+..+++.++. +.+++.+||++|
T Consensus 77 ~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~p--iilVGNK~DL~~~~~v~~~~~~~~a~~~--~~~~~e~SAk~g 152 (189)
T cd04121 77 RGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVP--KILVGNRLHLAFKRQVATEQAQAYAERN--GMTFFEVSPLCN 152 (189)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--EEEEEECccchhccCCCHHHHHHHHHHc--CCEEEEecCCCC
Confidence 3678899999987653211 0 1122344 5999999999653002234556666544 368999999999
Q ss_pred CCHHHHHHhhh
Q 032030 134 IGIIFTLSITH 144 (148)
Q Consensus 134 ~gi~~l~~~~~ 144 (148)
.|++++|++++
T Consensus 153 ~~V~~~F~~l~ 163 (189)
T cd04121 153 FNITESFTELA 163 (189)
T ss_pred CCHHHHHHHHH
Confidence 99999999875
No 172
>PLN03110 Rab GTPase; Provisional
Probab=97.64 E-value=0.00012 Score=56.29 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=49.5
Q ss_pred cCceEEEEEeCCCCCCc---cc-------cCCCCcceeeEEEEecCCCCCchhhhH--HHHHHHHHhcCCCCcEEEEEec
Q 032030 64 LADYIIYIIDVSGGDKI---PR-------KGGPGITQADLLVINKTDLASAIGADL--AVMERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~---~~-------~~~~qi~~ADivViNK~DL~~~~~~~l--~~~~~~i~~~np~a~vi~tSa~ 131 (148)
.++.++++.|......+ .. .....++ -++|.||+|+... .+. +....... ....+++++||+
T Consensus 84 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iiiv~nK~Dl~~~--~~~~~~~~~~l~~--~~~~~~~e~SA~ 157 (216)
T PLN03110 84 GAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV--IMMAGNKSDLNHL--RSVAEEDGQALAE--KEGLSFLETSAL 157 (216)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe--EEEEEEChhcccc--cCCCHHHHHHHHH--HcCCEEEEEeCC
Confidence 46778999998654321 10 0112333 6899999999654 222 22333322 235789999999
Q ss_pred CCCCHHHHHHhhhh
Q 032030 132 WVIGIIFTLSITHY 145 (148)
Q Consensus 132 ~g~gi~~l~~~~~~ 145 (148)
+|.|++++|++++-
T Consensus 158 ~g~~v~~lf~~l~~ 171 (216)
T PLN03110 158 EATNVEKAFQTILL 171 (216)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999998753
No 173
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.63 E-value=0.00031 Score=53.60 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=55.4
Q ss_pred CCCEEEEecCCcee--eeee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhh-HH--
Q 032030 43 KADLLLCESGGDNL--AANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGAD-LA-- 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~--~~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~-l~-- 110 (148)
+..+.|+.|.|..- .... .-..+|..++|+|+..+...+. .....++ .-++++||+|+.+. .+ .+
T Consensus 64 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~-~iIvviNK~D~~~~--~~~~~~~ 140 (195)
T cd01884 64 NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVP-YIVVFLNKADMVDD--EELLELV 140 (195)
T ss_pred CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-cEEEEEeCCCCCCc--HHHHHHH
Confidence 45679999999641 1111 1235799999999987643211 0011222 12588999999754 33 23
Q ss_pred --HHHHHHHhc--C-CCCcEEEEEecCCCCH
Q 032030 111 --VMERDALRM--R-DGGPFIFAQVGWVIGI 136 (148)
Q Consensus 111 --~~~~~i~~~--n-p~a~vi~tSa~~g~gi 136 (148)
++.+.++.. + .++|++++||++|.+.
T Consensus 141 ~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 141 EMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 344444432 2 2589999999999974
No 174
>PLN03108 Rab family protein; Provisional
Probab=97.62 E-value=0.00023 Score=54.40 Aligned_cols=77 Identities=19% Similarity=0.108 Sum_probs=50.9
Q ss_pred cCceEEEEEeCCCCCCcc---c-------cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKIP---R-------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~---~-------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
.+|.+++|+|+.....+. . ...+.++ -++|.||+||.+.-....+...+..+.. +.+++++||+++
T Consensus 78 ~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p--iiiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~ 153 (210)
T PLN03108 78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMT--IMLIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEASAKTA 153 (210)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc--EEEEEECccCccccCCCHHHHHHHHHHc--CCEEEEEeCCCC
Confidence 467789999987653211 0 1112333 5899999999763112234455555543 368999999999
Q ss_pred CCHHHHHHhhh
Q 032030 134 IGIIFTLSITH 144 (148)
Q Consensus 134 ~gi~~l~~~~~ 144 (148)
.|++++|++++
T Consensus 154 ~~v~e~f~~l~ 164 (210)
T PLN03108 154 QNVEEAFIKTA 164 (210)
T ss_pred CCHHHHHHHHH
Confidence 99999998764
No 175
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.62 E-value=0.00014 Score=52.87 Aligned_cols=77 Identities=8% Similarity=0.009 Sum_probs=49.8
Q ss_pred cCceEEEEEeCCCCCCc---ccc-----------CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEE
Q 032030 64 LADYIIYIIDVSGGDKI---PRK-----------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 129 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~---~~~-----------~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tS 129 (148)
.+|.++.+.|....... ... .+..++ -++|.||+|+.... ...+.+.+..++.+ ..+++++|
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~~-~~~~~~~~~~~~~~-~~~~~e~S 152 (170)
T cd04116 77 GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP--FVVLGNKNDIPERQ-VSTEEAQAWCRENG-DYPYFETS 152 (170)
T ss_pred CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc--EEEEEECccccccc-cCHHHHHHHHHHCC-CCeEEEEE
Confidence 45777888887654311 100 012344 58999999996430 12345556665433 35789999
Q ss_pred ecCCCCHHHHHHhhh
Q 032030 130 VGWVIGIIFTLSITH 144 (148)
Q Consensus 130 a~~g~gi~~l~~~~~ 144 (148)
|++|.|+.++|++++
T Consensus 153 a~~~~~v~~~~~~~~ 167 (170)
T cd04116 153 AKDATNVAAAFEEAV 167 (170)
T ss_pred CCCCCCHHHHHHHHH
Confidence 999999999999875
No 176
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.61 E-value=0.00015 Score=57.37 Aligned_cols=98 Identities=10% Similarity=0.034 Sum_probs=60.8
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------cc---------CCCCcceeeEEEEecCCC
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RK---------GGPGITQADLLVINKTDL 101 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~---------~~~qi~~ADivViNK~DL 101 (148)
+.+-+.+|+|.-....+ .-..+|.+++|.|....+.+. .. ....++ -+++.||+|+
T Consensus 48 ~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p--iIivgNK~Dl 125 (247)
T cd04143 48 YQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP--MVICGNKADR 125 (247)
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc--EEEEEECccc
Confidence 45557788885321111 113568889999987643210 00 112334 6999999999
Q ss_pred CCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 102 ASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 102 ~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..+-....+++.+.+... ...+++++||++|.|++++|++++
T Consensus 126 ~~~~~v~~~ei~~~~~~~-~~~~~~evSAktg~gI~elf~~L~ 167 (247)
T cd04143 126 DFPREVQRDEVEQLVGGD-ENCAYFEVSAKKNSNLDEMFRALF 167 (247)
T ss_pred hhccccCHHHHHHHHHhc-CCCEEEEEeCCCCCCHHHHHHHHH
Confidence 753112334555555432 346799999999999999998875
No 177
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.60 E-value=0.00017 Score=51.29 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=61.5
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCc----------cccCC-CCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKI----------PRKGG-PGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~----------~~~~~-~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+.++++.|......+ .-...|.++.++|....+.. ..... ...+ -++++||+|+...-....
T Consensus 47 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--~ivv~nK~D~~~~~~~~~ 124 (160)
T cd00876 47 YTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP--IVLVGNKCDLENERQVSK 124 (160)
T ss_pred EEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc--EEEEEECCcccccceecH
Confidence 45667788885321111 11356888999998764321 00011 2344 589999999986311223
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.+.+..+..+ .+++++|+++|.|++++++++.
T Consensus 125 ~~~~~~~~~~~--~~~~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 125 EEGKALAKEWG--CPFIETSAKDNINIDEVFKLLV 157 (160)
T ss_pred HHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHH
Confidence 45555555444 7899999999999999999875
No 178
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.59 E-value=0.00015 Score=54.39 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=57.4
Q ss_pred CEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc----------cccC---CCCcceeeEEEEecCCCCCchhhh
Q 032030 45 DLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI----------PRKG---GPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 45 D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~----------~~~~---~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
.+-+..|.|..-...+. -..+|.+++|.|......+ .... ....+ -++|.||+|+.+. ..
T Consensus 48 ~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p--iilvgNK~Dl~~~--~~ 123 (190)
T cd04144 48 MLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP--IMIVGNKCDKVYE--RE 123 (190)
T ss_pred EEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC--EEEEEEChhcccc--Cc
Confidence 35566777743211111 1356888999998765321 0001 12344 5789999999654 22
Q ss_pred H--HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 109 L--AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 109 l--~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+ +...+..+..+ .+++++||++|.|++++|++++
T Consensus 124 v~~~~~~~~~~~~~--~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 124 VSTEEGAALARRLG--CEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred cCHHHHHHHHHHhC--CEEEEecCCCCCCHHHHHHHHH
Confidence 2 23334444333 5899999999999999999876
No 179
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.58 E-value=0.00024 Score=66.34 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=60.1
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchh--------
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIG-------- 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~-------- 106 (148)
|-+.|+.|.|..-...+ .-..+|..+.|+|+..+...+. .....++ -++++||+|+.+...
T Consensus 526 p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iP--iIVViNKiDL~~~~~~~~~~~~~ 603 (1049)
T PRK14845 526 PGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTP--FVVAANKIDLIPGWNISEDEPFL 603 (1049)
T ss_pred CcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCC--EEEEEECCCCccccccccchhhh
Confidence 45899999995321111 1135799999999987533111 1112344 699999999974200
Q ss_pred --------hhHHHHHHH-------H-------------HhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 --------ADLAVMERD-------A-------------LRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 --------~~l~~~~~~-------i-------------~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..++.+... + +......+++++||+||+|+++|+.++.
T Consensus 604 ~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~ 669 (1049)
T PRK14845 604 LNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVA 669 (1049)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 011112111 1 1123467999999999999999998653
No 180
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.57 E-value=0.00031 Score=62.24 Aligned_cols=98 Identities=18% Similarity=0.135 Sum_probs=61.9
Q ss_pred CCCEEEEecCCceeee-ee--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 43 KADLLLCESGGDNLAA-NF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~-~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
.+.+-++.|.|..... .. .-..+|..++|+|+.++...+. .....++ -++|+||+|+.+. . .+.+.
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp--iIvViNKiDl~~a--~-~~~v~ 147 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE--IIPVLNKIDLPAA--D-PERVK 147 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC--EEEEEECCCCCcc--c-HHHHH
Confidence 3456788888864210 00 1135688999999988754211 1112344 5899999999754 2 22333
Q ss_pred HHHHhcC--CCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 114 RDALRMR--DGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 114 ~~i~~~n--p~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+.+++.. +..+++++||++|.|+++|++++..
T Consensus 148 ~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~ 181 (600)
T PRK05433 148 QEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVE 181 (600)
T ss_pred HHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHH
Confidence 3333322 2246899999999999999998753
No 181
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.55 E-value=0.00015 Score=55.12 Aligned_cols=97 Identities=18% Similarity=0.103 Sum_probs=58.5
Q ss_pred CCEEEEecCCceee-eeeccccCceEEEEEeCCCCCCcc---c-c------CCCCcceeeEEEEecCCCCCch-------
Q 032030 44 ADLLLCESGGDNLA-ANFSRELADYIIYIIDVSGGDKIP---R-K------GGPGITQADLLVINKTDLASAI------- 105 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~~~~~~d~~i~vvDa~~~~~~~---~-~------~~~qi~~ADivViNK~DL~~~~------- 105 (148)
+.+.+..|.|.-.. ....-..+|.++.+.|......+. . . ..+..+ -++|.||+||.+..
T Consensus 66 v~l~iwDTaG~~~~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~p--iilvgNK~DL~~~~~~~~~~~ 143 (195)
T cd01873 66 VSLRLWDTFGDHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP--VILVGCKLDLRYADLDEVNRA 143 (195)
T ss_pred EEEEEEeCCCChhhhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCC--EEEEEEchhccccccchhhhc
Confidence 44555666664211 011113578889999987653211 0 0 112333 58999999996410
Q ss_pred ------------hhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 106 ------------GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 106 ------------~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.-..+..++..++.+ ++.+.|||++|.|++++|+.++
T Consensus 144 ~~~~~~~~~~~~~V~~~e~~~~a~~~~--~~~~E~SAkt~~~V~e~F~~~~ 192 (195)
T cd01873 144 RRPLARPIKNADILPPETGRAVAKELG--IPYYETSVVTQFGVKDVFDNAI 192 (195)
T ss_pred ccccccccccCCccCHHHHHHHHHHhC--CEEEEcCCCCCCCHHHHHHHHH
Confidence 012234555555443 5899999999999999998875
No 182
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.00014 Score=55.92 Aligned_cols=49 Identities=24% Similarity=0.207 Sum_probs=38.7
Q ss_pred eEEEEecCCCCCchhhhHHHHH--HHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 92 DLLVINKTDLASAIGADLAVME--RDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~--~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
-++|.||.||++. .+....+ ...+++| +..+.|||++|+|+.++|..++
T Consensus 131 I~LVGnKtDL~dk--rqvs~eEg~~kAkel~--a~f~etsak~g~NVk~lFrrIa 181 (221)
T KOG0094|consen 131 IFLVGNKTDLSDK--RQVSIEEGERKAKELN--AEFIETSAKAGENVKQLFRRIA 181 (221)
T ss_pred EEEEcccccccch--hhhhHHHHHHHHHHhC--cEEEEecccCCCCHHHHHHHHH
Confidence 3789999999998 6654433 4445554 6889999999999999998865
No 183
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.54 E-value=0.00025 Score=52.33 Aligned_cols=77 Identities=18% Similarity=0.069 Sum_probs=49.4
Q ss_pred cCceEEEEEeCCCCCCc---c----c---c-CCCCcceeeEEEEecCCCCCchhhhHH----HHHHHHHhcCCCCcEEEE
Q 032030 64 LADYIIYIIDVSGGDKI---P----R---K-GGPGITQADLLVINKTDLASAIGADLA----VMERDALRMRDGGPFIFA 128 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~---~----~---~-~~~qi~~ADivViNK~DL~~~~~~~l~----~~~~~i~~~np~a~vi~t 128 (148)
.+|.++.|.|+...... . . . .+...+ -++|.||+|+.+. .+.+ ...+..++. ..+++.+
T Consensus 72 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~--iilVgnK~Dl~~~--~~~~~~~~~~~~~~~~~--~~~~~e~ 145 (170)
T cd04108 72 GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVL--LFLVGTKKDLSSP--AQYALMEQDAIKLAAEM--QAEYWSV 145 (170)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCe--EEEEEEChhcCcc--ccccccHHHHHHHHHHc--CCeEEEE
Confidence 57889999999764221 1 1 0 111122 4799999999765 3321 222333332 3688999
Q ss_pred EecCCCCHHHHHHhhhhh
Q 032030 129 QVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 129 Sa~~g~gi~~l~~~~~~~ 146 (148)
||++|.|++++|+.++-.
T Consensus 146 Sa~~g~~v~~lf~~l~~~ 163 (170)
T cd04108 146 SALSGENVREFFFRVAAL 163 (170)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999887643
No 184
>PLN03118 Rab family protein; Provisional
Probab=97.54 E-value=0.00014 Score=55.44 Aligned_cols=95 Identities=18% Similarity=0.109 Sum_probs=57.5
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc----------cCC--CCcceeeEEEEecCCCCCchhhh
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR----------KGG--PGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~----------~~~--~qi~~ADivViNK~DL~~~~~~~ 108 (148)
+.+.++.|.|.--...+ .-..+|.++.|+|....+.+.. .+. ...+ -++|.||+|+... ..
T Consensus 62 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~--~ilv~NK~Dl~~~--~~ 137 (211)
T PLN03118 62 LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV--KMLVGNKVDRESE--RD 137 (211)
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECcccccc--Cc
Confidence 34556666664211111 0124688899999876532110 011 1223 5899999999764 32
Q ss_pred H--HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 109 L--AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 109 l--~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+ +...+..+. ...+++++||++|.|++++|+++.
T Consensus 138 i~~~~~~~~~~~--~~~~~~e~SAk~~~~v~~l~~~l~ 173 (211)
T PLN03118 138 VSREEGMALAKE--HGCLFLECSAKTRENVEQCFEELA 173 (211)
T ss_pred cCHHHHHHHHHH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 2 333344443 346799999999999999999876
No 185
>PRK11058 GTPase HflX; Provisional
Probab=97.53 E-value=0.00036 Score=59.46 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=56.6
Q ss_pred CEEEEecCCce-e-e----eeec-----cccCceEEEEEeCCCCCCcc---------cc-CCCCcceeeEEEEecCCCCC
Q 032030 45 DLLLCESGGDN-L-A----ANFS-----RELADYIIYIIDVSGGDKIP---------RK-GGPGITQADLLVINKTDLAS 103 (148)
Q Consensus 45 D~IliEtsG~~-~-~----~~~~-----~~~~d~~i~vvDa~~~~~~~---------~~-~~~qi~~ADivViNK~DL~~ 103 (148)
.++++.|+|.- . + ..|. -..+|.++.|+|+.+..... .. .....+ -++|+||+|+.+
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p--vIiV~NKiDL~~ 323 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP--TLLVMNKIDMLD 323 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC--EEEEEEcccCCC
Confidence 56888999962 1 1 1121 13579999999998753211 00 111234 689999999976
Q ss_pred chhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 104 AIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 104 ~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
. .. ..+. ... .+ ...++++||++|.|+++|++++.
T Consensus 324 ~--~~-~~~~-~~~-~~-~~~~v~ISAktG~GIdeL~e~I~ 358 (426)
T PRK11058 324 D--FE-PRID-RDE-EN-KPIRVWLSAQTGAGIPLLFQALT 358 (426)
T ss_pred c--hh-HHHH-HHh-cC-CCceEEEeCCCCCCHHHHHHHHH
Confidence 4 22 1111 111 11 11258899999999999998875
No 186
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.53 E-value=0.00024 Score=51.81 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=58.2
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc----------cc-cCCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI----------PR-KGGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~----------~~-~~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+-++++.|......+. -..++..+.++|......+ .. ......| -+++.||.|+.+.-....
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p--iiiv~nK~D~~~~~~~~~ 126 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVP--MVLVGNKADLEDDRQVSR 126 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC--EEEEEEChhccccCccCH
Confidence 445677788753211111 1245777888887654321 00 0112344 478999999976411122
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+......+. ....+++++||++|.|++++|+++.
T Consensus 127 ~~~~~~~~~-~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 127 EDGVSLSQQ-WGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred HHHHHHHHH-cCCceEEEeeCCCCCCHHHHHHHHH
Confidence 233333333 2347899999999999999999886
No 187
>PTZ00369 Ras-like protein; Provisional
Probab=97.53 E-value=0.00013 Score=54.58 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=57.8
Q ss_pred EEEEecCCceeeeee---ccccCceEEEEEeCCCCCC---cc-------cc-CCCCcceeeEEEEecCCCCCchhhhHHH
Q 032030 46 LLLCESGGDNLAANF---SRELADYIIYIIDVSGGDK---IP-------RK-GGPGITQADLLVINKTDLASAIGADLAV 111 (148)
Q Consensus 46 ~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~---~~-------~~-~~~qi~~ADivViNK~DL~~~~~~~l~~ 111 (148)
+-+.+|.|......+ .-..+|.+++++|....+. .. .. ....++ -++|.||+|+.+...-..+.
T Consensus 55 l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~p--iiiv~nK~Dl~~~~~i~~~~ 132 (189)
T PTZ00369 55 LDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVP--MILVGNKCDLDSERQVSTGE 132 (189)
T ss_pred EEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECcccccccccCHHH
Confidence 335667775322111 1135688899999876532 11 10 112344 48899999986540012223
Q ss_pred HHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 112 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 112 ~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
..+..+.. ..+++.+||++|.|++++|++++..
T Consensus 133 ~~~~~~~~--~~~~~e~Sak~~~gi~~~~~~l~~~ 165 (189)
T PTZ00369 133 GQELAKSF--GIPFLETSAKQRVNVDEAFYELVRE 165 (189)
T ss_pred HHHHHHHh--CCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 33333433 3589999999999999999998643
No 188
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.53 E-value=0.00023 Score=51.90 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=58.4
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc---cc-------cCCCCcceeeEEEEecCCCCCchhhhH
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI---PR-------KGGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~---~~-------~~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
.+.+.+.+|.|.-....+. -..+|.++.+.|....+.+ .. ...+.++ -++|.||+|+.+. ...
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~ 123 (175)
T cd01870 48 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP--IILVGNKKDLRND--EHT 123 (175)
T ss_pred EEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC--EEEEeeChhcccC--hhh
Confidence 3567788888853211111 1346778877887643221 10 0112444 5899999998764 221
Q ss_pred --------------HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 --------------AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 --------------~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...++..+.. ...+++++||++|.|++++|++++-
T Consensus 124 ~~~i~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~lf~~l~~ 172 (175)
T cd01870 124 RRELAKMKQEPVKPEEGRDMANKI-GAFGYMECSAKTKEGVREVFEMATR 172 (175)
T ss_pred hhhhhhccCCCccHHHHHHHHHHc-CCcEEEEeccccCcCHHHHHHHHHH
Confidence 1222223322 2347899999999999999998863
No 189
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.52 E-value=0.00016 Score=60.08 Aligned_cols=77 Identities=23% Similarity=0.153 Sum_probs=49.7
Q ss_pred cCceEEEEEeCCCCCCc--ccc--CCCCcceeeEEEEecCCCCCchhh-hHHHHHHH----HHhcCC-CCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKI--PRK--GGPGITQADLLVINKTDLASAIGA-DLAVMERD----ALRMRD-GGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~--~~~--~~~qi~~ADivViNK~DL~~~~~~-~l~~~~~~----i~~~np-~a~vi~tSa~~g 133 (148)
.++.++.|+|+...+.. +.. .....+ -++|+||+||.+. . ..+++.++ .++.+- ...++.+||++|
T Consensus 63 ~~~~Il~VvD~~d~~~s~~~~l~~~~~~~p--iilV~NK~DLl~k--~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g 138 (360)
T TIGR03597 63 SNALIVYVVDIFDFEGSLIPELKRFVGGNP--VLLVGNKIDLLPK--SVNLSKIKEWMKKRAKELGLKPVDIILVSAKKG 138 (360)
T ss_pred CCcEEEEEEECcCCCCCccHHHHHHhCCCC--EEEEEEchhhCCC--CCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCC
Confidence 56788999998765431 111 111233 5899999999864 2 22334433 443331 236899999999
Q ss_pred CCHHHHHHhhh
Q 032030 134 IGIIFTLSITH 144 (148)
Q Consensus 134 ~gi~~l~~~~~ 144 (148)
.|++++++.+.
T Consensus 139 ~gv~eL~~~l~ 149 (360)
T TIGR03597 139 NGIDELLDKIK 149 (360)
T ss_pred CCHHHHHHHHH
Confidence 99999998874
No 190
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.52 E-value=0.00015 Score=52.49 Aligned_cols=77 Identities=18% Similarity=0.061 Sum_probs=49.4
Q ss_pred cCceEEEEEeCCCCCCcc---cc-------CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKIP---RK-------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~---~~-------~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
.++.++++.|+.+..... .. .+..++ -++|.||+|+.+.-....+......+. ...+++++||++|
T Consensus 75 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--i~vv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~ 150 (165)
T cd01868 75 GAVGALLVYDITKKQTFENVERWLKELRDHADSNIV--IMLVGNKSDLRHLRAVPTEEAKAFAEK--NGLSFIETSALDG 150 (165)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe--EEEEEECccccccccCCHHHHHHHHHH--cCCEEEEEECCCC
Confidence 467789999987542211 00 111233 578999999975410122344444443 3468999999999
Q ss_pred CCHHHHHHhhh
Q 032030 134 IGIIFTLSITH 144 (148)
Q Consensus 134 ~gi~~l~~~~~ 144 (148)
.|++++++++.
T Consensus 151 ~~v~~l~~~l~ 161 (165)
T cd01868 151 TNVEEAFKQLL 161 (165)
T ss_pred CCHHHHHHHHH
Confidence 99999999875
No 191
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.52 E-value=0.00028 Score=60.59 Aligned_cols=94 Identities=17% Similarity=0.107 Sum_probs=57.3
Q ss_pred CCEEEEecCCceee-----eee------ccccCceEEEEEeCCCCCCcc-----c-cCCCCcceeeEEEEecCCCCCchh
Q 032030 44 ADLLLCESGGDNLA-----ANF------SRELADYIIYIIDVSGGDKIP-----R-KGGPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~-----~~~------~~~~~d~~i~vvDa~~~~~~~-----~-~~~~qi~~ADivViNK~DL~~~~~ 106 (148)
..+.++.|.|.-.. ..+ .-..+|.+++|+|+..+.... . ......+ -++|+||+|+...
T Consensus 86 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~p--iilV~NK~Dl~~~-- 161 (472)
T PRK03003 86 RRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKP--VILAANKVDDERG-- 161 (472)
T ss_pred cEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC--EEEEEECccCCcc--
Confidence 34667888885310 001 113579999999998763311 1 1112344 7999999999754
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.. ...+... .. ....+++||++|.|++++++++.-
T Consensus 162 ~~--~~~~~~~-~g-~~~~~~iSA~~g~gi~eL~~~i~~ 196 (472)
T PRK03003 162 EA--DAAALWS-LG-LGEPHPVSALHGRGVGDLLDAVLA 196 (472)
T ss_pred ch--hhHHHHh-cC-CCCeEEEEcCCCCCcHHHHHHHHh
Confidence 21 1222222 22 223479999999999999998753
No 192
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.51 E-value=0.00016 Score=53.61 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=59.1
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc---c-------cCCCCcceeeEEEEecCCCCCchhhhH-
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP---R-------KGGPGITQADLLVINKTDLASAIGADL- 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~---~-------~~~~qi~~ADivViNK~DL~~~~~~~l- 109 (148)
+.+-+.+++|.-....+. -..+|.++++.|......+. . ...+.+| -++|.||+|+.+. .++
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~p--iilvgnK~Dl~~~--~~~~ 124 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP--FLLVGTQIDLRDD--PSTI 124 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEECHhhhhC--hhhH
Confidence 556677777754221111 13568889999987653211 0 1122345 5899999999754 321
Q ss_pred -------------HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 -------------AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 -------------~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+...+..++ .+..+++++||++|.|++++|+.++
T Consensus 125 ~~l~~~~~~~v~~~~~~~~a~~-~~~~~~~e~SA~tg~~v~~~f~~~~ 171 (175)
T cd01874 125 EKLAKNKQKPITPETGEKLARD-LKAVKYVECSALTQKGLKNVFDEAI 171 (175)
T ss_pred HHhhhccCCCcCHHHHHHHHHH-hCCcEEEEecCCCCCCHHHHHHHHH
Confidence 112222322 3346899999999999999998875
No 193
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.50 E-value=0.00019 Score=65.24 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=62.6
Q ss_pred CCCEEEEecCCceee----e--eec---------cccCceEEEEEeCCCCCCcc----ccCCCCcceeeEEEEecCCCCC
Q 032030 43 KADLLLCESGGDNLA----A--NFS---------RELADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLAS 103 (148)
Q Consensus 43 ~~D~IliEtsG~~~~----~--~~~---------~~~~d~~i~vvDa~~~~~~~----~~~~~qi~~ADivViNK~DL~~ 103 (148)
+.++.++.+.|.-.. . +.. ....|.++.|+|+.+.+... ......++ -++++||+|+..
T Consensus 49 ~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giP--vIvVlNK~Dl~~ 126 (772)
T PRK09554 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIP--CIVALNMLDIAE 126 (772)
T ss_pred ceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCC--EEEEEEchhhhh
Confidence 457888999996321 0 100 12468999999998765421 11122355 799999999975
Q ss_pred chhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 104 AIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 104 ~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
. .....-.+.+++.. +.|++++||++|.|++++.+.+.
T Consensus 127 ~--~~i~id~~~L~~~L-G~pVvpiSA~~g~GIdeL~~~I~ 164 (772)
T PRK09554 127 K--QNIRIDIDALSARL-GCPVIPLVSTRGRGIEALKLAID 164 (772)
T ss_pred c--cCcHHHHHHHHHHh-CCCEEEEEeecCCCHHHHHHHHH
Confidence 4 33322223333322 36899999999999999998764
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.50 E-value=0.00032 Score=59.81 Aligned_cols=95 Identities=21% Similarity=0.181 Sum_probs=65.9
Q ss_pred cCCCEEEEecCCceee--eee----------ccccCceEEEEEeCCCCCC-----ccc-cCCCCcceeeEEEEecCCCCC
Q 032030 42 FKADLLLCESGGDNLA--ANF----------SRELADYIIYIIDVSGGDK-----IPR-KGGPGITQADLLVINKTDLAS 103 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~--~~~----------~~~~~d~~i~vvDa~~~~~-----~~~-~~~~qi~~ADivViNK~DL~~ 103 (148)
.+..+.+|.|-|+-.. ..+ .-..+|.+++|||+..|.. +.. ..+...+ -++|+||+|-..
T Consensus 49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kp--viLvvNK~D~~~ 126 (444)
T COG1160 49 LGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKP--VILVVNKIDNLK 126 (444)
T ss_pred cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC--EEEEEEcccCch
Confidence 3677999999998521 111 1135899999999998743 111 1222355 799999999764
Q ss_pred chhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 104 AIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 104 ~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
. + +..-+++. .-..+++++||..|.|+.+|++.+.
T Consensus 127 ~--e--~~~~efys--lG~g~~~~ISA~Hg~Gi~dLld~v~ 161 (444)
T COG1160 127 A--E--ELAYEFYS--LGFGEPVPISAEHGRGIGDLLDAVL 161 (444)
T ss_pred h--h--hhHHHHHh--cCCCCceEeehhhccCHHHHHHHHH
Confidence 4 3 24555555 3456779999999999999998864
No 195
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.49 E-value=0.00022 Score=52.86 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=59.3
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchhhhH-
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIGADL- 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~~~l- 109 (148)
..+.+.+|.|......+. -..+|.+|+|.|....+.+.. ...+.++ -++|.||+||.+.- ...
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~p--iilvgnK~Dl~~~~-~~~~ 125 (174)
T cd01871 49 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP--IILVGTKLDLRDDK-DTIE 125 (174)
T ss_pred EEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEeeChhhccCh-hhHH
Confidence 455677777753211111 135788999999876532110 1112344 68899999996430 111
Q ss_pred ------------HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 ------------AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ------------~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+...+..++.+ ..+++++||++|.|++++|+.++-
T Consensus 126 ~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 126 KLKEKKLTPITYPQGLAMAKEIG-AVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHhhccCCCCCHHHHHHHHHHcC-CcEEEEecccccCCHHHHHHHHHH
Confidence 22233344333 358899999999999999998763
No 196
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00041 Score=60.01 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=61.7
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcccc------CCCCcceeeEEEEecCCCCCchhhhHHHHHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPRK------GGPGITQADLLVINKTDLASAIGADLAVMER 114 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~~------~~~qi~~ADivViNK~DL~~~~~~~l~~~~~ 114 (148)
+-+.||.|.|=.-...+ .....|..+.||++.+|-.-|.. .....| =+|.+||+|..+. .-.++..
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP--~iVAiNKiDk~~~---np~~v~~ 129 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP--IVVAINKIDKPEA---NPDKVKQ 129 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCC--EEEEEecccCCCC---CHHHHHH
Confidence 44566666663211111 12467889999999888543221 122455 5899999999853 3444444
Q ss_pred HHH-------hcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 115 DAL-------RMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 115 ~i~-------~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+. ++.....++++||++|+|+++|++.+.
T Consensus 130 el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 130 ELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred HHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 333 233457899999999999999998764
No 197
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.46 E-value=0.00035 Score=51.11 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=59.9
Q ss_pred CCEEEEecCCceee-eeec---cccCceEEEEEeCCCCCCcc---c--------cCCCCcceeeEEEEecCCCCCchhhh
Q 032030 44 ADLLLCESGGDNLA-ANFS---RELADYIIYIIDVSGGDKIP---R--------KGGPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~~---~~~~d~~i~vvDa~~~~~~~---~--------~~~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
+.+-+.++.|.--. ..+. -..+|.+++++|+....... . .....+| -++|.||+|+... .+
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--~iiv~nK~Dl~~~--~~ 126 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP--RILVGNKCDLREQ--IQ 126 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC--EEEEEECccchhh--cC
Confidence 55667777774211 1111 13468889999997653211 0 0123455 6999999999754 32
Q ss_pred H--HHHHHHHHhcCCCCcEEEEEecC---CCCHHHHHHhhhh
Q 032030 109 L--AVMERDALRMRDGGPFIFAQVGW---VIGIIFTLSITHY 145 (148)
Q Consensus 109 l--~~~~~~i~~~np~a~vi~tSa~~---g~gi~~l~~~~~~ 145 (148)
+ +...+..+.. ..+++.+||++ +.+++++|..++.
T Consensus 127 ~~~~~~~~~~~~~--~~~~~e~Sa~~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 127 VPTDLAQRFADAH--SMPLFETSAKDPSENDHVEAIFMTLAH 166 (170)
T ss_pred CCHHHHHHHHHHc--CCcEEEEeccCCcCCCCHHHHHHHHHH
Confidence 1 2333333332 37899999999 8999999988764
No 198
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.46 E-value=0.00035 Score=52.09 Aligned_cols=77 Identities=12% Similarity=-0.077 Sum_probs=49.7
Q ss_pred cCceEEEEEeCCCCCCcc------c---cCCCCcceeeEEEEecCCCCCchh--h--hHHHHHHHHHhcCCCCcEEEEEe
Q 032030 64 LADYIIYIIDVSGGDKIP------R---KGGPGITQADLLVINKTDLASAIG--A--DLAVMERDALRMRDGGPFIFAQV 130 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~------~---~~~~qi~~ADivViNK~DL~~~~~--~--~l~~~~~~i~~~np~a~vi~tSa 130 (148)
.+|.+++|+|......+. . ...+..+ -++|.||+|+.+... . ..+.+.+..+. ...+++++||
T Consensus 73 ~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p--iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~Sa 148 (193)
T cd04118 73 GAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK--IYLCGTKSDLIEQDRSLRQVDFHDVQDFADE--IKAQHFETSS 148 (193)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC--EEEEEEcccccccccccCccCHHHHHHHHHH--cCCeEEEEeC
Confidence 578889999987653211 1 0112234 689999999975410 0 11233333333 2468999999
Q ss_pred cCCCCHHHHHHhhh
Q 032030 131 GWVIGIIFTLSITH 144 (148)
Q Consensus 131 ~~g~gi~~l~~~~~ 144 (148)
++|.|+++++++++
T Consensus 149 ~~~~gv~~l~~~i~ 162 (193)
T cd04118 149 KTGQNVDELFQKVA 162 (193)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999999876
No 199
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.46 E-value=0.0002 Score=58.70 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=64.8
Q ss_pred hcCCCEEEEecCCceee---------eee------ccccCceEEEEEeCCCCCC--cccc-----CCCCcceeeEEEEec
Q 032030 41 LFKADLLLCESGGDNLA---------ANF------SRELADYIIYIIDVSGGDK--IPRK-----GGPGITQADLLVINK 98 (148)
Q Consensus 41 ~~~~D~IliEtsG~~~~---------~~~------~~~~~d~~i~vvDa~~~~~--~~~~-----~~~qi~~ADivViNK 98 (148)
...--+||..|.|+... ..+ ....+|.+++++|+...-. -+.. .-.+++ .++|+||
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ip--s~lvmnk 194 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIP--SILVMNK 194 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCC--ceeeccc
Confidence 34678999999998421 011 1135799999999985211 1211 113566 7999999
Q ss_pred CCCCCchh-----------hhHHHHHHHHHhcCCCCc----------------EEEEEecCCCCHHHHHHhhh
Q 032030 99 TDLASAIG-----------ADLAVMERDALRMRDGGP----------------FIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 99 ~DL~~~~~-----------~~l~~~~~~i~~~np~a~----------------vi~tSa~~g~gi~~l~~~~~ 144 (148)
+|...+.. .++....-.+++....+| ||.+||++|.|++++-+++.
T Consensus 195 id~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLm 267 (379)
T KOG1423|consen 195 IDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLM 267 (379)
T ss_pred hhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHH
Confidence 99755411 233333334444444444 99999999999999998864
No 200
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0005 Score=58.42 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=62.5
Q ss_pred CEEEEecCCceee-eeec--cccCceEEEEEeCCCCCCcccc------CCCCcceeeEEEEecCCCCCchhhhHHHHHHH
Q 032030 45 DLLLCESGGDNLA-ANFS--RELADYIIYIIDVSGGDKIPRK------GGPGITQADLLVINKTDLASAIGADLAVMERD 115 (148)
Q Consensus 45 D~IliEtsG~~~~-~~~~--~~~~d~~i~vvDa~~~~~~~~~------~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~ 115 (148)
=.-||++.|=.-- .++. -...|+.+++|++.+|.+.+.. .--+++. -++|+||+|++++ ++++...+.
T Consensus 51 ~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~-giivltk~D~~d~--~r~e~~i~~ 127 (447)
T COG3276 51 VMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKN-GIIVLTKADRVDE--ARIEQKIKQ 127 (447)
T ss_pred ceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCc-eEEEEeccccccH--HHHHHHHHH
Confidence 3456777773210 0110 1256788999999877553210 0012220 2899999999998 777655544
Q ss_pred HHh-c-CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 116 ALR-M-RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 116 i~~-~-np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.+ . .+.++++++|+++|.|+++|-+.+.
T Consensus 128 Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~ 158 (447)
T COG3276 128 ILADLSLANAKIFKTSAKTGRGIEELKNELI 158 (447)
T ss_pred HHhhcccccccccccccccCCCHHHHHHHHH
Confidence 432 1 4788999999999999999987764
No 201
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00017 Score=59.49 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=54.4
Q ss_pred cCceEEEEEeCCCCCCccccCC-----C--CcceeeEEEEecCCCCCchh--hhHHHHHHHHHh-cCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKIPRKGG-----P--GITQADLLVINKTDLASAIG--ADLAVMERDALR-MRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~~~~-----~--qi~~ADivViNK~DL~~~~~--~~l~~~~~~i~~-~np~a~vi~tSa~~g 133 (148)
+-|..+.|+.|.+.-..|+-.. . .++ --++|-||+||++... +..+++.++++. +-.++||+++||..+
T Consensus 109 lMDgAlLvIaANEpcPQPQT~EHl~AleIigik-~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~ 187 (415)
T COG5257 109 LMDGALLVIAANEPCPQPQTREHLMALEIIGIK-NIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHK 187 (415)
T ss_pred hhcceEEEEecCCCCCCCchHHHHHHHhhhccc-eEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhc
Confidence 3466688888877643332111 0 122 1377889999999721 233567777873 446789999999999
Q ss_pred CCHHHHHHhhh
Q 032030 134 IGIIFTLSITH 144 (148)
Q Consensus 134 ~gi~~l~~~~~ 144 (148)
.|++.|++++.
T Consensus 188 ~NIDal~e~i~ 198 (415)
T COG5257 188 ANIDALIEAIE 198 (415)
T ss_pred cCHHHHHHHHH
Confidence 99999998764
No 202
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.45 E-value=0.00052 Score=60.71 Aligned_cols=98 Identities=19% Similarity=0.103 Sum_probs=59.6
Q ss_pred CEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchh---------
Q 032030 45 DLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIG--------- 106 (148)
Q Consensus 45 D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~--------- 106 (148)
.+.|+.|.|---...+ .-..+|..++|+|+.++...+. .....++ -++++||+|+.+...
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vp--iIVv~NK~Dl~~~~~~~~~~~f~e 147 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTP--FVVAANKIDRIPGWRSHEGRPFME 147 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCC--EEEEEECCCccchhhhccCchHHH
Confidence 3778889885211111 1146789999999987633111 1112344 589999999974200
Q ss_pred ---hhHHHH-----------HHHHH-------------hcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 ---ADLAVM-----------ERDAL-------------RMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 ---~~l~~~-----------~~~i~-------------~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+-+.+ ...+. +.....+++++||+||+|+++|++++.
T Consensus 148 ~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~ 212 (590)
T TIGR00491 148 SFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLA 212 (590)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHH
Confidence 000011 11111 234568999999999999999998764
No 203
>PRK13796 GTPase YqeH; Provisional
Probab=97.45 E-value=0.00031 Score=58.62 Aligned_cols=75 Identities=16% Similarity=0.042 Sum_probs=47.9
Q ss_pred ceEEEEEeCCCCCCc--ccc--CCCCcceeeEEEEecCCCCCchhh-hHHHHHHHH----HhcC-CCCcEEEEEecCCCC
Q 032030 66 DYIIYIIDVSGGDKI--PRK--GGPGITQADLLVINKTDLASAIGA-DLAVMERDA----LRMR-DGGPFIFAQVGWVIG 135 (148)
Q Consensus 66 d~~i~vvDa~~~~~~--~~~--~~~qi~~ADivViNK~DL~~~~~~-~l~~~~~~i----~~~n-p~a~vi~tSa~~g~g 135 (148)
..++.|+|+.+.... +.. +....+ -++|+||+||.+. . ..+++.+++ +..+ +..+++.+||++|.|
T Consensus 71 ~lIv~VVD~~D~~~s~~~~L~~~~~~kp--viLViNK~DLl~~--~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~g 146 (365)
T PRK13796 71 ALVVNVVDIFDFNGSWIPGLHRFVGNNP--VLLVGNKADLLPK--SVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHG 146 (365)
T ss_pred cEEEEEEECccCCCchhHHHHHHhCCCC--EEEEEEchhhCCC--ccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCC
Confidence 377999998765431 111 112233 5899999999864 2 223343332 3222 224789999999999
Q ss_pred HHHHHHhhh
Q 032030 136 IIFTLSITH 144 (148)
Q Consensus 136 i~~l~~~~~ 144 (148)
++++++.+.
T Consensus 147 I~eL~~~I~ 155 (365)
T PRK13796 147 IDELLEAIE 155 (365)
T ss_pred HHHHHHHHH
Confidence 999998873
No 204
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.40 E-value=0.00039 Score=58.82 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCCEEEEecCCceee--eee-ccccCceEEEEEeCCCCC---Ccccc----CCCCcce-eeEEEEecCCCCCchhhhH--
Q 032030 43 KADLLLCESGGDNLA--ANF-SRELADYIIYIIDVSGGD---KIPRK----GGPGITQ-ADLLVINKTDLASAIGADL-- 109 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--~~~-~~~~~d~~i~vvDa~~~~---~~~~~----~~~qi~~-ADivViNK~DL~~~~~~~l-- 109 (148)
+..+.++.|.|---. ..+ .-..+|..++|+|+..++ ..+.. ....+.. --++++||+|+.+...+.+
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 466788888884210 000 113578999999998772 11110 0001111 1467899999985311333
Q ss_pred --HHHHHHHHhcC---CCCcEEEEEecCCCCHHH
Q 032030 110 --AVMERDALRMR---DGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 110 --~~~~~~i~~~n---p~a~vi~tSa~~g~gi~~ 138 (148)
+++.+.++... ...+++++||++|.|+++
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 33444555433 246899999999999986
No 205
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.38 E-value=0.00045 Score=52.96 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=57.1
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc---c-------cC-CCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP---R-------KG-GPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~---~-------~~-~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+.+.+++|.-..... .-..+|.++++.|......+. . .. +...+ -++|.||+|+.+.-....
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~--iilvgNK~Dl~~~~~v~~ 129 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPV--FILVGHKCDLESQRQVTR 129 (211)
T ss_pred EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCe--EEEEEEccccccccccCH
Confidence 44566677774211000 013468889999987653210 0 00 11122 367889999976400112
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+...+..+..+ .+++.+||++|.|++++|++++
T Consensus 130 ~~~~~~~~~~~--~~~~e~Sak~g~~v~e~f~~l~ 162 (211)
T cd04111 130 EEAEKLAKDLG--MKYIETSARTGDNVEEAFELLT 162 (211)
T ss_pred HHHHHHHHHhC--CEEEEEeCCCCCCHHHHHHHHH
Confidence 33444444333 7899999999999999999876
No 206
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.37 E-value=0.00032 Score=51.32 Aligned_cols=78 Identities=8% Similarity=0.047 Sum_probs=49.0
Q ss_pred cCceEEEEEeCCCCCCccc---------cC--CCCcceeeEEEEecCCCCCchhhhH--HHHHHHHHhcCCCCcEEEEEe
Q 032030 64 LADYIIYIIDVSGGDKIPR---------KG--GPGITQADLLVINKTDLASAIGADL--AVMERDALRMRDGGPFIFAQV 130 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~---------~~--~~qi~~ADivViNK~DL~~~~~~~l--~~~~~~i~~~np~a~vi~tSa 130 (148)
.+|.++.|.|......+.. .. .+.++ -++|.||.||...-..++ +..++..++ ....++++|||
T Consensus 65 ~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~p--iilvgnK~Dl~~~~~~~v~~~~~~~~~~~-~~~~~~~e~SA 141 (158)
T cd04103 65 WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIP--LILVGTQDAISESNPRVIDDARARQLCAD-MKRCSYYETCA 141 (158)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEeeHHHhhhcCCcccCHHHHHHHHHH-hCCCcEEEEec
Confidence 4678899999876532211 01 13345 479999999843100212 122333332 23468999999
Q ss_pred cCCCCHHHHHHhhh
Q 032030 131 GWVIGIIFTLSITH 144 (148)
Q Consensus 131 ~~g~gi~~l~~~~~ 144 (148)
++|.|++++|..++
T Consensus 142 k~~~~i~~~f~~~~ 155 (158)
T cd04103 142 TYGLNVERVFQEAA 155 (158)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999999876
No 207
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.37 E-value=0.00031 Score=59.24 Aligned_cols=95 Identities=18% Similarity=0.201 Sum_probs=56.8
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCcccc------CCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPRK------GGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~~------~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
+..+.|+.|.|.... ... .-..+|..+.|+|+..+..-+.. ...+++ --++++||+|+.+.-.+.++.+.
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~-~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIR-HVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCC-cEEEEEEecccccchHHHHHHHH
Confidence 446788888884310 000 12367899999999877432210 011222 13679999999864113333344
Q ss_pred HHH----HhcC-CCCcEEEEEecCCCCHHH
Q 032030 114 RDA----LRMR-DGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 114 ~~i----~~~n-p~a~vi~tSa~~g~gi~~ 138 (148)
+.+ +... ...+++++||++|.|+++
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 433 3322 346899999999999875
No 208
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.36 E-value=0.00029 Score=52.75 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=58.4
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchh----
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIG---- 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~---- 106 (148)
+.+-+..|.|.--...+. -..+|.++.+.|......+.. ...+.++ -++|.||+||.+.-.
T Consensus 49 v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~p--iilvgnK~Dl~~~~~~~~~ 126 (176)
T cd04133 49 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVP--IVLVGTKLDLRDDKQYLAD 126 (176)
T ss_pred EEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEeChhhccChhhhhh
Confidence 445566666643211111 125688899999875432210 1122344 589999999965300
Q ss_pred ------hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 107 ------ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 107 ------~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
-..++..+..++.+ ..+.+.|||++|.|++++|+.++=
T Consensus 127 ~~~~~~v~~~~~~~~a~~~~-~~~~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 127 HPGASPITTAQGEELRKQIG-AAAYIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred ccCCCCCCHHHHHHHHHHcC-CCEEEECCCCcccCHHHHHHHHHH
Confidence 11233444444332 236899999999999999998763
No 209
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.35 E-value=0.0034 Score=51.04 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=65.9
Q ss_pred HHHHhhhh--cCCCEEEEecCCceeeeeecc-----------ccCceEEEEEeCCCCCC---c--------cccCCCCcc
Q 032030 34 PLEELSNL--FKADLLLCESGGDNLAANFSR-----------ELADYIIYIIDVSGGDK---I--------PRKGGPGIT 89 (148)
Q Consensus 34 al~~l~~~--~~~D~IliEtsG~~~~~~~~~-----------~~~d~~i~vvDa~~~~~---~--------~~~~~~qi~ 89 (148)
.+.++.++ ..+||++|.|.|-.-+.+.+. ..--.++.+||..+... + ...++..+|
T Consensus 104 qv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp 183 (366)
T KOG1532|consen 104 QVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLP 183 (366)
T ss_pred HHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCC
Confidence 34444443 369999999999532211111 11123588999765421 0 112345667
Q ss_pred eeeEEEEecCCCCCchh-----hhHHHHHHHHH-------------------hcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 90 QADLLVINKTDLASAIG-----ADLAVMERDAL-------------------RMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 90 ~ADivViNK~DL~~~~~-----~~l~~~~~~i~-------------------~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
=++|.||+|+.+... .+.++.++.+. +...+.+.+-+|+.||.|.+++|..+
T Consensus 184 --~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av 259 (366)
T KOG1532|consen 184 --FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAV 259 (366)
T ss_pred --eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHH
Confidence 699999999987511 11223333332 34456788999999999999999765
No 210
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.35 E-value=0.00026 Score=54.68 Aligned_cols=75 Identities=11% Similarity=-0.041 Sum_probs=49.2
Q ss_pred cCceEEEEEeCCCCCCcc---c------cCCCCcceeeEEEEecCCCCCchhhhH-HHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKIP---R------KGGPGITQADLLVINKTDLASAIGADL-AVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~---~------~~~~qi~~ADivViNK~DL~~~~~~~l-~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
.+|.+|+|+|......+. . ...+.++ -++|.||+|+... ... +.+ +..+. .+.+.+.+||++|
T Consensus 85 ~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~p--iilvgNK~Dl~~~--~v~~~~~-~~~~~--~~~~~~e~SAk~~ 157 (219)
T PLN03071 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP--IVLCGNKVDVKNR--QVKAKQV-TFHRK--KNLQYYEISAKSN 157 (219)
T ss_pred cccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCc--EEEEEEchhhhhc--cCCHHHH-HHHHh--cCCEEEEcCCCCC
Confidence 457789999987653211 0 1122344 6999999999653 211 122 33332 3467899999999
Q ss_pred CCHHHHHHhhhh
Q 032030 134 IGIIFTLSITHY 145 (148)
Q Consensus 134 ~gi~~l~~~~~~ 145 (148)
.|++++|++++-
T Consensus 158 ~~i~~~f~~l~~ 169 (219)
T PLN03071 158 YNFEKPFLYLAR 169 (219)
T ss_pred CCHHHHHHHHHH
Confidence 999999998863
No 211
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.33 E-value=0.0007 Score=60.99 Aligned_cols=93 Identities=19% Similarity=0.113 Sum_probs=58.5
Q ss_pred CCEEEEecCCceee-----eee------ccccCceEEEEEeCCCCCCc-----cc-cCCCCcceeeEEEEecCCCCCchh
Q 032030 44 ADLLLCESGGDNLA-----ANF------SRELADYIIYIIDVSGGDKI-----PR-KGGPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~-----~~~------~~~~~d~~i~vvDa~~~~~~-----~~-~~~~qi~~ADivViNK~DL~~~~~ 106 (148)
..+.++.|.|.... ..+ .-..+|.+++|+|+..+... .. ......+ -++|+||+|+...
T Consensus 323 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~p--vIlV~NK~D~~~~-- 398 (712)
T PRK09518 323 TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKP--VVLAVNKIDDQAS-- 398 (712)
T ss_pred EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC--EEEEEECcccccc--
Confidence 45678888885321 001 11357999999999875321 11 1123445 6999999998754
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.. ...+.++. ....++++||++|.|++++++++.
T Consensus 399 ~~--~~~~~~~l--g~~~~~~iSA~~g~GI~eLl~~i~ 432 (712)
T PRK09518 399 EY--DAAEFWKL--GLGEPYPISAMHGRGVGDLLDEAL 432 (712)
T ss_pred hh--hHHHHHHc--CCCCeEEEECCCCCCchHHHHHHH
Confidence 32 22233331 223458999999999999998875
No 212
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.33 E-value=0.00036 Score=50.59 Aligned_cols=97 Identities=18% Similarity=0.116 Sum_probs=59.4
Q ss_pred CEEEEecCCceee--eee--ccccCceEEEEEeCCCCCCcc----------ccC--CCCcceeeEEEEecCCCCCchhhh
Q 032030 45 DLLLCESGGDNLA--ANF--SRELADYIIYIIDVSGGDKIP----------RKG--GPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 45 D~IliEtsG~~~~--~~~--~~~~~d~~i~vvDa~~~~~~~----------~~~--~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
.+-++++.|.... ... .-..+|.+++++|+.+...+. ... ...+| -++|.||+|+...-.-.
T Consensus 48 ~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~~~v~ 125 (165)
T cd04146 48 SLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP--VILVGNKADLLHYRQVS 125 (165)
T ss_pred EEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECCchHHhCccC
Confidence 4557788885421 100 112578899999997763211 111 22455 58999999986430012
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCC-CCHHHHHHhhhh
Q 032030 109 LAVMERDALRMRDGGPFIFAQVGWV-IGIIFTLSITHY 145 (148)
Q Consensus 109 l~~~~~~i~~~np~a~vi~tSa~~g-~gi~~l~~~~~~ 145 (148)
.+...+..+..+ .+++++||++| .|++++|+.++-
T Consensus 126 ~~~~~~~~~~~~--~~~~e~Sa~~~~~~v~~~f~~l~~ 161 (165)
T cd04146 126 TEEGEKLASELG--CLFFEVSAAEDYDGVHSVFHELCR 161 (165)
T ss_pred HHHHHHHHHHcC--CEEEEeCCCCCchhHHHHHHHHHH
Confidence 223344444433 68999999999 599999998863
No 213
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.29 E-value=0.00041 Score=59.75 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=58.7
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCcccc------CCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPRK------GGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~~------~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
+..++||.|.|---. ... .-..+|..++|+|+..+..-+.. ....++ --++++||+|+.+.-...++.+.
T Consensus 106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~-~iIvvvNKiD~~~~~~~~~~~i~ 184 (474)
T PRK05124 106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIK-HLVVAVNKMDLVDYSEEVFERIR 184 (474)
T ss_pred CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCC-ceEEEEEeeccccchhHHHHHHH
Confidence 456889999994210 000 12467999999999877432110 001122 13679999999853113344555
Q ss_pred HHHHh----c--CCCCcEEEEEecCCCCHHHH
Q 032030 114 RDALR----M--RDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 114 ~~i~~----~--np~a~vi~tSa~~g~gi~~l 139 (148)
+.++. . .+..+++++||++|.|++++
T Consensus 185 ~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 185 EDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 44432 2 35689999999999998763
No 214
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.28 E-value=0.00049 Score=51.74 Aligned_cols=76 Identities=17% Similarity=0.114 Sum_probs=49.1
Q ss_pred cCceEEEEEeCCCCCCc---c-cc------CCCCcceeeEEEEecCCCCCchhhh-H-------------HHHHHHHHhc
Q 032030 64 LADYIIYIIDVSGGDKI---P-RK------GGPGITQADLLVINKTDLASAIGAD-L-------------AVMERDALRM 119 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~---~-~~------~~~qi~~ADivViNK~DL~~~~~~~-l-------------~~~~~~i~~~ 119 (148)
.+|.++++.|......+ . .. ..+.++ -++|.||.||.+. .. . ++..+..++.
T Consensus 74 ~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~p--iilvgNK~DL~~~--~~~~~~~~~~~~~~v~~~~~~~~a~~~ 149 (191)
T cd01875 74 QTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVP--ILLVGTKKDLRND--ADTLKKLKEQGQAPITPQQGGALAKQI 149 (191)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC--EEEEEeChhhhcC--hhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 57888999998765321 1 01 113455 5899999999654 21 1 1222233322
Q ss_pred CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 120 RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 120 np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+ ..+++.+||++|.|++++|++++
T Consensus 150 ~-~~~~~e~SAk~g~~v~e~f~~l~ 173 (191)
T cd01875 150 H-AVKYLECSALNQDGVKEVFAEAV 173 (191)
T ss_pred C-CcEEEEeCCCCCCCHHHHHHHHH
Confidence 2 24789999999999999999876
No 215
>PRK12736 elongation factor Tu; Reviewed
Probab=97.27 E-value=0.0015 Score=54.94 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=58.1
Q ss_pred CCCEEEEecCCcee--eeee-ccccCceEEEEEeCCCCCCccc------cCCCCcceee-EEEEecCCCCCchhhhH-H-
Q 032030 43 KADLLLCESGGDNL--AANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQAD-LLVINKTDLASAIGADL-A- 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~--~~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~AD-ivViNK~DL~~~~~~~l-~- 110 (148)
+..+.++.|.|--- .... .-..+|..++|+|+..+..-+. .....++ - ++++||+|+++. +++ +
T Consensus 74 ~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~--~~IvviNK~D~~~~--~~~~~~ 149 (394)
T PRK12736 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVP--YLVVFLNKVDLVDD--EELLEL 149 (394)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCC--EEEEEEEecCCcch--HHHHHH
Confidence 45678899999421 1001 1135799999999987633111 0011122 3 578999999854 332 2
Q ss_pred ---HHHHHHHhcC---CCCcEEEEEecCCC--------CHHHHHHhh
Q 032030 111 ---VMERDALRMR---DGGPFIFAQVGWVI--------GIIFTLSIT 143 (148)
Q Consensus 111 ---~~~~~i~~~n---p~a~vi~tSa~~g~--------gi~~l~~~~ 143 (148)
++.+.++... ...|++++||++|. ++++|++.+
T Consensus 150 i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l 196 (394)
T PRK12736 150 VEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAV 196 (394)
T ss_pred HHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHH
Confidence 3444444443 24799999999983 567777665
No 216
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.27 E-value=0.00051 Score=53.74 Aligned_cols=44 Identities=20% Similarity=0.049 Sum_probs=34.3
Q ss_pred eEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 92 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
-++|.||+|+.+. .+.+. ..+ . .+++++||++|.|++++++.+.
T Consensus 179 ~iiV~NK~Dl~~~--~~~~~---~~~--~--~~~~~~SA~~g~gi~~l~~~i~ 222 (233)
T cd01896 179 CLYVYNKIDLISI--EELDL---LAR--Q--PNSVVISAEKGLNLDELKERIW 222 (233)
T ss_pred EEEEEECccCCCH--HHHHH---Hhc--C--CCEEEEcCCCCCCHHHHHHHHH
Confidence 5799999999887 65552 221 2 3589999999999999998765
No 217
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.00056 Score=50.55 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=51.3
Q ss_pred cCceEEEEEeCCCCCCccc--------cCCCCcceee-EEEEecCCCCCchhhhHHHHHHHH--Hhc-CCCCcEEEEEec
Q 032030 64 LADYIIYIIDVSGGDKIPR--------KGGPGITQAD-LLVINKTDLASAIGADLAVMERDA--LRM-RDGGPFIFAQVG 131 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~--------~~~~qi~~AD-ivViNK~DL~~~~~~~l~~~~~~i--~~~-np~a~vi~tSa~ 131 (148)
..|.+|+|||..+.+.+.. ...+.+..|- +++.||.|.... -...++...+ .++ +..-.|+.+||.
T Consensus 85 dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~ 162 (182)
T KOG0072|consen 85 DTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAV 162 (182)
T ss_pred ccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccc
Confidence 4577899999987765311 1123444454 677899998665 2222222211 111 334689999999
Q ss_pred CCCCHHHHHHhhh
Q 032030 132 WVIGIIFTLSITH 144 (148)
Q Consensus 132 ~g~gi~~l~~~~~ 144 (148)
+|+|+++..+|++
T Consensus 163 kg~Gld~~~DWL~ 175 (182)
T KOG0072|consen 163 KGEGLDPAMDWLQ 175 (182)
T ss_pred cccCCcHHHHHHH
Confidence 9999999999986
No 218
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.19 E-value=0.00049 Score=51.38 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=56.8
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchh----
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIG---- 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~---- 106 (148)
.++.+.++.|......+ .-..+|.++.+.|....+.+.. ...+.++ -++|.||+|+.+...
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~p--iilvgnK~Dl~~~~~~~~~ 126 (187)
T cd04129 49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVP--VILVGLKKDLRQDAVAKEE 126 (187)
T ss_pred EEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEeeChhhhhCcccccc
Confidence 44566777775321111 1134577787788765432110 1112344 699999999854200
Q ss_pred ------hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 ------ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 ------~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+...+..++. ...+++.+||++|.|++++|++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~ 169 (187)
T cd04129 127 YRTQRFVPIQQGKRVAKEI-GAKKYMECSALTGEGVDDVFEAAT 169 (187)
T ss_pred cccCCcCCHHHHHHHHHHh-CCcEEEEccCCCCCCHHHHHHHHH
Confidence 0112233333332 224789999999999999999886
No 219
>PRK10218 GTP-binding protein; Provisional
Probab=97.19 E-value=0.0014 Score=58.22 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=62.5
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCc-hhhhHHHH
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASA-IGADLAVM 112 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~-~~~~l~~~ 112 (148)
+..+.++.|.|....... .-..+|..++|+|+..+...+. .....++ -++++||+|+.+. ....++.+
T Consensus 67 ~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip--~IVviNKiD~~~a~~~~vl~ei 144 (607)
T PRK10218 67 DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLK--PIVVINKVDRPGARPDWVVDQV 144 (607)
T ss_pred CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCC--EEEEEECcCCCCCchhHHHHHH
Confidence 456678888886432100 1135788999999988743211 1122455 4999999998653 11333444
Q ss_pred HHHHHhcC-----CCCcEEEEEecCCC----------CHHHHHHhhh
Q 032030 113 ERDALRMR-----DGGPFIFAQVGWVI----------GIIFTLSITH 144 (148)
Q Consensus 113 ~~~i~~~n-----p~a~vi~tSa~~g~----------gi~~l~~~~~ 144 (148)
.+.+..+. -..||+++||++|. |+.+|++.+.
T Consensus 145 ~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii 191 (607)
T PRK10218 145 FDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIV 191 (607)
T ss_pred HHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHH
Confidence 44443211 23689999999998 6889987654
No 220
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.19 E-value=0.00033 Score=53.61 Aligned_cols=91 Identities=18% Similarity=0.124 Sum_probs=55.9
Q ss_pred CCCEEEEecCCceeee--ee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCC-------Cchh
Q 032030 43 KADLLLCESGGDNLAA--NF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLA-------SAIG 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~--~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~-------~~~~ 106 (148)
++.+.++.|.|..... .. .-..+|.+++|+|+.++..... ....++ ..++|+||+|++ +.
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~--p~iiviNK~D~~~~~~~l~~~-- 145 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGL--PIVLVINKIDRLILELKLPPN-- 145 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCC--CEEEEEECcccCcccccCCHH--
Confidence 3567788888864210 00 1236789999999987653211 111233 489999999986 23
Q ss_pred hhHHHHHHHHHhcCCCC------------c----EEEEEecCCCCHH
Q 032030 107 ADLAVMERDALRMRDGG------------P----FIFAQVGWVIGII 137 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a------------~----vi~tSa~~g~gi~ 137 (148)
+.++++.+.++++|+.+ | |++.|++.+-+..
T Consensus 146 ~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 146 DAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 44456666666555433 2 6778888775554
No 221
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.19 E-value=0.0011 Score=55.65 Aligned_cols=94 Identities=22% Similarity=0.165 Sum_probs=60.5
Q ss_pred CCCEEEEecCCceee-----eee------ccccCceEEEEEeCCCCCCcc-----c-cCCCCcceeeEEEEecCCCCCch
Q 032030 43 KADLLLCESGGDNLA-----ANF------SRELADYIIYIIDVSGGDKIP-----R-KGGPGITQADLLVINKTDLASAI 105 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-----~~~------~~~~~d~~i~vvDa~~~~~~~-----~-~~~~qi~~ADivViNK~DL~~~~ 105 (148)
+..+.++.|.|.... ..+ .-..+|.+++|+|+..+.... . ......+ -++|+||+|+.+.
T Consensus 46 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~p--iilVvNK~D~~~~- 122 (429)
T TIGR03594 46 GREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKP--VILVANKIDGKKE- 122 (429)
T ss_pred CeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEEECccCCcc-
Confidence 456889999996321 001 113578999999998763311 1 1111233 6899999999875
Q ss_pred hhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 106 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 106 ~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.. ...+.. . ....+++++||++|.|++++++++.
T Consensus 123 -~~--~~~~~~-~-lg~~~~~~vSa~~g~gv~~ll~~i~ 156 (429)
T TIGR03594 123 -DA--VAAEFY-S-LGFGEPIPISAEHGRGIGDLLDAIL 156 (429)
T ss_pred -cc--cHHHHH-h-cCCCCeEEEeCCcCCChHHHHHHHH
Confidence 32 122222 2 2334789999999999999999875
No 222
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.19 E-value=0.0012 Score=55.92 Aligned_cols=95 Identities=16% Similarity=0.086 Sum_probs=55.8
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCC--CCCccc-c---C--CCCcceeeEEEEecCCCCCchhhhH--
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSG--GDKIPR-K---G--GPGITQADLLVINKTDLASAIGADL-- 109 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~--~~~~~~-~---~--~~qi~~ADivViNK~DL~~~~~~~l-- 109 (148)
+..+.|+.|.|.-.. ... .-..+|..++|+|+.. +..-+. . . ....+ --++++||+|+.+.-.+.+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~-~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGIN-QLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCC-eEEEEEEccccccccHHHHHH
Confidence 567888999995311 111 1135799999999986 321110 0 0 01111 1477999999986311222
Q ss_pred --HHHHHHHHhcC--C-CCcEEEEEecCCCCHHH
Q 032030 110 --AVMERDALRMR--D-GGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 110 --~~~~~~i~~~n--p-~a~vi~tSa~~g~gi~~ 138 (148)
+++.+.++... + ..+++++||++|.|+++
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 23444444332 1 36899999999999986
No 223
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.18 E-value=0.0014 Score=55.35 Aligned_cols=95 Identities=20% Similarity=0.137 Sum_probs=60.6
Q ss_pred CCCEEEEecCCceee-e----ee------ccccCceEEEEEeCCCCCCcc-----c-cCCCCcceeeEEEEecCCCCCch
Q 032030 43 KADLLLCESGGDNLA-A----NF------SRELADYIIYIIDVSGGDKIP-----R-KGGPGITQADLLVINKTDLASAI 105 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~----~~------~~~~~d~~i~vvDa~~~~~~~-----~-~~~~qi~~ADivViNK~DL~~~~ 105 (148)
+..+.++.|.|.... . .+ .-..+|.+++|+|+..+.... . ......+ -++|+||+|+.+.
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~p--iilv~NK~D~~~~- 124 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKP--VILVVNKVDGPDE- 124 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCc--EEEEEECccCccc-
Confidence 577899999997531 0 01 113579999999998753311 0 1111234 6999999997653
Q ss_pred hhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 106 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 106 ~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
. +...+..+ + ...+++++||++|.|++++++++..
T Consensus 125 -~--~~~~~~~~-l-g~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 125 -E--ADAYEFYS-L-GLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred -h--hhHHHHHh-c-CCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 2 12233322 2 2235789999999999999988753
No 224
>PRK00049 elongation factor Tu; Reviewed
Probab=97.18 E-value=0.0014 Score=55.14 Aligned_cols=98 Identities=14% Similarity=0.178 Sum_probs=59.2
Q ss_pred CCCEEEEecCCcee--eeee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeE-EEEecCCCCCchhhh-HH-
Q 032030 43 KADLLLCESGGDNL--AANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADL-LVINKTDLASAIGAD-LA- 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~--~~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADi-vViNK~DL~~~~~~~-l~- 110 (148)
+..++|+.|.|..- .... .-..+|..++|+|+..+..-+. .....++ -+ +++||+|+++. .+ .+
T Consensus 74 ~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p--~iiVvvNK~D~~~~--~~~~~~ 149 (396)
T PRK00049 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP--YIVVFLNKCDMVDD--EELLEL 149 (396)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCC--EEEEEEeecCCcch--HHHHHH
Confidence 45688999999631 0000 1246799999999987643211 0111333 34 47999999864 33 22
Q ss_pred ---HHHHHHHhcC---CCCcEEEEEecCCC----------CHHHHHHhhh
Q 032030 111 ---VMERDALRMR---DGGPFIFAQVGWVI----------GIIFTLSITH 144 (148)
Q Consensus 111 ---~~~~~i~~~n---p~a~vi~tSa~~g~----------gi~~l~~~~~ 144 (148)
++.+.++... ...|++++||++|. |++.|++.+.
T Consensus 150 ~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~ 199 (396)
T PRK00049 150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVD 199 (396)
T ss_pred HHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHH
Confidence 3444444322 35899999999875 5667776654
No 225
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.18 E-value=0.00085 Score=50.31 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=34.2
Q ss_pred ceEEEEEeCCCCCCc-----ccc---CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcC
Q 032030 66 DYIIYIIDVSGGDKI-----PRK---GGPGITQADLLVINKTDLASAIGADLAVMERDALRMR 120 (148)
Q Consensus 66 d~~i~vvDa~~~~~~-----~~~---~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~n 120 (148)
|.++.|+|+..+... ... .....+ -++|+||+||+++ ..+....+.+++..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp--~IlVlNK~DL~~~--~~l~~~~~~~~~~~ 59 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKK--LVLVLNKIDLVPK--ENVEKWLKYLRREF 59 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCC--EEEEEehhhcCCH--HHHHHHHHHHHhhC
Confidence 678999999765321 111 112334 6999999999988 77777777776544
No 226
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.13 E-value=0.0016 Score=57.83 Aligned_cols=95 Identities=19% Similarity=0.173 Sum_probs=56.8
Q ss_pred CCCEEEEecCCcee-eeee--ccccCceEEEEEeCCCCCCccc----cC--CCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 43 KADLLLCESGGDNL-AANF--SRELADYIIYIIDVSGGDKIPR----KG--GPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 43 ~~D~IliEtsG~~~-~~~~--~~~~~d~~i~vvDa~~~~~~~~----~~--~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
+..++|+.|.|.-- .... .-..+|..++|+|+..+..-+. .. ...++ --++++||+|+++...+.++.+.
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~-~iivvvNK~D~~~~~~~~~~~i~ 181 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIR-HVVLAVNKMDLVDYDQEVFDEIV 181 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCC-eEEEEEEecccccchhHHHHHHH
Confidence 45678999999531 0001 1246789999999987643211 00 01111 13678999999853113344444
Q ss_pred HHH----HhcC-CCCcEEEEEecCCCCHHH
Q 032030 114 RDA----LRMR-DGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 114 ~~i----~~~n-p~a~vi~tSa~~g~gi~~ 138 (148)
+.+ ++.. +..+++++||++|.|+++
T Consensus 182 ~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 182 ADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 333 3322 457899999999999874
No 227
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.00048 Score=61.19 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=63.6
Q ss_pred CCCEEEEecCCce-e-eee--------e-ccccCceEEEEEeCCCCCCc----cccCCCCcceeeEEEEecCCCCCchh-
Q 032030 43 KADLLLCESGGDN-L-AAN--------F-SRELADYIIYIIDVSGGDKI----PRKGGPGITQADLLVINKTDLASAIG- 106 (148)
Q Consensus 43 ~~D~IliEtsG~~-~-~~~--------~-~~~~~d~~i~vvDa~~~~~~----~~~~~~qi~~ADivViNK~DL~~~~~- 106 (148)
+-++=+|.-.|.- + +.+ | -....|.+|.|+||.+-+.- .+...-.++ -++++|++|.+...+
T Consensus 49 ~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p--~ilaLNm~D~A~~~Gi 126 (653)
T COG0370 49 GHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIP--MILALNMIDEAKKRGI 126 (653)
T ss_pred CceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCC--eEEEeccHhhHHhcCC
Confidence 4556677777752 1 101 1 12356999999999887541 122222344 699999999876522
Q ss_pred -hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 107 -ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 107 -~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
-+.+++++.+. .||++|||++|.|++++.+....
T Consensus 127 ~ID~~~L~~~LG-----vPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 127 RIDIEKLSKLLG-----VPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred cccHHHHHHHhC-----CCEEEEEeecCCCHHHHHHHHHH
Confidence 23345555554 79999999999999999987653
No 228
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.09 E-value=0.00088 Score=50.34 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=50.4
Q ss_pred cCceEEEEEeCCCCCCccc----c------CCCCcceeeEEEEecCCCCCchh------------hhHHHHHHHHHhcCC
Q 032030 64 LADYIIYIIDVSGGDKIPR----K------GGPGITQADLLVINKTDLASAIG------------ADLAVMERDALRMRD 121 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~----~------~~~qi~~ADivViNK~DL~~~~~------------~~l~~~~~~i~~~np 121 (148)
.+|.++.+.|......+.. . ..+..+ -++|.||+||.+... -..++.++..++.+
T Consensus 76 ~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~p--iilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~- 152 (182)
T cd04172 76 DSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG- 152 (182)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC--EEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC-
Confidence 5688899999876533211 1 112344 589999999864100 11234445555432
Q ss_pred CCcEEEEEecCCCC-HHHHHHhhhh
Q 032030 122 GGPFIFAQVGWVIG-IIFTLSITHY 145 (148)
Q Consensus 122 ~a~vi~tSa~~g~g-i~~l~~~~~~ 145 (148)
-.+.+.+||++|.| ++++|+..+-
T Consensus 153 ~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 153 AATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHH
Confidence 24899999999998 9999987654
No 229
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.08 E-value=0.0019 Score=57.27 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=61.4
Q ss_pred CCCEEEEecCCceeee-ee--ccccCceEEEEEeCCCCCCcc------ccCCCCcceeeEEEEecCCCCCc-hhhhHHHH
Q 032030 43 KADLLLCESGGDNLAA-NF--SRELADYIIYIIDVSGGDKIP------RKGGPGITQADLLVINKTDLASA-IGADLAVM 112 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~-~~--~~~~~d~~i~vvDa~~~~~~~------~~~~~qi~~ADivViNK~DL~~~-~~~~l~~~ 112 (148)
+..+-++.|.|-.... .. .-..+|..+.|+|+..+...+ ......++ -++++||+|+.+. ....++.+
T Consensus 63 ~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip--~IVviNKiD~~~a~~~~v~~ei 140 (594)
T TIGR01394 63 GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLK--PIVVINKIDRPSARPDEVVDEV 140 (594)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCC--EEEEEECCCCCCcCHHHHHHHH
Confidence 3456677777753210 00 013578899999998775311 11122455 4999999999654 11223445
Q ss_pred HHHHHhcC-----CCCcEEEEEecCCC----------CHHHHHHhhh
Q 032030 113 ERDALRMR-----DGGPFIFAQVGWVI----------GIIFTLSITH 144 (148)
Q Consensus 113 ~~~i~~~n-----p~a~vi~tSa~~g~----------gi~~l~~~~~ 144 (148)
.+.+.++. -..|++++||++|. |+++|++.+.
T Consensus 141 ~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv 187 (594)
T TIGR01394 141 FDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIV 187 (594)
T ss_pred HHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHH
Confidence 55544322 13589999999995 7999988764
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.08 E-value=0.0018 Score=54.33 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=51.0
Q ss_pred CCEEEEecCCceee--eee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeE-EEEecCCCCCchhhhH-H--
Q 032030 44 ADLLLCESGGDNLA--ANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADL-LVINKTDLASAIGADL-A-- 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~--~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADi-vViNK~DL~~~~~~~l-~-- 110 (148)
..+.|+.|.|---. ..+ .-..+|..+.|+|+..+...+. .....++ -+ +++||+|++++ .+. +
T Consensus 75 ~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~--~iIvvvNK~Dl~~~--~~~~~~~ 150 (394)
T TIGR00485 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVP--YIVVFLNKCDMVDD--EELLELV 150 (394)
T ss_pred EEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC--EEEEEEEecccCCH--HHHHHHH
Confidence 34677788874210 001 1124688999999988643211 0111233 34 57999999875 332 2
Q ss_pred --HHHHHHHhcC-C--CCcEEEEEecCCC
Q 032030 111 --VMERDALRMR-D--GGPFIFAQVGWVI 134 (148)
Q Consensus 111 --~~~~~i~~~n-p--~a~vi~tSa~~g~ 134 (148)
++.+.++... + ..|++++||++|.
T Consensus 151 ~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 151 EMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHhcCCCccCccEEECcccccc
Confidence 3555555443 2 2799999999875
No 231
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.07 E-value=0.0011 Score=54.05 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=59.8
Q ss_pred CCEEEEecCC---cee---e--eee-cccc--CceEEEEEeCCCCCCccc---c-----CCCCcceeeEEEEecCCCCCc
Q 032030 44 ADLLLCESGG---DNL---A--ANF-SREL--ADYIIYIIDVSGGDKIPR---K-----GGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 44 ~D~IliEtsG---~~~---~--~~~-~~~~--~d~~i~vvDa~~~~~~~~---~-----~~~qi~~ADivViNK~DL~~~ 104 (148)
=|++.+|..- ... + ..+ .|.. .|-.+.|+.+.+++--.. + ....+. -+|++||+||+++
T Consensus 48 GD~V~~~~~~~~g~I~~i~~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~--pvIvlnK~DL~~~ 125 (301)
T COG1162 48 GDRVVFEDENNNGVIEKILPRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIE--PVIVLNKIDLLDD 125 (301)
T ss_pred cCeEEEecCCCcceEEEEecccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCc--EEEEEEccccCcc
Confidence 4888888884 321 1 122 2222 344577777766542111 0 112333 4999999999998
Q ss_pred hhhhHHH--HHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 105 IGADLAV--MERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 105 ~~~~l~~--~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
++.+. .....+ +-..+++.+|++++.|+++|.+++.
T Consensus 126 --~~~~~~~~~~~y~--~~gy~v~~~s~~~~~~~~~l~~~l~ 163 (301)
T COG1162 126 --EEAAVKELLREYE--DIGYPVLFVSAKNGDGLEELAELLA 163 (301)
T ss_pred --hHHHHHHHHHHHH--hCCeeEEEecCcCcccHHHHHHHhc
Confidence 66553 333333 3557999999999999999988764
No 232
>PRK12735 elongation factor Tu; Reviewed
Probab=97.06 E-value=0.0019 Score=54.36 Aligned_cols=98 Identities=12% Similarity=0.152 Sum_probs=59.1
Q ss_pred CCCEEEEecCCcee--eeee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeE-EEEecCCCCCchhhhH-H-
Q 032030 43 KADLLLCESGGDNL--AANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADL-LVINKTDLASAIGADL-A- 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~--~~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADi-vViNK~DL~~~~~~~l-~- 110 (148)
+.-+.|+.|.|.-- .... .-..+|..++|+|+..+...+. .....++ -+ +++||+|+.+. +++ +
T Consensus 74 ~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~--~iivvvNK~Dl~~~--~~~~~~ 149 (396)
T PRK12735 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP--YIVVFLNKCDMVDD--EELLEL 149 (396)
T ss_pred CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCC--eEEEEEEecCCcch--HHHHHH
Confidence 34578999999531 0000 1135789999999987643211 0112344 34 47999999854 332 2
Q ss_pred ---HHHHHHHhcC-C--CCcEEEEEecCCC----------CHHHHHHhhh
Q 032030 111 ---VMERDALRMR-D--GGPFIFAQVGWVI----------GIIFTLSITH 144 (148)
Q Consensus 111 ---~~~~~i~~~n-p--~a~vi~tSa~~g~----------gi~~l~~~~~ 144 (148)
++.+.++... + ..+++++||++|. ++++|++.+.
T Consensus 150 ~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~ 199 (396)
T PRK12735 150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVD 199 (396)
T ss_pred HHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHH
Confidence 3444444332 2 4799999999984 6777777654
No 233
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.03 E-value=0.0014 Score=51.48 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=50.6
Q ss_pred cCceEEEEEeCCCCCCccc----c------CCCCcceeeEEEEecCCCCCchh------------hhHHHHHHHHHhcCC
Q 032030 64 LADYIIYIIDVSGGDKIPR----K------GGPGITQADLLVINKTDLASAIG------------ADLAVMERDALRMRD 121 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~----~------~~~qi~~ADivViNK~DL~~~~~------------~~l~~~~~~i~~~np 121 (148)
.+|.++.|.|......+.. + ..+..+ -++|.||+||.+... -..++.+++.++.+
T Consensus 84 ~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~p--iilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~- 160 (232)
T cd04174 84 DSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTR--ILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG- 160 (232)
T ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCC--EEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC-
Confidence 5788899999876543211 0 112333 489999999953100 12234555555543
Q ss_pred CC-cEEEEEecCCC-CHHHHHHhhhh
Q 032030 122 GG-PFIFAQVGWVI-GIIFTLSITHY 145 (148)
Q Consensus 122 ~a-~vi~tSa~~g~-gi~~l~~~~~~ 145 (148)
+ +.+.|||++|. |++++|..++-
T Consensus 161 -~~~~~EtSAktg~~~V~e~F~~~~~ 185 (232)
T cd04174 161 -AEVYLECSAFTSEKSIHSIFRSASL 185 (232)
T ss_pred -CCEEEEccCCcCCcCHHHHHHHHHH
Confidence 4 68899999998 89999988753
No 234
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.03 E-value=0.0038 Score=48.14 Aligned_cols=74 Identities=14% Similarity=0.029 Sum_probs=50.6
Q ss_pred eEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHH-hcC--CCCc--EEEEEecCCCC
Q 032030 67 YIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVMERDAL-RMR--DGGP--FIFAQVGWVIG 135 (148)
Q Consensus 67 ~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~-~~n--p~a~--vi~tSa~~g~g 135 (148)
.++.++|+.++..... .....++ -+||+||+|.++. .+..+....++ .+. |... ++.+|+.++.|
T Consensus 109 ~vvlliD~r~~~~~~D~em~~~l~~~~i~--~~vv~tK~DKi~~--~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~G 184 (200)
T COG0218 109 GVVLLIDARHPPKDLDREMIEFLLELGIP--VIVVLTKADKLKK--SERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKG 184 (200)
T ss_pred EEEEEEECCCCCcHHHHHHHHHHHHcCCC--eEEEEEccccCCh--hHHHHHHHHHHHHhcCCCCccceEEEEecccccC
Confidence 3588999998865311 1122344 7999999999997 66655444454 222 3223 88899999999
Q ss_pred HHHHHHhhh
Q 032030 136 IIFTLSITH 144 (148)
Q Consensus 136 i~~l~~~~~ 144 (148)
++++.+.+.
T Consensus 185 i~~l~~~i~ 193 (200)
T COG0218 185 IDELKAKIL 193 (200)
T ss_pred HHHHHHHHH
Confidence 999987764
No 235
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.0013 Score=50.83 Aligned_cols=75 Identities=20% Similarity=0.134 Sum_probs=51.5
Q ss_pred cCceEEEEEeCCCCCC---c-------cccCCCCcceeeEEEEecCCCCCchhhhH--HHHHHHHHhcCCCCcEEEEEec
Q 032030 64 LADYIIYIIDVSGGDK---I-------PRKGGPGITQADLLVINKTDLASAIGADL--AVMERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~---~-------~~~~~~qi~~ADivViNK~DL~~~~~~~l--~~~~~~i~~~np~a~vi~tSa~ 131 (148)
.++.++.|+|...... + ....++..+ -++|.||+|+.++ .++ ++-++..++. +.+.+.||||
T Consensus 84 gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~--~~LvGNK~D~~~~--R~V~~e~ge~lA~e~--G~~F~EtSAk 157 (207)
T KOG0078|consen 84 GAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVV--KILVGNKCDLEEK--RQVSKERGEALAREY--GIKFFETSAK 157 (207)
T ss_pred hcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCc--EEEeecccccccc--ccccHHHHHHHHHHh--CCeEEEcccc
Confidence 4566788888765321 1 111122344 5999999999874 322 4566666654 6899999999
Q ss_pred CCCCHHHHHHhhh
Q 032030 132 WVIGIIFTLSITH 144 (148)
Q Consensus 132 ~g~gi~~l~~~~~ 144 (148)
+|.|+++.|-.++
T Consensus 158 ~~~NI~eaF~~La 170 (207)
T KOG0078|consen 158 TNFNIEEAFLSLA 170 (207)
T ss_pred CCCCHHHHHHHHH
Confidence 9999999987765
No 236
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.99 E-value=0.0017 Score=57.51 Aligned_cols=98 Identities=17% Similarity=0.130 Sum_probs=58.5
Q ss_pred CEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc------ccCCCCcceeeEEEEecCCCCCchh---------
Q 032030 45 DLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP------RKGGPGITQADLLVINKTDLASAIG--------- 106 (148)
Q Consensus 45 D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~------~~~~~qi~~ADivViNK~DL~~~~~--------- 106 (148)
.+.|+.|.|..-...+. -..+|..++|+|+..+...+ ......++ -++++||+|+.+...
T Consensus 72 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp--iIvviNK~D~~~~~~~~~~~~~~e 149 (586)
T PRK04004 72 GLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP--FVVAANKIDRIPGWKSTEDAPFLE 149 (586)
T ss_pred CEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC--EEEEEECcCCchhhhhhcCchHHH
Confidence 36889999864211111 13578899999998753211 01112344 589999999863200
Q ss_pred ----------hh----HHHHHHHHH-------------hcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 ----------AD----LAVMERDAL-------------RMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 ----------~~----l~~~~~~i~-------------~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.. +.++...+. ++....+++++||++|.|+++|++.+.
T Consensus 150 ~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 150 SIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 00 011112222 122457899999999999999987753
No 237
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=96.97 E-value=0.0018 Score=53.64 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=39.5
Q ss_pred eEEEEecCC-CCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 92 DLLVINKTD-LASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 92 DivViNK~D-L~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
-+||+||+| ..++ ++++.+.+.+.+.......+++||.++.|+++|+..+.-
T Consensus 278 ~ivv~NKiD~~~~~--e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~ 330 (369)
T COG0536 278 RIVVLNKIDLPLDE--EELEELKKALAEALGWEVFYLISALTREGLDELLRALAE 330 (369)
T ss_pred eEEEEeccCCCcCH--HHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHH
Confidence 489999999 5555 677777777776554444444999999999999877654
No 238
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.97 E-value=0.0013 Score=49.04 Aligned_cols=99 Identities=16% Similarity=0.108 Sum_probs=58.4
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCccc----c------CCCCcceeeEEEEecCCCCCchh----
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPR----K------GGPGITQADLLVINKTDLASAIG---- 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~~----~------~~~qi~~ADivViNK~DL~~~~~---- 106 (148)
+.+-+.+|.|.-....+. -..+|.++.+.|......+.. . ..+..+ -++|.||+||.+...
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~--iilVgnK~DL~~~~~~~~~ 126 (178)
T cd04131 49 IELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTK--VLLVGCKTDLRTDLSTLME 126 (178)
T ss_pred EEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCC--EEEEEEChhhhcChhHHHH
Confidence 455566777742111111 135688899999876543211 1 112344 588999999954100
Q ss_pred --------hhHHHHHHHHHhcCCCCcEEEEEecCCCC-HHHHHHhhhh
Q 032030 107 --------ADLAVMERDALRMRDGGPFIFAQVGWVIG-IIFTLSITHY 145 (148)
Q Consensus 107 --------~~l~~~~~~i~~~np~a~vi~tSa~~g~g-i~~l~~~~~~ 145 (148)
-..++..+..++.+ -.+.+.+||++|+| ++++|...+.
T Consensus 127 ~~~~~~~~v~~~e~~~~a~~~~-~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 127 LSHQRQAPVSYEQGCAIAKQLG-AEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHhcCCCCCCHHHHHHHHHHhC-CCEEEECccCcCCcCHHHHHHHHHH
Confidence 11123444444332 23789999999995 9999988765
No 239
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.96 E-value=0.0011 Score=56.70 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=54.9
Q ss_pred CCCEEEEecCCceee--eee-ccccCceEEEEEeCCCCCC-------ccc-c-----CCCCcceee-EEEEecCCC--CC
Q 032030 43 KADLLLCESGGDNLA--ANF-SRELADYIIYIIDVSGGDK-------IPR-K-----GGPGITQAD-LLVINKTDL--AS 103 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--~~~-~~~~~d~~i~vvDa~~~~~-------~~~-~-----~~~qi~~AD-ivViNK~DL--~~ 103 (148)
+..+.||.|.|-.-. ... .-..+|..+.|+|+..|.. .+. . ....++ . ++++||.|+ ++
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~--~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVK--QMIVCINKMDDKTVN 161 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCC--eEEEEEEccccccch
Confidence 456778888884310 000 1236789999999988741 010 0 001222 4 589999994 32
Q ss_pred chhhhHHHHHHHHHh----c--CC-CCcEEEEEecCCCCHHH
Q 032030 104 AIGADLAVMERDALR----M--RD-GGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 104 ~~~~~l~~~~~~i~~----~--np-~a~vi~tSa~~g~gi~~ 138 (148)
.-.+.++.+.+.+++ . ++ ..+++++|+.+|.|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 211444444444433 2 22 47899999999999863
No 240
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=96.91 E-value=0.0017 Score=50.54 Aligned_cols=98 Identities=12% Similarity=0.084 Sum_probs=56.3
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCccc----c------CCCCcceeeEEEEecCCCCCchh----
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPR----K------GGPGITQADLLVINKTDLASAIG---- 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~~----~------~~~qi~~ADivViNK~DL~~~~~---- 106 (148)
+.+-+.+|+|......+. -..+|.++++.|....+.+.. . ..+.++ -++|.||+||.+...
T Consensus 49 v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~p--iiLVgnK~DL~~~~~~~~~ 126 (222)
T cd04173 49 IELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAK--VVLVGCKLDMRTDLATLRE 126 (222)
T ss_pred EEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC--EEEEEECcccccchhhhhh
Confidence 445556666642111111 136788999999877643211 1 112344 588999999965300
Q ss_pred --------hhHHHHHHHHHhcCCCCcEEEEEecCCCC-HHHHHHhhh
Q 032030 107 --------ADLAVMERDALRMRDGGPFIFAQVGWVIG-IIFTLSITH 144 (148)
Q Consensus 107 --------~~l~~~~~~i~~~np~a~vi~tSa~~g~g-i~~l~~~~~ 144 (148)
-..++..+..++ ..-.+.+.+||+++.+ ++++|...+
T Consensus 127 ~~~~~~~pIs~e~g~~~ak~-~~~~~y~E~SAk~~~~~V~~~F~~~~ 172 (222)
T cd04173 127 LSKQRLIPVTHEQGTVLAKQ-VGAVSYVECSSRSSERSVRDVFHVAT 172 (222)
T ss_pred hhhccCCccCHHHHHHHHHH-cCCCEEEEcCCCcCCcCHHHHHHHHH
Confidence 011223333333 2234899999999985 999998754
No 241
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.90 E-value=0.0029 Score=49.19 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=43.3
Q ss_pred ccCceEEEEEeCCCCCCccc-----cC-CCCcceeeE-EEEecCCCCCchhhhHHHHHHHH-----HhcCCCCcEEEEEe
Q 032030 63 ELADYIIYIIDVSGGDKIPR-----KG-GPGITQADL-LVINKTDLASAIGADLAVMERDA-----LRMRDGGPFIFAQV 130 (148)
Q Consensus 63 ~~~d~~i~vvDa~~~~~~~~-----~~-~~qi~~ADi-vViNK~DL~~~~~~~l~~~~~~i-----~~~np~a~vi~tSa 130 (148)
..+|.+++++|+..+..... .. ...++ .+ +|+||+|+.+.. ..++++.+.+ ++..++.+|+++||
T Consensus 102 k~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p--~vi~VvnK~D~~~~~-~~~~~~~~~l~~~~~~~~~~~~ki~~iSa 178 (225)
T cd01882 102 KVADLVLLLIDASFGFEMETFEFLNILQVHGFP--RVMGVLTHLDLFKKN-KTLRKTKKRLKHRFWTEVYQGAKLFYLSG 178 (225)
T ss_pred HhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCC--eEEEEEeccccCCcH-HHHHHHHHHHHHHHHHhhCCCCcEEEEee
Confidence 35789999999987643211 00 11223 34 499999998540 2344444333 34568999999999
Q ss_pred cCCC
Q 032030 131 GWVI 134 (148)
Q Consensus 131 ~~g~ 134 (148)
++..
T Consensus 179 ~~~~ 182 (225)
T cd01882 179 IVHG 182 (225)
T ss_pred ccCC
Confidence 9864
No 242
>PRK14974 cell division protein FtsY; Provisional
Probab=96.90 E-value=0.0031 Score=52.26 Aligned_cols=93 Identities=20% Similarity=0.245 Sum_probs=59.7
Q ss_pred hhcCCCEEEEecCCceee-eeecc--------ccCceEEEEEeCCCCCCccc--cCCCCcceeeEEEEecCCCCCchhhh
Q 032030 40 NLFKADLLLCESGGDNLA-ANFSR--------ELADYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 40 ~~~~~D~IliEtsG~~~~-~~~~~--------~~~d~~i~vvDa~~~~~~~~--~~~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
...++|+|+|+|.|.... ..+.. ...|.++.|+|+..+.+... ..-.+.-..|-+++||.|.....+.-
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G~~ 298 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAA 298 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCccHH
Confidence 345799999999998642 11100 12466789999987754321 11111223489999999998775554
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHH
Q 032030 109 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 140 (148)
Q Consensus 109 l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~ 140 (148)
+..... -+.||.+++ +|++++.|.
T Consensus 299 ls~~~~------~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 299 LSIAYV------IGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred HHHHHH------HCcCEEEEe--CCCChhhcc
Confidence 444332 257898988 689888775
No 243
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=96.88 E-value=0.001 Score=49.92 Aligned_cols=77 Identities=18% Similarity=0.137 Sum_probs=52.3
Q ss_pred cCceEEEEEeCCCCCCccccC------C--CCcceeeEEEEecCCCCCchhhhH--HHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKIPRKG------G--PGITQADLLVINKTDLASAIGADL--AVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~~~------~--~qi~~ADivViNK~DL~~~~~~~l--~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
..+-.+.|.|.+..+.+++.+ . ..-+.+-+||.||+||-.+ ..+ +..+++.+ --+|..+.|||+.+
T Consensus 85 gSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee--R~Vt~qeAe~YAe--svGA~y~eTSAk~N 160 (218)
T KOG0088|consen 85 GSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE--RQVTRQEAEAYAE--SVGALYMETSAKDN 160 (218)
T ss_pred CCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh--hhhhHHHHHHHHH--hhchhheecccccc
Confidence 345568888887765433211 1 1235567999999999655 433 23445555 35678899999999
Q ss_pred CCHHHHHHhhh
Q 032030 134 IGIIFTLSITH 144 (148)
Q Consensus 134 ~gi~~l~~~~~ 144 (148)
+|++++|+.+.
T Consensus 161 ~Gi~elFe~Lt 171 (218)
T KOG0088|consen 161 VGISELFESLT 171 (218)
T ss_pred cCHHHHHHHHH
Confidence 99999998764
No 244
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0042 Score=54.47 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=53.7
Q ss_pred cCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHH-------HhcCCCCcEEEEEe
Q 032030 64 LADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVMERDA-------LRMRDGGPFIFAQV 130 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i-------~~~np~a~vi~tSa 130 (148)
..|.++.||-+..|-.-+. .+..+.| -+|.+||+|... +..+++.+.+ +.+..+.+++++||
T Consensus 224 vtDIvVLVVAadDGVmpQT~EaIkhAk~A~Vp--iVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSA 298 (683)
T KOG1145|consen 224 VTDIVVLVVAADDGVMPQTLEAIKHAKSANVP--IVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISA 298 (683)
T ss_pred cccEEEEEEEccCCccHhHHHHHHHHHhcCCC--EEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeec
Confidence 3577788888776633211 1223566 689999999764 4556655544 45667889999999
Q ss_pred cCCCCHHHHHHhhh
Q 032030 131 GWVIGIIFTLSITH 144 (148)
Q Consensus 131 ~~g~gi~~l~~~~~ 144 (148)
++|.|++.|.+.+.
T Consensus 299 l~g~nl~~L~eail 312 (683)
T KOG1145|consen 299 LTGENLDLLEEAIL 312 (683)
T ss_pred ccCCChHHHHHHHH
Confidence 99999999988764
No 245
>PLN00043 elongation factor 1-alpha; Provisional
Probab=96.88 E-value=0.004 Score=53.39 Aligned_cols=92 Identities=17% Similarity=0.120 Sum_probs=51.8
Q ss_pred CCEEEEecCCceee-ee-e-ccccCceEEEEEeCCCCCC-----c-cc--cC-----CCCcceee-EEEEecCCCCCc--
Q 032030 44 ADLLLCESGGDNLA-AN-F-SRELADYIIYIIDVSGGDK-----I-PR--KG-----GPGITQAD-LLVINKTDLASA-- 104 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~-~-~~~~~d~~i~vvDa~~~~~-----~-~~--~~-----~~qi~~AD-ivViNK~DL~~~-- 104 (148)
.-+-+|.|.|-... .. . .-..+|..+.|+|+..+.- . .. .+ ...++ - ++++||+|+.+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~--~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVK--QMICCCNKMDATTPKY 162 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCC--cEEEEEEcccCCchhh
Confidence 34566677773210 00 0 1135788999999987521 0 00 00 01222 3 667999998731
Q ss_pred hhhh----HHHHHHHHHhcC--C-CCcEEEEEecCCCCHH
Q 032030 105 IGAD----LAVMERDALRMR--D-GGPFIFAQVGWVIGII 137 (148)
Q Consensus 105 ~~~~----l~~~~~~i~~~n--p-~a~vi~tSa~~g~gi~ 137 (148)
..+. .+++.+.+++.. + ..+++++||++|.|+.
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 0022 344555555433 2 4789999999999985
No 246
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.86 E-value=0.0017 Score=56.28 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=47.1
Q ss_pred cCceEEEEEeCCCCCC-----ccccCCCCcc-eeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecC
Q 032030 64 LADYIIYIIDVSGGDK-----IPRKGGPGIT-QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~-----~~~~~~~qi~-~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~ 132 (148)
..|.+|-+|||.+..- +-...++.-+ .+.++++||+||+++ ++...-.++.+..| .++++-||.-
T Consensus 174 rSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~--~qr~aWa~YF~~~n--i~~vf~SA~~ 244 (562)
T KOG1424|consen 174 RSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPP--EQRVAWAEYFRQNN--IPVVFFSALA 244 (562)
T ss_pred hcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCH--HHHHHHHHHHHhcC--ceEEEEeccc
Confidence 5699999999987632 2112223333 457999999999999 87777777777655 7888888874
No 247
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.00056 Score=51.79 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=53.4
Q ss_pred cCceEEEEEeCCCCCCcccc-----------CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHH--hcC--CCCcEEEE
Q 032030 64 LADYIIYIIDVSGGDKIPRK-----------GGPGITQADLLVINKTDLASAIGADLAVMERDAL--RMR--DGGPFIFA 128 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~~-----------~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~--~~n--p~a~vi~t 128 (148)
+++.+++++|+...+.++.. .....| -+++.||.|+.+. .+.+.+..... +.+ |..++.++
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p--~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAP--VLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCc--hhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccc
Confidence 45778999999886543211 112344 5888999999887 55555555444 444 56799999
Q ss_pred EecCCCCHHHHHHhh
Q 032030 129 QVGWVIGIIFTLSIT 143 (148)
Q Consensus 129 Sa~~g~gi~~l~~~~ 143 (148)
||.+|+|+++=..|+
T Consensus 168 Sal~gegv~egi~w~ 182 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWL 182 (197)
T ss_pred hhhhcccHHHHHHHH
Confidence 999999998877664
No 248
>CHL00071 tufA elongation factor Tu
Probab=96.78 E-value=0.0043 Score=52.42 Aligned_cols=90 Identities=11% Similarity=0.120 Sum_probs=53.4
Q ss_pred CCCEEEEecCCcee--eeee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhH----
Q 032030 43 KADLLLCESGGDNL--AANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADL---- 109 (148)
Q Consensus 43 ~~D~IliEtsG~~~--~~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l---- 109 (148)
+.-+.|+.|.|... ...+ .-..+|..++|+|+..+..-+. .....++ --++++||+|+++. .++
T Consensus 74 ~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~-~iIvvvNK~D~~~~--~~~~~~~ 150 (409)
T CHL00071 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVP-NIVVFLNKEDQVDD--EELLELV 150 (409)
T ss_pred CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEEEccCCCCH--HHHHHHH
Confidence 34578889998431 0001 1135799999999987643110 0011222 02578999999875 332
Q ss_pred -HHHHHHHHhcC--C-CCcEEEEEecCCCC
Q 032030 110 -AVMERDALRMR--D-GGPFIFAQVGWVIG 135 (148)
Q Consensus 110 -~~~~~~i~~~n--p-~a~vi~tSa~~g~g 135 (148)
+++.+.++... + ..|++++||++|.+
T Consensus 151 ~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 151 ELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 24555555433 2 37999999999863
No 249
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=96.71 E-value=0.0032 Score=45.11 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=60.0
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCc---c-------ccCCCCcceeeEEEEecCCCCCchhhhH
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKI---P-------RKGGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~---~-------~~~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
.+.+-+.+++|......+ .-...|.++.+.|......+ . ...+...+ -+++.||.|+.+.-.-..
T Consensus 47 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~--iivvg~K~D~~~~~~v~~ 124 (162)
T PF00071_consen 47 PVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIP--IIVVGNKSDLSDEREVSV 124 (162)
T ss_dssp EEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSE--EEEEEETTTGGGGSSSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ceeeeccccccccccchh
Confidence 344555666664211111 01346778888887654221 1 11121234 588889999987311233
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+..++..++.+ .+.+.+||+++.|+.++|..+.
T Consensus 125 ~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~~i 157 (162)
T PF00071_consen 125 EEAQEFAKELG--VPYFEVSAKNGENVKEIFQELI 157 (162)
T ss_dssp HHHHHHHHHTT--SEEEEEBTTTTTTHHHHHHHHH
T ss_pred hHHHHHHHHhC--CEEEEEECCCCCCHHHHHHHHH
Confidence 46666777655 8999999999999999998764
No 250
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.0056 Score=51.22 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=56.6
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccccCC------CCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPRKGG------PGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~~~~------~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
+=++|+..|.|--+. -.+ ...-+|+.|.+|||..|---+.+.. -.+++ -++.+||+||+++-.+..+++.
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrh-vvvAVNKmDLvdy~e~~F~~I~ 163 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRH-VVVAVNKMDLVDYSEEVFEAIV 163 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcE-EEEEEeeecccccCHHHHHHHH
Confidence 346788888885432 111 1234688899999988732111100 01221 4788999999997333444444
Q ss_pred HHH----HhcC-CCCcEEEEEecCCCCHH
Q 032030 114 RDA----LRMR-DGGPFIFAQVGWVIGII 137 (148)
Q Consensus 114 ~~i----~~~n-p~a~vi~tSa~~g~gi~ 137 (148)
+.. +++. .....+|+||+.|.|+-
T Consensus 164 ~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 164 ADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHcCCCcceEEechhccCCccc
Confidence 333 3333 33477999999999874
No 251
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.63 E-value=0.0048 Score=52.12 Aligned_cols=57 Identities=16% Similarity=0.045 Sum_probs=41.8
Q ss_pred cCceEEEEEeCCCCCCccc------c--CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCc
Q 032030 64 LADYIIYIIDVSGGDKIPR------K--GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGP 124 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~------~--~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~ 124 (148)
..|+++.|+||..+....- . .++.-. =++|+||+||++. +.+++-..+++...|..+
T Consensus 146 ~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKk--LILVLNK~DLVPr--Ev~e~Wl~YLr~~~ptv~ 210 (435)
T KOG2484|consen 146 ASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKK--LILVLNKIDLVPR--EVVEKWLVYLRREGPTVA 210 (435)
T ss_pred hhheEEEeeeccCCCCCCChhHHHHHHhccCCce--EEEEeehhccCCH--HHHHHHHHHHHhhCCcce
Confidence 5699999999987754210 1 111112 4899999999999 998988899998777654
No 252
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.63 E-value=0.0071 Score=49.67 Aligned_cols=92 Identities=16% Similarity=0.185 Sum_probs=56.7
Q ss_pred hcCCCEEEEecCCceee-e--------------eeccccCceEEEEEeCCCCCCccccCCC--CcceeeEEEEecCCCCC
Q 032030 41 LFKADLLLCESGGDNLA-A--------------NFSRELADYIIYIIDVSGGDKIPRKGGP--GITQADLLVINKTDLAS 103 (148)
Q Consensus 41 ~~~~D~IliEtsG~~~~-~--------------~~~~~~~d~~i~vvDa~~~~~~~~~~~~--qi~~ADivViNK~DL~~ 103 (148)
..++|+|+|+|.|.... . ...+...+..+.|+|+..+.+....... ..-..+-+++||.|...
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giIlTKlD~t~ 273 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTA 273 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCCCCC
Confidence 45899999999998531 0 0112234567899999876432111111 11124689999999776
Q ss_pred chhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHH
Q 032030 104 AIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 140 (148)
Q Consensus 104 ~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~ 140 (148)
..+.-+.. .... +.||..++ +|++++.|-
T Consensus 274 ~~G~~l~~----~~~~--~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 274 KGGVVFAI----ADEL--GIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CccHHHHH----HHHH--CCCEEEEe--CCCChhhCc
Confidence 53333333 3322 57999998 578887764
No 253
>PLN03127 Elongation factor Tu; Provisional
Probab=96.58 E-value=0.0048 Score=52.89 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=55.4
Q ss_pred CCEEEEecCCceee-e-ee-ccccCceEEEEEeCCCCCCccc------cCCCCcceee-EEEEecCCCCCchhhhH-HHH
Q 032030 44 ADLLLCESGGDNLA-A-NF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQAD-LLVINKTDLASAIGADL-AVM 112 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~-~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~AD-ivViNK~DL~~~~~~~l-~~~ 112 (148)
.-++||.|.|.--. . .. .-..+|..++|+|+..+..-+. .....++ . ++++||+|+++. .++ +.+
T Consensus 124 ~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip--~iIvviNKiDlv~~--~~~~~~i 199 (447)
T PLN03127 124 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVP--SLVVFLNKVDVVDD--EELLELV 199 (447)
T ss_pred eEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCC--eEEEEEEeeccCCH--HHHHHHH
Confidence 45788999996321 0 00 1134799999999987642111 0111233 3 578999999864 332 233
Q ss_pred HHHHHhc----C---CCCcEEEEEec---CCCC-------HHHHHHhhh
Q 032030 113 ERDALRM----R---DGGPFIFAQVG---WVIG-------IIFTLSITH 144 (148)
Q Consensus 113 ~~~i~~~----n---p~a~vi~tSa~---~g~g-------i~~l~~~~~ 144 (148)
.+.+++. . ...|+++.||. +|.| +.+|++.+.
T Consensus 200 ~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~ 248 (447)
T PLN03127 200 EMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVD 248 (447)
T ss_pred HHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHH
Confidence 3233221 1 24688888875 4555 677777654
No 254
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=96.52 E-value=0.0045 Score=50.88 Aligned_cols=45 Identities=9% Similarity=-0.004 Sum_probs=34.8
Q ss_pred eEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHH
Q 032030 92 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 141 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~ 141 (148)
-++|+||+|+.+. .+.. +.++...+..+++++||+.+.++++|.+
T Consensus 217 vI~VlNK~Dl~~~--~~~~---~~l~~~~~~~~iI~iSA~~e~~L~~L~~ 261 (318)
T cd01899 217 MVIAANKADIPDA--ENNI---SKLRLKYPDEIVVPTSAEAELALRRAAK 261 (318)
T ss_pred EEEEEEHHHccCh--HHHH---HHHHhhCCCCeEEEEeCcccccHHHHHH
Confidence 5799999998765 4432 2444445678899999999999999986
No 255
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.46 E-value=0.0076 Score=49.51 Aligned_cols=72 Identities=19% Similarity=0.071 Sum_probs=49.0
Q ss_pred cCceEEEEEeCCCCCCcccc----CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 64 LADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~~----~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
..|.++-|+|+..+...... .....+ .++|+||+||++. ..+++-.+.+.+.+ ....+.++++++.+...+
T Consensus 34 ~~d~vvevvDar~P~~s~~~~l~~~v~~k~--~i~vlNK~DL~~~--~~~~~W~~~~~~~~-~~~~~~v~~~~~~~~~~i 108 (322)
T COG1161 34 SVDVVVEVVDARDPLGTRNPELERIVKEKP--KLLVLNKADLAPK--EVTKKWKKYFKKEE-GIKPIFVSAKSRQGGKKI 108 (322)
T ss_pred cCCEEEEEEeccccccccCccHHHHHccCC--cEEEEehhhcCCH--HHHHHHHHHHHhcC-CCccEEEEeecccCccch
Confidence 46888999999877543211 111222 3999999999998 77777766666554 344567777777777666
Q ss_pred H
Q 032030 140 L 140 (148)
Q Consensus 140 ~ 140 (148)
.
T Consensus 109 ~ 109 (322)
T COG1161 109 R 109 (322)
T ss_pred H
Confidence 5
No 256
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.015 Score=48.87 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=59.4
Q ss_pred cCCCEEEEecCCcee-eeee--ccccCceEEEEEeCCCCCCccc---cC-CCCcceeeEEEEecCCCCCchhhh----HH
Q 032030 42 FKADLLLCESGGDNL-AANF--SRELADYIIYIIDVSGGDKIPR---KG-GPGITQADLLVINKTDLASAIGAD----LA 110 (148)
Q Consensus 42 ~~~D~IliEtsG~~~-~~~~--~~~~~d~~i~vvDa~~~~~~~~---~~-~~qi~~ADivViNK~DL~~~~~~~----l~ 110 (148)
.+..+-+|...|-+- .-+. ....-|+.+.|+|+..|.+.+. .. ...+----+||+||+|+.++ .+ ++
T Consensus 68 e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE--~qr~ski~ 145 (522)
T KOG0461|consen 68 EQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPE--NQRASKIE 145 (522)
T ss_pred ccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccc--hhhhhHHH
Confidence 356666777777541 1111 1234577899999987755322 11 11111114899999998876 33 33
Q ss_pred HHHHH----HHh--cCCCCcEEEEEecCC----CCHHHHHHhh
Q 032030 111 VMERD----ALR--MRDGGPFIFAQVGWV----IGIIFTLSIT 143 (148)
Q Consensus 111 ~~~~~----i~~--~np~a~vi~tSa~~g----~gi~~l~~~~ 143 (148)
+..+. ++. ...++||+++||+.| +++.+|.+.+
T Consensus 146 k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l 188 (522)
T KOG0461|consen 146 KSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEAL 188 (522)
T ss_pred HHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHH
Confidence 33333 331 234589999999999 7887776654
No 257
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.41 E-value=0.0077 Score=45.84 Aligned_cols=76 Identities=13% Similarity=-0.046 Sum_probs=47.8
Q ss_pred cCceEEEEEeCCCCCCccc---------cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 032030 64 LADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI 134 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~---------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~ 134 (148)
.++.++.+.|......+.. .....++ -+++.||+|+.+. ....+..+..+. .+.+.+++||++|.
T Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--i~lv~nK~Dl~~~--~~~~~~~~~~~~--~~~~~~e~Sa~~~~ 154 (215)
T PTZ00132 81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIP--IVLVGNKVDVKDR--QVKARQITFHRK--KNLQYYDISAKSNY 154 (215)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--EEEEEECccCccc--cCCHHHHHHHHH--cCCEEEEEeCCCCC
Confidence 3567788888765422100 0112344 4678999999754 322233333333 23578999999999
Q ss_pred CHHHHHHhhhh
Q 032030 135 GIIFTLSITHY 145 (148)
Q Consensus 135 gi~~l~~~~~~ 145 (148)
|+++.+.+++.
T Consensus 155 ~v~~~f~~ia~ 165 (215)
T PTZ00132 155 NFEKPFLWLAR 165 (215)
T ss_pred CHHHHHHHHHH
Confidence 99999988774
No 258
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.41 E-value=0.006 Score=50.43 Aligned_cols=43 Identities=21% Similarity=0.144 Sum_probs=35.2
Q ss_pred eEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 92 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
-++|+||+|+.+. ++++.+.+.. +.+++||+++.|+++|.+.+
T Consensus 242 ~l~v~NKiD~~~~--e~~~~l~~~~-------~~v~isa~~~~nld~L~e~i 284 (365)
T COG1163 242 ALYVVNKIDLPGL--EELERLARKP-------NSVPISAKKGINLDELKERI 284 (365)
T ss_pred eEEEEecccccCH--HHHHHHHhcc-------ceEEEecccCCCHHHHHHHH
Confidence 6899999999998 7666665433 67999999999999987754
No 259
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.37 E-value=0.027 Score=42.93 Aligned_cols=76 Identities=20% Similarity=-0.011 Sum_probs=56.1
Q ss_pred CceEEEEEeCCCCCCccc-----cC--CCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHH
Q 032030 65 ADYIIYIIDVSGGDKIPR-----KG--GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 137 (148)
Q Consensus 65 ~d~~i~vvDa~~~~~~~~-----~~--~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~ 137 (148)
+...|++||.+.+..... .. ...++ -+|.+||.||.+. .--+++.+.+...+-+.|++.++|.++.|+.
T Consensus 92 a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip--~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~ 167 (187)
T COG2229 92 AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIP--VVVAINKQDLFDA--LPPEKIREALKLELLSVPVIEIDATEGEGAR 167 (187)
T ss_pred cceEEEEEecCCCcchHHHHHHHHHhhccCCC--EEEEeeccccCCC--CCHHHHHHHHHhccCCCceeeeecccchhHH
Confidence 444589999887755310 00 11144 5899999999988 6667888888866667899999999999998
Q ss_pred HHHHhhh
Q 032030 138 FTLSITH 144 (148)
Q Consensus 138 ~l~~~~~ 144 (148)
+-++.+.
T Consensus 168 ~~L~~ll 174 (187)
T COG2229 168 DQLDVLL 174 (187)
T ss_pred HHHHHHH
Confidence 8877654
No 260
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=96.33 E-value=0.015 Score=49.83 Aligned_cols=70 Identities=20% Similarity=0.086 Sum_probs=43.8
Q ss_pred cCceEEEEEeCCCCCCccc-----cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHH
Q 032030 64 LADYIIYIIDVSGGDKIPR-----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~-----~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~ 138 (148)
.+|.+++|+|+........ ......+ -++|+||+|+... . .+ +..+. ...+++.+||++ .|+++
T Consensus 282 ~aD~il~V~D~s~~~s~~~~~l~~~~~~~~p--iIlV~NK~Dl~~~--~-~~---~~~~~--~~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 282 QADLVIYVLDASQPLTKDDFLIIDLNKSKKP--FILVLNKIDLKIN--S-LE---FFVSS--KVLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred hCCEEEEEEECCCCCChhHHHHHHHhhCCCC--EEEEEECccCCCc--c-hh---hhhhh--cCCceEEEEEec-CCHHH
Confidence 4688999999876543110 1111233 5899999999754 2 22 22222 235789999997 68888
Q ss_pred HHHhhh
Q 032030 139 TLSITH 144 (148)
Q Consensus 139 l~~~~~ 144 (148)
+++.+.
T Consensus 351 ~~~~L~ 356 (442)
T TIGR00450 351 LVDLLT 356 (442)
T ss_pred HHHHHH
Confidence 876653
No 261
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.0054 Score=47.20 Aligned_cols=78 Identities=18% Similarity=0.085 Sum_probs=50.0
Q ss_pred cCceEEEEEeCCCCCCc---cc-------cCCCCcceeeEEEEecCCCCCchhhhH--HHHHHHHHhcCCCCcEEEEEec
Q 032030 64 LADYIIYIIDVSGGDKI---PR-------KGGPGITQADLLVINKTDLASAIGADL--AVMERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~---~~-------~~~~qi~~ADivViNK~DL~~~~~~~l--~~~~~~i~~~np~a~vi~tSa~ 131 (148)
.++.+|+|.|.+....+ +. ...+.++ -++|.||+|+.+. ... +..+++..+ ++-.++++||||
T Consensus 81 ~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~--~lLVGNK~Dl~~~--~~v~~~~a~~fa~~-~~~~~f~ETSAK 155 (205)
T KOG0084|consen 81 GAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVP--KLLVGNKCDLTEK--RVVSTEEAQEFADE-LGIPIFLETSAK 155 (205)
T ss_pred CCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCC--eEEEeeccccHhh--eecCHHHHHHHHHh-cCCcceeecccC
Confidence 35667888887654221 11 1112333 5999999999776 333 234444443 343449999999
Q ss_pred CCCCHHHHHHhhhhh
Q 032030 132 WVIGIIFTLSITHYI 146 (148)
Q Consensus 132 ~g~gi~~l~~~~~~~ 146 (148)
++.++++.|..++..
T Consensus 156 ~~~NVe~~F~~la~~ 170 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKE 170 (205)
T ss_pred CccCHHHHHHHHHHH
Confidence 999999999887653
No 262
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.27 E-value=0.019 Score=48.67 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=49.4
Q ss_pred CceEEEEEeCCCCCCcccc-C-C--CCcceeeEEEEecCCCCCchhhhHHHHHHHHHh----------------------
Q 032030 65 ADYIIYIIDVSGGDKIPRK-G-G--PGITQADLLVINKTDLASAIGADLAVMERDALR---------------------- 118 (148)
Q Consensus 65 ~d~~i~vvDa~~~~~~~~~-~-~--~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~---------------------- 118 (148)
.|+.+.+|-|..|.....+ + . -.+++-.+++++|+|+++. +.+..+.+.+.+
T Consensus 227 ~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~d--dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa 304 (527)
T COG5258 227 VDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPD--DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAA 304 (527)
T ss_pred cceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcH--HHHHHHHHHHHHHHHHhcccceeeeccchhHHhh
Confidence 4666666666665443111 1 0 1233348999999999987 655544333321
Q ss_pred ----cCC-CCcEEEEEecCCCCHHHHHHhhh
Q 032030 119 ----MRD-GGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 119 ----~np-~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.|. -+|||.||+.||.|++-|.+++.
T Consensus 305 ~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 305 KAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred hhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 122 36899999999999988877654
No 263
>PLN03126 Elongation factor Tu; Provisional
Probab=96.23 E-value=0.019 Score=49.67 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=51.3
Q ss_pred CCCEEEEecCCceee-ee-e-ccccCceEEEEEeCCCCCCccc------cCCCCcceee-EEEEecCCCCCchhhh-HH-
Q 032030 43 KADLLLCESGGDNLA-AN-F-SRELADYIIYIIDVSGGDKIPR------KGGPGITQAD-LLVINKTDLASAIGAD-LA- 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~-~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~AD-ivViNK~DL~~~~~~~-l~- 110 (148)
+..+.+|.+.|-... .+ . .-..+|..+.|+|+..+...+. .....++ - ++++||+|+.+. ++ .+
T Consensus 143 ~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~--~iIvvvNK~Dl~~~--~~~~~~ 218 (478)
T PLN03126 143 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP--NMVVFLNKQDQVDD--EELLEL 218 (478)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC--eEEEEEecccccCH--HHHHHH
Confidence 345677777774210 00 0 1135688999999987743211 0011222 2 568999999875 33 22
Q ss_pred ---HHHHHHHhc--C-CCCcEEEEEecCCC
Q 032030 111 ---VMERDALRM--R-DGGPFIFAQVGWVI 134 (148)
Q Consensus 111 ---~~~~~i~~~--n-p~a~vi~tSa~~g~ 134 (148)
++.+.++.. + .+.|++++||.+|.
T Consensus 219 i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 219 VELEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 344555543 2 26899999998874
No 264
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.0028 Score=48.61 Aligned_cols=48 Identities=21% Similarity=0.117 Sum_probs=37.4
Q ss_pred EEEEecCCCCCchhhhH--HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 93 LLVINKTDLASAIGADL--AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 93 ivViNK~DL~~~~~~~l--~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+++.||+||... .++ ++-+++.++ .......|||+|++|++|.|..++
T Consensus 115 mLiGNKsDL~~r--R~Vs~EEGeaFA~e--hgLifmETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 115 MLIGNKSDLEAR--REVSKEEGEAFARE--HGLIFMETSAKTAENVEEAFINTA 164 (216)
T ss_pred EEEcchhhhhcc--ccccHHHHHHHHHH--cCceeehhhhhhhhhHHHHHHHHH
Confidence 677899999876 433 456677775 556778999999999999986553
No 265
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.17 E-value=0.025 Score=45.43 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=57.2
Q ss_pred hcCCCEEEEecCCceee-ee--------------eccccCceEEEEEeCCCCCCccc---cCCCCcceeeEEEEecCCCC
Q 032030 41 LFKADLLLCESGGDNLA-AN--------------FSRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLA 102 (148)
Q Consensus 41 ~~~~D~IliEtsG~~~~-~~--------------~~~~~~d~~i~vvDa~~~~~~~~---~~~~qi~~ADivViNK~DL~ 102 (148)
..++|+|+|.|.|.... +. +.+...|..+.|+|+..+.+... .+...+ ..+-+++||.|..
T Consensus 152 ~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~-~~~g~IlTKlDe~ 230 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV-GLTGIILTKLDGT 230 (272)
T ss_pred HCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC-CCCEEEEEccCCC
Confidence 45899999999998631 00 11223677899999976643111 111111 2479999999998
Q ss_pred CchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHH
Q 032030 103 SAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 140 (148)
Q Consensus 103 ~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~ 140 (148)
...+.-+..... . +.|+..++ +|++++.|-
T Consensus 231 ~~~G~~l~~~~~----~--~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 231 AKGGIILSIAYE----L--KLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCccHHHHHHHH----H--CcCEEEEe--CCCChHhCc
Confidence 775544433332 1 47888888 578887764
No 266
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=95.87 E-value=0.0071 Score=45.00 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=50.1
Q ss_pred ceEEEEEeCCCCCCccc---cC------CCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCH
Q 032030 66 DYIIYIIDVSGGDKIPR---KG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 136 (148)
Q Consensus 66 d~~i~vvDa~~~~~~~~---~~------~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi 136 (148)
+.+++|.|.++++.+.. .+ -+.++ -++|.||.|+.+. ..+..-..+--+..-+.+.|.||||+.+++
T Consensus 82 hgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~--~vLVGNK~d~~~R--rvV~t~dAr~~A~~mgie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 82 HGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVP--KVLVGNKNDDPER--RVVDTEDARAFALQMGIELFETSAKENENV 157 (198)
T ss_pred ceEEEEEECcchhhhHhHHHHHHHHHhcCcccc--ceecccCCCCccc--eeeehHHHHHHHHhcCchheehhhhhcccc
Confidence 45688889988765321 11 12233 6999999999876 433322222233456678999999999999
Q ss_pred HHHHHhhh
Q 032030 137 IFTLSITH 144 (148)
Q Consensus 137 ~~l~~~~~ 144 (148)
++.|.-++
T Consensus 158 E~mF~cit 165 (198)
T KOG0079|consen 158 EAMFHCIT 165 (198)
T ss_pred hHHHHHHH
Confidence 99986554
No 267
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=95.84 E-value=0.018 Score=44.16 Aligned_cols=57 Identities=7% Similarity=-0.011 Sum_probs=40.3
Q ss_pred CCcceeeEEEEecCCCCCchh-h-hHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 86 PGITQADLLVINKTDLASAIG-A-DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 86 ~qi~~ADivViNK~DL~~~~~-~-~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
..+| =+|+.||+|+-+.-+ . ...+..++. +-+.+.|.|.||||.+.|+++-|...+.
T Consensus 117 e~FP--FVilGNKiD~~~~~~r~VS~~~Aq~WC-~s~gnipyfEtSAK~~~NV~~AFe~ia~ 175 (210)
T KOG0394|consen 117 ETFP--FVILGNKIDVDGGKSRQVSEKKAQTWC-KSKGNIPYFETSAKEATNVDEAFEEIAR 175 (210)
T ss_pred Cccc--EEEEcccccCCCCccceeeHHHHHHHH-HhcCCceeEEecccccccHHHHHHHHHH
Confidence 4566 489999999965200 1 112344444 4567899999999999999999887654
No 268
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=95.81 E-value=0.02 Score=45.87 Aligned_cols=88 Identities=10% Similarity=-0.034 Sum_probs=52.6
Q ss_pred CCCEEEEecCCceee--eee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCc-hhhhHHHH
Q 032030 43 KADLLLCESGGDNLA--ANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASA-IGADLAVM 112 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~-~~~~l~~~ 112 (148)
+..+.++.|.|.... ... .-..+|..++|+|+..+...+. ....+++ -++++||+|+.+. ....++.+
T Consensus 63 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p--~ivviNK~D~~~a~~~~~~~~l 140 (270)
T cd01886 63 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVP--RIAFVNKMDRTGADFFRVVEQI 140 (270)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCC--EEEEEECCCCCCCCHHHHHHHH
Confidence 567888999996421 000 1135688999999988754211 1122455 5899999999753 11123344
Q ss_pred HHHHHhcCCCCcEEEEEecCC
Q 032030 113 ERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 113 ~~~i~~~np~a~vi~tSa~~g 133 (148)
++.+. ..+...++|+|++.+
T Consensus 141 ~~~l~-~~~~~~~~Pisa~~~ 160 (270)
T cd01886 141 REKLG-ANPVPLQLPIGEEDD 160 (270)
T ss_pred HHHhC-CCceEEEeccccCCC
Confidence 44432 345567788988754
No 269
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=95.80 E-value=0.018 Score=44.05 Aligned_cols=77 Identities=19% Similarity=0.104 Sum_probs=47.5
Q ss_pred CceEEEEEeCCCCCC----------ccc-cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 032030 65 ADYIIYIIDVSGGDK----------IPR-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 65 ~d~~i~vvDa~~~~~----------~~~-~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
.|.++.|.+.....- +.. .-...+| -++|.||+||...=.-..+...+..+ ....+.+.+||+..
T Consensus 75 ~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~P--ivlVGNK~Dl~~~R~V~~eeg~~la~--~~~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 75 GDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVP--IILVGNKCDLERERQVSEEEGKALAR--SWGCAFIETSAKLN 150 (196)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCC--EEEEEEcccchhccccCHHHHHHHHH--hcCCcEEEeeccCC
Confidence 466677777655421 100 1112445 79999999998730012223333333 34456999999999
Q ss_pred CCHHHHHHhhhh
Q 032030 134 IGIIFTLSITHY 145 (148)
Q Consensus 134 ~gi~~l~~~~~~ 145 (148)
.+++++|..+..
T Consensus 151 ~~v~~~F~~L~r 162 (196)
T KOG0395|consen 151 YNVDEVFYELVR 162 (196)
T ss_pred cCHHHHHHHHHH
Confidence 999999987654
No 270
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=95.71 E-value=0.041 Score=43.15 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=37.2
Q ss_pred CCCEEEEecCCceeee-ee--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCC
Q 032030 43 KADLLLCESGGDNLAA-NF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLAS 103 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~-~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~ 103 (148)
+..+.++.|.|..... .. .-..+|..++|+|+..+...+. .....++ -++++||+|+..
T Consensus 63 ~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P--~iivvNK~D~~~ 130 (237)
T cd04168 63 DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIP--TIIFVNKIDRAG 130 (237)
T ss_pred CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC--EEEEEECccccC
Confidence 5678888898864310 00 1135688999999987743210 1122455 489999999874
No 271
>PRK12740 elongation factor G; Reviewed
Probab=95.71 E-value=0.029 Score=50.19 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=38.7
Q ss_pred CCCEEEEecCCceee--eee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNLA--ANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~ 104 (148)
++++.+|.|.|..-. ... .-..+|.++.++|+..+..... ....+++ -++|+||+|+...
T Consensus 59 ~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p--~iiv~NK~D~~~~ 127 (668)
T PRK12740 59 GHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP--RIIFVNKMDRAGA 127 (668)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCC--EEEEEECCCCCCC
Confidence 678999999996421 000 1135799999999987754211 1112344 6899999998753
No 272
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.05 Score=46.23 Aligned_cols=74 Identities=19% Similarity=0.125 Sum_probs=44.5
Q ss_pred cCceEEEEEeCCCCCCccc-cCCCC------------cceeeEEEEecCCCCCchhhhHHHHHHHH----H--hcCC-CC
Q 032030 64 LADYIIYIIDVSGGDKIPR-KGGPG------------ITQADLLVINKTDLASAIGADLAVMERDA----L--RMRD-GG 123 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~-~~~~q------------i~~ADivViNK~DL~~~~~~~l~~~~~~i----~--~~np-~a 123 (148)
-+|..|+|||+..++-=.. ...+| +. -=++++||.|+++.-.+..+++...+ + ..+| +.
T Consensus 108 qAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~-~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v 186 (428)
T COG5256 108 QADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIK-QLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDV 186 (428)
T ss_pred hccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCc-eEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCC
Confidence 3677899999987731000 00011 11 13889999999985223334333322 2 2344 47
Q ss_pred cEEEEEecCCCCHHH
Q 032030 124 PFIFAQVGWVIGIIF 138 (148)
Q Consensus 124 ~vi~tSa~~g~gi~~ 138 (148)
+++|+|+.+|.|+.+
T Consensus 187 ~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 187 PFIPISGFKGDNLTK 201 (428)
T ss_pred eEEecccccCCcccc
Confidence 899999999999854
No 273
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.024 Score=42.48 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=45.3
Q ss_pred EEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHH
Q 032030 68 IIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 137 (148)
Q Consensus 68 ~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~ 137 (148)
.+.|.|++..+.+.. ..++. .+.+++.||.||-.+ .++..++..--..-.+.-.+.|||+||++++
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~--R~VtflEAs~FaqEnel~flETSa~TGeNVE 160 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPE--REVTFLEASRFAQENELMFLETSALTGENVE 160 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChh--hhhhHHHHHhhhcccceeeeeecccccccHH
Confidence 377788876643211 11222 236788899999887 6666555443333345577889999999999
Q ss_pred HHH
Q 032030 138 FTL 140 (148)
Q Consensus 138 ~l~ 140 (148)
|-|
T Consensus 161 EaF 163 (214)
T KOG0086|consen 161 EAF 163 (214)
T ss_pred HHH
Confidence 876
No 274
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=95.41 E-value=0.025 Score=42.64 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=51.2
Q ss_pred cCceEEEEEeCCCCCCcc-------c-cCCCCcce-eeEEEEecCCCCCchhhhHHHHH--HHHHhc--CCCCcEEEEEe
Q 032030 64 LADYIIYIIDVSGGDKIP-------R-KGGPGITQ-ADLLVINKTDLASAIGADLAVME--RDALRM--RDGGPFIFAQV 130 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~-------~-~~~~qi~~-ADivViNK~DL~~~~~~~l~~~~--~~i~~~--np~a~vi~tSa 130 (148)
..|..|+|+|.......+ . ...+++.. +-+|+.||.|+.+. -..+.+. -.++++ -.+-+++.+||
T Consensus 83 stdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~~~~L~~l~ks~~~~l~~cs~ 160 (185)
T KOG0073|consen 83 STDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISKALDLEELAKSHHWRLVKCSA 160 (185)
T ss_pred ccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHHhhCHHHhccccCceEEEEec
Confidence 356679999986543211 1 12345555 46899999999876 3333433 223344 24569999999
Q ss_pred cCCCCHHHHHHhhh
Q 032030 131 GWVIGIIFTLSITH 144 (148)
Q Consensus 131 ~~g~gi~~l~~~~~ 144 (148)
.+|+++.+=++|+.
T Consensus 161 ~tge~l~~gidWL~ 174 (185)
T KOG0073|consen 161 VTGEDLLEGIDWLC 174 (185)
T ss_pred cccccHHHHHHHHH
Confidence 99999888777763
No 275
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=95.34 E-value=0.038 Score=41.76 Aligned_cols=100 Identities=12% Similarity=-0.013 Sum_probs=56.6
Q ss_pred CCCEEEEecCCceee----eee----ccccCceEEEEEeCCCCCCcc----c-cCCCCcceeeEEEEecCCCCCchh---
Q 032030 43 KADLLLCESGGDNLA----ANF----SRELADYIIYIIDVSGGDKIP----R-KGGPGITQADLLVINKTDLASAIG--- 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~----~~~----~~~~~d~~i~vvDa~~~~~~~----~-~~~~qi~~ADivViNK~DL~~~~~--- 106 (148)
.+++.+++|.|..-. ..+ .-...|.++++.+.. ..... . ......+ -++|+||+|+..+..
T Consensus 51 ~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~-~~~~d~~~~~~l~~~~~~--~ilV~nK~D~~~~~~~~~ 127 (197)
T cd04104 51 FPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTR-FSSNDVKLAKAIQCMGKK--FYFVRTKVDRDLSNEQRS 127 (197)
T ss_pred CCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCC-CCHHHHHHHHHHHHhCCC--EEEEEecccchhhhhhcc
Confidence 357889999997521 111 112357777765432 22110 0 0111223 489999999964300
Q ss_pred --------hhHHHHHHHHHhcC-----CCCcEEEEEec--CCCCHHHHHHhhhh
Q 032030 107 --------ADLAVMERDALRMR-----DGGPFIFAQVG--WVIGIIFTLSITHY 145 (148)
Q Consensus 107 --------~~l~~~~~~i~~~n-----p~a~vi~tSa~--~g~gi~~l~~~~~~ 145 (148)
.-++.+++.+.+.. +..+|+.+|+. ++.|+..|.+.+..
T Consensus 128 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~ 181 (197)
T cd04104 128 KPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLK 181 (197)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHH
Confidence 12334444444222 45699999998 57899999877653
No 276
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=95.33 E-value=0.09 Score=45.68 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=58.5
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccccC------CCCcceeeEEEEecCCCCCc-hhhhHHHH
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPRKG------GPGITQADLLVINKTDLASA-IGADLAVM 112 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~~~------~~qi~~ADivViNK~DL~~~-~~~~l~~~ 112 (148)
+.-+=+|.|.|-|.. -.. .-..+|-++.+|||.+|+.-+.++ ...++ -|+|+||+|..+. .+..++++
T Consensus 67 ~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~--PIVVvNKiDrp~Arp~~Vvd~v 144 (603)
T COG1217 67 GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLK--PIVVINKIDRPDARPDEVVDEV 144 (603)
T ss_pred CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCC--cEEEEeCCCCCCCCHHHHHHHH
Confidence 344456677775532 011 124678899999999997533221 11233 5999999999775 11223333
Q ss_pred HHHHHhcCC-----CCcEEEEEecCCC----------CHHHHHHhh
Q 032030 113 ERDALRMRD-----GGPFIFAQVGWVI----------GIIFTLSIT 143 (148)
Q Consensus 113 ~~~i~~~np-----~a~vi~tSa~~g~----------gi~~l~~~~ 143 (148)
-...-++.. +-|++..|++.|. ++..||+.+
T Consensus 145 fDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I 190 (603)
T COG1217 145 FDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETI 190 (603)
T ss_pred HHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHH
Confidence 333333332 3589999998753 466666654
No 277
>PRK00007 elongation factor G; Reviewed
Probab=95.30 E-value=0.025 Score=50.95 Aligned_cols=86 Identities=12% Similarity=-0.007 Sum_probs=52.8
Q ss_pred CCCEEEEecCCceee--eee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 43 KADLLLCESGGDNLA--ANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
+.-+.||.|.|.... ... .-..+|..++|+|+..+...+. .....++ -++++||+|+.++ . ..++.
T Consensus 74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p--~iv~vNK~D~~~~--~-~~~~~ 148 (693)
T PRK00007 74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVP--RIAFVNKMDRTGA--D-FYRVV 148 (693)
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCC--EEEEEECCCCCCC--C-HHHHH
Confidence 456788888885321 000 1135688999999988754221 1122455 5899999999875 3 44444
Q ss_pred HHHHhcC---CCCcEEEEEecCC
Q 032030 114 RDALRMR---DGGPFIFAQVGWV 133 (148)
Q Consensus 114 ~~i~~~n---p~a~vi~tSa~~g 133 (148)
+.+++.. +.+.++++|++++
T Consensus 149 ~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 149 EQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHHhCCCeeeEEecCccCCc
Confidence 4554333 3367788888776
No 278
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=95.29 E-value=0.059 Score=40.13 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=51.3
Q ss_pred cCceEEEEEeCCCCCCccc--------cCCC---CcceeeEEEEecCCCCCchhhhHHHHHHHHH--hcC-CCCcEEEEE
Q 032030 64 LADYIIYIIDVSGGDKIPR--------KGGP---GITQADLLVINKTDLASAIGADLAVMERDAL--RMR-DGGPFIFAQ 129 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~--------~~~~---qi~~ADivViNK~DL~~~~~~~l~~~~~~i~--~~n-p~a~vi~tS 129 (148)
.++.++++|||.+.+.+.. ...+ .+| -+|+.||.|+.++.+. ..+.+.+- .+. ...--|.+|
T Consensus 88 ~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip--~LVLGnK~d~~~AL~~--~~li~rmgL~sitdREvcC~siS 163 (186)
T KOG0075|consen 88 GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIP--LLVLGNKIDLPGALSK--IALIERMGLSSITDREVCCFSIS 163 (186)
T ss_pred cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCc--EEEecccccCcccccH--HHHHHHhCccccccceEEEEEEE
Confidence 4577899999988655322 1222 355 7899999999987333 34444332 221 223447899
Q ss_pred ecCCCCHHHHHHhhh
Q 032030 130 VGWVIGIIFTLSITH 144 (148)
Q Consensus 130 a~~g~gi~~l~~~~~ 144 (148)
+++..+++.+.+|+.
T Consensus 164 cke~~Nid~~~~Wli 178 (186)
T KOG0075|consen 164 CKEKVNIDITLDWLI 178 (186)
T ss_pred EcCCccHHHHHHHHH
Confidence 999999999999874
No 279
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=0.071 Score=43.94 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=41.3
Q ss_pred ceEEEEEeCCCCCCccc----cCCCCcce-eeEEEEecCCCCCchhhhH-HHHHHHHHh----c-CC--CCcEEEEEecC
Q 032030 66 DYIIYIIDVSGGDKIPR----KGGPGITQ-ADLLVINKTDLASAIGADL-AVMERDALR----M-RD--GGPFIFAQVGW 132 (148)
Q Consensus 66 d~~i~vvDa~~~~~~~~----~~~~qi~~-ADivViNK~DL~~~~~~~l-~~~~~~i~~----~-np--~a~vi~tSa~~ 132 (148)
|..|.||.|..|+.-+. ++..|.-. .-++++||+|+++. .++ +.++..+|+ . +| ..||+.-||++
T Consensus 100 DgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd--~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 100 DGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDD--EELLELVEMEVRELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred CccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCc--HHHHHHHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence 44599999988865322 22334332 35889999999985 444 444444443 2 24 67999999875
No 280
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.24 E-value=0.036 Score=43.20 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=36.9
Q ss_pred CCCEEEEecCCceeee-ee--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCC
Q 032030 43 KADLLLCESGGDNLAA-NF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLA 102 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~-~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~ 102 (148)
++-+.++.|.|..... .. .-..+|..+.|+|+..+...+. .....++ -++++||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p--~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK--PVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC--EEEEEECCCcc
Confidence 4556788888864310 00 1236788999999988754221 1122344 58999999986
No 281
>PRK13351 elongation factor G; Reviewed
Probab=95.23 E-value=0.059 Score=48.41 Aligned_cols=60 Identities=23% Similarity=0.230 Sum_probs=37.1
Q ss_pred CCCEEEEecCCceee-ee-e-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNLA-AN-F-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~-~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~ 104 (148)
+..+.++.|.|.... .. . .-..+|..++|+|+..+..... .....++ -++++||+|+...
T Consensus 72 ~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p--~iiviNK~D~~~~ 140 (687)
T PRK13351 72 NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIP--RLIFINKMDRVGA 140 (687)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC--EEEEEECCCCCCC
Confidence 456777888885321 00 0 1135788999999987754211 1122455 5899999998764
No 282
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.17 E-value=0.031 Score=46.25 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=40.3
Q ss_pred eEEEEecCCCCCchh--hhHHHHHHHHHhcC-CCCcEEEEEecCCCCHHHHHHhh
Q 032030 92 DLLVINKTDLASAIG--ADLAVMERDALRMR-DGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 92 DivViNK~DL~~~~~--~~l~~~~~~i~~~n-p~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
-+++-||+||..+-. ++.+.+.++++.-+ .++|++++||.-+.+++-+.+++
T Consensus 182 iiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyi 236 (466)
T KOG0466|consen 182 IIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYI 236 (466)
T ss_pred EEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHH
Confidence 367889999988611 23456778887544 67899999999999999998864
No 283
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=0.025 Score=42.06 Aligned_cols=51 Identities=20% Similarity=0.031 Sum_probs=39.0
Q ss_pred eEEEEecCCCCCchhhhH--HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 92 DLLVINKTDLASAIGADL--AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l--~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
.++|.||+|+-++ ..+ ++.+..+.++. -+.|.+|||.+.+++.+|+.+.-+
T Consensus 129 vilvgnKCDmd~e--Rvis~e~g~~l~~~LG--fefFEtSaK~NinVk~~Fe~lv~~ 181 (193)
T KOG0093|consen 129 VILVGNKCDMDSE--RVISHERGRQLADQLG--FEFFETSAKENINVKQVFERLVDI 181 (193)
T ss_pred EEEEecccCCccc--eeeeHHHHHHHHHHhC--hHHhhhcccccccHHHHHHHHHHH
Confidence 6899999999876 332 45556665443 488999999999999999887543
No 284
>COG1084 Predicted GTPase [General function prediction only]
Probab=94.96 E-value=0.037 Score=45.79 Aligned_cols=96 Identities=18% Similarity=0.090 Sum_probs=61.5
Q ss_pred CCEEEEecCCcee-e-ee--------e--ccccCceEEEEEeCCCCCCccc-----cC---CCCcceeeEEEEecCCCCC
Q 032030 44 ADLLLCESGGDNL-A-AN--------F--SRELADYIIYIIDVSGGDKIPR-----KG---GPGITQADLLVINKTDLAS 103 (148)
Q Consensus 44 ~D~IliEtsG~~~-~-~~--------~--~~~~~d~~i~vvDa~~~~~~~~-----~~---~~qi~~ADivViNK~DL~~ 103 (148)
+-|=+|.|.|+.. + +. . -.++.+.+++++|++..-.... ++ .+-+..--++|+||+|+++
T Consensus 215 ~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~ 294 (346)
T COG1084 215 LRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIAD 294 (346)
T ss_pred ceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccc
Confidence 3566889999853 1 00 0 1357888999999986533211 11 1123322689999999999
Q ss_pred chhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHh
Q 032030 104 AIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 142 (148)
Q Consensus 104 ~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~ 142 (148)
. +.+++++..+....-. .....++.++.+.+.+-..
T Consensus 295 ~--e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~ 330 (346)
T COG1084 295 E--EKLEEIEASVLEEGGE-EPLKISATKGCGLDKLREE 330 (346)
T ss_pred h--hHHHHHHHHHHhhccc-cccceeeeehhhHHHHHHH
Confidence 8 8888888776543322 2356677778888876544
No 285
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=94.90 E-value=0.054 Score=48.77 Aligned_cols=87 Identities=11% Similarity=0.055 Sum_probs=53.1
Q ss_pred CCCEEEEecCCceeee-ee--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 43 KADLLLCESGGDNLAA-NF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~-~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
+.-+.++.|.|..... .. .-...|..++|+|+..+...+. ....+++ -++++||+|+... . .+++.
T Consensus 74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p--~ivviNK~D~~~~--~-~~~~~ 148 (689)
T TIGR00484 74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVP--RIAFVNKMDKTGA--N-FLRVV 148 (689)
T ss_pred CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCC--EEEEEECCCCCCC--C-HHHHH
Confidence 4567888888875310 00 1135688999999987643211 1122455 5899999999865 3 34444
Q ss_pred HHHHhc---CCCCcEEEEEecCCC
Q 032030 114 RDALRM---RDGGPFIFAQVGWVI 134 (148)
Q Consensus 114 ~~i~~~---np~a~vi~tSa~~g~ 134 (148)
+.+++. ++...+++.|+++++
T Consensus 149 ~~i~~~l~~~~~~~~ipis~~~~~ 172 (689)
T TIGR00484 149 NQIKQRLGANAVPIQLPIGAEDNF 172 (689)
T ss_pred HHHHHHhCCCceeEEeccccCCCc
Confidence 444433 333457888887664
No 286
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=0.02 Score=42.71 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=36.1
Q ss_pred eEEEEecCCCCCchhhhHH-HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 92 DLLVINKTDLASAIGADLA-VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~-~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
-++|.||+|+.+. .++. ++-+...+. .+.-.+.|||++..+++.||..++
T Consensus 115 kilvgnk~d~~dr--revp~qigeefs~~-qdmyfletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 115 KILVGNKIDLADR--REVPQQIGEEFSEA-QDMYFLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred EEeeccccchhhh--hhhhHHHHHHHHHh-hhhhhhhhcccchhhHHHHHHHHH
Confidence 4999999999887 5543 333333332 344567899999999999997765
No 287
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=94.79 E-value=0.048 Score=41.25 Aligned_cols=49 Identities=22% Similarity=0.164 Sum_probs=36.8
Q ss_pred eEEEEecCCCCCchhhhH--HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 92 DLLVINKTDLASAIGADL--AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l--~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
=++|..|+||.+. .++ ++.++..+ .-+...+.|||++|.|+++-|..++
T Consensus 119 FlLVGhKsDL~Sq--RqVt~EEaEklAa--~hgM~FVETSak~g~NVeEAF~mla 169 (213)
T KOG0091|consen 119 FLLVGHKSDLQSQ--RQVTAEEAEKLAA--SHGMAFVETSAKNGCNVEEAFDMLA 169 (213)
T ss_pred EEEeccccchhhh--ccccHHHHHHHHH--hcCceEEEecccCCCcHHHHHHHHH
Confidence 3788999999887 544 23444443 4567899999999999999887665
No 288
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=94.77 E-value=0.13 Score=45.18 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=36.2
Q ss_pred CCCEEEEecCCceee-e-ee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCC
Q 032030 43 KADLLLCESGGDNLA-A-NF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLAS 103 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~-~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~ 103 (148)
+..+-++.|.|.... . +. .-..+|..++|+|+..+...+. .....++ -++++||+|+..
T Consensus 78 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP--iiv~iNK~D~~~ 145 (526)
T PRK00741 78 DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP--IFTFINKLDRDG 145 (526)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC--EEEEEECCcccc
Confidence 455777888885321 0 00 0125788999999987643210 0112455 699999999865
No 289
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=94.73 E-value=0.013 Score=44.91 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=39.9
Q ss_pred CcceeeEEEEecCCCCCchhhhHH--HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 87 GITQADLLVINKTDLASAIGADLA--VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 87 qi~~ADivViNK~DL~~~~~~~l~--~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.|| -++|-||+||++. .... .++...+.++ .+++++|+++..|+...|.+++
T Consensus 124 ~IP--tV~vqNKIDlved--s~~~~~evE~lak~l~--~RlyRtSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 124 RIP--TVFVQNKIDLVED--SQMDKGEVEGLAKKLH--KRLYRTSVKEDFNVMHVFAYLA 177 (246)
T ss_pred cCC--eEEeeccchhhHh--hhcchHHHHHHHHHhh--hhhhhhhhhhhhhhHHHHHHHH
Confidence 567 7999999999987 5443 3445555444 5779999999999999998875
No 290
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.68 E-value=0.036 Score=43.65 Aligned_cols=99 Identities=16% Similarity=0.087 Sum_probs=47.7
Q ss_pred CCCEEEEecCCcee-----------eeeeccccCceEEEEEeCCCCCCcccc-----------CCCCcceeeEEEEecCC
Q 032030 43 KADLLLCESGGDNL-----------AANFSRELADYIIYIIDVSGGDKIPRK-----------GGPGITQADLLVINKTD 100 (148)
Q Consensus 43 ~~D~IliEtsG~~~-----------~~~~~~~~~d~~i~vvDa~~~~~~~~~-----------~~~qi~~ADivViNK~D 100 (148)
+-+++++-|.|=.- ...+.....-..++++|+....+.... .+-.+| -+.|+||+|
T Consensus 90 ~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP--~vnvlsK~D 167 (238)
T PF03029_consen 90 EDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELP--HVNVLSKID 167 (238)
T ss_dssp H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSE--EEEEE--GG
T ss_pred CCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCC--EEEeeeccC
Confidence 34999999999421 011111122335999998765431110 011344 799999999
Q ss_pred CCCch-h---------hhH--------H----HHHHHHHhcCCCC-cEEEEEecCCCCHHHHHHhhh
Q 032030 101 LASAI-G---------ADL--------A----VMERDALRMRDGG-PFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 101 L~~~~-~---------~~l--------~----~~~~~i~~~np~a-~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.++. . ..+ . .+.+.+... ... ++++.|++++.|+++|+..+.
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~-~~~~~f~pls~~~~~~~~~L~~~id 233 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDF-GLVIRFIPLSSKDGEGMEELLAAID 233 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCC-SSS---EE-BTTTTTTHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhc-CCCceEEEEECCChHHHHHHHHHHH
Confidence 99820 0 000 1 222222222 334 899999999999999998764
No 291
>PRK12739 elongation factor G; Reviewed
Probab=94.62 E-value=0.057 Score=48.65 Aligned_cols=87 Identities=11% Similarity=-0.008 Sum_probs=52.5
Q ss_pred CCCEEEEecCCceee--eee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 43 KADLLLCESGGDNLA--ANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
+..+.++.|.|.... ... .-..+|..++|+|+..+...+. ....+++ -++++||+|+.+. . ...+.
T Consensus 72 ~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p--~iv~iNK~D~~~~--~-~~~~~ 146 (691)
T PRK12739 72 GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVP--RIVFVNKMDRIGA--D-FFRSV 146 (691)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC--EEEEEECCCCCCC--C-HHHHH
Confidence 456778888885311 111 1135688999999988754211 1123455 4899999999865 3 44444
Q ss_pred HHHHhcC---CCCcEEEEEecCCC
Q 032030 114 RDALRMR---DGGPFIFAQVGWVI 134 (148)
Q Consensus 114 ~~i~~~n---p~a~vi~tSa~~g~ 134 (148)
+.+++.. +...++++|+.+++
T Consensus 147 ~~i~~~l~~~~~~~~iPis~~~~f 170 (691)
T PRK12739 147 EQIKDRLGANAVPIQLPIGAEDDF 170 (691)
T ss_pred HHHHHHhCCCceeEEecccccccc
Confidence 5554433 33456778887654
No 292
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=94.56 E-value=0.018 Score=42.18 Aligned_cols=75 Identities=20% Similarity=0.121 Sum_probs=44.5
Q ss_pred cCceEEEEEeCCCCC---CccccCC-----CCcceeeEEEEecCCCCCchhhhH--HHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGD---KIPRKGG-----PGITQADLLVINKTDLASAIGADL--AVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~---~~~~~~~-----~qi~~ADivViNK~DL~~~~~~~l--~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
.+|..+.+.|..+.- ..+.... .+=..|-.++.||+|++.+ ..+ +.-++..++ -+.|+..|||+||
T Consensus 70 da~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e--r~v~~ddg~kla~~--y~ipfmetsaktg 145 (192)
T KOG0083|consen 70 DADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE--RAVKRDDGEKLAEA--YGIPFMETSAKTG 145 (192)
T ss_pred ccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchh--hccccchHHHHHHH--HCCCceecccccc
Confidence 467778888876542 2222111 1334446789999999874 211 122222222 2368899999999
Q ss_pred CCHHHHHHh
Q 032030 134 IGIIFTLSI 142 (148)
Q Consensus 134 ~gi~~l~~~ 142 (148)
.+++.-|-.
T Consensus 146 ~nvd~af~~ 154 (192)
T KOG0083|consen 146 FNVDLAFLA 154 (192)
T ss_pred ccHhHHHHH
Confidence 999865543
No 293
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=0.085 Score=39.81 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=34.2
Q ss_pred e-EEEEecCCCCCchhhhHH--HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 92 D-LLVINKTDLASAIGADLA--VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 92 D-ivViNK~DL~~~~~~~l~--~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
| ++..||+||.+. ..+. +..+..+ .-+.|.|.|||-+|.++++-++.+.
T Consensus 126 DivlcGNK~DL~~~--R~Vs~~qa~~La~--kyglPYfETSA~tg~Nv~kave~Ll 177 (219)
T KOG0081|consen 126 DIVLCGNKADLEDQ--RVVSEDQAAALAD--KYGLPYFETSACTGTNVEKAVELLL 177 (219)
T ss_pred CEEEEcCccchhhh--hhhhHHHHHHHHH--HhCCCeeeeccccCcCHHHHHHHHH
Confidence 5 556799999876 4432 2333333 2357999999999999998776553
No 294
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=0.19 Score=38.23 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=48.8
Q ss_pred CceEEEEEeCCCCCCccc-------c-CCCCccee-eEEEEecCCCCCchhhhHHHHHHHH--HhcCCC-CcEEEEEecC
Q 032030 65 ADYIIYIIDVSGGDKIPR-------K-GGPGITQA-DLLVINKTDLASAIGADLAVMERDA--LRMRDG-GPFIFAQVGW 132 (148)
Q Consensus 65 ~d~~i~vvDa~~~~~~~~-------~-~~~qi~~A-DivViNK~DL~~~~~~~l~~~~~~i--~~~np~-a~vi~tSa~~ 132 (148)
.+.+|+|||....+.+.. . ..+.+..| -++.-||-|+...+. ..++.+.+ +++.++ -.+..++|.+
T Consensus 85 t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~ 162 (181)
T KOG0070|consen 85 TQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAIS 162 (181)
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeeccccc
Confidence 355699999987654211 0 11122222 477889999987633 23333333 233333 3678899999
Q ss_pred CCCHHHHHHhhh
Q 032030 133 VIGIIFTLSITH 144 (148)
Q Consensus 133 g~gi~~l~~~~~ 144 (148)
|+|+.|-++|+.
T Consensus 163 G~GL~egl~wl~ 174 (181)
T KOG0070|consen 163 GEGLYEGLDWLS 174 (181)
T ss_pred cccHHHHHHHHH
Confidence 999999998874
No 295
>PRK09602 translation-associated GTPase; Reviewed
Probab=94.21 E-value=0.068 Score=45.21 Aligned_cols=41 Identities=15% Similarity=0.052 Sum_probs=29.6
Q ss_pred eEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHH
Q 032030 92 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~ 138 (148)
-++|+||+|+.+. .+ .+. .+.+. +..+++++||+.+.++++
T Consensus 220 vI~VlNK~D~~~~--~~--~l~-~i~~~-~~~~vvpISA~~e~~l~~ 260 (396)
T PRK09602 220 MVIAANKADLPPA--EE--NIE-RLKEE-KYYIVVPTSAEAELALRR 260 (396)
T ss_pred EEEEEEchhcccc--hH--HHH-HHHhc-CCCcEEEEcchhhhhHHH
Confidence 5799999998753 22 122 22222 677899999999999988
No 296
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=93.97 E-value=0.055 Score=42.83 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=51.9
Q ss_pred CCCEEEEecCCceee--eee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 43 KADLLLCESGGDNLA--ANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
+.++.++.|.|..-. ... .-..+|.+++|+|+..+..... .....++ -++++||+|+... ..+...
T Consensus 63 ~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p--~iivvNK~D~~~~---~~~~~~ 137 (268)
T cd04170 63 GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIP--RIIFINKMDRERA---DFDKTL 137 (268)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC--EEEEEECCccCCC---CHHHHH
Confidence 567888999986410 000 0135789999999988754211 0112344 6899999999865 334445
Q ss_pred HHHHhcCCCCcEEEEE--ecCCCCHHHH
Q 032030 114 RDALRMRDGGPFIFAQ--VGWVIGIIFT 139 (148)
Q Consensus 114 ~~i~~~np~a~vi~tS--a~~g~gi~~l 139 (148)
+.+++... .++++++ .++|.++..+
T Consensus 138 ~~l~~~~~-~~~~~~~ip~~~~~~~~~~ 164 (268)
T cd04170 138 AALQEAFG-RPVVPLQLPIGEGDDFKGV 164 (268)
T ss_pred HHHHHHhC-CCeEEEEecccCCCceeEE
Confidence 55554332 2344443 4555554433
No 297
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=93.86 E-value=0.11 Score=47.46 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=59.5
Q ss_pred CCCEEEEecCCceee---eeeccccCceEEEEEeCCCCCCcccc------CCCCcceeeEEEEecCCCCC----------
Q 032030 43 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPRK------GGPGITQADLLVINKTDLAS---------- 103 (148)
Q Consensus 43 ~~D~IliEtsG~~~~---~~~~~~~~d~~i~vvDa~~~~~~~~~------~~~qi~~ADivViNK~DL~~---------- 103 (148)
-|-.++|-|.|---. -+....+.|+.|.|||..+|.+.+.. .....+ =+|.+||+|+.=
T Consensus 539 vPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktp--FivALNKiDRLYgwk~~p~~~i 616 (1064)
T KOG1144|consen 539 VPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTP--FIVALNKIDRLYGWKSCPNAPI 616 (1064)
T ss_pred CCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCC--eEEeehhhhhhcccccCCCchH
Confidence 477899999994211 11223578999999999999654321 112345 378999999621
Q ss_pred -------------chhhhHHHHHHHHH--hcC-----------CCCcEEEEEecCCCCHHHHHHhh
Q 032030 104 -------------AIGADLAVMERDAL--RMR-----------DGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 104 -------------~~~~~l~~~~~~i~--~~n-----------p~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
+|...+..+.-.+. .+| ...-++||||.+|+|+..|+-++
T Consensus 617 ~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~ll 682 (1064)
T KOG1144|consen 617 VEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLL 682 (1064)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHH
Confidence 00011111111111 111 12467999999999999997655
No 298
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.23 E-value=0.1 Score=40.65 Aligned_cols=48 Identities=19% Similarity=0.023 Sum_probs=34.5
Q ss_pred eEEEEecCCCCCchhhh--HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 92 DLLVINKTDLASAIGAD--LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 92 DivViNK~DL~~~~~~~--l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
-.+|.||+||... .. .+......+ .....++.|||+.+.++++.|+.+
T Consensus 122 imLvGNK~DL~~l--raV~te~~k~~Ae--~~~l~f~EtSAl~~tNVe~aF~~~ 171 (222)
T KOG0087|consen 122 IMLVGNKSDLNHL--RAVPTEDGKAFAE--KEGLFFLETSALDATNVEKAFERV 171 (222)
T ss_pred EEEeecchhhhhc--cccchhhhHhHHH--hcCceEEEecccccccHHHHHHHH
Confidence 5889999999763 11 123333333 455788999999999999988655
No 299
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=93.01 E-value=0.15 Score=41.97 Aligned_cols=79 Identities=18% Similarity=0.068 Sum_probs=47.4
Q ss_pred ccCceEEEEEeCCCCCC-----ccccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEE-EEecCCCCH
Q 032030 63 ELADYIIYIIDVSGGDK-----IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF-AQVGWVIGI 136 (148)
Q Consensus 63 ~~~d~~i~vvDa~~~~~-----~~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~-tSa~~g~gi 136 (148)
...|.+|-|-||.-+.. ++...+..- -+||+||.||+++ .+...+.+.++..+-.-.++. ++.....++
T Consensus 45 ~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~---riiVlNK~DLad~--~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v 119 (335)
T KOG2485|consen 45 PLVDCIIEVRDARIPLSSRNELFQDFLPPKP---RIIVLNKMDLADP--KEQKKIIQYLEWQNLESYIKLDCNKDCNKQV 119 (335)
T ss_pred ccccEEEEeeccccCCccccHHHHHhcCCCc---eEEEEecccccCc--hhhhHHHHHHHhhcccchhhhhhhhhhhhcc
Confidence 36789999999865422 122222222 4999999999998 777788888776543332222 222223346
Q ss_pred HHHHHhhhhh
Q 032030 137 IFTLSITHYI 146 (148)
Q Consensus 137 ~~l~~~~~~~ 146 (148)
..++..+.++
T Consensus 120 ~~l~~il~~~ 129 (335)
T KOG2485|consen 120 SPLLKILTIL 129 (335)
T ss_pred ccHHHHHHHH
Confidence 6666555443
No 300
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=92.62 E-value=0.085 Score=36.94 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=18.3
Q ss_pred EEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEec
Q 032030 95 VINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 95 ViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~ 131 (148)
+.||+|+... .+.+++ +++..|+.+++++||.
T Consensus 1 AaNK~D~~~a-~~ni~k----l~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPAA-DENIEK----LKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S--HHHHHH----HHHHHTT-EEEEE-HH
T ss_pred CCcccccccc-HhHHHH----HHHhCCCCceeeccHH
Confidence 5799998433 144444 4444588999999996
No 301
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=0.21 Score=37.01 Aligned_cols=47 Identities=21% Similarity=0.081 Sum_probs=33.5
Q ss_pred eEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHH
Q 032030 92 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 140 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~ 140 (148)
-+++.||.||-++-+-..++..++.+ ..+.-++..||++|.+++.-|
T Consensus 119 i~lignkadle~qrdv~yeeak~fae--engl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 119 IFLIGNKADLESQRDVTYEEAKEFAE--ENGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred EEEecchhhhhhcccCcHHHHHHHHh--hcCeEEEEecccccCcHHHHH
Confidence 57889999997762222245555554 355678899999999998765
No 302
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.01 E-value=0.34 Score=35.86 Aligned_cols=75 Identities=19% Similarity=0.120 Sum_probs=48.4
Q ss_pred EEEEEeCCCCCCccc--------cCCCCcceee-EEEEecCCCCCchhhhHHHHHHHHH---hcCCCCcEEEEEecCCCC
Q 032030 68 IIYIIDVSGGDKIPR--------KGGPGITQAD-LLVINKTDLASAIGADLAVMERDAL---RMRDGGPFIFAQVGWVIG 135 (148)
Q Consensus 68 ~i~vvDa~~~~~~~~--------~~~~qi~~AD-ivViNK~DL~~~~~~~l~~~~~~i~---~~np~a~vi~tSa~~g~g 135 (148)
+|+|+|+...+++.. ...+++..+- +|+-||-|+.++ -.-.++..+++ ..+..=-+.+++|.+|.|
T Consensus 88 lIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdg 165 (180)
T KOG0071|consen 88 LIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDG 165 (180)
T ss_pred EEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchh
Confidence 499999877655311 1223555444 566799999887 44445554442 112223578999999999
Q ss_pred HHHHHHhhh
Q 032030 136 IIFTLSITH 144 (148)
Q Consensus 136 i~~l~~~~~ 144 (148)
+.+=+.|+.
T Consensus 166 L~eglswls 174 (180)
T KOG0071|consen 166 LKEGLSWLS 174 (180)
T ss_pred HHHHHHHHH
Confidence 988887763
No 303
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=90.83 E-value=0.41 Score=40.30 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=39.2
Q ss_pred EEEEEeCCCCCCccc----cCCCCcceee-EEEEecCCCC-CchhhhHHHHHHHHHhcC-------CCCcEEEEEec
Q 032030 68 IIYIIDVSGGDKIPR----KGGPGITQAD-LLVINKTDLA-SAIGADLAVMERDALRMR-------DGGPFIFAQVG 131 (148)
Q Consensus 68 ~i~vvDa~~~~~~~~----~~~~qi~~AD-ivViNK~DL~-~~~~~~l~~~~~~i~~~n-------p~a~vi~tSa~ 131 (148)
.|.||.+..|+.-+. ++..|+-.-+ ++.+||+|++ ++ +.++-++-.+|++. ...||+.-||+
T Consensus 144 aILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~--e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 144 AILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDP--EMLELVEMEIRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred eEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCH--HHHHHHHHHHHHHHHHcCCCCCCCCeeecchh
Confidence 488899988854321 1122332223 6779999999 55 66666665555432 45799998875
No 304
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.44 E-value=0.56 Score=34.30 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=39.4
Q ss_pred hcCCCEEEEecCCceee-----ee---ecc-ccCceEEEEEeCCCCCCccc---cCCCCcceeeEEEEecCCCCCc
Q 032030 41 LFKADLLLCESGGDNLA-----AN---FSR-ELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 41 ~~~~D~IliEtsG~~~~-----~~---~~~-~~~d~~i~vvDa~~~~~~~~---~~~~qi~~ADivViNK~DL~~~ 104 (148)
..++|+|+|++.|.... .. +.+ ...+..++|+|+....+... .+..+.. .+.+++||.|....
T Consensus 80 ~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~-~~~viltk~D~~~~ 154 (173)
T cd03115 80 EENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALG-ITGVILTKLDGDAR 154 (173)
T ss_pred hCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCC-CCEEEEECCcCCCC
Confidence 45899999999998521 11 111 12577799999865433211 1111223 47999999998876
No 305
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.11 E-value=1.4 Score=37.84 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=52.1
Q ss_pred cCCCEEEEecCCceee-----eee----ccccCceEEEEEeCCCCCCc---cccCCCCcceeeEEEEecCCCCCchhhhH
Q 032030 42 FKADLLLCESGGDNLA-----ANF----SRELADYIIYIIDVSGGDKI---PRKGGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~-----~~~----~~~~~d~~i~vvDa~~~~~~---~~~~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
.++|+|||.|.|-... ..+ .....+.+++|+|+..+.+. ...+...+ .-+-+++||.|.....+.-+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~-~~~g~IlTKlD~~argG~aL 259 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSV-DVGSVIITKLDGHAKGGGAL 259 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhcc-CCcEEEEECccCCCCccHHh
Confidence 4899999999997532 111 01123567999999877432 11121111 12689999999876533332
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
.. ... -+.||.+++ +|+.++.+
T Consensus 260 s~----~~~--t~~PI~fig--~Ge~v~Dl 281 (429)
T TIGR01425 260 SA----VAA--TKSPIIFIG--TGEHIDDF 281 (429)
T ss_pred hh----HHH--HCCCeEEEc--CCCChhhc
Confidence 22 221 346777777 46777665
No 306
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=90.02 E-value=2.7 Score=34.70 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=40.1
Q ss_pred HHHHhhhhcCCCEEEEecCCceeeeee-c-cccCceEEEEEeCCCCCC----ccc-cC---CCCcceeeEEEEecCCCCC
Q 032030 34 PLEELSNLFKADLLLCESGGDNLAANF-S-RELADYIIYIIDVSGGDK----IPR-KG---GPGITQADLLVINKTDLAS 103 (148)
Q Consensus 34 al~~l~~~~~~D~IliEtsG~~~~~~~-~-~~~~d~~i~vvDa~~~~~----~~~-~~---~~qi~~ADivViNK~DL~~ 103 (148)
+...+.++.++|+|+.. .-| + ....|+-|+++|+.++.. +|. .+ ...+..||++++||.+...
T Consensus 119 ~~~~~~~~~~~dviilD-------DGfQh~~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~rAD~vi~~~~~~~~ 191 (326)
T PF02606_consen 119 AARAALKEFPADVIILD-------DGFQHRRLKRDLDIVLVDADRPFGNGFLLPAGPLREPLSALKRADAVIVTGCDASD 191 (326)
T ss_pred HHHHHHHHCCCCEEEEc-------CCcccccccCCcEEEEEeCCCCCcCCccCCCCcccCChhHhCcccEEEEcCCCcch
Confidence 44445555568877732 112 1 123577799999866532 233 11 2379999999999999865
Q ss_pred c
Q 032030 104 A 104 (148)
Q Consensus 104 ~ 104 (148)
.
T Consensus 192 ~ 192 (326)
T PF02606_consen 192 P 192 (326)
T ss_pred h
Confidence 5
No 307
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=89.51 E-value=0.23 Score=37.59 Aligned_cols=51 Identities=20% Similarity=-0.014 Sum_probs=35.8
Q ss_pred eEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 92 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
-.+|.||+|.-++-.-..++-.++.|+ ..+-++.+||++.+|+..-|+.+.
T Consensus 120 kmlVgNKiDkes~R~V~reEG~kfAr~--h~~LFiE~SAkt~~~V~~~Feelv 170 (209)
T KOG0080|consen 120 KMLVGNKIDKESERVVDREEGLKFARK--HRCLFIECSAKTRENVQCCFEELV 170 (209)
T ss_pred HhhhcccccchhcccccHHHHHHHHHh--hCcEEEEcchhhhccHHHHHHHHH
Confidence 489999999765411223345556664 446889999999999988887653
No 308
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=89.05 E-value=0.63 Score=40.61 Aligned_cols=82 Identities=23% Similarity=0.137 Sum_probs=46.2
Q ss_pred cCceEEEEEeCCCCCC---cc--ccC-----------CCCcceeeEEEEecCCCCCchhhhHHH-HHHHHH-hcCCCCcE
Q 032030 64 LADYIIYIIDVSGGDK---IP--RKG-----------GPGITQADLLVINKTDLASAIGADLAV-MERDAL-RMRDGGPF 125 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~---~~--~~~-----------~~qi~~ADivViNK~DL~~~~~~~l~~-~~~~i~-~~np~a~v 125 (148)
.+|++++|+||.+.+. .. ... +..-..=-+++.||+|+.++... ... ...+.. ...+.-++
T Consensus 348 ~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~-~~~~~~~~~~~~~~~~~~i 426 (531)
T KOG1191|consen 348 RADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE-MTKIPVVYPSAEGRSVFPI 426 (531)
T ss_pred hcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccc-ccCCceeccccccCcccce
Confidence 4689999999955421 10 000 00111124899999999876111 111 001111 22234444
Q ss_pred EE-EEecCCCCHHHHHHhhhhh
Q 032030 126 IF-AQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 126 i~-tSa~~g~gi~~l~~~~~~~ 146 (148)
+. +|++|++|++.|.+.+.=+
T Consensus 427 ~~~vs~~tkeg~~~L~~all~~ 448 (531)
T KOG1191|consen 427 VVEVSCTTKEGCERLSTALLNI 448 (531)
T ss_pred EEEeeechhhhHHHHHHHHHHH
Confidence 44 9999999999998776533
No 309
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.01 E-value=2.3 Score=33.47 Aligned_cols=20 Identities=20% Similarity=-0.195 Sum_probs=15.9
Q ss_pred cEEEEEecCCCCHHHHHHhhh
Q 032030 124 PFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 124 ~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+.++|+++| ++++|-+|+.
T Consensus 216 ~F~e~S~~~~-~i~~~~~wi~ 235 (238)
T KOG0090|consen 216 TFAEASAKTG-EIDQWESWIR 235 (238)
T ss_pred EEeecccCcC-ChHHHHHHHH
Confidence 4677888866 8999998875
No 310
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=88.78 E-value=1.5 Score=37.70 Aligned_cols=75 Identities=16% Similarity=0.086 Sum_probs=42.1
Q ss_pred CceEEEEEeCCCCCCcc-----ccCCCCccee-eEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHH
Q 032030 65 ADYIIYIIDVSGGDKIP-----RKGGPGITQA-DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 65 ~d~~i~vvDa~~~~~~~-----~~~~~qi~~A-DivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~ 138 (148)
.|++|-|+||..+.... ..+...-++- =+.|+||+||++- -...+-...+.+..|...++ .|-...+|=..
T Consensus 214 SDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPt--wvt~~Wv~~lSkeyPTiAfH-Asi~nsfGKga 290 (572)
T KOG2423|consen 214 SDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPT--WVTAKWVRHLSKEYPTIAFH-ASINNSFGKGA 290 (572)
T ss_pred cceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccH--HHHHHHHHHHhhhCcceeee-hhhcCccchhH
Confidence 58889999998765421 0011111111 3889999999986 44444455555666655432 33344555555
Q ss_pred HHHh
Q 032030 139 TLSI 142 (148)
Q Consensus 139 l~~~ 142 (148)
|++.
T Consensus 291 lI~l 294 (572)
T KOG2423|consen 291 LIQL 294 (572)
T ss_pred HHHH
Confidence 5443
No 311
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=87.91 E-value=0.75 Score=34.91 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=35.5
Q ss_pred CCCEEEEecCCceee----eeeccccCceEEEEEeCCCCC-Cccc-------------cCCCCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNLA----ANFSRELADYIIYIIDVSGGD-KIPR-------------KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~----~~~~~~~~d~~i~vvDa~~~~-~~~~-------------~~~~qi~~ADivViNK~DL~~~ 104 (148)
+..+-++.+.|..-. ....+...+.+|+|+|+.... .... ...+.++ -+++.||.|+...
T Consensus 47 ~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~p--vliv~NK~Dl~~a 124 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIP--VLIACNKQDLFTA 124 (203)
T ss_pred CceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCC--EEEEecchhhccc
Confidence 456778888885311 111111238899999998762 2100 1113444 6899999998764
No 312
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=87.64 E-value=0.34 Score=38.56 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=43.3
Q ss_pred cCCCeeeeeccchhhchHHHHHhhhhcCCCEEEEecC-Cceeeeeec---cccCceEEEEEeCCCCC-Cccc---cCCCC
Q 032030 16 TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESG-GDNLAANFS---RELADYIIYIIDVSGGD-KIPR---KGGPG 87 (148)
Q Consensus 16 ~nGcicc~i~~dl~~~~~al~~l~~~~~~D~IliEts-G~~~~~~~~---~~~~d~~i~vvDa~~~~-~~~~---~~~~q 87 (148)
..||-|- ....++.+.+-+.....|+|++.|= |+ ..|. ...+|.++.|+|++.-. .+.. .....
T Consensus 111 GeGC~Cp-----~~allR~~l~~l~~~~~e~VivDtEAGi---EHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~e 182 (255)
T COG3640 111 GEGCACP-----MNALLRRLLRHLILNRYEVVIVDTEAGI---EHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEE 182 (255)
T ss_pred CCcccch-----HHHHHHHHHHHHhcccCcEEEEecccch---hhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 5689884 1111333333233346999998873 32 2332 25789999999986531 1111 01111
Q ss_pred cc-eeeEEEEecCCCC
Q 032030 88 IT-QADLLVINKTDLA 102 (148)
Q Consensus 88 i~-~ADivViNK~DL~ 102 (148)
+. .=-.+|+||+|--
T Consensus 183 lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 183 LGIKRIFVVLNKVDEE 198 (255)
T ss_pred hCCceEEEEEeeccch
Confidence 11 1147999999954
No 313
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=87.27 E-value=1.6 Score=32.83 Aligned_cols=76 Identities=14% Similarity=0.057 Sum_probs=48.5
Q ss_pred cCceEEEEEeCCCCCCccc---------cCCCCcceeeEEEEecCCCCCchhhhHH--HHHHHHHhcCCCCcEEEEEecC
Q 032030 64 LADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA--VMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~---------~~~~qi~~ADivViNK~DL~~~~~~~l~--~~~~~i~~~np~a~vi~tSa~~ 132 (148)
.+|.++.|.++...+.++. +....-+..-+++-||.|+..+ .+.. ....+.+ ....+.+.++|..
T Consensus 84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p--~~vd~d~A~~Wa~--rEkvkl~eVta~d 159 (198)
T KOG3883|consen 84 FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP--REVDMDVAQIWAK--REKVKLWEVTAMD 159 (198)
T ss_pred cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc--hhcCHHHHHHHHh--hhheeEEEEEecc
Confidence 5688889888876643211 2234556668999999999887 5443 3333333 4557889999987
Q ss_pred CCCHHHHHHhh
Q 032030 133 VIGIIFTLSIT 143 (148)
Q Consensus 133 g~gi~~l~~~~ 143 (148)
...+-+-|-++
T Consensus 160 R~sL~epf~~l 170 (198)
T KOG3883|consen 160 RPSLYEPFTYL 170 (198)
T ss_pred chhhhhHHHHH
Confidence 66655544433
No 314
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=87.26 E-value=5.8 Score=31.26 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=24.0
Q ss_pred HHHHhhhhcCCCEEEEecCCcee-----eee---eccccCceEEEEEeC
Q 032030 34 PLEELSNLFKADLLLCESGGDNL-----AAN---FSRELADYIIYIIDV 74 (148)
Q Consensus 34 al~~l~~~~~~D~IliEtsG~~~-----~~~---~~~~~~d~~i~vvDa 74 (148)
.+.++.+...+|+||||+=|.-- ++. ..|...+.+|.|+..
T Consensus 88 ~l~~l~~~~~~D~vLVEADGAk~~PlKaP~~~EPVIP~~t~~VI~V~gl 136 (232)
T TIGR03172 88 TVDDLSDFQHFDVILVEADGAKCRPLKAPSDHEPVIPKSSTTVIGVAGI 136 (232)
T ss_pred HHHHHHhccCCCEEEEECCCcCCCcccCCCCCCCccCCCCCEEEEEeCH
Confidence 34444433347999999999731 111 124456777776654
No 315
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=87.25 E-value=1.6 Score=38.31 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=36.8
Q ss_pred CCCEEEEecCCceee-e-ee-ccccCceEEEEEeCCCCCCcc--c----cCCCCcceeeEEEEecCCCCC
Q 032030 43 KADLLLCESGGDNLA-A-NF-SRELADYIIYIIDVSGGDKIP--R----KGGPGITQADLLVINKTDLAS 103 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~-~~-~~~~~d~~i~vvDa~~~~~~~--~----~~~~qi~~ADivViNK~DL~~ 103 (148)
+..+.++.|.|.... . .. .-..+|..++|+|+..+...+ . .....++ -++++||+|+..
T Consensus 79 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P--iivviNKiD~~~ 146 (527)
T TIGR00503 79 DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP--IFTFMNKLDRDI 146 (527)
T ss_pred CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC--EEEEEECccccC
Confidence 567778888886311 1 00 013578999999998764311 0 0112345 689999999964
No 316
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.11 E-value=2.6 Score=33.93 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=54.4
Q ss_pred HHHHHhhhhcCCCEEEEecCCceee--e------ee-ccccCceEEEEEeCCCCC-Cc---cccCCCCcceeeEEEEecC
Q 032030 33 GPLEELSNLFKADLLLCESGGDNLA--A------NF-SRELADYIIYIIDVSGGD-KI---PRKGGPGITQADLLVINKT 99 (148)
Q Consensus 33 ~al~~l~~~~~~D~IliEtsG~~~~--~------~~-~~~~~d~~i~vvDa~~~~-~~---~~~~~~qi~~ADivViNK~ 99 (148)
+++.++....++|+|+|.|.|-... . .+ .....+..+.|+|+.... +. ...+.. -.-|-++++|.
T Consensus 144 ~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~--~~~~~~I~TKl 221 (270)
T PRK06731 144 RALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD--IHIDGIVFTKF 221 (270)
T ss_pred HHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC--CCCCEEEEEee
Confidence 3444443334799999999997631 0 11 111234568889986543 22 112222 22379999999
Q ss_pred CCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHH
Q 032030 100 DLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 137 (148)
Q Consensus 100 DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~ 137 (148)
|-....+.-+. ...+ -+.|+..++- |+++.
T Consensus 222 Det~~~G~~l~----~~~~--~~~Pi~~it~--Gq~vp 251 (270)
T PRK06731 222 DETASSGELLK----IPAV--SSAPIVLMTD--GQDVK 251 (270)
T ss_pred cCCCCccHHHH----HHHH--HCcCEEEEeC--CCCCC
Confidence 98876444322 2222 3468888774 56654
No 317
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=87.06 E-value=2.2 Score=34.05 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=37.8
Q ss_pred CCCEEEEecCCceee--eee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNLA--ANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~ 104 (148)
+..+.++.|.|.... ... .-..+|..++|+|+..+..... ....+++ -++++||+|+...
T Consensus 70 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P--~iivvNK~D~~~a 138 (267)
T cd04169 70 DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP--IITFINKLDREGR 138 (267)
T ss_pred CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC--EEEEEECCccCCC
Confidence 577888899996421 011 0124788999999987643211 0112455 6899999998765
No 318
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.00 E-value=2.8 Score=36.00 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=60.4
Q ss_pred cCCCeeeeeccchhhchHHHHHhhhhcCCCEEEEecCCceee---------eeeccccCceEEEEEeCCCCC-Cc---cc
Q 032030 16 TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA---------ANFSRELADYIIYIIDVSGGD-KI---PR 82 (148)
Q Consensus 16 ~nGcicc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~~~~---------~~~~~~~~d~~i~vvDa~~~~-~~---~~ 82 (148)
..|++....++.. ....++..+....++|+|||.|.|...- ..+....-+.++.|+|+.... +. ..
T Consensus 294 ~lgipv~v~~d~~-~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 294 TIGFEVIAVRDEA-AMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred hcCCcEEecCCHH-HHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 4577765554322 2234454443333799999999998531 111111234567778886442 21 11
Q ss_pred cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHH
Q 032030 83 KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 137 (148)
Q Consensus 83 ~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~ 137 (148)
.+.. -.-|-++++|.|-....+.-+ ..... -+.|+..++. |+++.
T Consensus 373 ~F~~--~~idglI~TKLDET~k~G~iL----ni~~~--~~lPIsyit~--GQ~VP 417 (436)
T PRK11889 373 NFKD--IHIDGIVFTKFDETASSGELL----KIPAV--SSAPIVLMTD--GQDVK 417 (436)
T ss_pred HhcC--CCCCEEEEEcccCCCCccHHH----HHHHH--HCcCEEEEeC--CCCCC
Confidence 1221 123799999999887644432 23332 2467777774 56554
No 319
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=86.89 E-value=1.5 Score=36.78 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=40.5
Q ss_pred eEEEEecCCCCCc-------hhhhHHHHHHHHHhc--CCCCcEEEEEecCCCCHHHHHHhh
Q 032030 92 DLLVINKTDLASA-------IGADLAVMERDALRM--RDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 92 DivViNK~DL~~~-------~~~~l~~~~~~i~~~--np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
-+||++|+|.++- -++..+.+...+|+. .-++..+.||+|+..|++-|..++
T Consensus 225 vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYi 285 (473)
T KOG3905|consen 225 VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYI 285 (473)
T ss_pred EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHH
Confidence 7899999998552 225666788888754 367899999999999999887654
No 320
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=86.25 E-value=1.7 Score=37.34 Aligned_cols=91 Identities=18% Similarity=0.114 Sum_probs=50.7
Q ss_pred hhcCCCEEEEecCCceee-----e---eecc-ccCceEEEEEeCCCCCCcc---ccCCCCcceeeEEEEecCCCCCchhh
Q 032030 40 NLFKADLLLCESGGDNLA-----A---NFSR-ELADYIIYIIDVSGGDKIP---RKGGPGITQADLLVINKTDLASAIGA 107 (148)
Q Consensus 40 ~~~~~D~IliEtsG~~~~-----~---~~~~-~~~d~~i~vvDa~~~~~~~---~~~~~qi~~ADivViNK~DL~~~~~~ 107 (148)
...++|+|+|.|.|.... . .+.. ...+.+++|+|+..+.+.. ..+...+. -+-+++||.|-....+.
T Consensus 179 ~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~-i~giIlTKlD~~~~~G~ 257 (428)
T TIGR00959 179 KENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG-LTGVVLTKLDGDARGGA 257 (428)
T ss_pred HhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCC-CCEEEEeCccCcccccH
Confidence 345799999999996421 1 1111 1235678999987664321 11112222 25888999996554222
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 108 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 108 ~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
+....... +.||.+++. |+.++.+
T Consensus 258 ----~lsi~~~~--~~PI~fi~~--Ge~i~dl 281 (428)
T TIGR00959 258 ----ALSVRSVT--GKPIKFIGV--GEKIDDL 281 (428)
T ss_pred ----HHHHHHHH--CcCEEEEeC--CCChhhC
Confidence 33333332 267777764 5656544
No 321
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=86.24 E-value=0.59 Score=41.08 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=52.9
Q ss_pred CEEEEecCCcee-e---------eee--ccccCceEEEEEeCCCCCCc-----cccCCC---Cc-ceeeEEEEecCCCCC
Q 032030 45 DLLLCESGGDNL-A---------ANF--SRELADYIIYIIDVSGGDKI-----PRKGGP---GI-TQADLLVINKTDLAS 103 (148)
Q Consensus 45 D~IliEtsG~~~-~---------~~~--~~~~~d~~i~vvDa~~~~~~-----~~~~~~---qi-~~ADivViNK~DL~~ 103 (148)
-|-+|.|.|+.. + .++ ..++.-.+++++|-++--.. ..++.. -| ..--++|+||+|+..
T Consensus 216 rwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~ 295 (620)
T KOG1490|consen 216 RWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMR 295 (620)
T ss_pred eeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccC
Confidence 467788888752 1 000 11333446888887653221 011111 11 111599999999987
Q ss_pred chhhhHH----HHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 104 AIGADLA----VMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 104 ~~~~~l~----~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
+ +++. ++.+.+.+ -+..+|+.+|..+.+|+-++
T Consensus 296 ~--edL~~~~~~ll~~~~~-~~~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 296 P--EDLDQKNQELLQTIID-DGNVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred c--cccCHHHHHHHHHHHh-ccCceEEEecccchhceeeH
Confidence 7 5443 34444432 24479999999999998654
No 322
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=86.16 E-value=0.97 Score=40.11 Aligned_cols=74 Identities=20% Similarity=0.103 Sum_probs=42.8
Q ss_pred CceEEEEEeCCCCCCccc-cCCCCc-----------ceeeEEEEecCCCCCchhhhHHH----HHHHHHhcC----CCCc
Q 032030 65 ADYIIYIIDVSGGDKIPR-KGGPGI-----------TQADLLVINKTDLASAIGADLAV----MERDALRMR----DGGP 124 (148)
Q Consensus 65 ~d~~i~vvDa~~~~~~~~-~~~~qi-----------~~ADivViNK~DL~~~~~~~l~~----~~~~i~~~n----p~a~ 124 (148)
+|..+.|||+..+.--.. ...+|. -.-=+|++||.|+++--....+. +..++++.. +...
T Consensus 279 aD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~ 358 (603)
T KOG0458|consen 279 ADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVK 358 (603)
T ss_pred cceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcc
Confidence 577789999876521000 011111 01147899999999852233333 334442211 4458
Q ss_pred EEEEEecCCCCHHH
Q 032030 125 FIFAQVGWVIGIIF 138 (148)
Q Consensus 125 vi~tSa~~g~gi~~ 138 (148)
.+|+|+.+|+|+-.
T Consensus 359 FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 359 FIPISGLSGENLIK 372 (603)
T ss_pred eEecccccCCcccc
Confidence 99999999999853
No 323
>PRK10867 signal recognition particle protein; Provisional
Probab=85.98 E-value=1.8 Score=37.18 Aligned_cols=114 Identities=15% Similarity=0.065 Sum_probs=58.6
Q ss_pred CCCeeeeec--cchhhchHHHHHhhhhcCCCEEEEecCCceee-e-------eecc-ccCceEEEEEeCCCCCCcc---c
Q 032030 17 GGCPHAAIR--EDISINLGPLEELSNLFKADLLLCESGGDNLA-A-------NFSR-ELADYIIYIIDVSGGDKIP---R 82 (148)
Q Consensus 17 nGcicc~i~--~dl~~~~~al~~l~~~~~~D~IliEtsG~~~~-~-------~~~~-~~~d~~i~vvDa~~~~~~~---~ 82 (148)
.|.+..... .+.........+.....++|+|+|.|.|.... . .+.. ...+.+++|+|+..+.+.. .
T Consensus 155 ~gv~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~ 234 (433)
T PRK10867 155 IGVPVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAK 234 (433)
T ss_pred cCCeEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHH
Confidence 455544432 23333222222333445799999999996421 1 1110 1124568999987653321 1
Q ss_pred cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 83 KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 83 ~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
.+...++ -+-+|+||.|-....+. +....... +.||.+++. |++++.|
T Consensus 235 ~F~~~~~-i~giIlTKlD~~~rgG~----alsi~~~~--~~PI~fig~--Ge~v~DL 282 (433)
T PRK10867 235 AFNEALG-LTGVILTKLDGDARGGA----ALSIRAVT--GKPIKFIGT--GEKLDDL 282 (433)
T ss_pred HHHhhCC-CCEEEEeCccCcccccH----HHHHHHHH--CcCEEEEeC--CCccccC
Confidence 1112222 25789999997554222 22223322 367777764 5665544
No 324
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=84.94 E-value=2.4 Score=36.38 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=45.9
Q ss_pred ceEEEEEeCCCCCCccc-c-----CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHh---------------------
Q 032030 66 DYIIYIIDVSGGDKIPR-K-----GGPGITQADLLVINKTDLASAIGADLAVMERDALR--------------------- 118 (148)
Q Consensus 66 d~~i~vvDa~~~~~~~~-~-----~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~--------------------- 118 (148)
|+...||.|..|-.+.. . ..-.+| =+++++|+||.++ ..+++..+.+..
T Consensus 276 h~A~LvVsA~~Gi~~tTrEHLgl~~AL~iP--fFvlvtK~Dl~~~--~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv 351 (591)
T KOG1143|consen 276 HFACLVVSADRGITWTTREHLGLIAALNIP--FFVLVTKMDLVDR--QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAV 351 (591)
T ss_pred ceEEEEEEcCCCCccccHHHHHHHHHhCCC--eEEEEEeeccccc--hhHHHHHHHHHHHHhhcCccccceEeechHHHH
Confidence 44577777776643311 1 111345 4899999999987 444433322211
Q ss_pred -----c-CC-CCcEEEEEecCCCCHHHHHHhhhhhc
Q 032030 119 -----M-RD-GGPFIFAQVGWVIGIIFTLSITHYIV 147 (148)
Q Consensus 119 -----~-np-~a~vi~tSa~~g~gi~~l~~~~~~~~ 147 (148)
. -+ -.|||.+|..+|+|+.-| ..+.|+.
T Consensus 352 ~Aaq~~~s~nivPif~vSsVsGegl~ll-~~fLn~L 386 (591)
T KOG1143|consen 352 KAAQELCSGNIVPIFAVSSVSGEGLRLL-RTFLNCL 386 (591)
T ss_pred HHHHHhccCCceeEEEEeecCccchhHH-HHHHhhc
Confidence 1 12 258999999999999754 4444443
No 325
>PRK07560 elongation factor EF-2; Reviewed
Probab=84.29 E-value=2.5 Score=38.47 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=35.4
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCC
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLA 102 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~ 102 (148)
+-+.||.|.|.... ... .-..+|..++|+|+..+...+. .....++ -++++||+|+.
T Consensus 87 ~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~--~iv~iNK~D~~ 152 (731)
T PRK07560 87 YLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVK--PVLFINKVDRL 152 (731)
T ss_pred EEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCC--eEEEEECchhh
Confidence 44678888886431 111 1135788999999988754211 0112345 38999999986
No 326
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=84.25 E-value=1.2 Score=41.19 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=26.7
Q ss_pred cCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCC
Q 032030 64 LADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLA 102 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~ 102 (148)
.+|..+.|+|+..|...+. ....+++ -++++||+|+.
T Consensus 121 ~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p--~i~~iNK~D~~ 163 (843)
T PLN00116 121 ITDGALVVVDCIEGVCVQTETVLRQALGERIR--PVLTVNKMDRC 163 (843)
T ss_pred hcCEEEEEEECCCCCcccHHHHHHHHHHCCCC--EEEEEECCccc
Confidence 5688899999998854321 1123455 59999999998
No 327
>PTZ00416 elongation factor 2; Provisional
Probab=81.64 E-value=2 Score=39.75 Aligned_cols=57 Identities=23% Similarity=0.162 Sum_probs=36.6
Q ss_pred CCEEEEecCCceee--eee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCC
Q 032030 44 ADLLLCESGGDNLA--ANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLA 102 (148)
Q Consensus 44 ~D~IliEtsG~~~~--~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~ 102 (148)
.-+.|+.|.|.... ... .-..+|..++|+|+..+...+. ....+++ -++++||+|+.
T Consensus 92 ~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p--~iv~iNK~D~~ 157 (836)
T PTZ00416 92 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIR--PVLFINKVDRA 157 (836)
T ss_pred eEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCC--EEEEEEChhhh
Confidence 34678889986421 111 1145789999999988754321 1122344 69999999997
No 328
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=80.89 E-value=3.1 Score=31.10 Aligned_cols=50 Identities=20% Similarity=0.046 Sum_probs=31.3
Q ss_pred eEEEEecCCCCCchhhh--------------HHHHHHHHHhc-CCCCcEEEEEec--CCCCHHHHHHhh
Q 032030 92 DLLVINKTDLASAIGAD--------------LAVMERDALRM-RDGGPFIFAQVG--WVIGIIFTLSIT 143 (148)
Q Consensus 92 DivViNK~DL~~~~~~~--------------l~~~~~~i~~~-np~a~vi~tSa~--~g~gi~~l~~~~ 143 (148)
-++|.||+||.+. .. ........... ......+.+|++ ++.++.+++...
T Consensus 114 iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~ 180 (219)
T COG1100 114 ILLVGNKIDLFDE--QSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180 (219)
T ss_pred EEEEecccccccc--hhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHH
Confidence 6999999999876 32 11111111111 112237899999 999999887654
No 329
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=80.87 E-value=5.4 Score=29.11 Aligned_cols=74 Identities=18% Similarity=0.076 Sum_probs=43.1
Q ss_pred hcCCCEEEEecCCceeeeeec-cccCceEEEEEeCCCCCC--cc---c-cCCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 41 LFKADLLLCESGGDNLAANFS-RELADYIIYIIDVSGGDK--IP---R-KGGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 41 ~~~~D~IliEtsG~~~~~~~~-~~~~d~~i~vvDa~~~~~--~~---~-~~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
..++|+|+|.+.|........ -..+|.++.++.+....- .. . ......+ -.+|+||+|..+. ..+.++
T Consensus 90 ~~~~d~viiDtpp~~~~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~--~~vV~N~~~~~~~---~~~~~~ 164 (179)
T cd03110 90 AEGAELIIIDGPPGIGCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIP--VGVVINKYDLNDE---IAEEIE 164 (179)
T ss_pred hcCCCEEEEECcCCCcHHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCC--EEEEEeCCCCCcc---hHHHHH
Confidence 368999999999653221111 135788888888765421 00 0 0111233 3699999997654 234556
Q ss_pred HHHHhc
Q 032030 114 RDALRM 119 (148)
Q Consensus 114 ~~i~~~ 119 (148)
+.+++.
T Consensus 165 ~~~~~~ 170 (179)
T cd03110 165 DYCEEE 170 (179)
T ss_pred HHHHHc
Confidence 666654
No 330
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=80.47 E-value=3 Score=32.88 Aligned_cols=27 Identities=15% Similarity=-0.062 Sum_probs=22.8
Q ss_pred CCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 120 RDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 120 np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
..-.||+..||+++.|+++|++.+.-.
T Consensus 238 ~~~~pv~~gSa~~~~G~~~ll~~~~~~ 264 (268)
T cd04170 238 GLLVPVLCGSALTNIGVRELLDALVHL 264 (268)
T ss_pred CCEEEEEEeeCCCCcCHHHHHHHHHHh
Confidence 455699999999999999999987643
No 331
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=79.46 E-value=1.8 Score=39.71 Aligned_cols=55 Identities=25% Similarity=0.171 Sum_probs=32.5
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCcc-------ccCCCCcceeeEEEEecCC
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIP-------RKGGPGITQADLLVINKTD 100 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~-------~~~~~qi~~ADivViNK~D 100 (148)
++-+-+|.+.|-... ... ..-+.|..+++||+.+|--.+ .....+-+ ++|+||+|
T Consensus 71 ~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~---~lvinkid 135 (887)
T KOG0467|consen 71 DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKP---ILVINKID 135 (887)
T ss_pred ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCce---EEEEehhh
Confidence 455566777774321 111 113567789999999884321 12223344 99999999
No 332
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=79.46 E-value=16 Score=30.53 Aligned_cols=114 Identities=17% Similarity=0.219 Sum_probs=63.5
Q ss_pred CCCeeeeec--cchhhc-hHHHHHhhhhcCCCEEEEecCCceee-eee-----------cc---ccCceEEEEEeCCCCC
Q 032030 17 GGCPHAAIR--EDISIN-LGPLEELSNLFKADLLLCESGGDNLA-ANF-----------SR---ELADYIIYIIDVSGGD 78 (148)
Q Consensus 17 nGcicc~i~--~dl~~~-~~al~~l~~~~~~D~IliEtsG~~~~-~~~-----------~~---~~~d~~i~vvDa~~~~ 78 (148)
.||...+-+ .|...+ -+++.+ +...++|+++|.|.|=.+- ..+ .+ .--+.++.++||..|-
T Consensus 193 ~gv~vI~~~~G~DpAaVafDAi~~-Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 193 LGVPVISGKEGADPAAVAFDAIQA-AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred hCCeEEccCCCCCcHHHHHHHHHH-HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 688777633 455432 245543 4456999999999996421 010 11 1113356667998885
Q ss_pred Cc--cc-cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHH
Q 032030 79 KI--PR-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 140 (148)
Q Consensus 79 ~~--~~-~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~ 140 (148)
+- +. .+...+. =|-++++|.|-... + -.+....++++ .||.++-. |++++.|.
T Consensus 272 nal~QAk~F~eav~-l~GiIlTKlDgtAK-G---G~il~I~~~l~--~PI~fiGv--GE~~~DL~ 327 (340)
T COG0552 272 NALSQAKIFNEAVG-LDGIILTKLDGTAK-G---GIILSIAYELG--IPIKFIGV--GEGYDDLR 327 (340)
T ss_pred hHHHHHHHHHHhcC-CceEEEEecccCCC-c---ceeeeHHHHhC--CCEEEEeC--CCChhhcc
Confidence 42 11 1111111 27999999994332 1 12333334333 68888774 78888774
No 333
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=79.17 E-value=6.5 Score=33.84 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=51.0
Q ss_pred CCCEEEEecCCceee--e------eec-cccCceEEEEEeCCCCCCccc---cCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 43 KADLLLCESGGDNLA--A------NFS-RELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--~------~~~-~~~~d~~i~vvDa~~~~~~~~---~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
..|+|+|.|.|.... + .+. ....|.+++|+|+..+.+... .+...++ .+-+|+||.|-....+.-+
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~-i~gvIlTKlD~~a~~G~~l- 252 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVG-IGGIIITKLDGTAKGGGAL- 252 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCC-CCEEEEecccCCCcccHHH-
Confidence 469999999997531 1 111 113467899999977643211 1112222 3688999999876533322
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
..... -+.||.+++. |+.++.|
T Consensus 253 ---s~~~~--~~~Pi~fig~--Ge~v~Dl 274 (437)
T PRK00771 253 ---SAVAE--TGAPIKFIGT--GEKIDDL 274 (437)
T ss_pred ---HHHHH--HCcCEEEEec--CCCcccC
Confidence 22222 2468888773 6666554
No 334
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=78.87 E-value=1.3 Score=33.82 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=49.2
Q ss_pred hcCCCEEEEecCCceee--------eeec-cccCceEEEEEeCCCCCCcccc---CCCCcceeeEEEEecCCCCCchhhh
Q 032030 41 LFKADLLLCESGGDNLA--------ANFS-RELADYIIYIIDVSGGDKIPRK---GGPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 41 ~~~~D~IliEtsG~~~~--------~~~~-~~~~d~~i~vvDa~~~~~~~~~---~~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
..++|+|+|-|.|.... ..+. ....+.++.|+++..+.+.... +...+. -+-++++|.|-....+.-
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~-~~~lIlTKlDet~~~G~~ 159 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFG-IDGLILTKLDETARLGAL 159 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSS-TCEEEEESTTSSSTTHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhccc-CceEEEEeecCCCCcccc
Confidence 35799999999997631 1111 1124567888998766432110 001111 257889999998764443
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCCCHH
Q 032030 109 LAVMERDALRMRDGGPFIFAQVGWVIGII 137 (148)
Q Consensus 109 l~~~~~~i~~~np~a~vi~tSa~~g~gi~ 137 (148)
.....+ .+.|+-.+|- |++++
T Consensus 160 ----l~~~~~--~~~Pi~~it~--Gq~V~ 180 (196)
T PF00448_consen 160 ----LSLAYE--SGLPISYITT--GQRVD 180 (196)
T ss_dssp ----HHHHHH--HTSEEEEEES--SSSTT
T ss_pred ----eeHHHH--hCCCeEEEEC--CCChh
Confidence 333332 3357777773 55553
No 335
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=78.61 E-value=2.6 Score=33.36 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=36.6
Q ss_pred CCEEEEecCCceee------eee-----------ccccCceEEEEEeCCCCCCcc------c-cCCCCcceeeEEEEecC
Q 032030 44 ADLLLCESGGDNLA------ANF-----------SRELADYIIYIIDVSGGDKIP------R-KGGPGITQADLLVINKT 99 (148)
Q Consensus 44 ~D~IliEtsG~~~~------~~~-----------~~~~~d~~i~vvDa~~~~~~~------~-~~~~qi~~ADivViNK~ 99 (148)
+|+.+|-+.|.... ..+ .....+.+++|+|+.....-. . ..+...+ .++|+||+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~r--ti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGER--TIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCc--EEEEEECC
Confidence 88899999998521 001 011345789999987643211 1 1123445 68899999
Q ss_pred CCCCc
Q 032030 100 DLASA 104 (148)
Q Consensus 100 DL~~~ 104 (148)
|..++
T Consensus 203 D~~~~ 207 (240)
T smart00053 203 DLMDE 207 (240)
T ss_pred CCCCc
Confidence 99876
No 336
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=78.06 E-value=6.1 Score=33.76 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=51.3
Q ss_pred HHHHHhhhhcCCCEEEEecCCceee-----e---eecc-ccCceEEEEEeCCCCC-CccccCC-CCcceeeEEEEecCCC
Q 032030 33 GPLEELSNLFKADLLLCESGGDNLA-----A---NFSR-ELADYIIYIIDVSGGD-KIPRKGG-PGITQADLLVINKTDL 101 (148)
Q Consensus 33 ~al~~l~~~~~~D~IliEtsG~~~~-----~---~~~~-~~~d~~i~vvDa~~~~-~~~~~~~-~qi~~ADivViNK~DL 101 (148)
.++.++....++|+|||.|.|.... . .+.. ...+..++|+++.... +...... -..-.-+-+++||.|-
T Consensus 275 ~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLDE 354 (407)
T PRK12726 275 EAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDE 354 (407)
T ss_pred HHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcccC
Confidence 3444443234689999999998531 0 1111 1124446667764332 1111100 0111136899999998
Q ss_pred CCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHH
Q 032030 102 ASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 102 ~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~ 138 (148)
....+.-+ ..... -+.|+..+|. |+++++
T Consensus 355 T~~~G~~L----sv~~~--tglPIsylt~--GQ~Vpd 383 (407)
T PRK12726 355 TTRIGDLY----TVMQE--TNLPVLYMTD--GQNITE 383 (407)
T ss_pred CCCccHHH----HHHHH--HCCCEEEEec--CCCCCc
Confidence 87644433 33332 3467878874 666654
No 337
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=75.24 E-value=3.8 Score=31.09 Aligned_cols=59 Identities=27% Similarity=0.271 Sum_probs=29.8
Q ss_pred CCEEEEecCCceee-eee-----ccccCceEEEEEeCCCCCC-----------c---cccCCCCcceeeEEEEecCCCCC
Q 032030 44 ADLLLCESGGDNLA-ANF-----SRELADYIIYIIDVSGGDK-----------I---PRKGGPGITQADLLVINKTDLAS 103 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~-----~~~~~d~~i~vvDa~~~~~-----------~---~~~~~~qi~~ADivViNK~DL~~ 103 (148)
..+-+|...|-.-. ..+ ....+..+|+|+|+..... + ....+..++ -+|+.||.|+..
T Consensus 49 ~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~p--iLIacNK~Dl~~ 126 (181)
T PF09439_consen 49 KKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPP--ILIACNKQDLFT 126 (181)
T ss_dssp TCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--E--EEEEEE-TTSTT
T ss_pred CEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCC--EEEEEeCccccc
Confidence 34556666775311 111 1123456799999875321 0 011223445 789999999987
Q ss_pred c
Q 032030 104 A 104 (148)
Q Consensus 104 ~ 104 (148)
.
T Consensus 127 A 127 (181)
T PF09439_consen 127 A 127 (181)
T ss_dssp -
T ss_pred c
Confidence 5
No 338
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.87 E-value=2.6 Score=36.12 Aligned_cols=127 Identities=19% Similarity=0.217 Sum_probs=64.0
Q ss_pred CCCCChhhhhhhhhcCCCeeeeecc--chhhc-hHHHHHhhhhcCCCEEEEecCCceee-ee-ec-------cccCceEE
Q 032030 2 RNGALPEERIRAVETGGCPHAAIRE--DISIN-LGPLEELSNLFKADLLLCESGGDNLA-AN-FS-------RELADYII 69 (148)
Q Consensus 2 ~~~~~~~~~~~~~~~nGcicc~i~~--dl~~~-~~al~~l~~~~~~D~IliEtsG~~~~-~~-~~-------~~~~d~~i 69 (148)
|-|++|-=++.... .+|+--+--. |.... .+.+.+. ...+||+|++.|||=... +. |. ...-|.+|
T Consensus 141 RagAfDQLkqnA~k-~~iP~ygsyte~dpv~ia~egv~~f-Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi 218 (483)
T KOG0780|consen 141 RAGAFDQLKQNATK-ARVPFYGSYTEADPVKIASEGVDRF-KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEII 218 (483)
T ss_pred ccchHHHHHHHhHh-hCCeeEecccccchHHHHHHHHHHH-HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEE
Confidence 45555543333322 4666443322 22221 1233333 345899999999997532 11 11 01236789
Q ss_pred EEEeCCCCCCc--c-ccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 70 YIIDVSGGDKI--P-RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 70 ~vvDa~~~~~~--~-~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
+|+|+.-|-.. + ..+...+.. --++++|.|--..=+..+..+ . -...||+++- ||+.+++|
T Consensus 219 ~VmDasiGQaae~Qa~aFk~~vdv-g~vIlTKlDGhakGGgAlSaV----a--aTksPIiFIG--tGEhmdDl 282 (483)
T KOG0780|consen 219 FVMDASIGQAAEAQARAFKETVDV-GAVILTKLDGHAKGGGALSAV----A--ATKSPIIFIG--TGEHMDDL 282 (483)
T ss_pred EEEeccccHhHHHHHHHHHHhhcc-ceEEEEecccCCCCCceeeeh----h--hhCCCEEEEe--cCcccccc
Confidence 99999877432 1 111111111 268899999644311222222 1 1235777764 67777765
No 339
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=74.60 E-value=1.6 Score=36.61 Aligned_cols=90 Identities=20% Similarity=0.116 Sum_probs=50.5
Q ss_pred CCCEEEEecCCce--e----eeeecc-----ccCceEEEEEeCCCCCCc-cc------cCCCCccee-----eEEEEecC
Q 032030 43 KADLLLCESGGDN--L----AANFSR-----ELADYIIYIIDVSGGDKI-PR------KGGPGITQA-----DLLVINKT 99 (148)
Q Consensus 43 ~~D~IliEtsG~~--~----~~~~~~-----~~~d~~i~vvDa~~~~~~-~~------~~~~qi~~A-----DivViNK~ 99 (148)
+-.+++..|+|-. + .+.|.. .-+|+++-|+|.+++..- +. ...-+++-+ =+=|=||+
T Consensus 225 g~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnki 304 (410)
T KOG0410|consen 225 GNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKI 304 (410)
T ss_pred CcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccc
Confidence 4568888888863 1 133321 246889999999887431 10 000011000 02245666
Q ss_pred CCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 100 DLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 100 DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
|..+. . ..+ -++. .+..||++|.|++++++...
T Consensus 305 D~e~~--~--------~e~-E~n~-~v~isaltgdgl~el~~a~~ 337 (410)
T KOG0410|consen 305 DYEED--E--------VEE-EKNL-DVGISALTGDGLEELLKAEE 337 (410)
T ss_pred ccccc--c--------Ccc-ccCC-ccccccccCccHHHHHHHHH
Confidence 66544 1 111 1112 57899999999999987653
No 340
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.50 E-value=8.7 Score=33.84 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=52.9
Q ss_pred HHHHHhhhhcCCCEEEEecCCceee--------eeec-cccCceEEEEEeCCCCCCc-cc--c------CCCCcceeeEE
Q 032030 33 GPLEELSNLFKADLLLCESGGDNLA--------ANFS-RELADYIIYIIDVSGGDKI-PR--K------GGPGITQADLL 94 (148)
Q Consensus 33 ~al~~l~~~~~~D~IliEtsG~~~~--------~~~~-~~~~d~~i~vvDa~~~~~~-~~--~------~~~qi~~ADiv 94 (148)
+|+.+ +++.+||+|+|.|.|--.- +.|. ...-|.+++|=.|.-|.+- .. . ..++=+.-|-+
T Consensus 457 ~AI~~-a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~ 535 (587)
T KOG0781|consen 457 EAIQE-ARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGI 535 (587)
T ss_pred HHHHH-HHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceE
Confidence 44433 4567999999999996421 1111 1134778887777666431 10 1 11233344899
Q ss_pred EEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEE
Q 032030 95 VINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 129 (148)
Q Consensus 95 ViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tS 129 (148)
+++|+|-+++ .+-.+.... .-.+.||+++-
T Consensus 536 ~ltk~dtv~d---~vg~~~~m~--y~~~~pi~fvg 565 (587)
T KOG0781|consen 536 LLTKFDTVDD---KVGAAVSMV--YITGKPILFVG 565 (587)
T ss_pred EEEeccchhh---HHHHHhhhe--eecCCceEEEe
Confidence 9999998876 222232222 23677888864
No 341
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=74.43 E-value=4 Score=30.43 Aligned_cols=98 Identities=7% Similarity=0.022 Sum_probs=54.2
Q ss_pred CCCEEEEecCCceeee--------------eeccccCceEEEEEeCCCCCCc--------cccCCCCcceeeEEEEecCC
Q 032030 43 KADLLLCESGGDNLAA--------------NFSRELADYIIYIIDVSGGDKI--------PRKGGPGITQADLLVINKTD 100 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~--------------~~~~~~~d~~i~vvDa~~~~~~--------~~~~~~qi~~ADivViNK~D 100 (148)
+..+.+|.|.|..... .......|.+++|+|+.+...- ....++.+-.=-++|+||.|
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d 127 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGD 127 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECcc
Confidence 5678999999985320 0112456889999998763210 01111111122479999999
Q ss_pred CCCchhhhHH--------HHHHHHHhcCCCCcEEEE-----EecCCCCHHHHHHhhh
Q 032030 101 LASAIGADLA--------VMERDALRMRDGGPFIFA-----QVGWVIGIIFTLSITH 144 (148)
Q Consensus 101 L~~~~~~~l~--------~~~~~i~~~np~a~vi~t-----Sa~~g~gi~~l~~~~~ 144 (148)
-... ..++ .+...+++-.. ..+.. |+..+.++++|++.+.
T Consensus 128 ~l~~--~~~~~~~~~~~~~l~~l~~~c~~--r~~~f~~~~~~~~~~~q~~~Ll~~i~ 180 (196)
T cd01852 128 DLEG--GTLEDYLENSCEALKRLLEKCGG--RYVAFNNKAKGEEQEQQVKELLAKVE 180 (196)
T ss_pred ccCC--CcHHHHHHhccHHHHHHHHHhCC--eEEEEeCCCCcchhHHHHHHHHHHHH
Confidence 7764 3222 23333333221 22333 3556788888887764
No 342
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=73.94 E-value=8.8 Score=35.00 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=50.1
Q ss_pred CEEEEecCCceeeeeec------cccCceEEEEEeCCCCCCccc-----cCCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 45 DLLLCESGGDNLAANFS------RELADYIIYIIDVSGGDKIPR-----KGGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 45 D~IliEtsG~~~~~~~~------~~~~d~~i~vvDa~~~~~~~~-----~~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
|+++|.+.|+.....++ ...+|++|+|+-+........ .....-+ =-+|+.||.|......+-.+.+.
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~Kp-niFIlnnkwDasase~ec~e~V~ 285 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKP-NIFILNNKWDASASEPECKEDVL 285 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCC-cEEEEechhhhhcccHHHHHHHH
Confidence 78888888886542221 246899999998865432110 0000111 13788888997554112334455
Q ss_pred HHHHhcCCC------CcEEEEEecC
Q 032030 114 RDALRMRDG------GPFIFAQVGW 132 (148)
Q Consensus 114 ~~i~~~np~------a~vi~tSa~~ 132 (148)
+.++++-|. -.|+++||+.
T Consensus 286 ~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 286 KQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHhcCcccHhhhcCeeEEEeccc
Confidence 555555542 3789999763
No 343
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=72.93 E-value=7 Score=30.36 Aligned_cols=55 Identities=13% Similarity=-0.080 Sum_probs=41.5
Q ss_pred CcceeeEEEEecCCCCCchhhhHH--HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 87 GITQADLLVINKTDLASAIGADLA--VMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 87 qi~~ADivViNK~DL~~~~~~~l~--~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
.-|.+-+++-||+|.-.. +..+ .......+.|..+.-+.||+|.+.+++|....+
T Consensus 133 g~Pv~~vllankCd~e~~--a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~l 189 (229)
T KOG4423|consen 133 GTPVPCVLLANKCDQEKS--AKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQREL 189 (229)
T ss_pred CCcchheeccchhccChH--hhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHH
Confidence 456668999999998765 4433 444555666888899999999999999876554
No 344
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=72.92 E-value=4.3 Score=32.51 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=35.0
Q ss_pred CceEEEEEeCCC-CCC---c--cccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcC--CCCcEEEEEe
Q 032030 65 ADYIIYIIDVSG-GDK---I--PRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMR--DGGPFIFAQV 130 (148)
Q Consensus 65 ~d~~i~vvDa~~-~~~---~--~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~n--p~a~vi~tSa 130 (148)
+|.+++++++.. +.. + .......++ -++|+||+|+.+. .+++...+.+++.- .+.++++...
T Consensus 115 vh~~ly~i~~~~~~l~~~D~~~lk~l~~~v~--vi~VinK~D~l~~--~e~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 115 VHACLYFIEPTGHGLKPLDIEFMKRLSKRVN--IIPVIAKADTLTP--EELKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred eEEEEEEEeCCCCCCCHHHHHHHHHHhccCC--EEEEEECCCcCCH--HHHHHHHHHHHHHHHHcCCceECCCC
Confidence 566788888764 211 1 111122344 6899999999887 66655444443221 2356666554
No 345
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=72.10 E-value=9.6 Score=33.20 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=40.1
Q ss_pred eEEEEecCCCCCch-------hhhHHHHHHHHHhc--CCCCcEEEEEecCCCCHHHHHHhh
Q 032030 92 DLLVINKTDLASAI-------GADLAVMERDALRM--RDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 92 DivViNK~DL~~~~-------~~~l~~~~~~i~~~--np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
-+||++|+|....+ ++.++.+.+.+|.. .-+|-++.||.++..+++-|..++
T Consensus 199 i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 199 IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 68999999975421 14556788888864 578999999999999999887654
No 346
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=71.96 E-value=7.2 Score=33.70 Aligned_cols=96 Identities=19% Similarity=0.163 Sum_probs=52.3
Q ss_pred HHHHhhhhcCCCEEEEecCCcee-eeeeccc--------cCceEEEEEeCCCCCCc---cccCCCCcceeeEEEEecCCC
Q 032030 34 PLEELSNLFKADLLLCESGGDNL-AANFSRE--------LADYIIYIIDVSGGDKI---PRKGGPGITQADLLVINKTDL 101 (148)
Q Consensus 34 al~~l~~~~~~D~IliEtsG~~~-~~~~~~~--------~~d~~i~vvDa~~~~~~---~~~~~~qi~~ADivViNK~DL 101 (148)
++.+ +....+|+|+|.|.|=.. ...+..+ --|-+++|+|+.-|-+. ...+..++.. .=|+++|.|-
T Consensus 174 al~~-ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-tGvIlTKlDG 251 (451)
T COG0541 174 ALEK-AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-TGVILTKLDG 251 (451)
T ss_pred HHHH-HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-ceEEEEcccC
Confidence 4433 344579999999999642 2221111 12567999999888542 1122223221 3789999997
Q ss_pred CCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 102 ASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 102 ~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
-..=++-| . ++. --+.||-++. +|+.++.|
T Consensus 252 daRGGaAL----S-~~~-~tg~PIkFiG--tGEki~dL 281 (451)
T COG0541 252 DARGGAAL----S-ARA-ITGKPIKFIG--TGEKIDDL 281 (451)
T ss_pred CCcchHHH----h-hHH-HHCCCeEEEe--cCCCcccC
Confidence 55411211 1 111 1346776665 45555543
No 347
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=71.44 E-value=8.4 Score=29.74 Aligned_cols=51 Identities=25% Similarity=0.446 Sum_probs=32.8
Q ss_pred CCCCChhhhhhhhh--cCCCeeeeec--cchhhchHHHHHhhhhcCCCEEEEecCCce
Q 032030 2 RNGALPEERIRAVE--TGGCPHAAIR--EDISINLGPLEELSNLFKADLLLCESGGDN 55 (148)
Q Consensus 2 ~~~~~~~~~~~~~~--~nGcicc~i~--~dl~~~~~al~~l~~~~~~D~IliEtsG~~ 55 (148)
++|+||.++++.+- ..|..|.+=| |...+..+++.+|.+ .++|.|+ |||-.
T Consensus 96 ~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~-lG~~rVL--TSGg~ 150 (201)
T PF03932_consen 96 EDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIE-LGFDRVL--TSGGA 150 (201)
T ss_dssp TTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHH-HT-SEEE--ESTTS
T ss_pred CCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHh-cCCCEEE--CCCCC
Confidence 57999999998732 3577776654 444444567777665 4899999 88843
No 348
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=70.92 E-value=12 Score=32.27 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=34.1
Q ss_pred eEEEEecCCCCCchhhhHHHHHH----HHHh--------------------cC-C---CCcEEEEEecCCCCHHHHHHhh
Q 032030 92 DLLVINKTDLASAIGADLAVMER----DALR--------------------MR-D---GGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~----~i~~--------------------~n-p---~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
.++|++|+|.-+. .-+++-.+ .++. .| | -.|||.+|-.+|.+++-|-.++
T Consensus 276 VfvVVTKIDMCPA--NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 276 VFVVVTKIDMCPA--NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred EEEEEEeeccCcH--HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 7999999999887 65554333 3332 01 1 2578999999999998765443
No 349
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=70.56 E-value=13 Score=33.20 Aligned_cols=85 Identities=11% Similarity=0.095 Sum_probs=47.1
Q ss_pred cCCCEEEEecCCceeee--------eeccccCceEEEEEeCCCCC-Ccc---ccCCCCcceeeEEEEecCCCCCchhhhH
Q 032030 42 FKADLLLCESGGDNLAA--------NFSRELADYIIYIIDVSGGD-KIP---RKGGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~~--------~~~~~~~d~~i~vvDa~~~~-~~~---~~~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
.++|+|||.|.|..... .+........++|+++.... ++. ..+... .-+-+|+||.|.....+.
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f~~~--~~~gvILTKlDEt~~lG~-- 502 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAHA--KPQGVVLTKLDETGRFGS-- 502 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHHHhh--CCeEEEEecCcCccchhH--
Confidence 36999999999985310 11101122346777776542 221 111111 126899999999766333
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCH
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGI 136 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi 136 (148)
+...+.. .+.||.+++. |..+
T Consensus 503 --aLsv~~~--~~LPI~yvt~--GQ~V 523 (559)
T PRK12727 503 --ALSVVVD--HQMPITWVTD--GQRV 523 (559)
T ss_pred --HHHHHHH--hCCCEEEEeC--CCCc
Confidence 3333332 3468888874 5666
No 350
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.69 E-value=25 Score=30.36 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=48.5
Q ss_pred hhcCCCEEEEecCCceee-----ee---ec----cccCceEEEEEeCCCCCC-ccc---cCCCCcceeeEEEEecCCCCC
Q 032030 40 NLFKADLLLCESGGDNLA-----AN---FS----RELADYIIYIIDVSGGDK-IPR---KGGPGITQADLLVINKTDLAS 103 (148)
Q Consensus 40 ~~~~~D~IliEtsG~~~~-----~~---~~----~~~~d~~i~vvDa~~~~~-~~~---~~~~qi~~ADivViNK~DL~~ 103 (148)
...++|+|+|.|.|.... .. +. +......+.|+|+..+.+ ... .+ +--..+-++++|.|-..
T Consensus 296 ~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f--~~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 296 ARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY--ESLNYRRILLTKLDEAD 373 (432)
T ss_pred HhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh--cCCCCCEEEEEcccCCC
Confidence 345899999999997521 11 11 111234678899887753 111 11 11123799999999877
Q ss_pred chhhhHHHHHHHHHhcCCCCcEEEEEec
Q 032030 104 AIGADLAVMERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 104 ~~~~~l~~~~~~i~~~np~a~vi~tSa~ 131 (148)
..+. +...... -+.|+..++..
T Consensus 374 ~~G~----il~i~~~--~~lPI~ylt~G 395 (432)
T PRK12724 374 FLGS----FLELADT--YSKSFTYLSVG 395 (432)
T ss_pred CccH----HHHHHHH--HCCCEEEEecC
Confidence 6444 3333332 24677777753
No 351
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=68.75 E-value=14 Score=29.04 Aligned_cols=107 Identities=7% Similarity=-0.034 Sum_probs=54.5
Q ss_pred HHHHHhhhhcCCCEEEEecCCcee-------eee-------eccccCceEEEEEeCCCCCC--cc----ccCCCCcceee
Q 032030 33 GPLEELSNLFKADLLLCESGGDNL-------AAN-------FSRELADYIIYIIDVSGGDK--IP----RKGGPGITQAD 92 (148)
Q Consensus 33 ~al~~l~~~~~~D~IliEtsG~~~-------~~~-------~~~~~~d~~i~vvDa~~~~~--~~----~~~~~qi~~AD 92 (148)
..+.++.+...||+|++-|.-.+. +.. +.....+.++.|+.+....- .. ......++. .
T Consensus 114 ~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v-~ 192 (254)
T cd00550 114 DEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDV-D 192 (254)
T ss_pred HHHHHHHhcCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCC-C
Confidence 334455555589999999976532 111 11122345666666543211 00 000112221 4
Q ss_pred EEEEecCCCCCc-----hh---hhHHHHHHHHHhcCCCCcEEEEEecCC--CCHHHHH
Q 032030 93 LLVINKTDLASA-----IG---ADLAVMERDALRMRDGGPFIFAQVGWV--IGIIFTL 140 (148)
Q Consensus 93 ivViNK~DL~~~-----~~---~~l~~~~~~i~~~np~a~vi~tSa~~g--~gi~~l~ 140 (148)
-+|+||+.-... +. +...+..+.+++..+..|++.+-.... .|++.|-
T Consensus 193 gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~~~e~~g~~~L~ 250 (254)
T cd00550 193 AVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLLPEEVVGLEKLE 250 (254)
T ss_pred EEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecCCCCCCCHHHHH
Confidence 799999875332 11 122334455565666777777665543 3666664
No 352
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=67.77 E-value=1.7 Score=31.86 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=38.5
Q ss_pred CCCEEEEecCCceeeeee-ccccCceEEEEEeCCCCCC-----cc---ccCCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 43 KADLLLCESGGDNLAANF-SRELADYIIYIIDVSGGDK-----IP---RKGGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~-~~~~~d~~i~vvDa~~~~~-----~~---~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
.+|+|+|++.+..-.... .-..+|.+|.++++....- +. ......+ .--.+|+||++.-.+ ...++..
T Consensus 94 ~yD~iiiD~~~~~~~~~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~-~~~~vv~N~v~~~~~--~~~~~~~ 170 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSDPVRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKL-KIIGVVINRVDPGNE--SKLQEEI 170 (195)
T ss_dssp TSSEEEEEECSSSSHHHHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTE-EEEEEEEEEETSCCH--HHHHHHH
T ss_pred cccceeecccccccHHHHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhcccc-ceEEEEEeeeCCCcc--chHHHHH
Confidence 499999999885321110 1236788899898754320 00 0000011 124789999998765 5444433
No 353
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.66 E-value=3.9 Score=35.00 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=39.2
Q ss_pred EEEEecCCceee--e----e--e------ccccCceEEEEEeCCCCC---Ccc----cc--CCCCcceeeEEEEecCCCC
Q 032030 46 LLLCESGGDNLA--A----N--F------SRELADYIIYIIDVSGGD---KIP----RK--GGPGITQADLLVINKTDLA 102 (148)
Q Consensus 46 ~IliEtsG~~~~--~----~--~------~~~~~d~~i~vvDa~~~~---~~~----~~--~~~qi~~ADivViNK~DL~ 102 (148)
+=+|||.|+.-- + . | -...+|.++.+.|+.-.+ ++. .. ...++ .||+||+|.+
T Consensus 149 vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki----RVVLNKADqV 224 (532)
T KOG1954|consen 149 VTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI----RVVLNKADQV 224 (532)
T ss_pred eeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee----EEEecccccc
Confidence 558999998521 0 1 1 024679999999985432 110 11 11233 6999999999
Q ss_pred CchhhhHHHHHH
Q 032030 103 SAIGADLAVMER 114 (148)
Q Consensus 103 ~~~~~~l~~~~~ 114 (148)
+. .++-++..
T Consensus 225 dt--qqLmRVyG 234 (532)
T KOG1954|consen 225 DT--QQLMRVYG 234 (532)
T ss_pred CH--HHHHHHHH
Confidence 98 88766553
No 354
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=67.22 E-value=8.9 Score=32.39 Aligned_cols=89 Identities=12% Similarity=0.123 Sum_probs=49.6
Q ss_pred cCCCEEEEecCCceee--------eeecc-ccCceEEEEEeCCCCCCc-c---ccCCC-------CcceeeEEEEecCCC
Q 032030 42 FKADLLLCESGGDNLA--------ANFSR-ELADYIIYIIDVSGGDKI-P---RKGGP-------GITQADLLVINKTDL 101 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~--------~~~~~-~~~d~~i~vvDa~~~~~~-~---~~~~~-------qi~~ADivViNK~DL 101 (148)
.+.|+|+|.|.|.... +.+.. ......+.|+++..+.+. . ..+.. .++.-+-++++|.|-
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 4689999999998631 11111 112345788998776432 1 11110 111235889999998
Q ss_pred CCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHH
Q 032030 102 ASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 102 ~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~ 138 (148)
....+.-+ ..+.+ -+.|+..++. |.++.+
T Consensus 294 t~~~G~~l----~~~~~--~~lPi~yvt~--Gq~VPe 322 (374)
T PRK14722 294 ASNLGGVL----DTVIR--YKLPVHYVST--GQKVPE 322 (374)
T ss_pred CCCccHHH----HHHHH--HCcCeEEEec--CCCCCc
Confidence 87644433 33332 3467777774 555543
No 355
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=66.93 E-value=12 Score=27.87 Aligned_cols=62 Identities=19% Similarity=0.135 Sum_probs=34.2
Q ss_pred cCCCEEEEecCCceee--eeeccccCceEEEEEeCCCCCCc-cccCCCCcce----eeEEEEecCCCCC
Q 032030 42 FKADLLLCESGGDNLA--ANFSRELADYIIYIIDVSGGDKI-PRKGGPGITQ----ADLLVINKTDLAS 103 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~--~~~~~~~~d~~i~vvDa~~~~~~-~~~~~~qi~~----ADivViNK~DL~~ 103 (148)
..+|+|||++...... +......+|.++.|+++...... ......+++. ---+|+||.|...
T Consensus 126 ~~yD~ViiD~pp~~~~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTVTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCccccchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 4799999999874321 11112357889999987644210 0000001111 1257889988543
No 356
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=66.72 E-value=7.6 Score=33.18 Aligned_cols=85 Identities=13% Similarity=0.195 Sum_probs=48.2
Q ss_pred cCCCEEEEecCCceee--------eeecc-c-cCceEEEEEeCCCCCC-cc---ccCCCCcceeeEEEEecCCCCCchhh
Q 032030 42 FKADLLLCESGGDNLA--------ANFSR-E-LADYIIYIIDVSGGDK-IP---RKGGPGITQADLLVINKTDLASAIGA 107 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~--------~~~~~-~-~~d~~i~vvDa~~~~~-~~---~~~~~qi~~ADivViNK~DL~~~~~~ 107 (148)
.++|+|||.|.|.... ..+.. . .......|+++..... .. ..+. .+. .+-+++||.|-....+
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~-~~~-~~~vI~TKlDet~~~G- 374 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS-RLP-LDGLIFTKLDETSSLG- 374 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC-CCC-CCEEEEeccccccccc-
Confidence 3699999999998521 11111 1 1124467788765532 11 1111 222 2579999999876533
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCCCCH
Q 032030 108 DLAVMERDALRMRDGGPFIFAQVGWVIGI 136 (148)
Q Consensus 108 ~l~~~~~~i~~~np~a~vi~tSa~~g~gi 136 (148)
.+...+.+ .+.|+..++. |.++
T Consensus 375 ---~i~~~~~~--~~lPv~yit~--Gq~V 396 (424)
T PRK05703 375 ---SILSLLIE--SGLPISYLTN--GQRV 396 (424)
T ss_pred ---HHHHHHHH--HCCCEEEEeC--CCCC
Confidence 34444443 3468888874 5665
No 357
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=65.79 E-value=8.5 Score=35.17 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=36.5
Q ss_pred CCEEEEecCCceee-eeecc--ccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCc
Q 032030 44 ADLLLCESGGDNLA-ANFSR--ELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~~~--~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~ 104 (148)
+-+=+|-|.|-... ....+ ...|..+.|+|+..|-..+. .....+| -++++||.|+...
T Consensus 76 ~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp--~i~fiNKmDR~~a 143 (697)
T COG0480 76 YRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVP--RILFVNKMDRLGA 143 (697)
T ss_pred eEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCC--eEEEEECcccccc
Confidence 55557777775421 11111 24578899999998854321 1123455 6999999999875
No 358
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=65.18 E-value=10 Score=30.21 Aligned_cols=27 Identities=11% Similarity=-0.103 Sum_probs=22.8
Q ss_pred CCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 120 RDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 120 np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
..-.||+..||.++.|+.+|++.+...
T Consensus 240 ~~~~PV~~gSa~~~~Gi~~lld~i~~~ 266 (270)
T cd01886 240 NKIVPVLCGSAFKNKGVQPLLDAVVDY 266 (270)
T ss_pred CcEEEEEeCcCCCCcCHHHHHHHHHHh
Confidence 345699999999999999999987654
No 359
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=64.20 E-value=25 Score=28.87 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=36.0
Q ss_pred HHHhhhhcCCCEEEEecCCceeeeee-c-cccCceEEEEEeCCCCCC----ccc----cCCCCcceeeEEEEecCCC
Q 032030 35 LEELSNLFKADLLLCESGGDNLAANF-S-RELADYIIYIIDVSGGDK----IPR----KGGPGITQADLLVINKTDL 101 (148)
Q Consensus 35 l~~l~~~~~~D~IliEtsG~~~~~~~-~-~~~~d~~i~vvDa~~~~~----~~~----~~~~qi~~ADivViNK~DL 101 (148)
...+.+..++|+|+.. .-| + ....|+-|+++|+.++.. +|. ....++..||++|+||.+-
T Consensus 113 ~~~~~~~~~~dviilD-------DGfQh~~l~rD~~IvlvD~~~~fgng~lLPaGpLREp~~~l~raD~vvv~~~~~ 182 (311)
T TIGR00682 113 ILLILEQLDPDVIILD-------DGLQHRKLHRDVEIVVVDGQRPFGNGFLLPAGPLREFPKRLKSADAVIVNGGEN 182 (311)
T ss_pred HHHHHhcCCCCEEEEC-------CCCcCccccCCeEEEEECCCCCCCCCcccCCcCCCCChhhhhhCCEEEEeCCcc
Confidence 3333344468877732 112 1 123577799999876532 232 1123789999999999853
No 360
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=64.18 E-value=15 Score=33.92 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=48.8
Q ss_pred cCCCEEEEecCCceee--------eeec-cccCceEEEEEeCCCCCC-cc---ccCCCCc-ceeeEEEEecCCCCCchhh
Q 032030 42 FKADLLLCESGGDNLA--------ANFS-RELADYIIYIIDVSGGDK-IP---RKGGPGI-TQADLLVINKTDLASAIGA 107 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~--------~~~~-~~~~d~~i~vvDa~~~~~-~~---~~~~~qi-~~ADivViNK~DL~~~~~~ 107 (148)
.++|+|||.|.|.... ..+. ...-+..+.|+|+....+ +. ..+.... ..-+-++++|.|-....+.
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~ 341 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGP 341 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccH
Confidence 3689999999996421 1111 112244688889875422 11 1121110 0125899999998876444
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCCCCH
Q 032030 108 DLAVMERDALRMRDGGPFIFAQVGWVIGI 136 (148)
Q Consensus 108 ~l~~~~~~i~~~np~a~vi~tSa~~g~gi 136 (148)
+...... -+.||.+++. |+++
T Consensus 342 ----iL~i~~~--~~lPI~yit~--GQ~V 362 (767)
T PRK14723 342 ----ALDTVIR--HRLPVHYVST--GQKV 362 (767)
T ss_pred ----HHHHHHH--HCCCeEEEec--CCCC
Confidence 3333332 3468888874 6776
No 361
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=63.29 E-value=33 Score=21.23 Aligned_cols=18 Identities=44% Similarity=0.512 Sum_probs=11.2
Q ss_pred cccCceEEEEEeCCCCCC
Q 032030 62 RELADYIIYIIDVSGGDK 79 (148)
Q Consensus 62 ~~~~d~~i~vvDa~~~~~ 79 (148)
.++.+.+++++|+++.-.
T Consensus 11 ~hL~~~ilfi~D~Se~CG 28 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCG 28 (58)
T ss_dssp GGT-SEEEEEE-TT-TTS
T ss_pred HhhcceEEEEEcCCCCCC
Confidence 367788999999986543
No 362
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=62.95 E-value=9.9 Score=23.03 Aligned_cols=28 Identities=14% Similarity=0.015 Sum_probs=17.3
Q ss_pred CCCCcEEEEEecCCCC-----HHHHHHhhhhhc
Q 032030 120 RDGGPFIFAQVGWVIG-----IIFTLSITHYIV 147 (148)
Q Consensus 120 np~a~vi~tSa~~g~g-----i~~l~~~~~~~~ 147 (148)
....||++||.+.... ...++....|.+
T Consensus 21 ~~~~PVVFTS~Lg~~~~~~~~~~~~~g~~~~~i 53 (58)
T PF08415_consen 21 AAVMPVVFTSMLGVDDDDDDSSRSSFGELVYGI 53 (58)
T ss_pred CCcCCEEEeCCCCCCccccchhhhhccccCeEE
Confidence 3557999999985433 344555554543
No 363
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=62.93 E-value=17 Score=27.51 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=45.5
Q ss_pred EEEEEeCCCCCCcc--------c--cCCCCcceeeEEEEecCCCCCchh-hhHHHHH----HHHHhcCCCCcEEEEEecC
Q 032030 68 IIYIIDVSGGDKIP--------R--KGGPGITQADLLVINKTDLASAIG-ADLAVME----RDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 68 ~i~vvDa~~~~~~~--------~--~~~~qi~~ADivViNK~DL~~~~~-~~l~~~~----~~i~~~np~a~vi~tSa~~ 132 (148)
++++.|-.....+. . .....+| ++|.+|.|+.-.+. +..+.+. ++.+.. +|+.+++|+-.
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP---ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~m--nAsL~F~Sts~ 170 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP---ILVGTKYDLFIDLPPELQETISRQARKYAKVM--NASLFFCSTSH 170 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccce---EEeccchHhhhcCCHHHHHHHHHHHHHHHHHh--CCcEEEeeccc
Confidence 47778876654321 1 1234677 99999999632111 3334443 333433 47899999999
Q ss_pred CCCHHHHHHhhh
Q 032030 133 VIGIIFTLSITH 144 (148)
Q Consensus 133 g~gi~~l~~~~~ 144 (148)
..++..+|..+.
T Consensus 171 sINv~KIFK~vl 182 (205)
T KOG1673|consen 171 SINVQKIFKIVL 182 (205)
T ss_pred cccHHHHHHHHH
Confidence 999999987653
No 364
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=62.48 E-value=19 Score=32.11 Aligned_cols=49 Identities=12% Similarity=-0.026 Sum_probs=36.8
Q ss_pred eEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEE--EEecCCCCHHHHHHhhh
Q 032030 92 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF--AQVGWVIGIIFTLSITH 144 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~--tSa~~g~gi~~l~~~~~ 144 (148)
-+|.|||.|.-++ ++++.++++.++.. .++.. .=++.|+|-.++-+.+.
T Consensus 375 vVVAINKFd~DTe--~Ei~~I~~~c~e~G--v~va~~~~~~~Gg~Gai~LA~aVv 425 (557)
T PRK13505 375 VVVAINKFVTDTD--AEIAALKELCEELG--VEVALSEVWAKGGEGGVELAEKVV 425 (557)
T ss_pred EEEEEeCCCCCCH--HHHHHHHHHHHHcC--CCEEEecccccCCcchHHHHHHHH
Confidence 7999999999888 89999999998654 34442 33455788887766553
No 365
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=61.86 E-value=10 Score=29.28 Aligned_cols=53 Identities=17% Similarity=0.089 Sum_probs=35.1
Q ss_pred CCcceeeEEEEecCCCCCchhh-hHHH-------------HHHHHHhcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 86 PGITQADLLVINKTDLASAIGA-DLAV-------------MERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 86 ~qi~~ADivViNK~DL~~~~~~-~l~~-------------~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
+..+ -++|.+|.||-+. . .+++ -.+..+++.. +..+.+||++..|+.+.|+.-
T Consensus 108 p~vp--iiLVGtk~DLr~d--~~~~~~l~~~~~~~Vt~~~g~~lA~~iga-~~y~EcSa~tq~~v~~vF~~a 174 (198)
T KOG0393|consen 108 PNVP--IILVGTKADLRDD--PSTLEKLQRQGLEPVTYEQGLELAKEIGA-VKYLECSALTQKGVKEVFDEA 174 (198)
T ss_pred CCCC--EEEEeehHHhhhC--HHHHHHHHhccCCcccHHHHHHHHHHhCc-ceeeeehhhhhCCcHHHHHHH
Confidence 3455 7999999999854 2 1111 2222233222 577899999999999999754
No 366
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.06 E-value=5.5 Score=30.31 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=45.5
Q ss_pred cCceEEEEEeCCCCCCccc-cC-------CCCccee-eEEEEecCCCCCchhhhHHHHHHHH------Hh-----cC---
Q 032030 64 LADYIIYIIDVSGGDKIPR-KG-------GPGITQA-DLLVINKTDLASAIGADLAVMERDA------LR-----MR--- 120 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~-~~-------~~qi~~A-DivViNK~DL~~~~~~~l~~~~~~i------~~-----~n--- 120 (148)
.+|.++++||+...+..+. +. -+.++.+ -+++.||+|...+ ..-+++.... -. ..
T Consensus 87 ~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~l~l~~~t~~~~~v~~~~~~ 164 (193)
T KOG0077|consen 87 QVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFHLGLSNFTTGKGKVNLTDSN 164 (193)
T ss_pred hhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHHHHHHHHhcccccccccCCC
Confidence 4577799999876654321 10 0122222 5889999999776 3222222111 10 11
Q ss_pred -CCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 121 -DGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 121 -p~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
...+++.+|...+.|-.+-|.|+..+
T Consensus 165 ~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 165 VRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CCeEEEEEEEEEccCccceeeeehhhh
Confidence 12466778888788877767666543
No 367
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=58.61 E-value=11 Score=34.62 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=35.3
Q ss_pred cCceEEEEEeCCCCCCccc----cCCCCcceeeEEEEecCCCC------CchhhhHHHHHHHHHhcC
Q 032030 64 LADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLA------SAIGADLAVMERDALRMR 120 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~----~~~~qi~~ADivViNK~DL~------~~~~~~l~~~~~~i~~~n 120 (148)
..|.++.++|+.+|-.+.. +...|=..|-.+|+||+|++ ++. ...-++...+..+|
T Consensus 220 ~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~-DAY~KLrHii~~iN 285 (971)
T KOG0468|consen 220 LSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPM-DAYYKLRHIIDEIN 285 (971)
T ss_pred hcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChH-HHHHHHHHHHHHhc
Confidence 4688899999998865421 22234455689999999952 221 22235666666666
No 368
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=58.29 E-value=45 Score=22.47 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=32.7
Q ss_pred cceeeEEEEecCCCCCchhhhHHHHHHHHHhcC-CCCcEEEEEecCCCCHHHHHHh
Q 032030 88 ITQADLLVINKTDLASAIGADLAVMERDALRMR-DGGPFIFAQVGWVIGIIFTLSI 142 (148)
Q Consensus 88 i~~ADivViNK~DL~~~~~~~l~~~~~~i~~~n-p~a~vi~tSa~~g~gi~~l~~~ 142 (148)
.+.||++++|=+=-......+.-.....+++.+ |++.|+-+=..-...-+++.+.
T Consensus 34 ~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~~~l~~~ 89 (98)
T PF00919_consen 34 PEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYGEELKKE 89 (98)
T ss_pred cccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccChHHHHhh
Confidence 367899999987766651122222333344455 8888887766554444555544
No 369
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=57.75 E-value=20 Score=28.17 Aligned_cols=76 Identities=20% Similarity=0.221 Sum_probs=40.6
Q ss_pred cCceEEEEEeCCCCCC----------c--cccCCCCcceeeEEEEecCCCCCchhhhHH--------HHHHHHHhcCCC-
Q 032030 64 LADYIIYIIDVSGGDK----------I--PRKGGPGITQADLLVINKTDLASAIGADLA--------VMERDALRMRDG- 122 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~----------~--~~~~~~qi~~ADivViNK~DL~~~~~~~l~--------~~~~~i~~~np~- 122 (148)
.++.+|+|+|+...+. + ...+.+.+. -.+++.|+|+.++ +..+ ++.+.+...+++
T Consensus 76 ~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~--v~vfiHK~D~l~~--~~r~~~~~~~~~~i~~~~~~~~~~~ 151 (232)
T PF04670_consen 76 NVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIK--VFVFIHKMDLLSE--DEREEIFRDIQQRIRDELEDLGIED 151 (232)
T ss_dssp TESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-E--EEEEEE-CCCS-H--HHHHHHHHHHHHHHHHHHHHTT-TS
T ss_pred ccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCe--EEEEEeecccCCH--HHHHHHHHHHHHHHHHHhhhccccc
Confidence 3566799999974331 0 011234555 6899999999986 4332 233444433333
Q ss_pred CcEEEEEecCCCCHHHHHHhhh
Q 032030 123 GPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 123 a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..++.||-. ...+-+=|..+.
T Consensus 152 ~~~~~TSI~-D~Sly~A~S~Iv 172 (232)
T PF04670_consen 152 ITFFLTSIW-DESLYEAWSKIV 172 (232)
T ss_dssp EEEEEE-TT-STHHHHHHHHHH
T ss_pred eEEEeccCc-CcHHHHHHHHHH
Confidence 677888865 456655444443
No 370
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=56.14 E-value=15 Score=29.04 Aligned_cols=94 Identities=12% Similarity=0.098 Sum_probs=50.4
Q ss_pred cCCCEEEEecCCceee-eeeccccCceEEEEEeCCCCCC---------c---cccCCCCcceeeEEEEecCCCCCchhhh
Q 032030 42 FKADLLLCESGGDNLA-ANFSRELADYIIYIIDVSGGDK---------I---PRKGGPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~-~~~~~~~~d~~i~vvDa~~~~~---------~---~~~~~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
.+||+|||.+-|.+-. ....-..+|+++.-.-.+..+. + .......+++ .|++|++.-...
T Consensus 82 ~~~d~VlvDleG~as~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~--~Vl~Tr~~~~~~---- 155 (231)
T PF07015_consen 82 SGFDFVLVDLEGGASELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPA--AVLFTRVPAARL---- 155 (231)
T ss_pred cCCCEEEEeCCCCCchhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCe--eEEEecCCcchh----
Confidence 4699999999996542 1111124566554333332221 1 1123457886 599999873322
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHh
Q 032030 109 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 142 (148)
Q Consensus 109 l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~ 142 (148)
.+....+++.....|++.++-.+.....++++.
T Consensus 156 -~~~~~~~~e~~~~lpvl~t~l~eR~Af~~m~~~ 188 (231)
T PF07015_consen 156 -TRAQRIISEQLESLPVLDTELHERDAFRAMFSR 188 (231)
T ss_pred -hHHHHHHHHHHhcCCccccccccHHHHHHHHHh
Confidence 222222222223478888887766666666653
No 371
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=55.19 E-value=17 Score=33.21 Aligned_cols=59 Identities=17% Similarity=0.054 Sum_probs=37.9
Q ss_pred CCCEEEEecCCceee--eee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCC
Q 032030 43 KADLLLCESGGDNLA--ANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLAS 103 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~ 103 (148)
++.+.++-|.|.... ... .-..+|..++|+|+..+...+. .....++ -++++||+|+..
T Consensus 85 ~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p--~ivviNKiD~~~ 152 (720)
T TIGR00490 85 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVK--PVLFINKVDRLI 152 (720)
T ss_pred ceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCC--EEEEEEChhccc
Confidence 577889999997431 000 1135799999999987643211 1123455 379999999864
No 372
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=55.18 E-value=15 Score=26.73 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=22.0
Q ss_pred cCCCeeeeeccc-hhhchHHHHHhhhhc-CCCEEEEecCCc
Q 032030 16 TGGCPHAAIRED-ISINLGPLEELSNLF-KADLLLCESGGD 54 (148)
Q Consensus 16 ~nGcicc~i~~d-l~~~~~al~~l~~~~-~~D~IliEtsG~ 54 (148)
.+||.||.+... ... .+.++.... .+|+|+||+-+.
T Consensus 63 ~~~~~~~~~~~~~~~~---~l~~ll~~~~~~D~vlVEG~k~ 100 (155)
T TIGR00176 63 ASSRRYAFMHETQEER---DLEALLDRLPDLDIILVEGFKD 100 (155)
T ss_pred ecCCeEEEEEecCCCc---CHHHHHhhCCCCCEEEECCCCC
Confidence 578888876532 111 233333322 489999999884
No 373
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=54.19 E-value=24 Score=29.96 Aligned_cols=87 Identities=9% Similarity=0.016 Sum_probs=49.8
Q ss_pred cCCCEEEEecCCceeee--e------e-ccccCc-eEEEEEeCCCCCCccccCCCCcc--eeeEEEEecCCCCCchhhhH
Q 032030 42 FKADLLLCESGGDNLAA--N------F-SRELAD-YIIYIIDVSGGDKIPRKGGPGIT--QADLLVINKTDLASAIGADL 109 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~~--~------~-~~~~~d-~~i~vvDa~~~~~~~~~~~~qi~--~ADivViNK~DL~~~~~~~l 109 (148)
.++|+|+|-|.|-.... . + .....+ ..+.|+|++.+.......-.++. ..+-++++|.|-....+.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~G~-- 330 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGN-- 330 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcchH--
Confidence 47999999999976311 0 1 111112 46788998776332110001111 136999999998776333
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCH
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGI 136 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi 136 (148)
+...+.. -+.|+..++. |+++
T Consensus 331 --~l~~~~~--~~~Pi~yit~--Gq~v 351 (388)
T PRK12723 331 --LISLIYE--MRKEVSYVTD--GQIV 351 (388)
T ss_pred --HHHHHHH--HCCCEEEEeC--CCCC
Confidence 3333332 3467777774 6766
No 374
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.54 E-value=23 Score=23.48 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=34.9
Q ss_pred CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 84 GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 84 ~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
.+.++..||+||+- +|.++. .....+++..++.+ .|++.+. +.|+..+.+.+
T Consensus 42 l~~~i~~aD~VIv~-t~~vsH--~~~~~vk~~akk~~--ip~~~~~---~~~~~~l~~~l 93 (97)
T PF10087_consen 42 LPSKIKKADLVIVF-TDYVSH--NAMWKVKKAAKKYG--IPIIYSR---SRGVSSLERAL 93 (97)
T ss_pred HHHhcCCCCEEEEE-eCCcCh--HHHHHHHHHHHHcC--CcEEEEC---CCCHHHHHHHH
Confidence 34567778887777 788888 77777888777544 5766664 45666665543
No 375
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=50.28 E-value=24 Score=28.04 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=22.2
Q ss_pred CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 120 RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 120 np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+.-.||+..||.++.|+.+|++.+.-
T Consensus 237 ~~~~Pv~~gsa~~~~Gv~~Lld~i~~ 262 (267)
T cd04169 237 GELTPVFFGSALNNFGVQELLDALVD 262 (267)
T ss_pred CCEEEEEecccccCcCHHHHHHHHHH
Confidence 34569999999999999999998754
No 376
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=50.00 E-value=39 Score=29.01 Aligned_cols=86 Identities=10% Similarity=0.144 Sum_probs=44.7
Q ss_pred CCCEEEEecCCceee--------eeeccccCce-EEEEEeCCCC-CCccccCC--CCcceeeEEEEecCCCCCchhhhHH
Q 032030 43 KADLLLCESGGDNLA--------ANFSRELADY-IIYIIDVSGG-DKIPRKGG--PGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--------~~~~~~~~d~-~i~vvDa~~~-~~~~~~~~--~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
..|+|||.|.|.... ..+.+...+. ...|++++.- .++...+. ..++. +-++++|.|-.+..+.
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i-~~~I~TKlDET~s~G~--- 356 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPI-DGLIFTKLDETTSLGN--- 356 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCc-ceeEEEcccccCchhH---
Confidence 569999999998631 1121122222 3445665433 22111100 11221 4788999998876444
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHH
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGII 137 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~ 137 (148)
+...+.+ .+.||..++- |..+.
T Consensus 357 -~~s~~~e--~~~PV~YvT~--GQ~VP 378 (407)
T COG1419 357 -LFSLMYE--TRLPVSYVTN--GQRVP 378 (407)
T ss_pred -HHHHHHH--hCCCeEEEeC--CCCCC
Confidence 3333332 3357777773 55553
No 377
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=49.58 E-value=26 Score=29.71 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=26.8
Q ss_pred eEEEEecCCCCCchhhh---HHHHHHHHHhcCCCCcEEEEEecC
Q 032030 92 DLLVINKTDLASAIGAD---LAVMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 92 DivViNK~DL~~~~~~~---l~~~~~~i~~~np~a~vi~tSa~~ 132 (148)
-+++.||.|.... .. ++++++..+..+ ++++++||.-
T Consensus 209 ~lyvaN~~e~~~~--~~n~~~~~i~~~~~~~~--~~vV~~sA~~ 248 (372)
T COG0012 209 MLYVANVSEDDLA--NLNEYVKRLKELAAKEN--AEVVPVSAAI 248 (372)
T ss_pred eEEEEECCccccc--chhHHHHHHHHHhhhcC--CcEEEeeHHH
Confidence 6899999998765 32 566666665433 7899999974
No 378
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=49.28 E-value=9.9 Score=31.15 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=31.9
Q ss_pred eEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHh
Q 032030 92 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 142 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~ 142 (148)
-+.++||+|-.+- ++++-+ -.+|++ +++||.++-+++++++.
T Consensus 234 ~iyvLNkIdsISi--EELdii-----~~ipha--vpISA~~~wn~d~lL~~ 275 (358)
T KOG1487|consen 234 CIYVLNKIDSISI--EELDII-----YTIPHA--VPISAHTGWNFDKLLEK 275 (358)
T ss_pred eeeeecccceeee--ecccee-----eeccce--eecccccccchHHHHHH
Confidence 5899999998876 554422 226776 79999999999988764
No 379
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=48.99 E-value=21 Score=27.28 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=30.8
Q ss_pred CCCChhhhhhhhhcCCC-e-eeeeccchhhchHHHHHhhhhcCCCEEEEecCCc
Q 032030 3 NGALPEERIRAVETGGC-P-HAAIREDISINLGPLEELSNLFKADLLLCESGGD 54 (148)
Q Consensus 3 ~~~~~~~~~~~~~~nGc-i-cc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~ 54 (148)
||...++++.+.-.+|. + ...+.+|.....+++.++++..++|+|+ |||-
T Consensus 24 ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlII--TTGG 75 (193)
T PRK09417 24 GIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVL--TTGG 75 (193)
T ss_pred hHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEE--ECCC
Confidence 55566677766422343 2 3456787766556776665445799888 6664
No 380
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=47.80 E-value=37 Score=22.30 Aligned_cols=34 Identities=3% Similarity=-0.010 Sum_probs=25.5
Q ss_pred HHHHHHHH-hcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDAL-RMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~-~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.+.+.+. +...+++.+.+|+ ++..+++|++++.
T Consensus 23 ~~L~~ai~~~FG~~arFhTCSa-e~m~a~eLv~FL~ 57 (78)
T PF10678_consen 23 EELKAAIIEKFGEDARFHTCSA-EGMTADELVDFLE 57 (78)
T ss_pred HHHHHHHHHHhCCCceEEecCC-CCCCHHHHHHHHH
Confidence 44555554 4457889999998 4999999998764
No 381
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=44.75 E-value=49 Score=27.12 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=29.3
Q ss_pred EEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 93 LLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 93 ivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+-|-||+|-++- ++.+++ .| .|+.-|+.+. -..|++.|++.+-
T Consensus 242 lYvYnKID~vs~--eevdrl---Ar--~PnsvViSC~--m~lnld~lle~iW 284 (364)
T KOG1486|consen 242 LYVYNKIDQVSI--EEVDRL---AR--QPNSVVISCN--MKLNLDRLLERIW 284 (364)
T ss_pred EEEeeccceecH--HHHHHH---hc--CCCcEEEEec--cccCHHHHHHHHH
Confidence 668999999887 665554 34 5767555444 4688888776543
No 382
>PTZ00258 GTP-binding protein; Provisional
Probab=44.15 E-value=35 Score=29.01 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=27.1
Q ss_pred eEEEEecC--CCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 032030 92 DLLVINKT--DLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI 134 (148)
Q Consensus 92 DivViNK~--DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~ 134 (148)
-++|+||. |+...-...++++.+.+.+.. ..+++++||+-..
T Consensus 223 ~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~-~~~~v~~sa~~E~ 266 (390)
T PTZ00258 223 MIYLVNMSEKDFIRQKNKWLAKIKEWVGEKG-GGPIIPYSAEFEE 266 (390)
T ss_pred EEEEEECchhhhcccchHHHHHHHHHHHhcC-CCeEEEeeHHHHH
Confidence 37999999 873221145566666665422 4789999986543
No 383
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=42.35 E-value=40 Score=26.93 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=32.0
Q ss_pred CCCCChhhhhhhh-h-cCCCeeeeec--cchhhchHHHHHhhhhcCCCEEEEecCCce
Q 032030 2 RNGALPEERIRAV-E-TGGCPHAAIR--EDISINLGPLEELSNLFKADLLLCESGGDN 55 (148)
Q Consensus 2 ~~~~~~~~~~~~~-~-~nGcicc~i~--~dl~~~~~al~~l~~~~~~D~IliEtsG~~ 55 (148)
.+|.+|-++++++ + ..|..|-+=| |...+...++.+|.+ .++|.|+ |||-.
T Consensus 97 ~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~-lG~~rIL--TSGg~ 151 (248)
T PRK11572 97 VDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLAD-LGVARIL--TSGQQ 151 (248)
T ss_pred CCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHH-cCCCEEE--CCCCC
Confidence 4789999999862 2 2344443322 222233566766654 4899999 99974
No 384
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=42.26 E-value=12 Score=22.47 Aligned_cols=9 Identities=44% Similarity=0.899 Sum_probs=6.8
Q ss_pred hhcCCCeee
Q 032030 14 VETGGCPHA 22 (148)
Q Consensus 14 ~~~nGcicc 22 (148)
.+.+||+||
T Consensus 21 vapggcccc 29 (56)
T TIGR03602 21 VAPGGCCCC 29 (56)
T ss_pred ecCCCeEEE
Confidence 567888876
No 385
>PLN00023 GTP-binding protein; Provisional
Probab=41.29 E-value=31 Score=28.78 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=11.1
Q ss_pred eEEEEecCCCCCc
Q 032030 92 DLLVINKTDLASA 104 (148)
Q Consensus 92 DivViNK~DL~~~ 104 (148)
-+||.||+||...
T Consensus 154 IILVGNK~DL~~~ 166 (334)
T PLN00023 154 YIVIGNKADIAPK 166 (334)
T ss_pred EEEEEECcccccc
Confidence 5899999999764
No 386
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=40.96 E-value=1.2e+02 Score=22.91 Aligned_cols=68 Identities=10% Similarity=-0.054 Sum_probs=34.4
Q ss_pred HHHHhhhhcCCCEEEEecCCceee------eeeccccCceEEEEEeCCCCCC--c---cc-cCCCCcceeeEEEEecCCC
Q 032030 34 PLEELSNLFKADLLLCESGGDNLA------ANFSRELADYIIYIIDVSGGDK--I---PR-KGGPGITQADLLVINKTDL 101 (148)
Q Consensus 34 al~~l~~~~~~D~IliEtsG~~~~------~~~~~~~~d~~i~vvDa~~~~~--~---~~-~~~~qi~~ADivViNK~DL 101 (148)
.+.+..+...||+|++-+.-.... +.+.....|.++.|+.+..... . .. .....++ -.-+|+||+..
T Consensus 104 ~l~~~l~~~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~-~~glVlN~~~~ 182 (217)
T cd02035 104 AVFREFSEGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIP-VDAVVVNRVLP 182 (217)
T ss_pred HHHHHHhcCCCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCC-CCEEEEeCCcC
Confidence 343333333499999999754211 1111123467788887654321 0 00 0011122 12699999875
Q ss_pred C
Q 032030 102 A 102 (148)
Q Consensus 102 ~ 102 (148)
.
T Consensus 183 ~ 183 (217)
T cd02035 183 A 183 (217)
T ss_pred c
Confidence 4
No 387
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=40.40 E-value=65 Score=28.04 Aligned_cols=50 Identities=10% Similarity=-0.078 Sum_probs=33.4
Q ss_pred eEEEEecCCCCCc------hhhhHHHHHHHHH--hcC--CCCcEEEEEecCCCCHHHHHH
Q 032030 92 DLLVINKTDLASA------IGADLAVMERDAL--RMR--DGGPFIFAQVGWVIGIIFTLS 141 (148)
Q Consensus 92 DivViNK~DL~~~------~~~~l~~~~~~i~--~~n--p~a~vi~tSa~~g~gi~~l~~ 141 (148)
=++++||.|=.+. .++-.+++..+++ ..| ++...+++|..+|.++.+..+
T Consensus 220 lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 220 LIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred EEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 5899999995432 1122245666666 233 556778899999999987653
No 388
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=39.96 E-value=48 Score=28.98 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=32.5
Q ss_pred CcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEec--CCCCHHHHHHhhhh
Q 032030 87 GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVG--WVIGIIFTLSITHY 145 (148)
Q Consensus 87 qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~--~g~gi~~l~~~~~~ 145 (148)
..| =++|+||+|-.++ + -..+.+.+++... .|++++|.. +...+..+++.+.|
T Consensus 180 ~kP--fiivlN~~dp~~~--e-t~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 180 NKP--FIILLNSTHPYHP--E-TEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred CCC--EEEEEECcCCCCc--h-hHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHHh
Confidence 455 5899999994433 3 2233344443333 677787764 34567777777776
No 389
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=39.79 E-value=1.2e+02 Score=25.66 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=24.1
Q ss_pred cCceEEEEEeCCCCCCcccc------C------------CCCc-ceeeEEEEecCCC
Q 032030 64 LADYIIYIIDVSGGDKIPRK------G------------GPGI-TQADLLVINKTDL 101 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~~------~------------~~qi-~~ADivViNK~DL 101 (148)
.++.++++++-++.+..... + .+-+ ..+-++.+||.||
T Consensus 218 ~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 218 DVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 46777999988877653210 0 0112 3446899999998
No 390
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=39.46 E-value=26 Score=29.06 Aligned_cols=36 Identities=31% Similarity=0.340 Sum_probs=27.3
Q ss_pred hcCCCeeeeeccchhhchHHHHHhhhhcCCCEEEEecCCcee
Q 032030 15 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL 56 (148)
Q Consensus 15 ~~nGcicc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~~~ 56 (148)
..++.+|- |++++-+.|..+.. +-|.++||.-|=++
T Consensus 277 ~G~~~pci----DlrrvsqeLa~l~~--daDLVViEGMGRal 312 (348)
T KOG4584|consen 277 NGQDSPCI----DLRRVSQELAYLSS--DADLVVIEGMGRAL 312 (348)
T ss_pred cCCCCcee----eHHhhhHHHHHHhc--CCCEEEEeccchhh
Confidence 34455687 88887777777654 79999999999764
No 391
>PF14972 Mito_morph_reg: Mitochondrial morphogenesis regulator
Probab=39.11 E-value=30 Score=25.93 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=15.2
Q ss_pred HHHHhhhhcCCCEEEEecCCce
Q 032030 34 PLEELSNLFKADLLLCESGGDN 55 (148)
Q Consensus 34 al~~l~~~~~~D~IliEtsG~~ 55 (148)
+|.+.++ .++++|+||++.++
T Consensus 23 eLe~ALe-~~~~~IVIEP~~LG 43 (165)
T PF14972_consen 23 ELERALE-AKVSYIVIEPTRLG 43 (165)
T ss_pred HHHHHHH-hCCCEEEECCcccc
Confidence 3444333 58999999999875
No 392
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=38.56 E-value=17 Score=30.46 Aligned_cols=43 Identities=26% Similarity=0.463 Sum_probs=26.8
Q ss_pred CChhhhhhhhhcCCCe-eeeeccchhhchHHHHHhhhhcCCCEEEEecCCc
Q 032030 5 ALPEERIRAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGD 54 (148)
Q Consensus 5 ~~~~~~~~~~~~nGci-cc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~ 54 (148)
+++.++++-+..-||+ |++-+.++. .++ +|++ +.|+|+ =|-|.
T Consensus 50 slLPeNi~~i~GPGCPVCVtp~~~id---~ai-ela~--~~~~i~-~TfGD 93 (364)
T COG0409 50 SLLPENVEFIHGPGCPVCVTPMGRID---TAI-ELAS--SKDVIF-CTFGD 93 (364)
T ss_pred hhCccceEEecCCCCCeEeeEHHHHH---HHH-HHhC--CCCcEE-Eeccc
Confidence 4667788888899999 777766662 233 4542 455555 24443
No 393
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=38.34 E-value=1.5e+02 Score=24.47 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=14.7
Q ss_pred EEEEEecCCCCHHHHHHhhh
Q 032030 125 FIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 125 vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+.|+|..-.++..+++.+.
T Consensus 311 ~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 311 HHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred EEEeeecccHHHHHHHHHHH
Confidence 35688887788888887654
No 394
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=35.85 E-value=70 Score=24.24 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=12.7
Q ss_pred CcceeeEEEEecCCCCCc
Q 032030 87 GITQADLLVINKTDLASA 104 (148)
Q Consensus 87 qi~~ADivViNK~DL~~~ 104 (148)
++| -++|.||+||.++
T Consensus 129 ~~P--iilVGnK~Dl~~~ 144 (202)
T cd04102 129 QIP--LLVIGTKLDQIPE 144 (202)
T ss_pred Cce--EEEEEECccchhh
Confidence 455 6899999999764
No 395
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=35.67 E-value=18 Score=26.98 Aligned_cols=100 Identities=18% Similarity=0.073 Sum_probs=55.1
Q ss_pred cCCCEEEEecCCceee--------eeec------cccCceEEEEEeCCCCC---Cccc----cCC-CC-cceeeEEEEec
Q 032030 42 FKADLLLCESGGDNLA--------ANFS------RELADYIIYIIDVSGGD---KIPR----KGG-PG-ITQADLLVINK 98 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~--------~~~~------~~~~d~~i~vvDa~~~~---~~~~----~~~-~q-i~~ADivViNK 98 (148)
.+|...=+|.-|--.. ..+. -+..|.+|+|+|..... +... ... .. -+.+.++.-||
T Consensus 49 ~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfank 128 (185)
T KOG0074|consen 49 NGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANK 128 (185)
T ss_pred CCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhh
Confidence 4677778888773210 0010 13457779999965421 1110 111 11 23347888899
Q ss_pred CCCCCchhhhHHHHHHHH--HhcC-CCCcEEEEEecCCCCHHHHHHhh
Q 032030 99 TDLASAIGADLAVMERDA--LRMR-DGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 99 ~DL~~~~~~~l~~~~~~i--~~~n-p~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
-||+.+ +..+.+...+ ..+. ..-.|-.+||.+++|...=.+|+
T Consensus 129 Qdllta--a~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv 174 (185)
T KOG0074|consen 129 QDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWV 174 (185)
T ss_pred hHHHhh--cchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhh
Confidence 999887 5444433222 1111 12366789999998876544444
No 396
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=35.15 E-value=74 Score=20.86 Aligned_cols=34 Identities=6% Similarity=-0.026 Sum_probs=25.1
Q ss_pred HHHHHHHH-hcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDAL-RMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~-~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.+++.+. +....++...+|+. +..+++|++++.
T Consensus 21 ~~L~~~i~~~FG~~arFhTCSa~-~m~a~~Li~FL~ 55 (77)
T TIGR03853 21 ESLKAAIEQKFGEDARFHTCSAE-GMTADELLQFLL 55 (77)
T ss_pred HHHHHHHHHHhCCCceEeecccc-cCCHHHHHHHHH
Confidence 34555554 44577899999985 999999998764
No 397
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=34.89 E-value=1.4e+02 Score=26.17 Aligned_cols=85 Identities=11% Similarity=0.058 Sum_probs=47.9
Q ss_pred cCCCEEEEecCCceee--------eeeccc-cCceEEEEEeCCCCCC-cc---ccCCCCcceeeEEEEecCCCCCchhhh
Q 032030 42 FKADLLLCESGGDNLA--------ANFSRE-LADYIIYIIDVSGGDK-IP---RKGGPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~--------~~~~~~-~~d~~i~vvDa~~~~~-~~---~~~~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
.+.|+++|.|.|...- ..+... .-...+.|+|+..+.. +. ..+...- -+-+++||.|-....+
T Consensus 333 ~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~~~--~~g~IlTKlDet~~~G-- 408 (484)
T PRK06995 333 RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRGPG--LAGCILTKLDEAASLG-- 408 (484)
T ss_pred cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhccCC--CCEEEEeCCCCcccch--
Confidence 4679999999996531 111111 1122578889875532 11 1122211 2588999999876533
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCCCH
Q 032030 109 LAVMERDALRMRDGGPFIFAQVGWVIGI 136 (148)
Q Consensus 109 l~~~~~~i~~~np~a~vi~tSa~~g~gi 136 (148)
.+...+.+ -+.|+.+++ +|+++
T Consensus 409 --~~l~i~~~--~~lPI~yvt--~GQ~V 430 (484)
T PRK06995 409 --GALDVVIR--YKLPLHYVS--NGQRV 430 (484)
T ss_pred --HHHHHHHH--HCCCeEEEe--cCCCC
Confidence 34444432 346888887 46777
No 398
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=34.38 E-value=18 Score=26.29 Aligned_cols=36 Identities=3% Similarity=-0.087 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhcCCC--CcEEEEEecCCCCHHHHHHhh
Q 032030 107 ADLAVMERDALRMRDG--GPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~--a~vi~tSa~~g~gi~~l~~~~ 143 (148)
...+++.+++++ ||+ |.+..++..||+..+.+..|+
T Consensus 30 ~~f~kV~~yLr~-~p~~~ati~eV~e~tgVs~~~I~~~I 67 (137)
T TIGR03826 30 REFEKVYKFLRK-HENRQATVSEIVEETGVSEKLILKFI 67 (137)
T ss_pred HHHHHHHHHHHH-CCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 555788889984 777 999999999999999888765
No 399
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=34.24 E-value=16 Score=32.71 Aligned_cols=48 Identities=15% Similarity=-0.013 Sum_probs=31.2
Q ss_pred eEEEEecCCCCCchhhhHHH----HHHHHHhcCCCCcEEEEEecCCCCHHHHHHh
Q 032030 92 DLLVINKTDLASAIGADLAV----MERDALRMRDGGPFIFAQVGWVIGIIFTLSI 142 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~----~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~ 142 (148)
-|+|.||+|+.+.-...++. +....+++- .-+.+||++-.++.++|-+
T Consensus 118 VILvGNK~d~~~~~~~s~e~~~~pim~~f~EiE---tciecSA~~~~n~~e~fYy 169 (625)
T KOG1707|consen 118 VILVGNKSDNGDNENNSDEVNTLPIMIAFAEIE---TCIECSALTLANVSELFYY 169 (625)
T ss_pred EEEEeeccCCccccccchhHHHHHHHHHhHHHH---HHHhhhhhhhhhhHhhhhh
Confidence 89999999998762221122 222222221 3478999999999998853
No 400
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=34.11 E-value=2e+02 Score=26.47 Aligned_cols=97 Identities=12% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCCEEEEecCCceee-eeeccccC--ceEEEEEeCCCCCC------ccccCCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 43 KADLLLCESGGDNLA-ANFSRELA--DYIIYIIDVSGGDK------IPRKGGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~~~~~~--d~~i~vvDa~~~~~------~~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
.+-+-+|.|.|-... -...+.+. |-.|.|+|+..|-+ +.+..+-.+| -+..+||.|.... .-...+.
T Consensus 103 ~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP--~i~FiNKmDRmGa--~~~~~l~ 178 (721)
T KOG0465|consen 103 DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVP--RICFINKMDRMGA--SPFRTLN 178 (721)
T ss_pred cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCC--eEEEEehhhhcCC--ChHHHHH
Q ss_pred HHHHhcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 114 RDALRMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 114 ~~i~~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
....++++.+.++..-.+......-+++.+
T Consensus 179 ~i~~kl~~~~a~vqiPig~e~~f~GvvDlv 208 (721)
T KOG0465|consen 179 QIRTKLNHKPAVVQIPIGSESNFKGVVDLV 208 (721)
T ss_pred HHHhhcCCchheeEccccccccchhHHhhh
No 401
>PRK00007 elongation factor G; Reviewed
Probab=34.02 E-value=55 Score=29.75 Aligned_cols=26 Identities=12% Similarity=-0.070 Sum_probs=22.1
Q ss_pred CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 120 RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 120 np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
++..||+..||+++.|+++|++.+..
T Consensus 252 ~~~~Pv~~gSa~~~~Gv~~LLd~I~~ 277 (693)
T PRK00007 252 NEIVPVLCGSAFKNKGVQPLLDAVVD 277 (693)
T ss_pred CcEEEEEecccccCcCHHHHHHHHHH
Confidence 45678999999999999999997754
No 402
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=33.91 E-value=27 Score=24.76 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=22.3
Q ss_pred CCCEEEEecCCceee--------eeeccccCceEEEEEeCCCCC
Q 032030 43 KADLLLCESGGDNLA--------ANFSRELADYIIYIIDVSGGD 78 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--------~~~~~~~~d~~i~vvDa~~~~ 78 (148)
..++.||.|.|..-. ..+. ..+|.+++|+++.+..
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~-~~~d~vi~V~~~~~~~ 142 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYL-PKADVVIFVVDANQDL 142 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHH-STTEEEEEEEETTSTG
T ss_pred ccceEEEeCCccccchhhhHHHHHHhh-ccCCEEEEEeccCccc
Confidence 456778888886321 1111 4578889999987753
No 403
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=33.25 E-value=2.1e+02 Score=23.04 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=21.9
Q ss_pred cCCCEEEEecCCceee----eeeccccCceEEEEEeCC
Q 032030 42 FKADLLLCESGGDNLA----ANFSRELADYIIYIIDVS 75 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~----~~~~~~~~d~~i~vvDa~ 75 (148)
..||+|+|-+.|...+ ..+....+|.++.++.+.
T Consensus 121 ~~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e 158 (296)
T TIGR02016 121 WDFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSND 158 (296)
T ss_pred ccCCEEEEecCCCccccccccchhhhhCCeEEEEecch
Confidence 3799999998775322 111123578888888764
No 404
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=32.81 E-value=42 Score=29.59 Aligned_cols=27 Identities=15% Similarity=0.011 Sum_probs=22.5
Q ss_pred CCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 120 RDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 120 np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
+.-.||+..||.++.|+.+|++.+.-.
T Consensus 247 ~~~~PV~~GSA~~n~Gv~~LLd~i~~~ 273 (527)
T TIGR00503 247 GEMTPVFFGTALGNFGVDHFLDGLLQW 273 (527)
T ss_pred CCeeEEEEeecccCccHHHHHHHHHHH
Confidence 345699999999999999999987543
No 405
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=32.42 E-value=36 Score=25.77 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=32.3
Q ss_pred CCCCChhhhhhhhhcCCCeeeeeccchhhchHHHHHhhhhcCCCEEEEecCC
Q 032030 2 RNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGG 53 (148)
Q Consensus 2 ~~~~~~~~~~~~~~~nGcicc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG 53 (148)
-|++|-+..+|-++.+|--.--+ ...+|| +++++.+.|++.|=+..
T Consensus 12 iN~~Ir~~evrlIg~~GeqlGiv-----~~~eAL-~lA~e~~LDLV~Ispna 57 (176)
T COG0290 12 INEEIRAREVRLIGEDGEQLGIV-----SIEEAL-KLAEEAGLDLVEISPNA 57 (176)
T ss_pred ccccccccEEEEECCCCcEEcce-----eHHHHH-HHHHHcCCCEEEECCCC
Confidence 37888888888888888776433 113444 57788899998875554
No 406
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=32.34 E-value=93 Score=24.70 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=41.6
Q ss_pred HHHHHhhhhcCCCEEEEecCCceee--eeeccccCceEEEEEeCCCCCCccccCCCCcceeeEEEEecCCCCCchhhhH
Q 032030 33 GPLEELSNLFKADLLLCESGGDNLA--ANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 33 ~al~~l~~~~~~D~IliEtsG~~~~--~~~~~~~~d~~i~vvDa~~~~~~~~~~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+.++....++|+|++.+.=-..+ ... -..+|.+++|+-+.-.... ...+..++....+|+|+.|-.+++..++
T Consensus 107 ~~l~~l~~~~~~~~iliD~P~g~~~~~~~a-l~~aD~vL~V~~~Da~s~~-~L~q~~l~~~~~~liNq~~~~s~l~~D~ 183 (243)
T PF06564_consen 107 RALAALKALGPYDWILIDTPPGPSPYTRQA-LAAADLVLVVVNPDAASHA-RLHQRALPAGHRFLINQYDPASQLQRDL 183 (243)
T ss_pred HHHHHHhccCCCCEEEEeCCCCCcHHHHHH-HHhCCeEEEEeCCCHHHHH-HHHHhcccCCcEEEEeccCccchHHHHH
Confidence 3454444345789999987642211 111 1357888887765322111 1111123445699999999888744443
No 407
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=31.87 E-value=51 Score=24.24 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=26.9
Q ss_pred CCCChhhhhhhhhcCCCeee---eeccchhhchHHHHHhhhhcCCCEEEEecCCc
Q 032030 3 NGALPEERIRAVETGGCPHA---AIREDISINLGPLEELSNLFKADLLLCESGGD 54 (148)
Q Consensus 3 ~~~~~~~~~~~~~~nGcicc---~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~ 54 (148)
||...+..+.+ .||..- .+.+|.....+++.++.+..+.|+|+ +||-
T Consensus 23 n~~~l~~~L~~---~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVI--ttGG 72 (163)
T TIGR02667 23 SGQYLVERLTE---AGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVIL--ITGG 72 (163)
T ss_pred cHHHHHHHHHH---CCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEE--ECCC
Confidence 44444555554 466432 44677766556666654334789888 5663
No 408
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.11 E-value=1.3e+02 Score=25.86 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=49.5
Q ss_pred cCCCEEEEecCCceee--------eeeccc-cCceEEEEEeCCCCCC-ccc---cCCCCcceeeEEEEecCCCCCchhhh
Q 032030 42 FKADLLLCESGGDNLA--------ANFSRE-LADYIIYIIDVSGGDK-IPR---KGGPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~--------~~~~~~-~~d~~i~vvDa~~~~~-~~~---~~~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
.+.|+|+|.|.|...- ..+... .....+.|+|+..... ... .+. --..+-++++|.|-....+.
T Consensus 268 ~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~--~~~~~~~I~TKlDEt~~~G~- 344 (420)
T PRK14721 268 RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ--GHGIHGCIITKVDEAASLGI- 344 (420)
T ss_pred cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc--CCCCCEEEEEeeeCCCCccH-
Confidence 4789999999998631 112111 1234577889875432 211 111 12236899999998876443
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCCCH
Q 032030 109 LAVMERDALRMRDGGPFIFAQVGWVIGI 136 (148)
Q Consensus 109 l~~~~~~i~~~np~a~vi~tSa~~g~gi 136 (148)
+...+.+ -+.|+..++. |.++
T Consensus 345 ---~l~~~~~--~~lPi~yvt~--Gq~V 365 (420)
T PRK14721 345 ---ALDAVIR--RKLVLHYVTN--GQKV 365 (420)
T ss_pred ---HHHHHHH--hCCCEEEEEC--CCCc
Confidence 3333332 3467778774 6666
No 409
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=30.23 E-value=60 Score=27.88 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=21.5
Q ss_pred CCCEEEEecCCceeeeeec-c---ccCc--eEEEEEeCCCC
Q 032030 43 KADLLLCESGGDNLAANFS-R---ELAD--YIIYIIDVSGG 77 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~-~---~~~d--~~i~vvDa~~~ 77 (148)
+.+.|++|+.++......+ + .+++ -+++|||.+-+
T Consensus 162 ~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~ 202 (409)
T KOG0053|consen 162 NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFG 202 (409)
T ss_pred CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcC
Confidence 5899999999997532110 1 1222 24777887654
No 410
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=30.03 E-value=57 Score=24.55 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=11.4
Q ss_pred cCCCEEEEecCCc
Q 032030 42 FKADLLLCESGGD 54 (148)
Q Consensus 42 ~~~D~IliEtsG~ 54 (148)
.++|+|+||+.|-
T Consensus 102 ~~~D~viIEg~gg 114 (222)
T PRK00090 102 QQYDLVLVEGAGG 114 (222)
T ss_pred hhCCEEEEECCCc
Confidence 4799999999985
No 411
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=29.91 E-value=92 Score=26.27 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=26.2
Q ss_pred eEEEEecCCC--C-CchhhhHHHHHHHHHhcCCCCcEEEEEec
Q 032030 92 DLLVINKTDL--A-SAIGADLAVMERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 92 DivViNK~DL--~-~~~~~~l~~~~~~i~~~np~a~vi~tSa~ 131 (148)
-++|+||.|. . +. ..++++.+++.+. +.+++++||+
T Consensus 202 ~i~v~N~~e~~~~~~~--~~~~~i~~~~~~~--~~~~i~~sa~ 240 (364)
T PRK09601 202 VLYVANVDEDDLADGN--PYVKKVREIAAKE--GAEVVVICAK 240 (364)
T ss_pred eEEEEECCcccccccc--HHHHHHHHHHHHc--CCeEEEEEHH
Confidence 6899999885 2 33 5566777777652 5689999985
No 412
>PRK06524 biotin carboxylase-like protein; Validated
Probab=29.84 E-value=61 Score=28.50 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCC---CHHHHHHhhhhh
Q 032030 109 LAVMERDALRMRDGGPFIFAQVGWVI---GIIFTLSITHYI 146 (148)
Q Consensus 109 l~~~~~~i~~~np~a~vi~tSa~~g~---gi~~l~~~~~~~ 146 (148)
+..++.+.+ +...|++++|+ |.+ |+++|+.-+-||
T Consensus 19 ~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 56 (493)
T PRK06524 19 LSDIRAFFH--NNTVPLYFISP-TPFNLLGIDRWIRNFFYL 56 (493)
T ss_pred HHHHHHHHh--cCCCceEEecC-CCcccccHHHHhhceeEE
Confidence 445667777 56789999998 566 779998887776
No 413
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=29.45 E-value=43 Score=29.85 Aligned_cols=51 Identities=12% Similarity=-0.037 Sum_probs=32.8
Q ss_pred eEEEEecCCCCCchhhhHHHHHHHHHh--------------cCCC---CcEEEEEecCCCCHHHHHHhhh
Q 032030 92 DLLVINKTDLASAIGADLAVMERDALR--------------MRDG---GPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~~i~~--------------~np~---a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
-++..||+|+... ....-+.+.++. .||. ..+..+|+++|-|+++|+-.+.
T Consensus 140 ~~v~~n~vdl~p~--d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lv 207 (572)
T KOG1249|consen 140 LFVDGNKVDLLPK--DSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLV 207 (572)
T ss_pred eEeeccccccccc--cccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhh
Confidence 4899999999887 542222222222 2332 2345689999999999976553
No 414
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=29.08 E-value=78 Score=23.94 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEe
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQV 130 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa 130 (148)
+.+..+.+.+|+.+|.+||+.+|.
T Consensus 78 ~~~~~fv~~iR~~hP~tPIllv~~ 101 (178)
T PF14606_consen 78 ERLDGFVKTIREAHPDTPILLVSP 101 (178)
T ss_dssp HHHHHHHHHHHTT-SSS-EEEEE-
T ss_pred HHHHHHHHHHHHhCCCCCEEEEec
Confidence 666778899999999999999993
No 415
>PRK10037 cell division protein; Provisional
Probab=28.99 E-value=1.3e+02 Score=23.12 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=31.2
Q ss_pred cCCCEEEEecCCceeeeee-ccccCceEEEEEeCCCCCCccccCCCCcceeeEEEEecCCC
Q 032030 42 FKADLLLCESGGDNLAANF-SRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL 101 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~~~~-~~~~~d~~i~vvDa~~~~~~~~~~~~qi~~ADivViNK~DL 101 (148)
..+|+|+|.|.+..-.... .-..+|.+++++.+.....+.. .......--.+++|+.+.
T Consensus 116 ~~yD~iiIDtpp~~~~~~~~al~aaD~vlvpv~~~~~~~i~~-~~~~~~~~~~i~~n~~~~ 175 (250)
T PRK10037 116 GRYQWILLDLPRGASPLTRQLLSLCDHSLAIVNVDANCHIRL-HQQALPAGAHILINDLRI 175 (250)
T ss_pred CCCCEEEEECCCCccHHHHHHHHhCCEEEEEcCcCHHHHHhh-hccccCCCeEEEEecCCc
Confidence 4799999999886321110 0135788888887643321111 111101012467899873
No 416
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=28.73 E-value=2.2e+02 Score=21.43 Aligned_cols=61 Identities=10% Similarity=-0.034 Sum_probs=35.5
Q ss_pred ceEEEEEeCCCCCCccccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEec
Q 032030 66 DYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 66 d~~i~vvDa~~~~~~~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~ 131 (148)
..+++|.||..-+...+. ...+--=++.+|-+-.-. .-+|+....++...++--++.||-.
T Consensus 49 ~~iivVFDA~~v~g~~~~---~~~~~vsvvyT~~~ETAD--s~IEr~~~el~~~~t~~V~VaTSD~ 109 (173)
T COG3688 49 YKIIVVFDAHYVPGVGRE---YKNHRVSVVYTKEGETAD--SFIERYVAELRNAATHQVIVATSDR 109 (173)
T ss_pred ceEEEEEEcccccccccc---ccccceEEEEecCCccHH--HHHHHHHHHHhccccceEEEEeCch
Confidence 446889998765554221 111123588999987755 5566666666633443445566643
No 417
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=28.72 E-value=60 Score=22.61 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHhhhhcCCCEEEEecCCce---eeeeeccccCceEEEEEeCCCCCCccccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 34 PLEELSNLFKADLLLCESGGDN---LAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 34 al~~l~~~~~~D~IliEtsG~~---~~~~~~~~~~d~~i~vvDa~~~~~~~~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
++.+.+...+.-.|.+|++|.. +...+.. ...-+.++.+..-..... -..--+|.|..+. ..+.
T Consensus 37 ~l~~~l~~~~~~~v~~E~tg~y~~~l~~~L~~--~g~~v~~vnp~~~~~~~~---------~~~~~~KtD~~DA--~~ia 103 (144)
T PF01548_consen 37 KLLDWLASLGPVLVVMEATGGYWRPLADFLQD--AGIEVVVVNPLQVKRFRK---------SLGRRAKTDKIDA--RAIA 103 (144)
T ss_pred HHhhhhccccccccccccccccchhhhhheec--cccccccccccccccccc---------cccccccccccch--HHHH
Confidence 3333333334568999999952 2112211 223355566543322211 1125689999888 6544
Q ss_pred HH
Q 032030 111 VM 112 (148)
Q Consensus 111 ~~ 112 (148)
.+
T Consensus 104 ~~ 105 (144)
T PF01548_consen 104 RL 105 (144)
T ss_pred HH
Confidence 44
No 418
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=28.25 E-value=73 Score=22.73 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=11.3
Q ss_pred cCCCEEEEecCCc
Q 032030 42 FKADLLLCESGGD 54 (148)
Q Consensus 42 ~~~D~IliEtsG~ 54 (148)
.++|+|+||+.|-
T Consensus 98 ~~~D~viid~~g~ 110 (166)
T TIGR00347 98 QKYDFVLVEGAGG 110 (166)
T ss_pred hcCCEEEEEcCCc
Confidence 4799999999984
No 419
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=27.40 E-value=58 Score=25.52 Aligned_cols=12 Identities=50% Similarity=0.742 Sum_probs=11.2
Q ss_pred CCCEEEEecCCc
Q 032030 43 KADLLLCESGGD 54 (148)
Q Consensus 43 ~~D~IliEtsG~ 54 (148)
++|+|+||..|-
T Consensus 106 ~~d~vlVEGAGG 117 (223)
T COG0132 106 KYDLVLVEGAGG 117 (223)
T ss_pred ccCEEEEeCCCc
Confidence 899999999995
No 420
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=27.34 E-value=1.6e+02 Score=21.94 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=26.7
Q ss_pred eeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHH
Q 032030 91 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 140 (148)
Q Consensus 91 ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~ 140 (148)
+|+|.+-|. ++ +++.++.+.++..+|+..+ ..| .|.+.+.+-
T Consensus 101 ~d~I~lD~~---~~--~~~~~~v~~l~~~~~~v~i-e~S--GGI~~~ni~ 142 (169)
T PF01729_consen 101 ADIIMLDNM---SP--EDLKEAVEELRELNPRVKI-EAS--GGITLENIA 142 (169)
T ss_dssp -SEEEEES----CH--HHHHHHHHHHHHHTTTSEE-EEE--SSSSTTTHH
T ss_pred CCEEEecCc---CH--HHHHHHHHHHhhcCCcEEE-EEE--CCCCHHHHH
Confidence 577777655 56 8888998988888888543 333 345444443
No 421
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=27.32 E-value=1.3e+02 Score=23.09 Aligned_cols=10 Identities=0% Similarity=-0.446 Sum_probs=4.7
Q ss_pred CCHHHHHHhh
Q 032030 134 IGIIFTLSIT 143 (148)
Q Consensus 134 ~gi~~l~~~~ 143 (148)
.+.++|.+.+
T Consensus 112 ~~~~~L~~aI 121 (216)
T PRK10100 112 EDQERVVNGL 121 (216)
T ss_pred CCHHHHHHHH
Confidence 4455554433
No 422
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=27.26 E-value=1.1e+02 Score=24.51 Aligned_cols=50 Identities=14% Similarity=0.049 Sum_probs=34.3
Q ss_pred ceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHh
Q 032030 89 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 142 (148)
Q Consensus 89 ~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~ 142 (148)
..||-|+++=..-=.+ .+++++. .+|+..| .||+--|-.|.+|+.++++.
T Consensus 171 ~~aDaviVtG~~TG~~--~~~~~l~-~vr~~~~-~PVlvGSGvt~~Ni~~~l~~ 220 (254)
T PF03437_consen 171 GGADAVIVTGKATGEP--PDPEKLK-RVREAVP-VPVLVGSGVTPENIAEYLSY 220 (254)
T ss_pred cCCCEEEECCcccCCC--CCHHHHH-HHHhcCC-CCEEEecCCCHHHHHHHHHh
Confidence 4578888886554333 4444554 3555566 89998888888888888763
No 423
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.64 E-value=98 Score=26.61 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=30.2
Q ss_pred cceeeEEEEecCCCCCchhhhHHHH-----HHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 88 ITQADLLVINKTDLASAIGADLAVM-----ERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 88 i~~ADivViNK~DL~~~~~~~l~~~-----~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
.+.||++|+|=+=-... ++.+.. .+.+++.+|.++++-+=..-...-+++
T Consensus 55 ~~~AD~~iiNTC~v~~~--a~~~~~~~i~~~~~~k~~~p~~~ivv~GC~a~~~~~~~ 109 (459)
T PRK14338 55 PEDADFIVLNSCSVRAS--AEERILGKLGELQRLKRQRPDTRIVLWGCMVGPNNQSI 109 (459)
T ss_pred cccCCEEEEeccceeeH--HHHHHHHHHHHHHHHHhhCCCCEEEEeCCccccChhHh
Confidence 34689999998776665 433222 234567788888777544433333444
No 424
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=26.22 E-value=29 Score=29.59 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=31.2
Q ss_pred hHHHHHhhhhcCCCEEEEecCCceee---eeeccccCce--EEEEEeCCCCCCc--cccCCCCcceeeE
Q 032030 32 LGPLEELSNLFKADLLLCESGGDNLA---ANFSRELADY--IIYIIDVSGGDKI--PRKGGPGITQADL 93 (148)
Q Consensus 32 ~~al~~l~~~~~~D~IliEtsG~~~~---~~~~~~~~d~--~i~vvDa~~~~~~--~~~~~~qi~~ADi 93 (148)
.+++.+++++.+|++|++=.|-..-. ..| .+.+|. .+.++|+.+...+ .+.++..+++||+
T Consensus 158 ~d~l~~~a~~~kPklIi~G~S~y~~~~d~~~~-reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADv 225 (399)
T PF00464_consen 158 YDELEKLAKEHKPKLIICGASSYPRPIDFKRF-REIADEVGAYLMADISHIAGLIAGGLFPNPFPYADV 225 (399)
T ss_dssp HHHHHHHHHHH--SEEEEE-SSTSS---HHHH-HHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSE
T ss_pred HHHHHHHHhhcCCCEEEECchhccCccCHHHH-HHHHHhcCcEEEecccccccceehheecCccccceE
Confidence 46777888888999999777665422 222 123333 3778999876443 1233444555554
No 425
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=26.06 E-value=64 Score=29.38 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=21.0
Q ss_pred eEEEEecCCCCCchhhhHHHHHHHHH-hcCCCC
Q 032030 92 DLLVINKTDLASAIGADLAVMERDAL-RMRDGG 123 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~~i~-~~np~a 123 (148)
.|+|++|+||+..--+.=.++.+.+. +++|..
T Consensus 482 TIfVLTKVDlAEknlA~PdRI~kIleGKLFPMK 514 (980)
T KOG0447|consen 482 TIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMK 514 (980)
T ss_pred eEEEEeecchhhhccCCHHHHHHHHhcCccchh
Confidence 69999999987541122346777676 566654
No 426
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=26.03 E-value=60 Score=26.04 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=30.5
Q ss_pred CCCCChhhhhhhhhcCCCeeeeeccchhhchHHHHHhhhhcCCCEEEEecCC
Q 032030 2 RNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGG 53 (148)
Q Consensus 2 ~~~~~~~~~~~~~~~nGcicc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG 53 (148)
.|++..|+++.+.--.-+-.-++.|+..+..+++..+.+ ++|+|+ +||
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~--r~D~vI--~tG 68 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASE--RADVVI--TTG 68 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHh--CCCEEE--ECC
Confidence 366777888777422222234667888776677766554 399888 455
No 427
>PRK12739 elongation factor G; Reviewed
Probab=25.65 E-value=95 Score=28.18 Aligned_cols=26 Identities=12% Similarity=-0.129 Sum_probs=21.8
Q ss_pred CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 120 RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 120 np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+...||+..||.++.|+++|++.+..
T Consensus 250 ~~~~Pv~~gSa~~~~Gv~~LLd~I~~ 275 (691)
T PRK12739 250 MEFFPVLCGSAFKNKGVQPLLDAVVD 275 (691)
T ss_pred CCEEEEEeccccCCccHHHHHHHHHH
Confidence 34568999999999999999998754
No 428
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=25.48 E-value=85 Score=21.96 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=22.3
Q ss_pred CCCEEEEecCCceeeeee-ccccCceEEEEEeCCCC
Q 032030 43 KADLLLCESGGDNLAANF-SRELADYIIYIIDVSGG 77 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~-~~~~~d~~i~vvDa~~~ 77 (148)
++|+|+|.+.+....... .-..+|.++.++++...
T Consensus 44 ~yd~VIiD~p~~~~~~~~~~l~~aD~vviv~~~~~~ 79 (139)
T cd02038 44 DYDYIIIDTGAGISDNVLDFFLAADEVIVVTTPEPT 79 (139)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCeEEEEcCCChh
Confidence 399999999874321111 11356888888887544
No 429
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=25.38 E-value=1.9e+02 Score=19.07 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=30.3
Q ss_pred hhhhhcCCCeeeeeccchhhc-hHHHHHhhhhcCCCEEEEecC
Q 032030 11 IRAVETGGCPHAAIREDISIN-LGPLEELSNLFKADLLLCESG 52 (148)
Q Consensus 11 ~~~~~~nGcicc~i~~dl~~~-~~al~~l~~~~~~D~IliEts 52 (148)
++.+..+-.-++.+-.|.+.. ...+..++++.++.++++++-
T Consensus 22 ~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~ 64 (84)
T PRK13600 22 LKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSK 64 (84)
T ss_pred HHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCH
Confidence 445555667788888777643 346777888889999998873
No 430
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=25.19 E-value=40 Score=24.98 Aligned_cols=43 Identities=14% Similarity=0.290 Sum_probs=26.8
Q ss_pred hhhhhhhcCCCeeeeeccchhhc----hHHHHHhhhhcCCCEEEEecCC
Q 032030 9 ERIRAVETGGCPHAAIREDISIN----LGPLEELSNLFKADLLLCESGG 53 (148)
Q Consensus 9 ~~~~~~~~nGcicc~i~~dl~~~----~~al~~l~~~~~~D~IliEtsG 53 (148)
.+++.++ .||+.-. +.++..- -+.+.++.++++||.+-||.+=
T Consensus 21 ~~~~~v~-~G~I~t~-~~~~~~RL~~I~~~l~~~i~~y~P~~~aiE~~F 67 (156)
T TIGR00228 21 RQLSYLG-SGCIRTK-VDDLPSRLKLIYAGVTEIITQFQPNYFAIEQVF 67 (156)
T ss_pred CeEEEEE-eeEEECC-CCCHHHHHHHHHHHHHHHHHHhCCCEEEEeHHh
Confidence 3444443 6777654 3344332 3456667778899999999764
No 431
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=25.17 E-value=81 Score=24.18 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=11.4
Q ss_pred cCCCEEEEecCCc
Q 032030 42 FKADLLLCESGGD 54 (148)
Q Consensus 42 ~~~D~IliEtsG~ 54 (148)
.++|+|+||.+|-
T Consensus 104 ~~~D~VlVEGaGg 116 (231)
T PRK12374 104 EKVDHVVVEGTGG 116 (231)
T ss_pred hhCCEEEEECCCC
Confidence 4799999999994
No 432
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=24.92 E-value=2.4e+02 Score=22.92 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=32.6
Q ss_pred eeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 90 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 90 ~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
.||+|.+ |-.++ +++.+..+.+++.+|+. .+.+-.|.+.+.+-++-
T Consensus 209 gaDiI~L---Dn~~~--e~l~~av~~~~~~~~~~---~leaSGGI~~~ni~~yA 254 (284)
T PRK06096 209 QPDVLQL---DKFSP--QQATEIAQIAPSLAPHC---TLSLAGGINLNTLKNYA 254 (284)
T ss_pred CCCEEEE---CCCCH--HHHHHHHHHhhccCCCe---EEEEECCCCHHHHHHHH
Confidence 4799988 66677 88888888777666653 34444688888776553
No 433
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=24.55 E-value=1e+02 Score=21.42 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=23.9
Q ss_pred CCChhhhhhhhhcCCCee---eeeccchhhchHHHHHhhhhcCCCEEEEecCC
Q 032030 4 GALPEERIRAVETGGCPH---AAIREDISINLGPLEELSNLFKADLLLCESGG 53 (148)
Q Consensus 4 ~~~~~~~~~~~~~nGcic---c~i~~dl~~~~~al~~l~~~~~~D~IliEtsG 53 (148)
|....+++++ .||-. -.+++|.....+++.++.. ..|+|+ |+|
T Consensus 20 ~~~l~~~l~~---~G~~~~~~~~v~Dd~~~I~~~l~~~~~--~~dlii--ttG 65 (135)
T smart00852 20 GPALAELLTE---LGIEVTRYVIVPDDKEAIKEALREALE--RADLVI--TTG 65 (135)
T ss_pred HHHHHHHHHH---CCCeEEEEEEeCCCHHHHHHHHHHHHh--CCCEEE--EcC
Confidence 3344455555 57643 2345777655556655543 588777 555
No 434
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=23.43 E-value=1.2e+02 Score=24.06 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=19.5
Q ss_pred CcceeeEEEEecCCCCCchhhhHHHHHHHHH
Q 032030 87 GITQADLLVINKTDLASAIGADLAVMERDAL 117 (148)
Q Consensus 87 qi~~ADivViNK~DL~~~~~~~l~~~~~~i~ 117 (148)
.+| ..+|+||+|+.+-+.+-...+.+.-+
T Consensus 69 ~~P--VYvv~Tk~D~l~GF~ef~~~L~~~~r 97 (266)
T PF14331_consen 69 RLP--VYVVFTKCDLLPGFDEFFSDLSEEER 97 (266)
T ss_pred CCC--eEeeeECCCcccCHHHHHHhCCHHHH
Confidence 455 89999999999874443344444444
No 435
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.25 E-value=1.7e+02 Score=25.43 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=31.9
Q ss_pred ceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 89 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 89 ~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
..||++++|=|=-......+.-.....+++.+|++.|+-+=...... ++++...
T Consensus 39 ~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~p~~~iiVtGC~aq~~-~~i~~~~ 92 (437)
T COG0621 39 EEADVVIINTCAVREKAEQKVRSAIGELKKLKPDAKIIVTGCLAQAE-EEILERA 92 (437)
T ss_pred ccCCEEEEecCeeeehHHHHHHHHHHHHHHhCCCCEEEEeCCccccC-HHHHhhC
Confidence 35899999987766551122223334455677988888765544333 5555443
No 436
>PF04239 DUF421: Protein of unknown function (DUF421); InterPro: IPR007353 This family of uncharacterised proteins is known as YDFR family; PDB: 3C6F_D.
Probab=23.13 E-value=39 Score=22.83 Aligned_cols=45 Identities=27% Similarity=0.477 Sum_probs=23.2
Q ss_pred CCCCCChhhhhhhhhcCCCeeeeeccchhhchHHHHHh--hhhcCCCEEEEecCCce
Q 032030 1 MRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL--SNLFKADLLLCESGGDN 55 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~~nGcicc~i~~dl~~~~~al~~l--~~~~~~D~IliEtsG~~ 55 (148)
++||.++-+.++... -+ .+|+ ..+|.+- ..-...++.++|+.|-.
T Consensus 12 i~dG~i~~~~l~~~~------it-~~dl---~~~LR~~gi~~l~dV~~a~lE~~G~l 58 (99)
T PF04239_consen 12 IRDGKIDEDNLRRAR------IT-EEDL---LSALREQGIESLSDVKAAVLEPNGQL 58 (99)
T ss_dssp EETTEE-HHHHHHTT---------HHHH---HHHHHHTT--SGGGEEEEEE-TTS-E
T ss_pred EECCEECHHHHhHcC------CC-HHHH---HHHHHhhCCCCHHHcCEEEECCCCCE
Confidence 468888888888732 11 1233 2233211 11126889999999954
No 437
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=22.80 E-value=98 Score=24.65 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEe
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQV 130 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa 130 (148)
+.++.+.+.+++.||..+|+.|-.
T Consensus 152 ~~l~~~~~~l~~~nP~~kiilTVS 175 (251)
T PF08885_consen 152 EDLEAIIDLLRSINPDIKIILTVS 175 (251)
T ss_pred HHHHHHHHHHHhhCCCceEEEEec
Confidence 456778889999999999988753
No 438
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=22.63 E-value=1.1e+02 Score=27.64 Aligned_cols=26 Identities=12% Similarity=-0.061 Sum_probs=21.8
Q ss_pred CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 120 RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 120 np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+.-.||+..||+++.|+.+|++.+..
T Consensus 251 ~~~~PV~~gSa~~~~Gv~~LLd~I~~ 276 (689)
T TIGR00484 251 CEFFPVLCGSAFKNKGVQLLLDAVVD 276 (689)
T ss_pred CCEEEEEeccccCCccHHHHHHHHHH
Confidence 34568888999999999999998754
No 439
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=21.68 E-value=1.3e+02 Score=24.94 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=33.1
Q ss_pred hhhhcCCCEEEEecCCceeeeee-c-cccCceEEEEEeCCCCCC----ccc-cC---CCCcceeeEEEEecC
Q 032030 38 LSNLFKADLLLCESGGDNLAANF-S-RELADYIIYIIDVSGGDK----IPR-KG---GPGITQADLLVINKT 99 (148)
Q Consensus 38 l~~~~~~D~IliEtsG~~~~~~~-~-~~~~d~~i~vvDa~~~~~----~~~-~~---~~qi~~ADivViNK~ 99 (148)
+.+..++|+|+.+ .-| . ....|+-|+++|+.++.. +|. .+ ..++..||++++||.
T Consensus 137 ~~~~~~~dviilD-------DGfQh~~l~rdl~Ivl~d~~~~fgng~~LPaG~LREp~~~l~rAd~vv~~~~ 201 (325)
T PRK00652 137 LLAAHGADIIILD-------DGLQHYRLARDIEIVVVDGQRGFGNGFLLPAGPLREPPSRLKSVDAVIVNGG 201 (325)
T ss_pred HHhcCCCCEEEEc-------CCccCcccCCCeEEEEECCCCCCCCCccCCCcCccCChhHhccCCEEEEeCC
Confidence 3333467777743 112 1 123577799999876532 232 11 237899999999994
No 440
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=21.39 E-value=1.2e+02 Score=24.72 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=43.1
Q ss_pred cCceEEEEEeCCCCCCccc------c------------CCCCc-ceeeEEEEecCCCCCc-------------h---hhh
Q 032030 64 LADYIIYIIDVSGGDKIPR------K------------GGPGI-TQADLLVINKTDLASA-------------I---GAD 108 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~------~------------~~~qi-~~ADivViNK~DL~~~-------------~---~~~ 108 (148)
.++.+++|+|....+.... . ..+.+ ...-++++||.|+..+ . ..+
T Consensus 184 ~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~ 263 (317)
T cd00066 184 DVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPND 263 (317)
T ss_pred CCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCC
Confidence 4567799999887643210 0 00111 2236999999995221 0 023
Q ss_pred HHHHHHHH----HhcCC--CCc--EEEEEecCCCCHHHHHHhhh
Q 032030 109 LAVMERDA----LRMRD--GGP--FIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 109 l~~~~~~i----~~~np--~a~--vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+...+++ .++++ ..+ .+.|+|..-.++..+|+.+.
T Consensus 264 ~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~ 307 (317)
T cd00066 264 YEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVK 307 (317)
T ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHH
Confidence 33333333 33332 123 35578877777777776653
No 441
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.39 E-value=2.9e+02 Score=23.26 Aligned_cols=37 Identities=16% Similarity=0.007 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+-++.+++.++. +..||+-+|+.+++|.+..++.+-+
T Consensus 61 dgl~~l~~im~~--~p~pVimvsslt~~g~~~t~~al~~ 97 (350)
T COG2201 61 DGLEALRKIMRL--RPLPVIMVSSLTEEGAEATLEALEL 97 (350)
T ss_pred cHHHHHHHHhcC--CCCcEEEEeccccccHHHHHHHHhc
Confidence 445667666664 6689999999999997777766543
No 442
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.35 E-value=1.5e+02 Score=25.31 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=24.5
Q ss_pred cceeeEEEEecCCCCCchhhhHHHH-----HHHHHhcCCCCcEEEEEec
Q 032030 88 ITQADLLVINKTDLASAIGADLAVM-----ERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 88 i~~ADivViNK~DL~~~~~~~l~~~-----~~~i~~~np~a~vi~tSa~ 131 (148)
.+.||+++||=+=-..+ ++.+.. .+.+++.||.++|+.+-..
T Consensus 36 ~~~ADv~iiNTC~v~~~--a~~k~~~~i~~~~~~~~~~~~~~vvv~GC~ 82 (439)
T PRK14328 36 REEADIIIFNTCCVREN--AENKVFGNLGELKKLKEKNPNLIIGVCGCM 82 (439)
T ss_pred cCcCCEEEEecccEech--HHHHHHHHHHHHHHHHhhCCCCEEEEECch
Confidence 44578999996655544 332221 2334566788877765443
No 443
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=20.88 E-value=1.4e+02 Score=22.52 Aligned_cols=38 Identities=8% Similarity=-0.192 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecC---CCCHHHHHHhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGW---VIGIIFTLSITH 144 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~---g~gi~~l~~~~~ 144 (148)
...+.+.+.++++||+..+....... ....++++...-
T Consensus 75 ~Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~d 115 (198)
T cd01485 75 NRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFT 115 (198)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCC
Confidence 56678889999999999887655432 234555555443
No 444
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=20.66 E-value=66 Score=28.27 Aligned_cols=23 Identities=17% Similarity=0.080 Sum_probs=20.2
Q ss_pred CCcEEEEEecCCCCHHHHHHhhh
Q 032030 122 GGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 122 ~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..|||+-||.+++|++.+++.+.
T Consensus 250 ~TPVFFGSAl~NFGV~~~L~~~~ 272 (528)
T COG4108 250 LTPVFFGSALGNFGVDHFLDALV 272 (528)
T ss_pred ccceEehhhhhccCHHHHHHHHH
Confidence 47999999999999999998753
No 445
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=20.62 E-value=1.8e+02 Score=16.33 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=18.1
Q ss_pred cCCCCCchhhhHHHHHHHHHhcCCCCcEEE
Q 032030 98 KTDLASAIGADLAVMERDALRMRDGGPFIF 127 (148)
Q Consensus 98 K~DL~~~~~~~l~~~~~~i~~~np~a~vi~ 127 (148)
..|...- ++.+.+.++++..+| ..+++
T Consensus 11 ~~~fSgH--ad~~~L~~~i~~~~p-~~vil 37 (43)
T PF07521_consen 11 QIDFSGH--ADREELLEFIEQLNP-RKVIL 37 (43)
T ss_dssp ESGCSSS---BHHHHHHHHHHHCS-SEEEE
T ss_pred EEeecCC--CCHHHHHHHHHhcCC-CEEEE
Confidence 3555555 677788889998888 44444
No 446
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.31 E-value=1.5e+02 Score=21.30 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHhcCCCCcEEEEEe
Q 032030 106 GADLAVMERDALRMRDGGPFIFAQV 130 (148)
Q Consensus 106 ~~~l~~~~~~i~~~np~a~vi~tSa 130 (148)
.+.+..+.+.+++.+|.++|+.++-
T Consensus 77 ~~~~~~~i~~i~~~~p~~~iil~~~ 101 (177)
T cd01844 77 RERLGPLVKGLRETHPDTPILLVSP 101 (177)
T ss_pred HHHHHHHHHHHHHHCcCCCEEEEec
Confidence 3667788888899899999988773
No 447
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=20.16 E-value=1.5e+02 Score=21.24 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=24.0
Q ss_pred ChhhhhhhhhcCCCeee---eeccchhhchHHHHHhhhhcCCCEEEEecCCc
Q 032030 6 LPEERIRAVETGGCPHA---AIREDISINLGPLEELSNLFKADLLLCESGGD 54 (148)
Q Consensus 6 ~~~~~~~~~~~nGcicc---~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~ 54 (148)
..+.++++ .||..- .+.+|.....+++.+..+..+.|+|+ +||-
T Consensus 24 ~l~~~l~~---~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVi--ttGG 70 (152)
T cd00886 24 ALVELLEE---AGHEVVAYEIVPDDKDEIREALIEWADEDGVDLIL--TTGG 70 (152)
T ss_pred HHHHHHHH---cCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEE--ECCC
Confidence 33444444 677532 33677755455565554322688887 5663
Done!