Query 032030
Match_columns 148
No_of_seqs 146 out of 1182
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:49:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p32_A Probable GTPase RV1496/ 99.5 1.5E-14 5.1E-19 117.8 9.3 136 3-144 123-279 (355)
2 2www_A Methylmalonic aciduria 99.5 7.4E-14 2.5E-18 113.8 9.0 135 4-144 119-274 (349)
3 2wsm_A Hydrogenase expression/ 99.5 1.9E-14 6.5E-19 108.2 2.9 121 17-144 88-209 (221)
4 2qm8_A GTPase/ATPase; G protei 99.4 8.4E-13 2.9E-17 107.1 9.0 138 4-144 100-256 (337)
5 1nij_A Hypothetical protein YJ 99.4 5.2E-14 1.8E-18 113.1 1.8 119 16-142 61-198 (318)
6 2hf9_A Probable hydrogenase ni 99.4 2.2E-13 7.7E-18 102.6 4.2 123 17-144 96-219 (226)
7 2p67_A LAO/AO transport system 99.3 1.6E-12 5.3E-17 105.4 7.2 138 4-144 101-256 (341)
8 1yrb_A ATP(GTP)binding protein 99.0 8E-11 2.7E-15 90.5 0.7 100 43-145 108-253 (262)
9 3iev_A GTP-binding protein ERA 98.8 6.3E-09 2.2E-13 82.9 6.1 99 43-145 58-178 (308)
10 4dhe_A Probable GTP-binding pr 98.7 3.6E-08 1.2E-12 73.4 6.8 99 43-145 78-207 (223)
11 1f6b_A SAR1; gtpases, N-termin 98.5 3.1E-07 1.1E-11 67.8 7.7 98 44-145 69-195 (198)
12 3pqc_A Probable GTP-binding pr 98.5 1.3E-07 4.4E-12 68.4 4.9 99 43-145 67-190 (195)
13 1zj6_A ADP-ribosylation factor 98.5 5.8E-07 2E-11 65.1 8.2 98 44-145 60-174 (187)
14 4bas_A ADP-ribosylation factor 98.4 2.7E-07 9.2E-12 67.1 5.8 99 43-145 62-185 (199)
15 1upt_A ARL1, ADP-ribosylation 98.4 8.6E-07 2.9E-11 62.6 8.0 99 43-145 50-165 (171)
16 1moz_A ARL1, ADP-ribosylation 98.4 9E-07 3.1E-11 63.4 8.0 97 44-144 62-175 (183)
17 1svi_A GTP-binding protein YSX 98.4 4.7E-07 1.6E-11 65.7 6.1 98 44-145 69-191 (195)
18 1vg8_A RAS-related protein RAB 98.4 8.9E-07 3E-11 64.8 7.2 97 44-144 57-170 (207)
19 2x77_A ADP-ribosylation factor 98.4 1.4E-06 4.9E-11 63.0 8.2 98 44-145 66-180 (189)
20 1m2o_B GTP-binding protein SAR 98.4 5.5E-07 1.9E-11 65.9 5.9 98 44-145 67-188 (190)
21 2h17_A ADP-ribosylation factor 98.3 1.2E-06 4.2E-11 63.2 7.3 97 44-144 65-178 (181)
22 3t1o_A Gliding protein MGLA; G 98.3 1.5E-06 5E-11 62.7 7.6 96 45-145 75-188 (198)
23 2h57_A ADP-ribosylation factor 98.3 1.3E-06 4.6E-11 63.3 7.4 99 43-145 66-183 (190)
24 1ky3_A GTP-binding protein YPT 98.3 1.6E-06 5.6E-11 61.6 7.7 99 44-145 58-174 (182)
25 1ksh_A ARF-like protein 2; sma 98.3 1.2E-06 4.2E-11 63.1 6.3 98 44-145 62-176 (186)
26 2b6h_A ADP-ribosylation factor 98.3 1.2E-06 4E-11 64.3 6.2 98 44-145 73-187 (192)
27 1wf3_A GTP-binding protein; GT 98.3 7.2E-07 2.5E-11 71.0 5.2 96 43-144 54-168 (301)
28 1r8s_A ADP-ribosylation factor 98.3 1.3E-06 4.4E-11 61.4 6.0 99 43-145 43-158 (164)
29 1wb1_A Translation elongation 98.3 7.9E-07 2.7E-11 75.1 5.6 98 44-145 73-185 (482)
30 1z08_A RAS-related protein RAB 98.3 6.7E-07 2.3E-11 63.1 4.4 97 44-144 55-164 (170)
31 2g6b_A RAS-related protein RAB 98.3 1.9E-06 6.4E-11 61.5 6.8 97 44-144 60-169 (180)
32 2fu5_C RAS-related protein RAB 98.3 1.7E-06 5.9E-11 62.1 6.5 98 44-145 57-167 (183)
33 4djt_A GTP-binding nuclear pro 98.3 6.4E-07 2.2E-11 66.4 4.2 96 44-145 61-171 (218)
34 1zd9_A ADP-ribosylation factor 98.3 1.7E-06 5.9E-11 62.8 6.3 98 44-145 67-181 (188)
35 3o47_A ADP-ribosylation factor 98.2 2.4E-06 8.2E-11 68.5 7.4 78 64-145 232-323 (329)
36 2fg5_A RAB-22B, RAS-related pr 98.2 1.4E-06 4.7E-11 63.6 5.4 98 44-145 72-182 (192)
37 3gee_A MNME, tRNA modification 98.2 2.6E-06 8.8E-11 72.0 7.8 94 43-144 280-393 (476)
38 2bcg_Y Protein YP2, GTP-bindin 98.2 1.7E-06 6E-11 63.5 5.9 98 44-145 57-167 (206)
39 4dcu_A GTP-binding protein ENG 98.2 9.2E-07 3.1E-11 73.8 4.9 79 64-144 277-364 (456)
40 3tkl_A RAS-related protein RAB 98.2 2.1E-06 7.3E-11 62.1 6.3 97 44-144 65-174 (196)
41 1fzq_A ADP-ribosylation factor 98.2 2.6E-06 8.9E-11 61.7 6.7 78 64-145 83-174 (181)
42 1u0l_A Probable GTPase ENGC; p 98.2 1.6E-06 5.4E-11 68.8 5.8 77 64-144 84-168 (301)
43 2lkc_A Translation initiation 98.2 1.7E-06 5.6E-11 61.7 5.4 96 45-145 56-167 (178)
44 1z0f_A RAB14, member RAS oncog 98.2 1.5E-06 5.1E-11 61.7 5.0 98 44-145 64-174 (179)
45 2gf9_A RAS-related protein RAB 98.2 2.3E-06 7.8E-11 62.0 6.1 98 44-145 71-181 (189)
46 2yv5_A YJEQ protein; hydrolase 98.2 1.6E-06 5.3E-11 69.0 5.5 75 64-144 79-164 (302)
47 3tw8_B RAS-related protein RAB 98.2 5.7E-07 2E-11 64.0 2.7 98 44-145 58-167 (181)
48 1z0j_A RAB-22, RAS-related pro 98.2 2.3E-06 7.8E-11 60.2 5.4 97 44-144 55-164 (170)
49 2efe_B Small GTP-binding prote 98.2 2.1E-06 7.3E-11 61.2 5.2 98 44-145 61-171 (181)
50 3sjy_A Translation initiation 98.2 2.3E-06 8E-11 70.3 5.9 97 44-144 75-187 (403)
51 2y8e_A RAB-protein 6, GH09086P 98.1 1.6E-06 5.4E-11 61.6 4.0 96 45-144 64-172 (179)
52 1ega_A Protein (GTP-binding pr 98.1 7E-06 2.4E-10 65.0 8.1 98 43-144 55-170 (301)
53 3lvq_E ARF-GAP with SH3 domain 98.1 3.7E-06 1.3E-10 70.4 6.8 78 64-145 389-480 (497)
54 2qu8_A Putative nucleolar GTP- 98.1 4.3E-06 1.5E-10 62.8 6.3 98 44-145 76-201 (228)
55 1r2q_A RAS-related protein RAB 98.1 1.8E-06 6.1E-11 60.7 3.8 98 44-145 55-165 (170)
56 2f7s_A C25KG, RAS-related prot 98.1 8.8E-06 3E-10 60.1 7.4 78 64-145 107-195 (217)
57 1x3s_A RAS-related protein RAB 98.1 1.1E-05 3.6E-10 58.2 7.7 97 44-145 64-174 (195)
58 3con_A GTPase NRAS; structural 98.1 8.5E-06 2.9E-10 58.8 6.8 97 44-145 69-179 (190)
59 2oil_A CATX-8, RAS-related pro 98.1 3.7E-06 1.3E-10 61.0 4.8 78 64-145 97-184 (193)
60 3bc1_A RAS-related protein RAB 98.1 2.9E-06 9.9E-11 60.9 4.0 98 44-145 70-181 (195)
61 2a5j_A RAS-related protein RAB 98.1 4.9E-06 1.7E-10 60.5 5.3 97 44-144 70-179 (191)
62 2il1_A RAB12; G-protein, GDP, 98.1 2.7E-06 9.1E-11 62.1 3.8 98 44-144 75-185 (192)
63 3q72_A GTP-binding protein RAD 98.0 2E-06 6.8E-11 60.5 2.9 98 43-144 48-159 (166)
64 1g16_A RAS-related protein SEC 98.0 5.7E-06 1.9E-10 58.1 5.2 97 44-145 52-161 (170)
65 3oes_A GTPase rhebl1; small GT 98.0 1E-06 3.5E-11 64.7 1.2 97 44-144 72-182 (201)
66 2bme_A RAB4A, RAS-related prot 98.0 1.8E-06 6.2E-11 62.0 2.4 97 44-144 59-168 (186)
67 1puj_A YLQF, conserved hypothe 98.0 1E-05 3.6E-10 63.7 6.9 75 64-144 23-101 (282)
68 1zbd_A Rabphilin-3A; G protein 98.0 5.2E-06 1.8E-10 60.7 4.8 98 44-145 57-167 (203)
69 3cnl_A YLQF, putative uncharac 98.0 2E-05 6.8E-10 61.5 8.4 75 64-144 21-96 (262)
70 2o52_A RAS-related protein RAB 98.0 5.6E-06 1.9E-10 60.8 4.8 98 44-145 74-184 (200)
71 1xzp_A Probable tRNA modificat 98.0 1.2E-05 4.1E-10 68.0 7.4 95 44-145 291-401 (482)
72 1kk1_A EIF2gamma; initiation o 98.0 1.5E-05 5.2E-10 65.5 7.8 99 44-144 83-195 (410)
73 3dz8_A RAS-related protein RAB 98.0 5.8E-06 2E-10 60.1 4.7 78 64-145 95-182 (191)
74 3geh_A MNME, tRNA modification 98.0 2.1E-06 7.1E-11 72.3 2.5 93 43-144 271-379 (462)
75 1c1y_A RAS-related protein RAP 98.0 4.4E-06 1.5E-10 58.6 3.9 98 44-144 51-162 (167)
76 2nzj_A GTP-binding protein REM 98.0 6.7E-06 2.3E-10 58.2 4.8 98 44-145 52-165 (175)
77 2hjg_A GTP-binding protein ENG 98.0 5.2E-06 1.8E-10 68.9 4.8 81 64-144 257-344 (436)
78 2fh5_B SR-beta, signal recogni 98.0 2.8E-06 9.7E-11 62.7 2.7 99 43-145 53-212 (214)
79 1wms_A RAB-9, RAB9, RAS-relate 98.0 7.9E-06 2.7E-10 58.0 4.9 98 44-145 56-170 (177)
80 1ek0_A Protein (GTP-binding pr 98.0 6.1E-06 2.1E-10 57.9 4.2 98 44-145 52-165 (170)
81 1s0u_A EIF-2-gamma, translatio 98.0 9.3E-06 3.2E-10 66.8 5.9 100 44-144 81-193 (408)
82 2hup_A RAS-related protein RAB 98.0 7.3E-06 2.5E-10 60.4 4.7 79 64-145 101-189 (201)
83 2ew1_A RAS-related protein RAB 98.0 6.6E-06 2.3E-10 61.0 4.5 97 45-145 76-185 (201)
84 2iwr_A Centaurin gamma 1; ANK 98.0 6.2E-06 2.1E-10 58.8 4.2 79 64-145 72-165 (178)
85 1u8z_A RAS-related protein RAL 97.9 5.9E-06 2E-10 57.7 3.8 98 44-145 52-163 (168)
86 3cph_A RAS-related protein SEC 97.9 5.3E-06 1.8E-10 60.9 3.7 97 44-145 69-178 (213)
87 3kkq_A RAS-related protein M-R 97.9 1.4E-05 4.8E-10 57.2 5.7 77 64-144 89-177 (183)
88 2yc2_C IFT27, small RAB-relate 97.9 6.2E-06 2.1E-10 60.1 3.8 98 44-145 73-188 (208)
89 2bov_A RAla, RAS-related prote 97.9 1.1E-05 3.6E-10 58.8 4.9 97 44-144 62-172 (206)
90 4dkx_A RAS-related protein RAB 97.9 1.1E-05 3.6E-10 61.2 4.7 78 64-145 85-172 (216)
91 3cpj_B GTP-binding protein YPT 97.9 7.5E-06 2.6E-10 61.1 3.8 98 44-145 62-172 (223)
92 3q85_A GTP-binding protein REM 97.9 1.1E-05 3.8E-10 56.8 4.4 98 43-144 50-162 (169)
93 3iby_A Ferrous iron transport 97.9 5.6E-07 1.9E-11 70.0 -2.7 95 43-144 47-162 (256)
94 2a9k_A RAS-related protein RAL 97.9 9.4E-06 3.2E-10 57.9 4.0 98 44-145 66-177 (187)
95 3l0i_B RAS-related protein RAB 97.9 7.8E-07 2.7E-11 65.3 -1.9 96 44-145 82-192 (199)
96 2ce2_X GTPase HRAS; signaling 97.9 2.4E-05 8.3E-10 54.3 5.8 98 43-145 50-161 (166)
97 2p5s_A RAS and EF-hand domain 97.9 9.9E-06 3.4E-10 59.2 3.9 78 64-145 100-193 (199)
98 3i8s_A Ferrous iron transport 97.9 2.9E-07 9.9E-12 72.0 -4.8 95 43-144 49-164 (274)
99 2fn4_A P23, RAS-related protei 97.9 4.4E-06 1.5E-10 59.3 1.8 96 44-145 57-168 (181)
100 2cxx_A Probable GTP-binding pr 97.8 1.8E-05 6E-10 56.8 4.9 77 64-145 82-180 (190)
101 4dsu_A GTPase KRAS, isoform 2B 97.8 1.2E-05 4.2E-10 57.5 4.0 94 45-144 53-161 (189)
102 2hxs_A RAB-26, RAS-related pro 97.8 1.4E-05 4.8E-10 56.7 4.3 100 44-145 56-169 (178)
103 1z06_A RAS-related protein RAB 97.8 5.3E-05 1.8E-09 54.6 7.2 97 44-144 69-183 (189)
104 1g7s_A Translation initiation 97.8 2.4E-05 8.4E-10 67.7 6.3 99 44-144 70-213 (594)
105 3c5h_A Glucocorticoid receptor 97.8 1.9E-05 6.3E-10 60.9 5.0 77 64-145 162-251 (255)
106 2erx_A GTP-binding protein DI- 97.8 4E-06 1.4E-10 58.9 1.1 96 44-145 51-163 (172)
107 1t9h_A YLOQ, probable GTPase E 97.8 2.1E-05 7.3E-10 63.0 5.1 114 18-143 34-171 (307)
108 3cb4_D GTP-binding protein LEP 97.8 3.8E-05 1.3E-09 66.6 7.1 96 44-144 71-177 (599)
109 1mky_A Probable GTP-binding pr 97.8 1.9E-05 6.4E-10 65.6 4.9 78 65-144 264-350 (439)
110 2ywe_A GTP-binding protein LEP 97.8 2.7E-05 9.1E-10 67.6 6.0 96 44-144 73-179 (600)
111 2g3y_A GTP-binding protein GEM 97.8 6.3E-06 2.1E-10 62.1 1.7 78 64-145 111-199 (211)
112 1kao_A RAP2A; GTP-binding prot 97.8 8.5E-06 2.9E-10 56.8 2.3 98 44-145 51-162 (167)
113 3cbq_A GTP-binding protein REM 97.8 3.2E-05 1.1E-09 56.7 5.5 78 64-145 96-184 (195)
114 1lnz_A SPO0B-associated GTP-bi 97.8 2.1E-05 7.3E-10 63.7 4.7 97 44-146 206-327 (342)
115 3clv_A RAB5 protein, putative; 97.8 3.7E-05 1.2E-09 55.2 5.5 97 44-145 93-200 (208)
116 3a1s_A Iron(II) transport prot 97.8 2.4E-06 8.1E-11 66.4 -1.0 95 43-144 51-162 (258)
117 3th5_A RAS-related C3 botulinu 97.0 3.5E-06 1.2E-10 61.8 0.0 98 43-145 77-201 (204)
118 3k53_A Ferrous iron transport 97.8 1.4E-06 4.9E-11 67.6 -2.3 96 43-145 49-162 (271)
119 2dyk_A GTP-binding protein; GT 97.8 7.5E-06 2.6E-10 57.1 1.6 94 43-144 48-157 (161)
120 3t5g_A GTP-binding protein RHE 97.7 1.6E-05 5.5E-10 56.8 3.1 97 44-144 54-164 (181)
121 3bwd_D RAC-like GTP-binding pr 97.7 2.1E-05 7.2E-10 56.0 3.5 98 43-145 55-177 (182)
122 3ihw_A Centg3; RAS, centaurin, 97.7 5.8E-05 2E-09 54.7 5.8 79 64-145 85-176 (184)
123 2aka_B Dynamin-1; fusion prote 97.7 6.9E-06 2.3E-10 63.8 0.8 95 43-143 124-247 (299)
124 2atx_A Small GTP binding prote 97.7 4.8E-05 1.7E-09 55.0 5.3 97 44-145 66-189 (194)
125 1z2a_A RAS-related protein RAB 97.7 2E-05 7E-10 55.1 3.2 99 43-145 53-163 (168)
126 2e87_A Hypothetical protein PH 97.7 3.2E-05 1.1E-09 62.4 4.7 75 64-144 246-331 (357)
127 3tr5_A RF-3, peptide chain rel 97.7 5.4E-05 1.8E-09 64.7 6.1 60 43-104 81-149 (528)
128 2elf_A Protein translation elo 97.7 5.4E-05 1.9E-09 61.8 5.8 96 43-144 59-175 (370)
129 2gj8_A MNME, tRNA modification 97.7 1.1E-05 3.7E-10 58.1 1.5 71 64-145 83-162 (172)
130 3h2y_A GTPase family protein; 97.7 9.2E-05 3.2E-09 60.4 7.1 77 64-144 69-155 (368)
131 2gf0_A GTP-binding protein DI- 97.7 4.9E-05 1.7E-09 54.9 4.9 96 45-145 57-167 (199)
132 3ec1_A YQEH GTPase; atnos1, at 97.7 9.1E-05 3.1E-09 60.4 6.9 77 64-144 71-157 (369)
133 3j2k_7 ERF3, eukaryotic polype 97.7 4.2E-05 1.4E-09 63.7 4.9 97 44-141 95-217 (439)
134 3p26_A Elongation factor 1 alp 97.6 1.5E-05 5.3E-10 66.9 2.2 96 43-138 110-227 (483)
135 2j1l_A RHO-related GTP-binding 97.6 5.5E-05 1.9E-09 56.1 4.9 77 64-145 105-205 (214)
136 2cjw_A GTP-binding protein GEM 97.6 2.2E-05 7.6E-10 57.5 2.4 77 65-145 81-168 (192)
137 1d2e_A Elongation factor TU (E 97.6 3.7E-05 1.3E-09 63.0 3.9 99 43-144 65-190 (397)
138 3reg_A RHO-like small GTPase; 97.6 6.3E-05 2.1E-09 54.5 4.7 78 64-144 94-183 (194)
139 2atv_A RERG, RAS-like estrogen 97.6 4.2E-05 1.4E-09 55.6 3.8 78 64-145 98-187 (196)
140 4gzl_A RAS-related C3 botulinu 97.6 3.8E-05 1.3E-09 56.5 3.6 96 45-145 79-201 (204)
141 1mh1_A RAC1; GTP-binding, GTPa 97.6 3.6E-05 1.2E-09 54.8 3.3 97 44-145 53-176 (186)
142 3b1v_A Ferrous iron uptake tra 97.6 9.6E-06 3.3E-10 63.6 -0.1 96 43-145 48-160 (272)
143 2c78_A Elongation factor TU-A; 97.6 6.3E-05 2.2E-09 61.7 4.7 100 43-144 74-207 (405)
144 3llu_A RAS-related GTP-binding 97.6 7.7E-05 2.6E-09 54.4 4.7 98 43-145 68-193 (196)
145 2j0v_A RAC-like GTP-binding pr 97.5 3.9E-05 1.3E-09 56.4 2.9 97 44-145 57-176 (212)
146 2wji_A Ferrous iron transport 97.5 5.8E-06 2E-10 58.9 -1.8 76 64-145 81-161 (165)
147 2fv8_A H6, RHO-related GTP-bin 97.5 5.4E-05 1.9E-09 55.7 3.4 97 44-145 73-196 (207)
148 2qpt_A EH domain-containing pr 97.5 0.00012 4.2E-09 62.7 6.0 85 16-117 140-244 (550)
149 1jny_A EF-1-alpha, elongation 97.5 0.00013 4.3E-09 60.6 5.8 96 43-138 83-202 (435)
150 3gj0_A GTP-binding nuclear pro 97.5 1.7E-05 5.8E-10 58.9 0.4 95 44-144 64-170 (221)
151 2gco_A H9, RHO-related GTP-bin 97.5 0.00014 4.8E-09 53.1 5.4 97 44-145 73-196 (201)
152 3izq_1 HBS1P, elongation facto 97.5 3.9E-05 1.3E-09 66.6 2.6 96 43-139 244-362 (611)
153 3dpu_A RAB family protein; roc 97.5 3.3E-05 1.1E-09 65.5 2.2 98 43-145 97-204 (535)
154 1zun_B Sulfate adenylate trans 97.5 9E-05 3.1E-09 61.4 4.6 95 44-139 104-214 (434)
155 3c5c_A RAS-like protein 12; GD 97.5 4.7E-05 1.6E-09 55.2 2.5 78 64-145 91-182 (187)
156 2qtf_A Protein HFLX, GTP-bindi 97.4 0.00013 4.3E-09 59.6 5.0 78 64-145 257-350 (364)
157 2q3h_A RAS homolog gene family 97.4 5.8E-05 2E-09 54.9 2.7 97 45-144 69-190 (201)
158 3qq5_A Small GTP-binding prote 97.4 2E-05 6.8E-10 65.7 -0.0 95 45-145 84-192 (423)
159 3izy_P Translation initiation 97.4 1.2E-05 4.1E-10 68.9 -1.9 99 44-144 52-163 (537)
160 2j69_A Bacterial dynamin-like 97.4 0.00017 6E-09 63.3 5.1 97 44-144 174-320 (695)
161 1mky_A Probable GTP-binding pr 97.3 0.00011 3.9E-09 60.8 3.0 94 44-144 49-161 (439)
162 2hjg_A GTP-binding protein ENG 97.3 9.8E-05 3.4E-09 61.1 2.5 94 43-144 50-160 (436)
163 1r5b_A Eukaryotic peptide chai 97.3 0.00022 7.4E-09 59.8 4.4 96 44-140 121-243 (467)
164 2x2e_A Dynamin-1; nitration, h 97.2 2.1E-05 7.1E-10 63.5 -2.1 96 43-144 129-253 (353)
165 3l82_B F-box only protein 4; T 97.2 0.00094 3.2E-08 51.3 7.1 79 64-144 125-218 (227)
166 2wjg_A FEOB, ferrous iron tran 97.2 2.4E-05 8.1E-10 56.2 -1.8 77 64-146 85-166 (188)
167 3zvr_A Dynamin-1; hydrolase, D 97.2 6.6E-05 2.3E-09 66.9 0.7 96 43-144 149-273 (772)
168 1zo1_I IF2, translation initia 97.2 2.3E-05 7.9E-10 66.7 -2.2 96 44-144 51-162 (501)
169 2rcn_A Probable GTPase ENGC; Y 97.2 0.00046 1.6E-08 56.4 5.3 47 92-142 163-212 (358)
170 1m7b_A RND3/RHOE small GTP-bin 97.2 0.00016 5.4E-09 52.0 2.2 98 44-144 55-178 (184)
171 3avx_A Elongation factor TS, e 97.1 0.00045 1.5E-08 64.3 5.3 97 44-144 359-481 (1289)
172 3q3j_B RHO-related GTP-binding 97.1 0.00032 1.1E-08 52.0 3.5 79 64-145 98-199 (214)
173 2wkq_A NPH1-1, RAS-related C3 97.1 0.00032 1.1E-08 54.7 3.6 77 64-145 226-326 (332)
174 1udx_A The GTP-binding protein 97.1 0.00088 3E-08 55.6 6.2 96 44-145 205-321 (416)
175 2j37_W Signal recognition part 97.1 6.1E-05 2.1E-09 64.1 -0.9 101 42-144 182-308 (504)
176 2xtp_A GTPase IMAP family memb 97.1 6E-05 2E-09 57.6 -0.9 99 43-145 70-204 (260)
177 3mca_A HBS1, elongation factor 97.0 0.00017 5.9E-09 62.3 1.5 94 43-137 254-371 (592)
178 1pui_A ENGB, probable GTP-bind 97.0 0.00073 2.5E-08 49.3 4.6 78 64-145 108-195 (210)
179 3t5d_A Septin-7; GTP-binding p 97.0 0.00016 5.5E-09 56.0 1.1 76 65-144 116-199 (274)
180 3r7w_A Gtpase1, GTP-binding pr 97.0 0.0016 5.6E-08 51.3 6.9 97 43-144 51-176 (307)
181 2zej_A Dardarin, leucine-rich 97.0 0.00086 2.9E-08 48.2 4.7 98 43-144 55-173 (184)
182 1gwn_A RHO-related GTP-binding 97.0 0.00029 9.9E-09 52.1 2.2 99 44-145 76-200 (205)
183 4dcu_A GTP-binding protein ENG 97.0 0.0005 1.7E-08 57.2 3.8 94 43-144 70-180 (456)
184 2rdo_7 EF-G, elongation factor 96.9 0.0021 7.1E-08 56.6 7.2 60 43-104 81-149 (704)
185 1dar_A EF-G, elongation factor 96.8 0.0016 5.6E-08 57.1 6.0 60 43-104 76-144 (691)
186 2f9l_A RAB11B, member RAS onco 96.8 0.0011 3.7E-08 48.2 4.1 78 64-145 77-164 (199)
187 2h5e_A Peptide chain release f 96.8 0.004 1.4E-07 53.1 7.9 60 43-104 81-149 (529)
188 3vqt_A RF-3, peptide chain rel 96.7 0.0016 5.5E-08 55.8 5.1 39 64-104 123-167 (548)
189 1jwy_B Dynamin A GTPase domain 96.6 0.00053 1.8E-08 53.5 1.4 95 43-143 130-256 (315)
190 2dy1_A Elongation factor G; tr 96.6 0.0021 7.3E-08 56.1 5.3 22 123-144 248-269 (665)
191 3l2o_B F-box only protein 4; s 96.6 0.0016 5.4E-08 52.2 4.1 79 64-144 210-303 (312)
192 1oix_A RAS-related protein RAB 96.6 0.0015 5E-08 47.5 3.4 77 65-145 102-188 (191)
193 2qag_A Septin-2, protein NEDD5 96.5 0.0021 7.1E-08 52.1 4.1 70 66-140 147-224 (361)
194 1f60_A Elongation factor EEF1A 96.2 0.00065 2.2E-08 56.8 -0.3 95 43-138 84-201 (458)
195 2xex_A Elongation factor G; GT 96.2 0.006 2.1E-07 53.5 5.8 60 43-104 74-142 (693)
196 2qnr_A Septin-2, protein NEDD5 96.2 0.0016 5.6E-08 51.4 1.7 48 92-144 158-209 (301)
197 3j25_A Tetracycline resistance 96.1 0.0019 6.6E-08 56.2 2.1 59 44-104 67-134 (638)
198 3dm5_A SRP54, signal recogniti 96.0 0.0019 6.5E-08 54.1 1.3 90 41-139 180-281 (443)
199 1cip_A Protein (guanine nucleo 95.9 0.0012 4.2E-08 53.6 -0.3 80 64-145 216-340 (353)
200 1zcb_A G alpha I/13; GTP-bindi 95.4 0.0037 1.3E-07 50.8 0.8 80 64-145 224-349 (362)
201 2xtz_A Guanine nucleotide-bind 95.2 0.0032 1.1E-07 51.1 -0.2 22 124-145 320-341 (354)
202 1nrj_B SR-beta, signal recogni 95.1 0.0054 1.8E-07 44.9 0.9 88 44-135 55-170 (218)
203 3r7w_B Gtpase2, GTP-binding pr 94.7 0.024 8.2E-07 45.7 3.8 77 64-145 72-170 (331)
204 1wxq_A GTP-binding protein; st 94.6 0.0043 1.5E-07 51.0 -0.8 46 92-141 217-262 (397)
205 3lxx_A GTPase IMAP family memb 94.6 0.02 6.9E-07 42.8 3.0 100 43-146 77-211 (239)
206 4fn5_A EF-G 1, elongation fact 94.6 0.042 1.4E-06 48.2 5.3 39 64-104 108-152 (709)
207 2v3c_C SRP54, signal recogniti 94.1 0.0013 4.3E-08 54.9 -5.2 63 42-104 179-253 (432)
208 2qag_C Septin-7; cell cycle, c 94.0 0.016 5.3E-07 48.1 1.2 49 91-143 169-221 (418)
209 3ohm_A Guanine nucleotide-bind 93.9 0.0093 3.2E-07 48.0 -0.2 54 92-145 237-314 (327)
210 1azs_C GS-alpha; complex (lyas 92.6 0.017 5.8E-07 47.7 -0.7 24 123-146 359-382 (402)
211 3kl4_A SRP54, signal recogniti 92.6 0.04 1.4E-06 45.9 1.6 87 42-137 178-278 (433)
212 3lxw_A GTPase IMAP family memb 91.3 0.029 9.8E-07 42.6 -0.6 100 43-144 69-203 (247)
213 3t34_A Dynamin-related protein 91.1 0.038 1.3E-06 44.2 -0.1 91 43-139 135-251 (360)
214 4fid_A G protein alpha subunit 90.8 0.033 1.1E-06 45.0 -0.8 23 123-145 302-324 (340)
215 1xjc_A MOBB protein homolog; s 90.2 0.33 1.1E-05 35.2 4.3 47 7-55 54-108 (169)
216 1n0u_A EF-2, elongation factor 86.3 0.27 9.2E-06 44.1 1.8 58 43-102 97-163 (842)
217 2ged_A SR-beta, signal recogni 86.3 0.5 1.7E-05 33.2 3.0 71 43-117 90-182 (193)
218 1j8m_F SRP54, signal recogniti 86.1 0.45 1.5E-05 37.3 2.9 89 42-139 179-281 (297)
219 1ni3_A YCHF GTPase, YCHF GTP-b 80.3 1.5 5.2E-05 35.8 3.9 50 92-143 227-301 (392)
220 2dby_A GTP-binding protein; GD 80.2 0.44 1.5E-05 38.6 0.6 42 92-137 204-250 (368)
221 1tq4_A IIGP1, interferon-induc 79.5 1.1 3.8E-05 36.9 2.8 51 92-144 178-248 (413)
222 1zu4_A FTSY; GTPase, signal re 76.8 1.1 3.6E-05 35.5 1.9 89 41-138 189-295 (320)
223 2qag_B Septin-6, protein NEDD5 73.8 1.3 4.5E-05 36.7 1.8 59 68-130 152-217 (427)
224 3e70_C DPA, signal recognition 71.2 1.7 5.7E-05 34.5 1.8 89 42-138 210-309 (328)
225 4a9a_A Ribosome-interacting GT 71.1 4.8 0.00016 32.6 4.5 43 92-143 252-294 (376)
226 3ec1_A YQEH GTPase; atnos1, at 70.3 0.67 2.3E-05 37.3 -0.8 89 45-138 213-320 (369)
227 2xxa_A Signal recognition part 67.1 13 0.00043 30.6 6.3 62 42-104 182-255 (433)
228 3def_A T7I23.11 protein; chlor 65.6 6.1 0.00021 29.6 3.9 13 92-104 154-166 (262)
229 1h65_A Chloroplast outer envel 63.7 5.9 0.0002 29.8 3.5 61 44-104 87-169 (270)
230 1np6_A Molybdopterin-guanine d 63.5 3.4 0.00012 29.6 2.0 38 17-54 62-111 (174)
231 4dzz_A Plasmid partitioning pr 62.5 3 0.0001 29.5 1.5 61 42-104 74-145 (206)
232 2yhs_A FTSY, cell division pro 62.4 17 0.00058 30.7 6.3 90 41-139 373-480 (503)
233 3cio_A ETK, tyrosine-protein k 62.3 2.4 8.3E-05 32.9 1.0 36 42-77 212-249 (299)
234 2ffh_A Protein (FFH); SRP54, s 61.5 7.4 0.00025 32.0 3.9 87 42-137 179-277 (425)
235 3iwt_A 178AA long hypothetical 57.6 5.7 0.0002 28.2 2.3 45 4-53 42-89 (178)
236 3la6_A Tyrosine-protein kinase 56.9 12 0.0004 28.8 4.2 59 43-104 201-269 (286)
237 3iwp_A Copper homeostasis prot 55.9 12 0.00041 29.4 4.1 50 2-54 135-188 (287)
238 1jal_A YCHF protein; nucleotid 52.0 21 0.00071 28.7 5.0 37 92-132 202-240 (363)
239 2bdq_A Copper homeostasis prot 51.6 20 0.00068 27.1 4.5 51 2-55 100-156 (224)
240 3sop_A Neuronal-specific septi 51.0 8.5 0.00029 29.3 2.4 48 66-117 113-166 (270)
241 3bfv_A CAPA1, CAPB2, membrane 49.1 2 6.7E-05 32.9 -1.5 61 42-103 190-258 (271)
242 1twd_A Copper homeostasis prot 48.1 23 0.00078 27.3 4.4 51 2-55 97-151 (256)
243 2xj4_A MIPZ; replication, cell 47.4 33 0.0011 25.8 5.3 34 42-75 102-136 (286)
244 2pbq_A Molybdenum cofactor bio 46.1 13 0.00046 26.5 2.7 48 4-53 27-76 (178)
245 2px0_A Flagellar biosynthesis 45.4 21 0.00073 27.5 4.0 85 42-136 181-278 (296)
246 1ko7_A HPR kinase/phosphatase; 45.1 9.8 0.00033 30.1 2.0 48 86-144 79-126 (314)
247 3h2y_A GTPase family protein; 44.6 0.98 3.3E-05 36.4 -4.0 37 92-131 276-312 (368)
248 3ea0_A ATPase, para family; al 42.6 27 0.00092 25.1 4.0 71 43-116 118-197 (245)
249 2oze_A ORF delta'; para, walke 39.4 33 0.0011 25.6 4.2 60 42-104 153-227 (298)
250 2is8_A Molybdopterin biosynthe 36.7 19 0.00065 25.3 2.2 45 4-53 23-70 (164)
251 1mkz_A Molybdenum cofactor bio 34.3 23 0.0008 25.1 2.4 45 4-53 30-77 (172)
252 1y5e_A Molybdenum cofactor bio 31.3 17 0.00059 25.6 1.3 45 4-53 33-80 (169)
253 1uuy_A CNX1, molybdopterin bio 30.0 30 0.001 24.2 2.4 34 18-53 43-79 (167)
254 3qxc_A Dethiobiotin synthetase 28.8 44 0.0015 25.0 3.3 93 42-143 130-238 (242)
255 2pjk_A 178AA long hypothetical 28.7 32 0.0011 24.6 2.3 35 17-53 52-89 (178)
256 1ihu_A Arsenical pump-driving 27.8 1.3E+02 0.0043 25.1 6.2 50 92-142 522-581 (589)
257 3of5_A Dethiobiotin synthetase 27.3 37 0.0013 25.0 2.5 93 42-142 109-217 (228)
258 3c6f_A YETF protein; uncharact 26.0 27 0.00092 24.6 1.5 45 1-55 20-66 (153)
259 3fgn_A Dethiobiotin synthetase 25.4 54 0.0019 24.7 3.2 36 42-77 125-169 (251)
260 3kjh_A CO dehydrogenase/acetyl 24.5 77 0.0026 22.4 3.8 71 41-116 129-206 (254)
261 1di6_A MOGA, molybdenum cofact 23.9 45 0.0015 24.2 2.4 46 3-53 24-74 (195)
262 2ohf_A Protein OLA1, GTP-bindi 23.7 30 0.001 28.2 1.5 39 92-132 225-267 (396)
263 1byi_A Dethiobiotin synthase; 23.1 57 0.0019 23.0 2.8 13 42-54 107-119 (224)
264 2ph1_A Nucleotide-binding prot 23.0 71 0.0024 23.4 3.4 59 42-101 127-194 (262)
265 1jlj_A Gephyrin; globular alph 22.8 53 0.0018 23.6 2.6 46 6-53 38-86 (189)
266 2pk8_A Uncharacterized protein 22.3 51 0.0017 21.6 2.1 27 23-49 10-41 (103)
267 3q9l_A Septum site-determining 20.5 79 0.0027 22.7 3.2 34 43-76 113-147 (260)
268 1cp2_A CP2, nitrogenase iron p 20.1 59 0.002 23.7 2.5 35 42-76 114-152 (269)
No 1
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.55 E-value=1.5e-14 Score=117.81 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=83.2
Q ss_pred CCCChhhhhhhhhc------------CCCeeeeeccchhhchHHHHHhhhhcCCCEEEEecCCceeeeeeccccCceEEE
Q 032030 3 NGALPEERIRAVET------------GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIY 70 (148)
Q Consensus 3 ~~~~~~~~~~~~~~------------nGcicc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~~~~~~~~~~~~d~~i~ 70 (148)
.|++.++++++... ++|.|+.+.... .+++ ......++|++||+|+|+.......-..+|.+++
T Consensus 123 ~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t---~d~i-~~~~~~~~~~iiiDTpGi~~~~~~~~~~aD~vl~ 198 (355)
T 3p32_A 123 GGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRAT---RETV-VLLEAAGFDVILIETVGVGQSEVAVANMVDTFVL 198 (355)
T ss_dssp ----------CHHHHTCTTEEEECCC--CCHHHHHHHH---HHHH-HHHHHTTCCEEEEEECSCSSHHHHHHTTCSEEEE
T ss_pred cchhccchhhHHhhccCCCeeEEECCCCccccchhHHH---HHHH-HHHhhCCCCEEEEeCCCCCcHHHHHHHhCCEEEE
Confidence 46777788776543 344444322111 2334 3444568999999999976542222257899999
Q ss_pred EEeCCCCCCccccCCCCcceeeEEEEecCCCCCchhhhHHH----HHHHHHhcC-----CCCcEEEEEecCCCCHHHHHH
Q 032030 71 IIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAV----MERDALRMR-----DGGPFIFAQVGWVIGIIFTLS 141 (148)
Q Consensus 71 vvDa~~~~~~~~~~~~qi~~ADivViNK~DL~~~~~~~l~~----~~~~i~~~n-----p~a~vi~tSa~~g~gi~~l~~ 141 (148)
|+|+..++..+......++.++++|+||+|+.+. ...+. +.+.++..+ ...|++++||++|.|+++|++
T Consensus 199 V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~ 276 (355)
T 3p32_A 199 LTLARTGDQLQGIKKGVLELADIVVVNKADGEHH--KEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWD 276 (355)
T ss_dssp EEESSTTCTTTTCCTTSGGGCSEEEEECCCGGGH--HHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHH
T ss_pred EECCCCCccHHHHHHhHhhcCCEEEEECCCCcCh--hHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHH
Confidence 9999877665444444566789999999999866 44433 333333333 257899999999999999998
Q ss_pred hhh
Q 032030 142 ITH 144 (148)
Q Consensus 142 ~~~ 144 (148)
++.
T Consensus 277 ~i~ 279 (355)
T 3p32_A 277 TVE 279 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 2
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.49 E-value=7.4e-14 Score=113.76 Aligned_cols=135 Identities=18% Similarity=0.149 Sum_probs=70.6
Q ss_pred CCChhhhhhhhh------------cCCCeeeeeccchhhchHHHHHhhhhcCCCEEEEecCCceeeeeeccccCceEEEE
Q 032030 4 GALPEERIRAVE------------TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYI 71 (148)
Q Consensus 4 ~~~~~~~~~~~~------------~nGcicc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~~~~~~~~~~~~d~~i~v 71 (148)
|++.+++.|+.. .++|.||+.-.+. .+++. ++...++|++|+||+|+..........+|.+++|
T Consensus 119 g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr~~---~~~~~-~~~~~~~~~iliDT~Gi~~~~~~l~~~~d~vl~V 194 (349)
T 2www_A 119 GSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTT---NEAIL-LCEGAGYDIILIETVGVGQSEFAVADMVDMFVLL 194 (349)
T ss_dssp ----------CCSTTCTTEEEECC---------CTTH---HHHHH-HHHHTTCSEEEEECCCC--CHHHHHTTCSEEEEE
T ss_pred cchhchHHHHHHhcCCCCEEEEecCCccccccchHHH---HHHHH-hhccCCCCEEEEECCCcchhhhhHHhhCCEEEEE
Confidence 667677766532 2356665443333 33333 2334689999999999764321113568999999
Q ss_pred EeCCCCCCccccCCCCcceeeEEEEecCCCCCchhhhH----HHHHHHHHhcCC-----CCcEEEEEecCCCCHHHHHHh
Q 032030 72 IDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADL----AVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSI 142 (148)
Q Consensus 72 vDa~~~~~~~~~~~~qi~~ADivViNK~DL~~~~~~~l----~~~~~~i~~~np-----~a~vi~tSa~~g~gi~~l~~~ 142 (148)
+|+..++..+......++.++++|+||+|+.+. ... +.+.+.++..+| ..+++++||++|.|+++|+++
T Consensus 195 ~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~~~--~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~ 272 (349)
T 2www_A 195 LPPAGGDELQGIKRGIIEMADLVAVTKSDGDLI--VPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDK 272 (349)
T ss_dssp ECCC------------CCSCSEEEECCCSGGGH--HHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHH
T ss_pred EcCCcchhHHHhHHHHHhcCCEEEEeeecCCCc--hhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHH
Confidence 999876543322223455679999999999865 332 334444443444 468999999999999999988
Q ss_pred hh
Q 032030 143 TH 144 (148)
Q Consensus 143 ~~ 144 (148)
+.
T Consensus 273 I~ 274 (349)
T 2www_A 273 MK 274 (349)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 3
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.46 E-value=1.9e-14 Score=108.17 Aligned_cols=121 Identities=27% Similarity=0.305 Sum_probs=82.4
Q ss_pred CCCeeeeeccchhhchHHHHHhhhhcCCCEEEEecCCcee-eeeeccccCceEEEEEeCCCCCCccccCCCCcceeeEEE
Q 032030 17 GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL-AANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLV 95 (148)
Q Consensus 17 nGcicc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~~~-~~~~~~~~~d~~i~vvDa~~~~~~~~~~~~qi~~ADivV 95 (148)
+||.||...+.+.. .+. ...++|++++||+|... +..+. ...+..++|+|+..+.........+...++++|
T Consensus 88 ~~~~~~~~~~~~~~---~~~---~~~~~d~iiidt~G~~~~~~~~~-~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv 160 (221)
T 2wsm_A 88 TGKECHLDAHMIYH---RLK---KFSDCDLLLIENVGNLICPVDFD-LGENYRVVMVSVTEGDDVVEKHPEIFRVADLIV 160 (221)
T ss_dssp CTTCSSCCHHHHHT---TGG---GGTTCSEEEEEEEEBSSGGGGCC-CSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEE
T ss_pred CCceeecccHHHHH---HHH---hcCCCCEEEEeCCCCCCCCchhc-cccCcEEEEEeCCCcchhhhhhhhhhhcCCEEE
Confidence 67777644332211 111 23479999999999522 22221 235678999999877543222222345668999
Q ss_pred EecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 96 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 96 iNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+||+|+.+....+.+.+.+.+++.+|.++++++||++|.|++++++++.
T Consensus 161 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~ 209 (221)
T 2wsm_A 161 INKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLR 209 (221)
T ss_dssp EECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHH
T ss_pred EecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHH
Confidence 9999997531125677888888888889999999999999999999875
No 4
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.40 E-value=8.4e-13 Score=107.10 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=85.8
Q ss_pred CCChhhhhhh----hhcCCCe-----eeeeccchhhchHHHHHhhhhcCCCEEEEecCCceeeeeeccccCceEEEEEeC
Q 032030 4 GALPEERIRA----VETGGCP-----HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDV 74 (148)
Q Consensus 4 ~~~~~~~~~~----~~~nGci-----cc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~~~~~~~~~~~~d~~i~vvDa 74 (148)
|++.+.|.++ ++.++++ ||++.+...+..+++. +....++|++||||+|+.....-....+|.+++++|+
T Consensus 100 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~-~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~ 178 (337)
T 2qm8_A 100 GSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETML-LCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLP 178 (337)
T ss_dssp CCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHH-HHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECS
T ss_pred cchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHH-HHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcC
Confidence 3444444433 3355555 4555554444444442 3445689999999999875421123578999999998
Q ss_pred CCCCCccccCCCCcceeeEEEEecCCCCCchhhh-----HHHHHHHHHhcCC-----CCcEEEEEecCCCCHHHHHHhhh
Q 032030 75 SGGDKIPRKGGPGITQADLLVINKTDLASAIGAD-----LAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 75 ~~~~~~~~~~~~qi~~ADivViNK~DL~~~~~~~-----l~~~~~~i~~~np-----~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..+++.........+.++++++||+|+.+. .. .+++...+.-.+| ..+++++||++|.|+++|++.+.
T Consensus 179 ~~~~~~~~i~~~i~~~~~ivvlNK~Dl~~~--~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 179 GAGDELQGIKKGIFELADMIAVNKADDGDG--ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp CC------CCTTHHHHCSEEEEECCSTTCC--HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred CCcccHHHHHHHHhccccEEEEEchhccCc--hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHH
Confidence 766543322233346679999999998764 32 2333333333443 46899999999999999998764
No 5
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.40 E-value=5.2e-14 Score=113.13 Aligned_cols=119 Identities=22% Similarity=0.283 Sum_probs=85.3
Q ss_pred cCCCeeeeeccchhhchHHHHHhh---hhcC--CCEEEEecCCceeee----ee--cc-----ccCceEEEEEeCCCCCC
Q 032030 16 TGGCPHAAIREDISINLGPLEELS---NLFK--ADLLLCESGGDNLAA----NF--SR-----ELADYIIYIIDVSGGDK 79 (148)
Q Consensus 16 ~nGcicc~i~~dl~~~~~al~~l~---~~~~--~D~IliEtsG~~~~~----~~--~~-----~~~d~~i~vvDa~~~~~ 79 (148)
+|||+||++++++... +..+. +... +|++++|++|++.+. .+ .+ ...+.+++++|+.+..+
T Consensus 61 ~~gCicc~~~~~~~~~---l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~ 137 (318)
T 1nij_A 61 TNGCICCSRSNELEDA---LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE 137 (318)
T ss_dssp TTSCEEECTTSCHHHH---HHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHH
T ss_pred CCCceEEcccHHHHHH---HHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHH
Confidence 5999999999998554 44442 3333 599999999987432 22 11 12355689999876543
Q ss_pred cccc---CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHh
Q 032030 80 IPRK---GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 142 (148)
Q Consensus 80 ~~~~---~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~ 142 (148)
.... ...|...||++++||.|+.++ . +++.+.++++||.+.|+.+|.. ...++.+++.
T Consensus 138 ~~~~ls~g~~Q~~~ad~ill~k~dl~de--~--~~l~~~l~~l~~~~~ii~~sh~-~~~~~~l~~~ 198 (318)
T 1nij_A 138 QMNQFTIAQSQVGYADRILLTKTDVAGE--A--EKLHERLARINARAPVYTVTHG-DIDLGLLFNT 198 (318)
T ss_dssp HHHHCHHHHHHHHTCSEEEEECTTTCSC--T--HHHHHHHHHHCSSSCEEECCSS-CCCGGGGSCC
T ss_pred HHhhchHHHHHHHhCCEEEEECcccCCH--H--HHHHHHHHHhCCCCeEEEeccc-CCCHHHHhCC
Confidence 2111 124788999999999999977 5 7888889999999999999975 5677766653
No 6
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.38 E-value=2.2e-13 Score=102.59 Aligned_cols=123 Identities=32% Similarity=0.363 Sum_probs=83.8
Q ss_pred CCCeeeeeccchhhchHHHHHhhhhcCCCEEEEecCCcee-eeeeccccCceEEEEEeCCCCCCccccCCCCcceeeEEE
Q 032030 17 GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL-AANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLV 95 (148)
Q Consensus 17 nGcicc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~~~-~~~~~~~~~d~~i~vvDa~~~~~~~~~~~~qi~~ADivV 95 (148)
+||.||.-..|. .+.+..+ ...++|++++|++|... ...|. ...+..+.++|+..+...+..+..++..++++|
T Consensus 96 ~~~~~~l~~~~~---~~~~~~l-~~~~~d~~~id~~g~i~~~~s~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv 170 (226)
T 2hf9_A 96 TGKECHLDAHLV---GHALEDL-NLDEIDLLFIENVGNLICPADFD-LGTHKRIVVISTTEGDDTIEKHPGIMKTADLIV 170 (226)
T ss_dssp CTTCSSCCHHHH---HHHHTTS-CGGGCSEEEEECCSCSSGGGGCC-CSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEE
T ss_pred CCceEeccHHHH---HHHHHHH-hcCCCCEEEEeCCCCccCcchhh-hccCcEEEEEecCcchhhHhhhhhHhhcCCEEE
Confidence 588876433332 2223222 23478999999999633 23342 334555788887655544433334566779999
Q ss_pred EecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 96 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 96 iNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+||+|+.+.-....+.+.+.+++.++.++++++||++|.|++++++++.
T Consensus 171 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 219 (226)
T 2hf9_A 171 INKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIE 219 (226)
T ss_dssp EECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred EeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHH
Confidence 9999997541124667778888888889999999999999999999875
No 7
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.34 E-value=1.6e-12 Score=105.42 Aligned_cols=138 Identities=17% Similarity=0.123 Sum_probs=78.2
Q ss_pred CCChhhhhhhh----hcCCCeeeeeccchhh-----chHHHHHhhhhcCCCEEEEecCCceeeeeeccccCceEEEEEeC
Q 032030 4 GALPEERIRAV----ETGGCPHAAIREDISI-----NLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDV 74 (148)
Q Consensus 4 ~~~~~~~~~~~----~~nGcicc~i~~dl~~-----~~~al~~l~~~~~~D~IliEtsG~~~~~~~~~~~~d~~i~vvDa 74 (148)
|++.+++.++. ..++|+||...+++.. ..+.+. .....+++++||+|.|...........+|.+++|+|+
T Consensus 101 ~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~i~liDTpG~~~~~~~~~~~aD~vl~Vvd~ 179 (341)
T 2p67_A 101 GSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELML-LCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIA 179 (341)
T ss_dssp ----------CTTTTCTTEEEEEECC-----CHHHHHHHHHH-HHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC
T ss_pred cceecccchHHhhccCCCceeecCccccccchhHHHHHHHHH-HhhccCCCEEEEeCCCccchHHHHHHhCCEEEEEEeC
Confidence 55555555542 2588999866443221 122221 2224589999999999764322123578999999999
Q ss_pred CCCCCccccCCCCcceeeEEEEecCCCCCchhhhHHH----HHHHHHhcCC-----CCcEEEEEecCCCCHHHHHHhhh
Q 032030 75 SGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAV----MERDALRMRD-----GGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 75 ~~~~~~~~~~~~qi~~ADivViNK~DL~~~~~~~l~~----~~~~i~~~np-----~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..++..+.....+....+++|+||+|+.+. ..... +.+.++..++ ..+++++||++|.|+++|++++.
T Consensus 180 ~~~~~~~~l~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~ 256 (341)
T 2p67_A 180 GGGDDLQGIKKGLMEVADLIVINKDDGDNH--TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAII 256 (341)
T ss_dssp ------CCCCHHHHHHCSEEEECCCCTTCH--HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHH
T ss_pred CccHHHHHHHHhhhcccCEEEEECCCCCCh--HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHH
Confidence 776543222112234568999999999876 44443 3333333343 46899999999999999998764
No 8
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.97 E-value=8e-11 Score=90.46 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=65.4
Q ss_pred CCCEEEEecCCceeeeee---------ccccCceEEEEEeCCCCCCcccc---------CCCCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNLAANF---------SRELADYIIYIIDVSGGDKIPRK---------GGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---------~~~~~d~~i~vvDa~~~~~~~~~---------~~~qi~~ADivViNK~DL~~~ 104 (148)
++|+++++|.|..-.... .-.. +.+++++|+......... ...+.....++|+||+|+.+.
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 589999999997532110 0123 677999998655331110 001123347999999999876
Q ss_pred hhhhHHHHHHH----------------------------HHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 105 IGADLAVMERD----------------------------ALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 105 ~~~~l~~~~~~----------------------------i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+.+.+.+. +++.++..+++++||++|.|+++|++++.-
T Consensus 187 --~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~ 253 (262)
T 1yrb_A 187 --EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE 253 (262)
T ss_dssp --HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHH
T ss_pred --ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHH
Confidence 443333322 245566678999999999999999998753
No 9
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.79 E-value=6.3e-09 Score=82.94 Aligned_cols=99 Identities=16% Similarity=0.108 Sum_probs=70.4
Q ss_pred CCCEEEEecCCceeee-------ee------ccccCceEEEEEeCCCCCCc-------cccCCCCcceeeEEEEecCCCC
Q 032030 43 KADLLLCESGGDNLAA-------NF------SRELADYIIYIIDVSGGDKI-------PRKGGPGITQADLLVINKTDLA 102 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~-------~~------~~~~~d~~i~vvDa~~~~~~-------~~~~~~qi~~ADivViNK~DL~ 102 (148)
+..++|+.|.|..... .+ .-..+|.+++|+|+..+... .......++ .++|+||+|+.
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~p--vilV~NK~Dl~ 135 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKP--VIVVINKIDKI 135 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCC--EEEEEECGGGS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCC--EEEEEECccCC
Confidence 5679999999974321 00 11357999999999876431 111111233 79999999998
Q ss_pred -CchhhhHHHHHHHHHhcC-CCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 103 -SAIGADLAVMERDALRMR-DGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 103 -~~~~~~l~~~~~~i~~~n-p~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+. ..+....+.+++.. +..+++++||++|.|++++++++.-
T Consensus 136 ~~~--~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~ 178 (308)
T 3iev_A 136 GPA--KNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILK 178 (308)
T ss_dssp SSG--GGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 66 55666666666555 6789999999999999999998753
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.68 E-value=3.6e-08 Score=73.42 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=66.4
Q ss_pred CCCEEEEecCCceee--------------eee--ccccCceEEEEEeCCCCCCcc-----c-cCCCCcceeeEEEEecCC
Q 032030 43 KADLLLCESGGDNLA--------------ANF--SRELADYIIYIIDVSGGDKIP-----R-KGGPGITQADLLVINKTD 100 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--------------~~~--~~~~~d~~i~vvDa~~~~~~~-----~-~~~~qi~~ADivViNK~D 100 (148)
+..+.++.|.|.... ..+ .....|.+++|+|+.++.... . ......+ -++|+||+|
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p--~i~v~nK~D 155 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP--IHSLLTKCD 155 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC--EEEEEECGG
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC--EEEEEeccc
Confidence 467889999995321 001 012367799999998753310 1 1112334 799999999
Q ss_pred CCCchhhhHH----HHHHHHHhc-----CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 101 LASAIGADLA----VMERDALRM-----RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 101 L~~~~~~~l~----~~~~~i~~~-----np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+.+. .+++ .+.+.++.. .+..+++++||++|.|++++++++.-
T Consensus 156 l~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 207 (223)
T 4dhe_A 156 KLTR--QESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIES 207 (223)
T ss_dssp GSCH--HHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHH
T ss_pred cCCh--hhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHH
Confidence 9987 5543 344455443 46789999999999999999998753
No 11
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.51 E-value=3.1e-07 Score=67.78 Aligned_cols=98 Identities=12% Similarity=0.015 Sum_probs=62.4
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc-------cc----CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP-------RK----GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~-------~~----~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.++.|.|........ -..+|.+++|+|+.....+. .. ....++ -++|+||+|+.+. ...
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~NK~Dl~~~--~~~ 144 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP--ILILGNKIDRPEA--ISE 144 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC--EEEEEECTTSTTC--CCH
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc--EEEEEECCCcccc--CCH
Confidence 455566666643211111 12578899999998764211 00 012344 5999999999875 445
Q ss_pred HHHHHHHHhcC---------------CCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRMR---------------DGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~n---------------p~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+++.+.++... ...+++++||++|.|++++++++.-
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 145 ERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp HHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred HHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 56666665321 3468999999999999999999864
No 12
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.48 E-value=1.3e-07 Score=68.39 Aligned_cols=99 Identities=13% Similarity=0.065 Sum_probs=64.4
Q ss_pred CCCEEEEecCCceee--------------eee--ccccCceEEEEEeCCCCCCcc-----c-cCCCCcceeeEEEEecCC
Q 032030 43 KADLLLCESGGDNLA--------------ANF--SRELADYIIYIIDVSGGDKIP-----R-KGGPGITQADLLVINKTD 100 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--------------~~~--~~~~~d~~i~vvDa~~~~~~~-----~-~~~~qi~~ADivViNK~D 100 (148)
+..+.+++|.|.... ..+ .....|.+++|+|+....... . ......+ -++|+||+|
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p--~i~v~nK~D 144 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIP--FTIVLTKMD 144 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC--EEEEEECGG
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCC--EEEEEEChh
Confidence 346788999995311 001 012348889999987653311 0 0011233 799999999
Q ss_pred CCCchhhhHHHHHHHHHhcC---CCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 101 LASAIGADLAVMERDALRMR---DGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 101 L~~~~~~~l~~~~~~i~~~n---p~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+.++ .+++...+.+++.. ...+++++||++|.|++++++++.-
T Consensus 145 l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 190 (195)
T 3pqc_A 145 KVKM--SERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLIST 190 (195)
T ss_dssp GSCG--GGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred cCCh--HHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHH
Confidence 9987 66555444444322 3468999999999999999998753
No 13
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=5.8e-07 Score=65.15 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=62.0
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc-------cc--C--CCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP-------RK--G--GPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~-------~~--~--~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.++++.|........ -..+|.+++|+|+.....+. .. . ....+ -++|+||+|+.+. ...
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~NK~Dl~~~--~~~ 135 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG--LLIFANKQDVKEC--MTV 135 (187)
T ss_dssp EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE--EEEEEECTTSTTC--CCH
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe--EEEEEECCCCcCC--CCH
Confidence 345566666643211111 13578899999998764311 00 0 12344 6999999999876 445
Q ss_pred HHHHHHHHhc---CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~---np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+++.+.+... ....+++++||++|.|++++++++.-
T Consensus 136 ~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (187)
T 1zj6_A 136 AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 174 (187)
T ss_dssp HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHH
Confidence 5665555421 23458999999999999999998753
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.45 E-value=2.7e-07 Score=67.12 Aligned_cols=99 Identities=15% Similarity=0.032 Sum_probs=64.4
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc-------ccCC-----------CCcceeeEEEEecCCC
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP-------RKGG-----------PGITQADLLVINKTDL 101 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~-------~~~~-----------~qi~~ADivViNK~DL 101 (148)
...+.+++|.|.-...... -..+|.+++|+|+.....+. .... ..++ -++|+||+|+
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p--iilv~NK~Dl 139 (199)
T 4bas_A 62 RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP--FLFFANKMDA 139 (199)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC--EEEEEECTTS
T ss_pred CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC--EEEEEECcCC
Confidence 4556677777753211111 13578899999998764311 0001 1333 6999999999
Q ss_pred CCchhhhHHHHHHHHHh----cCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 102 ASAIGADLAVMERDALR----MRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 102 ~~~~~~~l~~~~~~i~~----~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+. ...+.+.+.+.. .....+++++||++|.|++++++++.-
T Consensus 140 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (199)
T 4bas_A 140 AGA--KTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQE 185 (199)
T ss_dssp TTC--CCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CCC--CCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHH
Confidence 887 555555544421 235568999999999999999998753
No 15
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.43 E-value=8.6e-07 Score=62.63 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=64.0
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc-------cc-CC---CCcceeeEEEEecCCCCCchhhh
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP-------RK-GG---PGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~-------~~-~~---~qi~~ADivViNK~DL~~~~~~~ 108 (148)
+..+.+++|.|........ -..+|.+++|+|+.....+. .. .. ...+ -++|+||+|+.+. ..
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~ 125 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI--LVVFANKQDMEQA--MT 125 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE--EEEEEECTTSTTC--CC
T ss_pred CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE--EEEEEECCCCcCC--CC
Confidence 3456677777753211111 13578899999998764321 00 11 2344 6999999999886 55
Q ss_pred HHHHHHHHHh---cCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 109 LAVMERDALR---MRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 109 l~~~~~~i~~---~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+.+.+.+.. .....+++++||++|.|++++++++.-
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (171)
T 1upt_A 126 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 165 (171)
T ss_dssp HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHH
Confidence 5555555432 123458999999999999999998764
No 16
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.42 E-value=9e-07 Score=63.45 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=60.4
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc-------ccC----CCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP-------RKG----GPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~-------~~~----~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.++++.|........ -..+|.+++|+|+....... ... ....+ -++|+||+|+.+. ...
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~ 137 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA--LLVFANKQDQPGA--LSA 137 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE--EEEEEECTTSTTC--CCH
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe--EEEEEECCCCCCC--CCH
Confidence 445666777753211111 12468889999987764321 111 12344 6999999999876 545
Q ss_pred HHHHHHHHhc---CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~---np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.+.+.+... ....+++++||++|.|++++++++.
T Consensus 138 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (183)
T 1moz_A 138 SEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 175 (183)
T ss_dssp HHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred HHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 5555554321 2334899999999999999999875
No 17
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.40 E-value=4.7e-07 Score=65.69 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=65.2
Q ss_pred CCEEEEecCCceee--------------eeec--cccCceEEEEEeCCCCCCccc-----c-CCCCcceeeEEEEecCCC
Q 032030 44 ADLLLCESGGDNLA--------------ANFS--RELADYIIYIIDVSGGDKIPR-----K-GGPGITQADLLVINKTDL 101 (148)
Q Consensus 44 ~D~IliEtsG~~~~--------------~~~~--~~~~d~~i~vvDa~~~~~~~~-----~-~~~qi~~ADivViNK~DL 101 (148)
..+.+++|.|.... ..+. ....|.+++|+|+..+..... . .....+ -++|+||+|+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p--~i~v~nK~Dl 146 (195)
T 1svi_A 69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP--VIVIATKADK 146 (195)
T ss_dssp TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC--EEEEEECGGG
T ss_pred CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC--EEEEEECccc
Confidence 36788999995321 0010 112388899999887643211 0 112334 7999999999
Q ss_pred CCchhhhHHHHHHHHHh-c--CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 102 ASAIGADLAVMERDALR-M--RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 102 ~~~~~~~l~~~~~~i~~-~--np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.++ .+++...+.+++ + .+..+++++||++|.|++++++++.-
T Consensus 147 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 191 (195)
T 1svi_A 147 IPK--GKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK 191 (195)
T ss_dssp SCG--GGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCh--HHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHH
Confidence 987 666554444443 2 35679999999999999999998764
No 18
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.37 E-value=8.9e-07 Score=64.80 Aligned_cols=97 Identities=11% Similarity=0.151 Sum_probs=61.2
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc----------cCC----CCcceeeEEEEecCCCCCchh
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR----------KGG----PGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~----------~~~----~qi~~ADivViNK~DL~~~~~ 106 (148)
+.+.++++.|....... .-..+|.+++|+|+........ ... ..++ -++|+||+|+.+. .
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~-~ 133 (207)
T 1vg8_A 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP--FVVLGNKIDLENR-Q 133 (207)
T ss_dssp EEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC--EEEEEECTTSSCC-C
T ss_pred EEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc--EEEEEECCCCccc-c
Confidence 45677888885321111 1135788999999876532100 000 1233 5999999999854 0
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+...+..+ .....+++++||++|.|++++++++.
T Consensus 134 ~~~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (207)
T 1vg8_A 134 VATKRAQAWCY-SKNNIPYFETSAKEAINVEQAFQTIA 170 (207)
T ss_dssp SCHHHHHHHHH-HTTSCCEEECBTTTTBSHHHHHHHHH
T ss_pred cCHHHHHHHHH-hcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 12234444443 24567899999999999999999875
No 19
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.37 E-value=1.4e-06 Score=63.01 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=62.9
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc-------cc-C---CCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP-------RK-G---GPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~-------~~-~---~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.+++|.|........ -..+|.+++|+|+.....+. .. . ....+ -++|+||+|+.+. ...
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~ 141 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL--LLIFANKQDLPDA--ASE 141 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE--EEEEEECTTSTTC--CCH
T ss_pred EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe--EEEEEECCCCcCC--CCH
Confidence 456677777753211111 13568899999998764321 00 1 12344 6999999999876 555
Q ss_pred HHHHHHHHh---cCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALR---MRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~---~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+++.+.+.. .....+++++||++|.|++++++++.-
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 180 (189)
T 2x77_A 142 AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVE 180 (189)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHH
Confidence 555554431 123448999999999999999998753
No 20
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.37 E-value=5.5e-07 Score=65.92 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=63.1
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc-------cc----CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP-------RK----GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~-------~~----~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.++.|.|........ -..+|.+++|+|+....... .. .....+ -++|+||+|+.+. ...
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~NK~Dl~~~--~~~ 142 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP--FVILGNKIDAPNA--VSE 142 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC--EEEEEECTTSTTC--CCH
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC--EEEEEECCCCcCC--CCH
Confidence 345566666643211111 13568899999998764311 00 012344 5999999999875 445
Q ss_pred HHHHHHHHhcC----------CCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRMR----------DGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~n----------p~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+++.+.++... ...+++++||++|.|++++++++.-
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 143 AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp HHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred HHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 56666554321 3468999999999999999998753
No 21
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.35 E-value=1.2e-06 Score=63.17 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=62.3
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc-------cc-C---CCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP-------RK-G---GPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~-------~~-~---~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.++++.|....... .-..+|.+++|+|+.....+. .. . ....+ -++|+||+|+.+. ...
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~NK~Dl~~~--~~~ 140 (181)
T 2h17_A 65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG--LLIFANKQDVKEC--MTV 140 (181)
T ss_dssp EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE--EEEEEECTTSTTC--CCH
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe--EEEEEECCCcccC--CCH
Confidence 45667777775321111 113568899999998764321 00 1 12344 5899999999876 444
Q ss_pred HHHHHHHHh---cCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALR---MRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~---~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.+.+.+.. .....+++++||++|.|++++++++.
T Consensus 141 ~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 141 AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 178 (181)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 555554421 12344899999999999999999875
No 22
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.34 E-value=1.5e-06 Score=62.74 Aligned_cols=96 Identities=16% Similarity=0.086 Sum_probs=63.2
Q ss_pred CEEEEecCCceeeeeec---cccCceEEEEEeCCCCC------C---ccc------cCCCCcceeeEEEEecCCCCCchh
Q 032030 45 DLLLCESGGDNLAANFS---RELADYIIYIIDVSGGD------K---IPR------KGGPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 45 D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~------~---~~~------~~~~qi~~ADivViNK~DL~~~~~ 106 (148)
.+.++.|.|.-....+. -..+|.+++|+|+..+. . +.. .....++ -++|+||+|+.+.
T Consensus 75 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p--iilv~NK~Dl~~~-- 150 (198)
T 3t1o_A 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP--IVIQVNKRDLPDA-- 150 (198)
T ss_dssp EEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC--EEEEEECTTSTTC--
T ss_pred EEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC--EEEEEEchhcccc--
Confidence 45667777743211111 13578899999997431 0 100 0113444 6899999999887
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+.+.+..+..+ ..+++++||++|.|++++++++.-
T Consensus 151 ~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~~l~~ 188 (198)
T 3t1o_A 151 LPVEMVRAVVDPEG-KFPVLEAVATEGKGVFETLKEVSR 188 (198)
T ss_dssp CCHHHHHHHHCTTC-CSCEEECBGGGTBTHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcC-CceEEEEecCCCcCHHHHHHHHHH
Confidence 66667777776432 238999999999999999998763
No 23
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.34 E-value=1.3e-06 Score=63.34 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=65.6
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc-------c--cCC----CCcceeeEEEEecCCCCCchh
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP-------R--KGG----PGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~-------~--~~~----~qi~~ADivViNK~DL~~~~~ 106 (148)
+..+.++++.|....... .-..+|.+++|+|+.....+. . ... ...+ -++|+||+|+.+.
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~-- 141 (190)
T 2h57_A 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP--ILFFANKMDLRDA-- 141 (190)
T ss_dssp SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC--EEEEEECTTSTTC--
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe--EEEEEeCcCcccC--
Confidence 356778888885321111 113578899999997652210 0 000 2334 6899999999876
Q ss_pred hhHHHHHHHHH--hcC-CCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 107 ADLAVMERDAL--RMR-DGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 107 ~~l~~~~~~i~--~~n-p~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+.+.+.++ .+. ...+++++||++|.|++++++++.-
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 183 (190)
T 2h57_A 142 VTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQD 183 (190)
T ss_dssp CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHH
Confidence 55566666663 222 3568999999999999999998764
No 24
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.34 E-value=1.6e-06 Score=61.64 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=59.1
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------cc----CCCCcceeeEEEEecCCCCCchh
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RK----GGPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~----~~~qi~~ADivViNK~DL~~~~~ 106 (148)
+.+.++++.|....... .-..+|.+++|+|+....... .. ....++ -++|+||+|+.+...
T Consensus 58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl~~~~~ 135 (182)
T 1ky3_A 58 ATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP--FVILGNKIDAEESKK 135 (182)
T ss_dssp EEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC--EEEEEECTTSCGGGC
T ss_pred EEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc--EEEEEECCccccccc
Confidence 45677888885321111 113568899999987653210 00 012344 699999999964310
Q ss_pred -hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 107 -ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 107 -~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+...+..+ ..+..+++++||++|.|++++++++.-
T Consensus 136 ~v~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (182)
T 1ky3_A 136 IVSEKSAQELAK-SLGDIPLFLTSAKNAINVDTAFEEIAR 174 (182)
T ss_dssp CSCHHHHHHHHH-HTTSCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-hcCCCeEEEEecCCCCCHHHHHHHHHH
Confidence 11233444333 245678999999999999999998753
No 25
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.30 E-value=1.2e-06 Score=63.10 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=63.0
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc-------cc-C---CCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP-------RK-G---GPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~-------~~-~---~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.+++|.|....... .-..+|.+++|+|+....... .. . ....+ -++|+||+|+.++ ...
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~ 137 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT--LLIFANKQDLPGA--LSC 137 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE--EEEEEECTTSTTC--CCH
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc--EEEEEeCccCCCC--CCH
Confidence 44566667665311000 113578899999998764321 00 1 12344 6999999999887 555
Q ss_pred HHHHHHHHh---cCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALR---MRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~---~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+.+.+.+.. .....+++++||++|.|++++++++.-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 176 (186)
T 1ksh_A 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 176 (186)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHH
Confidence 556555431 134568999999999999999998753
No 26
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.29 E-value=1.2e-06 Score=64.27 Aligned_cols=98 Identities=11% Similarity=0.062 Sum_probs=60.1
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCccc-------c-C---CCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPR-------K-G---GPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~~-------~-~---~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.++++.|........ -..+|.+++|+|+.....+.. . . ....+ -++|+||+|+.+. ...
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p--iilv~NK~Dl~~~--~~~ 148 (192)
T 2b6h_A 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV--LLVFANKQDMPNA--MPV 148 (192)
T ss_dssp EEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE--EEEEEECTTSTTC--CCH
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe--EEEEEECCCCCCC--CCH
Confidence 455666666643211111 125788999999987643210 0 0 12344 6999999999876 544
Q ss_pred HHHHHHHHhc---CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~---np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+++.+.+... ....+++++||++|.|++++++++.-
T Consensus 149 ~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 187 (192)
T 2b6h_A 149 SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSH 187 (192)
T ss_dssp HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHH
Confidence 5555544321 23457999999999999999998764
No 27
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.28 E-value=7.2e-07 Score=70.96 Aligned_cols=96 Identities=10% Similarity=0.013 Sum_probs=65.6
Q ss_pred CCCEEEEecCCceeee-----ee------ccccCceEEEEEeCCCCCCcc-----c-cCC--CCcceeeEEEEecCCCCC
Q 032030 43 KADLLLCESGGDNLAA-----NF------SRELADYIIYIIDVSGGDKIP-----R-KGG--PGITQADLLVINKTDLAS 103 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~-----~~------~~~~~d~~i~vvDa~~~~~~~-----~-~~~--~qi~~ADivViNK~DL~~ 103 (148)
+..++|+.|.|...+. .+ .-..+|.+++|+|+.++.... . ... +..+ -++|+||+|+.+
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p--~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP--ILLVGNKLDAAK 131 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC--EEEEEECGGGCS
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC--EEEEEECcccCC
Confidence 4678899999975321 01 113679999999998763311 0 011 1344 699999999987
Q ss_pred chhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 104 AIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 104 ~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
. .. + +.+.++++.+..+++++||++|.|++++++++.
T Consensus 132 ~--~~-~-~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~ 168 (301)
T 1wf3_A 132 Y--PE-E-AMKAYHELLPEAEPRMLSALDERQVAELKADLL 168 (301)
T ss_dssp S--HH-H-HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHH
T ss_pred c--hH-H-HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHH
Confidence 6 54 0 334444445667899999999999999999875
No 28
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.28 E-value=1.3e-06 Score=61.40 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=63.9
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc-------c-C---CCCcceeeEEEEecCCCCCchhhh
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR-------K-G---GPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~-------~-~---~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
+..+.++++.|....... .-..+|.+++|+|+.....+.. . . ....+ -++|+||+|+.+. ..
T Consensus 43 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~ 118 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV--LLVFANKQDLPNA--MN 118 (164)
T ss_dssp SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE--EEEEEECTTSTTC--CC
T ss_pred CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe--EEEEEECcCCcCC--CC
Confidence 466777888885321111 1135788999999987532110 0 0 12334 6999999999876 44
Q ss_pred HHHHHHHHHhc---CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 109 LAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 109 l~~~~~~i~~~---np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+.+.+..... ....+++++||++|.|++++++++.-
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (164)
T 1r8s_A 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158 (164)
T ss_dssp HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHH
Confidence 45555444311 13457999999999999999998764
No 29
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.28 E-value=7.9e-07 Score=75.09 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=63.5
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHH-
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVME- 113 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~- 113 (148)
..+.++.|.|-... ... .-..+|..+.|+|+.++..-+. .....++. ++++||+|+.++ +.++.+.
T Consensus 73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~--IvviNK~Dl~~~--~~~~~~~~ 148 (482)
T 1wb1_A 73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI--IVVITKSDNAGT--EEIKRTEM 148 (482)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB--CEEEECTTSSCH--HHHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE--EEEEECCCcccc--hhHHHHHH
Confidence 34666677774311 000 1135799999999988643110 01124553 999999999986 5555444
Q ss_pred ---HHHHhc--CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 114 ---RDALRM--RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 114 ---~~i~~~--np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+.++.. .+..+++++||++|.|+++|++++.-
T Consensus 149 ~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~ 185 (482)
T 1wb1_A 149 IMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIIT 185 (482)
T ss_dssp HHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHH
Confidence 444332 23679999999999999999988753
No 30
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.28 E-value=6.7e-07 Score=63.15 Aligned_cols=97 Identities=18% Similarity=0.133 Sum_probs=60.7
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCccc---c-------CCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPR---K-------GGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~~---~-------~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|........ -..+|.+++|+|+........ . .....+ -++|+||+|+.++-....+
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~~~~~~~ 132 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC--LCIVGNKIDLEKERHVSIQ 132 (170)
T ss_dssp EEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE--EEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe--EEEEEECcccccccccCHH
Confidence 456777888853211111 135688999999876532110 0 011233 5899999999764112234
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+..+.. +.+++++||++|.|++++++++.
T Consensus 133 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1z08_A 133 EAESYAESV--GAKHYHTSAKQNKGIEELFLDLC 164 (170)
T ss_dssp HHHHHHHHT--TCEEEEEBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHH
Confidence 555656544 36899999999999999999875
No 31
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.27 E-value=1.9e-06 Score=61.46 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=59.8
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|....... .-..+|.+++|+|+....... ......++ -++|+||+|+.++-....+
T Consensus 60 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p--iilv~nK~Dl~~~~~~~~~ 137 (180)
T 2g6b_A 60 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA--LMLLGNKVDSAHERVVKRE 137 (180)
T ss_dssp EEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE--EEEEEECCSTTSCCCSCHH
T ss_pred EEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc--EEEEEECcccCcccccCHH
Confidence 35667777775321111 113568899999987653210 01112344 6899999999864111233
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+..+.. +.+++++||++|.|++++++++.
T Consensus 138 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 169 (180)
T 2g6b_A 138 DGEKLAKEY--GLPFMETSAKTGLNVDLAFTAIA 169 (180)
T ss_dssp HHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 444445443 35899999999999999999875
No 32
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.27 E-value=1.7e-06 Score=62.06 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=54.7
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|.-...... -..+|.+++|+|+.....+. ......++ -++|+||+|+.+.-....+
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p--iilv~nK~Dl~~~~~v~~~ 134 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE--KMILGNKCDVNDKRQVSKE 134 (183)
T ss_dssp EEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE--EEEEEEC--CCSCCCSCHH
T ss_pred EEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC--EEEEEECccCCccCcCCHH
Confidence 567788888853211111 13578899999987753211 00112344 5899999999764111234
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+.+..+..+ .+++++||++|.|++++++++.-
T Consensus 135 ~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~ 167 (183)
T 2fu5_C 135 RGEKLALDYG--IKFMETSAKANINVENAFFTLAR 167 (183)
T ss_dssp HHHHHHHHHT--CEEEECCC---CCHHHHHHHHHH
T ss_pred HHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHH
Confidence 5555555443 68999999999999999998764
No 33
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.26 E-value=6.4e-07 Score=66.44 Aligned_cols=96 Identities=10% Similarity=0.014 Sum_probs=59.2
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchhhhH-
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIGADL- 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~~~l- 109 (148)
+.+.++.|.|....... .-..+|.+++|+|+........ ......+ -++|+||+|+.+. .+.
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~~ 136 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAP--IVVCANKIDIKNR--QKIS 136 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSC--EEEEEECTTCC------CC
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC--EEEEEECCCCccc--cccC
Confidence 45777788875321111 1134788999999986532110 0111234 6899999999865 322
Q ss_pred -HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 -AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 -~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+...+..+ ..+.+++++||++|.|++++++++.-
T Consensus 137 ~~~~~~~~~--~~~~~~~~~Sa~~g~gv~~l~~~l~~ 171 (218)
T 4djt_A 137 KKLVMEVLK--GKNYEYFEISAKTAHNFGLPFLHLAR 171 (218)
T ss_dssp HHHHHHHTT--TCCCEEEEEBTTTTBTTTHHHHHHHH
T ss_pred HHHHHHHHH--HcCCcEEEEecCCCCCHHHHHHHHHH
Confidence 23333333 34578999999999999999998753
No 34
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.25 E-value=1.7e-06 Score=62.83 Aligned_cols=98 Identities=20% Similarity=0.107 Sum_probs=61.5
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc-------cc-C---CCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP-------RK-G---GPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~-------~~-~---~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.++++.|........ -..+|.+++|+|+.....+. .. . ...++ -++|+||+|+.+. .+.
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~NK~Dl~~~--~~~ 142 (188)
T 1zd9_A 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP--VLVLGNKRDLPGA--LDE 142 (188)
T ss_dssp EEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC--EEEEEECTTSTTC--CCH
T ss_pred EEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC--EEEEEECCCCccC--CCH
Confidence 345566666642110000 13578899999997653211 00 1 12344 6999999999876 444
Q ss_pred HHHHHHHHhc---CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~---np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+++.+.+... ....+++++||++|.|++++++++.-
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 181 (188)
T 1zd9_A 143 KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181 (188)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHH
Confidence 4554444321 23458899999999999999998864
No 35
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.24 E-value=2.4e-06 Score=68.55 Aligned_cols=78 Identities=14% Similarity=0.054 Sum_probs=54.9
Q ss_pred cCceEEEEEeCCCCCCccc-------c-C---CCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcC---CCCcEEEEE
Q 032030 64 LADYIIYIIDVSGGDKIPR-------K-G---GPGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQ 129 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~-------~-~---~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~n---p~a~vi~tS 129 (148)
.+|.+++|+|+.....+.. . . ...++ -++|+||+|+.+. ...+.+.+.+.... ...+++++|
T Consensus 232 ~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p--iilV~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~vS 307 (329)
T 3o47_A 232 NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV--LLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATC 307 (329)
T ss_dssp TEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE--EEEEEECTTSTTC--CCHHHHHHHHTCTTCCSSCEEEEECB
T ss_pred cCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe--EEEEEECccCCcc--cCHHHHHHHhchhhhhcCCCEEEEEE
Confidence 4688999999976543211 0 0 11333 5899999999887 55566666554322 345899999
Q ss_pred ecCCCCHHHHHHhhhh
Q 032030 130 VGWVIGIIFTLSITHY 145 (148)
Q Consensus 130 a~~g~gi~~l~~~~~~ 145 (148)
|++|.|++++++++.-
T Consensus 308 Ak~g~gi~el~~~l~~ 323 (329)
T 3o47_A 308 ATSGDGLYEGLDWLSN 323 (329)
T ss_dssp TTTTBTHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 9999999999998753
No 36
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.24 E-value=1.4e-06 Score=63.57 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=61.8
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
..+.++++.|....... .-..+|.+++|+|+....... ......++ -++|+||+|+.+.-....+
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~p--iiiv~NK~Dl~~~~~v~~~ 149 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV--MAIAGNKCDLSDIREVPLK 149 (192)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCE--EEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCc--EEEEEECcccccccccCHH
Confidence 34566677774211000 013468899999987764211 01112344 6899999999753112345
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+.+..++. +.+++++||++|.|++++++++.-
T Consensus 150 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 182 (192)
T 2fg5_A 150 DAKEYAESI--GAIVVETSAKNAINIEELFQGISR 182 (192)
T ss_dssp HHHHHHHTT--TCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEeCCCCcCHHHHHHHHHH
Confidence 566666643 378999999999999999998753
No 37
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.23 E-value=2.6e-06 Score=72.00 Aligned_cols=94 Identities=23% Similarity=0.109 Sum_probs=58.7
Q ss_pred CCCEEEEecCCceee----ee------e-ccccCceEEEEEeCCCCCCcc---------ccCCCCcceeeEEEEecCCCC
Q 032030 43 KADLLLCESGGDNLA----AN------F-SRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLA 102 (148)
Q Consensus 43 ~~D~IliEtsG~~~~----~~------~-~~~~~d~~i~vvDa~~~~~~~---------~~~~~qi~~ADivViNK~DL~ 102 (148)
+..+.++.|.|.... .. . .-..+|.+++|+|+..+.... .... ..+ .++|+||+|+.
T Consensus 280 g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~~p--iIvV~NK~Dl~ 356 (476)
T 3gee_A 280 KTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-AAK--FLTVANKLDRA 356 (476)
T ss_dssp TEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-TSE--EEEEEECTTSC
T ss_pred CeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-CCC--EEEEEECcCCC
Confidence 456889999997421 11 1 123579999999998775421 0111 233 79999999998
Q ss_pred CchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 103 SAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 103 ~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+. ...+. +.+.+. +..+++++||++|.|+++|++++.
T Consensus 357 ~~--~~~~~--~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~ 393 (476)
T 3gee_A 357 AN--ADALI--RAIADG-TGTEVIGISALNGDGIDTLKQHMG 393 (476)
T ss_dssp TT--THHHH--HHHHHH-HTSCEEECBTTTTBSHHHHHHHHT
T ss_pred Cc--cchhH--HHHHhc-CCCceEEEEECCCCCHHHHHHHHH
Confidence 87 54432 223332 126899999999999999999875
No 38
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.23 E-value=1.7e-06 Score=63.49 Aligned_cols=98 Identities=18% Similarity=0.120 Sum_probs=61.8
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|..-.... .-..+|.+++|+|+....... ......++ -++|+||+|+.+.-....+
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p--iilv~nK~Dl~~~~~~~~~ 134 (206)
T 2bcg_Y 57 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL--KLLVGNKCDLKDKRVVEYD 134 (206)
T ss_dssp EEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE--EEEEEECTTCTTTCCSCHH
T ss_pred EEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC--EEEEEECCCCccccccCHH
Confidence 45677777775311111 113568899999987653211 01122344 5899999999874112233
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+..+.. +.+++++||++|.|++++++++.-
T Consensus 135 ~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~ 167 (206)
T 2bcg_Y 135 VAKEFADAN--KMPFLETSALDSTNVEDAFLTMAR 167 (206)
T ss_dssp HHHHHHHHT--TCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 444555443 368999999999999999998753
No 39
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.23 E-value=9.2e-07 Score=73.83 Aligned_cols=79 Identities=16% Similarity=0.117 Sum_probs=56.0
Q ss_pred cCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcC---CCCcEEEEEecCCC
Q 032030 64 LADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVGWVI 134 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~n---p~a~vi~tSa~~g~ 134 (148)
.+|.+++|+|+.++..-+. ...... .-++|+||+|+.+.-....+++.+.+++.. +.++++++||++|.
T Consensus 277 ~ad~~llviD~~~~~~~~~~~~~~~~~~~~~--~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 354 (456)
T 4dcu_A 277 RSEVVAVVLDGEEGIIEQDKRIAGYAHEAGK--AVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKK 354 (456)
T ss_dssp HCSEEEEEEETTTCCCHHHHHHHHHHHHTTC--EEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred hCCEEEEEEeCCCCcCHHHHHHHHHHHHcCC--CEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCc
Confidence 4688899999987643111 011122 369999999998642234566666776554 36899999999999
Q ss_pred CHHHHHHhhh
Q 032030 135 GIIFTLSITH 144 (148)
Q Consensus 135 gi~~l~~~~~ 144 (148)
|++++++++.
T Consensus 355 gv~~l~~~i~ 364 (456)
T 4dcu_A 355 RIHTLMPAII 364 (456)
T ss_dssp TGGGHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999998875
No 40
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.23 E-value=2.1e-06 Score=62.09 Aligned_cols=97 Identities=20% Similarity=0.196 Sum_probs=59.8
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCc---c-------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKI---P-------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~---~-------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|....... .-..+|.+++|+|+...... . ......++ -++|+||+|+.+.-....+
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p--~ilv~nK~Dl~~~~~~~~~ 142 (196)
T 3tkl_A 65 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN--KLLVGNKCDLTTKKVVDYT 142 (196)
T ss_dssp EEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE--EEEEEECTTCTTTCCSCHH
T ss_pred EEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC--EEEEEECcccccccccCHH
Confidence 34556666664211100 01347889999998764321 0 01122344 5899999999865111223
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+..+..+ .+++++||++|.|++++|+++.
T Consensus 143 ~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 143 TAKEFADSLG--IPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp HHHHHHHHTT--CCEEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHcC--CcEEEEeCCCCCCHHHHHHHHH
Confidence 4445555433 6899999999999999998875
No 41
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.22 E-value=2.6e-06 Score=61.70 Aligned_cols=78 Identities=17% Similarity=0.062 Sum_probs=53.3
Q ss_pred cCceEEEEEeCCCCCCcc-------ccC----CCCcceeeEEEEecCCCCCchhhhHHHHHHHHHh---cCCCCcEEEEE
Q 032030 64 LADYIIYIIDVSGGDKIP-------RKG----GPGITQADLLVINKTDLASAIGADLAVMERDALR---MRDGGPFIFAQ 129 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~-------~~~----~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~---~np~a~vi~tS 129 (148)
.+|.+++|+|+....... ... ....+ -++|.||+|+.+. ...+.+.+.+.. .....+++++|
T Consensus 83 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (181)
T 1fzq_A 83 NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP--VLIFANKQDLLTA--APASEIAEGLNLHTIRDRVWQIQSCS 158 (181)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC--EEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC--EEEEEECcCcccC--CCHHHHHHHhCchhccCCceEEEEcc
Confidence 578899999987653211 011 12344 6899999999876 444455444321 12345799999
Q ss_pred ecCCCCHHHHHHhhhh
Q 032030 130 VGWVIGIIFTLSITHY 145 (148)
Q Consensus 130 a~~g~gi~~l~~~~~~ 145 (148)
|++|.|++++++++.-
T Consensus 159 a~~g~gi~~l~~~l~~ 174 (181)
T 1fzq_A 159 ALTGEGVQDGMNWVCK 174 (181)
T ss_dssp TTTCTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999998864
No 42
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.22 E-value=1.6e-06 Score=68.81 Aligned_cols=77 Identities=18% Similarity=0.126 Sum_probs=52.4
Q ss_pred cCceEEEEEeCCCCCC-cc---cc----CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 032030 64 LADYIIYIIDVSGGDK-IP---RK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIG 135 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~-~~---~~----~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~g 135 (148)
.+|.++.|+|+..... .. .. ....++ -++|+||+||.+. .+.++..+..+..+...+++++||++|.|
T Consensus 84 ~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~p--iilv~NK~DL~~~--~~v~~~~~~~~~~~~~~~~~~~SAktg~g 159 (301)
T 1u0l_A 84 NVDQVILVVTVKMPETSTYIIDKFLVLAEKNELE--TVMVINKMDLYDE--DDLRKVRELEEIYSGLYPIVKTSAKTGMG 159 (301)
T ss_dssp SCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCE--EEEEECCGGGCCH--HHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred cCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC--EEEEEeHHHcCCc--hhHHHHHHHHHHHhhhCcEEEEECCCCcC
Confidence 5788999999986541 11 11 112344 5899999999876 55444444444333227899999999999
Q ss_pred HHHHHHhhh
Q 032030 136 IIFTLSITH 144 (148)
Q Consensus 136 i~~l~~~~~ 144 (148)
+++++++..
T Consensus 160 v~~lf~~l~ 168 (301)
T 1u0l_A 160 IEELKEYLK 168 (301)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999998753
No 43
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.21 E-value=1.7e-06 Score=61.65 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=59.1
Q ss_pred CEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCc------cccCCCCcceeeEEEEecCCCCCchhhhHHHHHHH
Q 032030 45 DLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKI------PRKGGPGITQADLLVINKTDLASAIGADLAVMERD 115 (148)
Q Consensus 45 D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~------~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~ 115 (148)
.+.++.|.|....... .-..+|.+++|+|+..+... .......++ -++|+||+|+.+. . .+++.+.
T Consensus 56 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p--~ilv~nK~Dl~~~--~-~~~~~~~ 130 (178)
T 2lkc_A 56 KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP--IIVAINKMDKPEA--N-PDRVMQE 130 (178)
T ss_dssp EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC--EEEEEETTTSSCS--C-HHHHHHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC--EEEEEECccCCcC--C-HHHHHHH
Confidence 4556677774211111 11346888999998764221 011112344 6999999999864 2 2334444
Q ss_pred HHhcCC-------CCcEEEEEecCCCCHHHHHHhhhh
Q 032030 116 ALRMRD-------GGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 116 i~~~np-------~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+++... ..+++++||++|.|++++++++.-
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 167 (178)
T 2lkc_A 131 LMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILL 167 (178)
T ss_dssp HTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred HHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHH
Confidence 433221 258999999999999999998764
No 44
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.21 E-value=1.5e-06 Score=61.71 Aligned_cols=98 Identities=14% Similarity=0.072 Sum_probs=61.6
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|........ -..+|.+++|+|+....... .......+ -++|+||+|+.++-....+
T Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~~~~~~~ 141 (179)
T 1z0f_A 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV--IILIGNKADLEAQRDVTYE 141 (179)
T ss_dssp EEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE--EEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc--EEEEEECcccccccccCHH
Confidence 455666777742110000 12468899999987653211 01112334 6899999999754112234
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+.+..+.. +.+++++||++|.|++++++++.-
T Consensus 142 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (179)
T 1z0f_A 142 EAKQFAEEN--GLLFLEASAKTGENVEDAFLEAAK 174 (179)
T ss_dssp HHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 566666653 468999999999999999998753
No 45
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.21 E-value=2.3e-06 Score=62.02 Aligned_cols=98 Identities=15% Similarity=0.029 Sum_probs=60.6
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc---c-------cCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP---R-------KGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~---~-------~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
..+.++++.|....... .-..+|.+++|+|+....... . ......+ -++|+||+|+.+.-....+
T Consensus 71 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p--iilv~nK~Dl~~~~~~~~~ 148 (189)
T 2gf9_A 71 IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ--VILVGNKCDLEDERVVPAE 148 (189)
T ss_dssp EEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE--EEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC--EEEEEECcccccccCCCHH
Confidence 45566677774311111 113578899999987653210 0 0112344 5999999999764111223
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+..+..+ .+++++||++|.|++++++++.-
T Consensus 149 ~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~ 181 (189)
T 2gf9_A 149 DGRRLADDLG--FEFFEASAKENINVKQVFERLVD 181 (189)
T ss_dssp HHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHcC--CeEEEEECCCCCCHHHHHHHHHH
Confidence 4555555443 58999999999999999998753
No 46
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.21 E-value=1.6e-06 Score=69.00 Aligned_cols=75 Identities=15% Similarity=0.010 Sum_probs=53.3
Q ss_pred cCceEEEEEeCCCCC-Ccc---cc----CCCCcceeeEEEEecCCCCCchhhh---HHHHHHHHHhcCCCCcEEEEEecC
Q 032030 64 LADYIIYIIDVSGGD-KIP---RK----GGPGITQADLLVINKTDLASAIGAD---LAVMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~-~~~---~~----~~~qi~~ADivViNK~DL~~~~~~~---l~~~~~~i~~~np~a~vi~tSa~~ 132 (148)
.+|.++.|+|+.+.+ ... .. ....++ -++|+||+||.++ .+ .+...+.+++. +.+++++||++
T Consensus 79 naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~--~ilV~NK~DL~~~--~~v~~~~~~~~~~~~~--g~~~~~~SA~~ 152 (302)
T 2yv5_A 79 NVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVE--PVIVFNKIDLLNE--EEKKELERWISIYRDA--GYDVLKVSAKT 152 (302)
T ss_dssp SCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCE--EEEEECCGGGCCH--HHHHHHHHHHHHHHHT--TCEEEECCTTT
T ss_pred hcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCC--EEEEEEcccCCCc--cccHHHHHHHHHHHHC--CCeEEEEECCC
Confidence 568899999998754 211 10 112344 5999999999987 53 44555556554 35899999999
Q ss_pred CCCHHHHHHhhh
Q 032030 133 VIGIIFTLSITH 144 (148)
Q Consensus 133 g~gi~~l~~~~~ 144 (148)
|.|+++|++.+.
T Consensus 153 g~gi~~L~~~l~ 164 (302)
T 2yv5_A 153 GEGIDELVDYLE 164 (302)
T ss_dssp CTTHHHHHHHTT
T ss_pred CCCHHHHHhhcc
Confidence 999999998753
No 47
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.20 E-value=5.7e-07 Score=64.02 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=61.2
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc---------cCCCCcceeeEEEEecCCCCCchhhhHHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLAV 111 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~---------~~~~qi~~ADivViNK~DL~~~~~~~l~~ 111 (148)
+.+.++++.|....... .-..+|.+++|+|+........ ...+..+ -++|+||+|+.+.-....+.
T Consensus 58 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl~~~~~~~~~~ 135 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC--RILVGNKNDDPERKVVETED 135 (181)
T ss_dssp EEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSE--EEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--EEEEEECCCCchhcccCHHH
Confidence 45677777774321111 1135688999999876532110 0112233 58999999997641112234
Q ss_pred HHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 112 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 112 ~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
..+..+.. +.+++++||++|.|++++++++.-
T Consensus 136 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (181)
T 3tw8_B 136 AYKFAGQM--GIQLFETSAKENVNVEEMFNCITE 167 (181)
T ss_dssp HHHHHHHH--TCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHH
Confidence 44444443 358999999999999999998753
No 48
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.18 E-value=2.3e-06 Score=60.22 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=60.5
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
..+.+++|.|.-...... -..+|.+++|+|+....... ....+.++ -++|.||+|+.++-....+
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~--iilv~nK~Dl~~~~~v~~~ 132 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV--VAIAGNKCDLTDVREVMER 132 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSE--EEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc--EEEEEECCccccccccCHH
Confidence 456777888853211111 13568899999987653210 01123344 5788899999764111123
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+..+.. +.+++++||++|.|++++++++.
T Consensus 133 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~i~ 164 (170)
T 1z0j_A 133 DAKDYADSI--HAIFVETSAKNAININELFIEIS 164 (170)
T ss_dssp HHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEeCCCCcCHHHHHHHHH
Confidence 444444443 36899999999999999999875
No 49
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.17 E-value=2.1e-06 Score=61.22 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=61.2
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|.-..... .-..+|.+++|+|+.....+. ....+.++ -++|+||+|+.+.-....+
T Consensus 61 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--~i~v~nK~Dl~~~~~~~~~ 138 (181)
T 2efe_B 61 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV--MALAGNKSDLLDARKVTAE 138 (181)
T ss_dssp EEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE--EEEEEECTTCTTTCCSCHH
T ss_pred EEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc--EEEEEECCcccccccCCHH
Confidence 34566777774211111 013478899999987653210 11112344 5899999999764111234
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+.+..+.. +.+++++||++|.|++++++++.-
T Consensus 139 ~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~ 171 (181)
T 2efe_B 139 DAQTYAQEN--GLFFMETSAKTATNVKEIFYEIAR 171 (181)
T ss_dssp HHHHHHHHT--TCEEEECCSSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHH
Confidence 555555543 468999999999999999998753
No 50
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.16 E-value=2.3e-06 Score=70.29 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=63.8
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccc-c------C-CCCcceeeEEEEecCCCCCchhhhHHHH
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPR-K------G-GPGITQADLLVINKTDLASAIGADLAVM 112 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~-~------~-~~qi~~ADivViNK~DL~~~~~~~l~~~ 112 (148)
..+.++.|.|-... ... .-..+|..++|+|+.++...+. . . ....+ -++|+||+|+.++ .+.+..
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~--iivviNK~Dl~~~--~~~~~~ 150 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKN--LIIVQNKVDVVSK--EEALSQ 150 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCC--EEEEEECGGGSCH--HHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCC--EEEEEECccccch--HHHHHH
Confidence 46788899985321 000 1135799999999988742211 0 0 00112 4889999999987 655443
Q ss_pred HHHH----HhcC-CCCcEEEEEecCCCCHHHHHHhhh
Q 032030 113 ERDA----LRMR-DGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 113 ~~~i----~~~n-p~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+.+ +..+ ...+++++||++|.|+++|++++.
T Consensus 151 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~ 187 (403)
T 3sjy_A 151 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIE 187 (403)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHH
Confidence 3333 3323 367999999999999999999875
No 51
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.14 E-value=1.6e-06 Score=61.57 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=59.6
Q ss_pred CEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc---cc-------CCCCcceeeEEEEecCCCCCchhhhHHH
Q 032030 45 DLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP---RK-------GGPGITQADLLVINKTDLASAIGADLAV 111 (148)
Q Consensus 45 D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~---~~-------~~~qi~~ADivViNK~DL~~~~~~~l~~ 111 (148)
.+.++++.|........ -..+|.+++|+|+....... .. ....++ -++|+||+|+.++-....+.
T Consensus 64 ~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p--iilv~nK~Dl~~~~~~~~~~ 141 (179)
T 2y8e_A 64 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI--IMLVGNKTDLSDKRQVSTEE 141 (179)
T ss_dssp EEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE--EEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc--EEEEEECCcccccCcCCHHH
Confidence 45677777743211110 12568899999987642210 00 112333 58999999997541112334
Q ss_pred HHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 112 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 112 ~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..+..+..+ .+++++||++|.|++++++++.
T Consensus 142 ~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 142 GERKAKELN--VMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp HHHHHHHHT--CEEEEEBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 455555443 6899999999999999999875
No 52
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.14 E-value=7e-06 Score=65.05 Aligned_cols=98 Identities=11% Similarity=0.008 Sum_probs=64.5
Q ss_pred CCCEEEEecCCce-eee-----ee------ccccCceEEEEEeCCCCCCccc-----cCCCCcceeeEEEEecCCCCC-c
Q 032030 43 KADLLLCESGGDN-LAA-----NF------SRELADYIIYIIDVSGGDKIPR-----KGGPGITQADLLVINKTDLAS-A 104 (148)
Q Consensus 43 ~~D~IliEtsG~~-~~~-----~~------~~~~~d~~i~vvDa~~~~~~~~-----~~~~qi~~ADivViNK~DL~~-~ 104 (148)
+..+.++.|.|.. .+. .+ .-..+|.+++|+|+........ ......| .++++||+|+.+ .
T Consensus 55 ~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P--~ilvlNK~D~~~~~ 132 (301)
T 1ega_A 55 AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAP--VILAVNKVDNVQEK 132 (301)
T ss_dssp TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSC--EEEEEESTTTCCCH
T ss_pred CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCC--EEEEEECcccCccH
Confidence 4567889999975 110 01 0135688899999866221110 1112344 799999999987 4
Q ss_pred hhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 105 IGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 105 ~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..+....+.+.+..+..+++++||++|.|++++++++.
T Consensus 133 --~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 133 --ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp --HHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 44544445555544556899999999999999999875
No 53
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.14 E-value=3.7e-06 Score=70.44 Aligned_cols=78 Identities=15% Similarity=0.028 Sum_probs=54.3
Q ss_pred cCceEEEEEeCCCCCCccc-------cC----CCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhc---CCCCcEEEEE
Q 032030 64 LADYIIYIIDVSGGDKIPR-------KG----GPGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQ 129 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~-------~~----~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~---np~a~vi~tS 129 (148)
.+|.+++|+|+.....+.. .. ...++ -++|+||+||.+. ...+.+.+.+... ....+++++|
T Consensus 389 ~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p--~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 464 (497)
T 3lvq_E 389 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI--ILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSC 464 (497)
T ss_dssp TCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE--EEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECB
T ss_pred cCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc--EEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEE
Confidence 4788999999987643210 00 12344 5899999999876 5555555554321 2345799999
Q ss_pred ecCCCCHHHHHHhhhh
Q 032030 130 VGWVIGIIFTLSITHY 145 (148)
Q Consensus 130 a~~g~gi~~l~~~~~~ 145 (148)
|++|.|++++++++.-
T Consensus 465 A~~g~gi~~l~~~l~~ 480 (497)
T 3lvq_E 465 ATSGDGLYEGLTWLTS 480 (497)
T ss_dssp TTTTBTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999998753
No 54
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.13 E-value=4.3e-06 Score=62.81 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=62.5
Q ss_pred CCEEEEecCCceee----------eee--ccccCceEEEEEeCCCCCCcc--------c-cCC--CCcceeeEEEEecCC
Q 032030 44 ADLLLCESGGDNLA----------ANF--SRELADYIIYIIDVSGGDKIP--------R-KGG--PGITQADLLVINKTD 100 (148)
Q Consensus 44 ~D~IliEtsG~~~~----------~~~--~~~~~d~~i~vvDa~~~~~~~--------~-~~~--~qi~~ADivViNK~D 100 (148)
..+.++.|.|.... ..+ ....+|.+++|+|+....... . ... +..+ -++|+||+|
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p--iilv~nK~D 153 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS--IVIGFNKID 153 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC--EEEEEECGG
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc--EEEEEeCcc
Confidence 46788889887210 001 123568899999998753321 0 011 1344 699999999
Q ss_pred CCCchhhhH-----HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 101 LASAIGADL-----AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 101 L~~~~~~~l-----~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+.+. .++ +.+.+..+..++..+++++||++|.|++++++++.-
T Consensus 154 l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (228)
T 2qu8_A 154 KCNM--DSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACE 201 (228)
T ss_dssp GCC----CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred cCCc--hhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHH
Confidence 9865 322 234444444444579999999999999999998763
No 55
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.12 E-value=1.8e-06 Score=60.67 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=60.5
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|....... .-..+|.+++|+|+....... ....+.++ -++|.||+|+.++-....+
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~--iilv~nK~Dl~~~~~~~~~ 132 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV--IALSGNKADLANKRAVDFQ 132 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE--EEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc--EEEEEECccCccccccCHH
Confidence 45666777774211111 013578899999987653210 01122344 5778899999754112234
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+..+. ...+++++||++|.|++++++++.-
T Consensus 133 ~~~~~~~~--~~~~~~~~Sa~~g~gi~~l~~~i~~ 165 (170)
T 1r2q_A 133 EAQSYADD--NSLLFMETSAKTSMNVNEIFMAIAK 165 (170)
T ss_dssp HHHHHHHH--TTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHH--cCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 45555554 3468999999999999999998753
No 56
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.10 E-value=8.8e-06 Score=60.12 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=52.5
Q ss_pred cCceEEEEEeCCCCCCcc-------ccCC----CCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecC
Q 032030 64 LADYIIYIIDVSGGDKIP-------RKGG----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~-------~~~~----~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~ 132 (148)
.+|.+++|+|+....... .... ...+ -++|+||+|+.+.-....+.+.+..+.. +.+++++||++
T Consensus 107 ~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~p--iilV~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 182 (217)
T 2f7s_A 107 DAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD--IVLIGNKADLPDQREVNERQARELADKY--GIPYFETSAAT 182 (217)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE--EEEEEECTTCGGGCCSCHHHHHHHHHHT--TCCEEEEBTTT
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCC--EEEEEECCccccccccCHHHHHHHHHHC--CCcEEEEECCC
Confidence 578899999987653210 0110 2344 6899999999764111234555555543 36899999999
Q ss_pred CCCHHHHHHhhhh
Q 032030 133 VIGIIFTLSITHY 145 (148)
Q Consensus 133 g~gi~~l~~~~~~ 145 (148)
|.|++++++++.-
T Consensus 183 g~gi~~l~~~l~~ 195 (217)
T 2f7s_A 183 GQNVEKAVETLLD 195 (217)
T ss_dssp TBTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998753
No 57
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.10 E-value=1.1e-05 Score=58.19 Aligned_cols=97 Identities=21% Similarity=0.136 Sum_probs=60.2
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc-------ccc--C--CCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI-------PRK--G--GPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~-------~~~--~--~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+.++++.|........ -..+|.+++|+|+...... ... . ...++ -++|+||+|+.+. ....
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--~ilv~nK~Dl~~~-~~~~ 140 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV--NMLVGNKIDKENR-EVDR 140 (195)
T ss_dssp EEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCE--EEEEEECTTSSSC-CSCH
T ss_pred EEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCc--EEEEEECCcCccc-ccCH
Confidence 446666777743111110 1357889999998765321 000 1 12333 5899999999653 0122
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+...+..+.. +.+++++||++|.|++++++++.-
T Consensus 141 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (195)
T 1x3s_A 141 NEGLKFARKH--SMLFIEASAKTCDGVQCAFEELVE 174 (195)
T ss_dssp HHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCEEEEecCCCCCCHHHHHHHHHH
Confidence 3455555543 468999999999999999998753
No 58
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.08 E-value=8.5e-06 Score=58.80 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=60.2
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------cc-CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RK-GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~-~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+++.++++.|....... .-..+|.+++|+|+....... .. ....++ -++|+||+|+.+. ....
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--~ilv~nK~Dl~~~-~~~~ 145 (190)
T 3con_A 69 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP--MVLVGNKCDLPTR-TVDT 145 (190)
T ss_dssp EEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC--EEEEEECTTCSCC-CSCH
T ss_pred EEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe--EEEEEECCcCCcc-cCCH
Confidence 55778888885421111 113578889999987653210 00 012344 5899999999763 0223
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+.+.+..++.+ .+++++||++|.|++++++++.-
T Consensus 146 ~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 179 (190)
T 3con_A 146 KQAHELAKSYG--IPFIETSAKTRQGVEDAFYTLVR 179 (190)
T ss_dssp HHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHH
Confidence 44555555443 58999999999999999998753
No 59
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.07 E-value=3.7e-06 Score=60.99 Aligned_cols=78 Identities=17% Similarity=0.064 Sum_probs=52.3
Q ss_pred cCceEEEEEeCCCCCCc---c-------ccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKI---P-------RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~---~-------~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
.+|.+++|+|+...... . .......+ -++|+||+|+.+.-....+...+..+. .+.+++++||++|
T Consensus 97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~p--iilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~ 172 (193)
T 2oil_A 97 GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIV--VMLVGNKSDLSQAREVPTEEARMFAEN--NGLLFLETSALDS 172 (193)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCE--EEEEEECGGGGGGCCSCHHHHHHHHHH--TTCEEEEECTTTC
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe--EEEEEECCCcccccccCHHHHHHHHHH--cCCEEEEEeCCCC
Confidence 46888999998765321 0 01112334 689999999976411223445555553 3468999999999
Q ss_pred CCHHHHHHhhhh
Q 032030 134 IGIIFTLSITHY 145 (148)
Q Consensus 134 ~gi~~l~~~~~~ 145 (148)
.|++++++++.-
T Consensus 173 ~gi~~l~~~l~~ 184 (193)
T 2oil_A 173 TNVELAFETVLK 184 (193)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999998753
No 60
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.06 E-value=2.9e-06 Score=60.88 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=61.2
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc----------cCC-CCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR----------KGG-PGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~----------~~~-~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+.++++.|....... .-..+|.+++|+|+........ ... ..++ -++|+||+|+.+.-....
T Consensus 70 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--iilv~nK~Dl~~~~~~~~ 147 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD--IVLCGNKSDLEDQRAVKE 147 (195)
T ss_dssp EEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC--EEEEEECTTCGGGCCSCH
T ss_pred EEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECcccccccccCH
Confidence 35666777775321000 1135788999999876532110 000 2344 699999999976311223
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+.+.+..+..+ .+++++||++|.|++++++++.-
T Consensus 148 ~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~ 181 (195)
T 3bc1_A 148 EEARELAEKYG--IPYFETSAANGTNISHAIEMLLD 181 (195)
T ss_dssp HHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCEEEEECCCCCCHHHHHHHHHH
Confidence 44555555443 58999999999999999998753
No 61
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.06 E-value=4.9e-06 Score=60.45 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=59.6
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|....... .-..+|.+++|+|+........ ......+ -++|+||+|+.+.-....+
T Consensus 70 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p--iilv~nK~Dl~~~~~v~~~ 147 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV--IMLIGNKSDLESRRDVKRE 147 (191)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE--EEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC--EEEEEECcccCCccccCHH
Confidence 45566677764211111 1135788999999876532110 0112334 5899999999753011233
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+..++. +.+++++||++|.|++++++++.
T Consensus 148 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 179 (191)
T 2a5j_A 148 EGEAFAREH--GLIFMETSAKTACNVEEAFINTA 179 (191)
T ss_dssp HHHHHHHHH--TCEEEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHH
Confidence 455555543 35899999999999999998875
No 62
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.06 E-value=2.7e-06 Score=62.12 Aligned_cols=98 Identities=17% Similarity=0.082 Sum_probs=60.5
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|........ -..+|.+++|+|+....... ......++ -++|+||+|+.+.-....+
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p--iilV~NK~Dl~~~~~v~~~ 152 (192)
T 2il1_A 75 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE--LLLVGNKLDCETDREITRQ 152 (192)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE--EEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc--EEEEEECcccccccccCHH
Confidence 456666777742110000 12468899999987653211 01122344 6999999999754111223
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..++..+. ....+++++||++|.|++++++++.
T Consensus 153 ~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~~l~ 185 (192)
T 2il1_A 153 QGEKFAQQ-ITGMRFCEASAKDNFNVDEIFLKLV 185 (192)
T ss_dssp HHHHHHHT-STTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHh-cCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 44444443 2457899999999999999999875
No 63
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.05 E-value=2e-06 Score=60.55 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=56.5
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc-------c--cC--CCCcceeeEEEEecCCCCCchhhh
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP-------R--KG--GPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~-------~--~~--~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
.+.+.+.++.|..-..... -..+|.++.++|......+. . .. ...++ -++|+||+|+.+.-...
T Consensus 48 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl~~~~~~~ 125 (166)
T 3q72_A 48 EASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP--IILVGNKSDLVRSREVS 125 (166)
T ss_dssp EEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC--EEEEEECTTCCSSCCSC
T ss_pred EEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEeccccccccccC
Confidence 3455667777753211111 13568889999987543210 0 01 12344 58999999998651122
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 109 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 109 l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+...+..+.. +.+++++||++|.|++++++++.
T Consensus 126 ~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 126 VDEGRACAVVF--DCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp HHHHHHHHHHT--TCEEEECBGGGTBSHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHH
Confidence 23344444433 36999999999999999999875
No 64
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.05 E-value=5.7e-06 Score=58.14 Aligned_cols=97 Identities=18% Similarity=0.104 Sum_probs=60.2
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCc---c-------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKI---P-------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~---~-------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|....... .-..+|.+++|+|+...... . .......+ -++|+||+|+.+.. ...+
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p--iilv~nK~Dl~~~~-~~~~ 128 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ--LLLVGNKSDMETRV-VTAD 128 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE--EEEEEECTTCTTCC-SCHH
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc--EEEEEECccCCcCc-cCHH
Confidence 45677777774321111 11346888999998765321 0 01122344 58999999995430 1223
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+..++.+ .+++++||++|.|++++++++.-
T Consensus 129 ~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 129 QGEALAKELG--IPFIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp HHHHHHHHHT--CCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHcC--CeEEEEECCCCCCHHHHHHHHHH
Confidence 4444444433 58999999999999999998753
No 65
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.03 E-value=1e-06 Score=64.75 Aligned_cols=97 Identities=13% Similarity=0.037 Sum_probs=59.6
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc-------c--c--CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP-------R--K--GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~-------~--~--~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+.+++|.|.-....+ .-..+|.+++|+|+....... . . ....++ -++|+||+|+.+.-....
T Consensus 72 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--iilv~nK~Dl~~~~~v~~ 149 (201)
T 3oes_A 72 FHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP--VVLVGNKADLSPEREVQA 149 (201)
T ss_dssp EEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC--EEEEEECTTCGGGCCSCH
T ss_pred EEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECccCccccccCH
Confidence 44567777774321111 113478899999987643210 0 0 012344 689999999975411122
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+...+..+..+ .+++++||++|.|++++|+++.
T Consensus 150 ~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~ 182 (201)
T 3oes_A 150 VEGKKLAESWG--ATFMESSARENQLTQGIFTKVI 182 (201)
T ss_dssp HHHHHHHHHHT--CEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 34444444433 5899999999999999998875
No 66
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.03 E-value=1.8e-06 Score=61.98 Aligned_cols=97 Identities=13% Similarity=0.051 Sum_probs=60.7
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|....... .-..+|.+++|+|+....... ......++ -++|+||+|+.++-....+
T Consensus 59 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~~~~~~~ 136 (186)
T 2bme_A 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV--IILCGNKKDLDADREVTFL 136 (186)
T ss_dssp EEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE--EEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc--EEEEEECcccccccccCHH
Confidence 45566777774321100 113578899999987653210 01123344 6999999999653112223
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+..+. .+.+++++||++|.|++++++++.
T Consensus 137 ~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 168 (186)
T 2bme_A 137 EASRFAQE--NELMFLETSALTGENVEEAFVQCA 168 (186)
T ss_dssp HHHHHHHH--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHH--cCCEEEEecCCCCCCHHHHHHHHH
Confidence 45555553 347899999999999999999875
No 67
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.03 E-value=1e-05 Score=63.75 Aligned_cols=75 Identities=15% Similarity=0.014 Sum_probs=54.2
Q ss_pred cCceEEEEEeCCCCCCcc--c--cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 64 LADYIIYIIDVSGGDKIP--R--KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~--~--~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
.+|.++.|+|+..+.... . .+-...+ -++|+||+||++. +..+...+++++. +.+++++||++|.|++++
T Consensus 23 ~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp--~ilVlNK~DL~~~--~~~~~~~~~~~~~--g~~~i~iSA~~~~gi~~L 96 (282)
T 1puj_A 23 LIDIVYELVDARIPMSSRNPMIEDILKNKP--RIMLLNKADKADA--AVTQQWKEHFENQ--GIRSLSINSVNGQGLNQI 96 (282)
T ss_dssp GCSEEEEEEETTSTTTTSCHHHHHHCSSSC--EEEEEECGGGSCH--HHHHHHHHHHHTT--TCCEEECCTTTCTTGGGH
T ss_pred hCCEEEEEEeCCCCCccCCHHHHHHHCCCC--EEEEEECcccCCH--HHHHHHHHHHHhc--CCcEEEEECCCcccHHHH
Confidence 578899999998764321 1 1112334 6999999999987 6666666666532 358999999999999998
Q ss_pred HHhhh
Q 032030 140 LSITH 144 (148)
Q Consensus 140 ~~~~~ 144 (148)
++.+.
T Consensus 97 ~~~i~ 101 (282)
T 1puj_A 97 VPASK 101 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87553
No 68
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.02 E-value=5.2e-06 Score=60.68 Aligned_cols=98 Identities=16% Similarity=0.016 Sum_probs=60.6
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|..-.... .-..+|.+++|+|+....... .......+ -++|+||+|+.+.-....+
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p--iilv~nK~Dl~~~~~~~~~ 134 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ--VLLVGNKCDMEDERVVSSE 134 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE--EEEEEECTTCTTSCCSCHH
T ss_pred EEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC--EEEEEECcccCcccccCHH
Confidence 44566666664311000 013478899999987653210 00112344 5899999999764112234
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+..+..+ .+++++||++|.|++++++++.-
T Consensus 135 ~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 167 (203)
T 1zbd_A 135 RGRQLADHLG--FEFFEASAKDNINVKQTFERLVD 167 (203)
T ss_dssp HHHHHHHHHT--CEEEECBTTTTBSSHHHHHHHHH
T ss_pred HHHHHHHHCC--CeEEEEECCCCCCHHHHHHHHHH
Confidence 4555555443 58999999999999999998753
No 69
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.02 E-value=2e-05 Score=61.51 Aligned_cols=75 Identities=9% Similarity=0.038 Sum_probs=53.5
Q ss_pred cCceEEEEEeCCCCCCccc-cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHh
Q 032030 64 LADYIIYIIDVSGGDKIPR-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 142 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~-~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~ 142 (148)
.+|.++.|+|+..+..... ... -+..--++|+||+||++. ...+...+++++. +.++ .+||++|.|+++|++.
T Consensus 21 ~~D~vl~VvDar~P~~~~~~~l~-ll~k~~iivlNK~DL~~~--~~~~~~~~~~~~~--g~~v-~iSa~~~~gi~~L~~~ 94 (262)
T 3cnl_A 21 LVNTVVEVRDARAPFATSAYGVD-FSRKETIILLNKVDIADE--KTTKKWVEFFKKQ--GKRV-ITTHKGEPRKVLLKKL 94 (262)
T ss_dssp TCSEEEEEEETTSTTTTSCTTSC-CTTSEEEEEEECGGGSCH--HHHHHHHHHHHHT--TCCE-EECCTTSCHHHHHHHH
T ss_pred hCCEEEEEeeCCCCCcCcChHHH-hcCCCcEEEEECccCCCH--HHHHHHHHHHHHc--CCeE-EEECCCCcCHHHHHHH
Confidence 5789999999976543211 001 112236999999999987 7666666666643 3567 9999999999999987
Q ss_pred hh
Q 032030 143 TH 144 (148)
Q Consensus 143 ~~ 144 (148)
+.
T Consensus 95 l~ 96 (262)
T 3cnl_A 95 SF 96 (262)
T ss_dssp CC
T ss_pred HH
Confidence 64
No 70
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.01 E-value=5.6e-06 Score=60.83 Aligned_cols=98 Identities=14% Similarity=0.073 Sum_probs=60.6
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|....... .-..+|.+++|+|+........ .....++ -++|+||+|+.+.-....+
T Consensus 74 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~~~v~~~ 151 (200)
T 2o52_A 74 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV--VILCGNKKDLDPEREVTFL 151 (200)
T ss_dssp EEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE--EEEEEECGGGGGGCCSCHH
T ss_pred eEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc--EEEEEECCCcccccccCHH
Confidence 45666677774211111 0135788999999876532110 0122344 5899999999754111223
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+..+. .+.+++++||++|.|++++++++.-
T Consensus 152 ~~~~~~~~--~~~~~~~~SA~~g~gi~~l~~~l~~ 184 (200)
T 2o52_A 152 EASRFAQE--NELMFLETSALTGENVEEAFLKCAR 184 (200)
T ss_dssp HHHHHHHH--TTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHH--cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 45555554 3468999999999999999998753
No 71
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.01 E-value=1.2e-05 Score=68.03 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=62.5
Q ss_pred CCEEEEecCCce-eee----ee-------ccccCceEEEEEeCCCCCCccc--c--CCCCcceeeEEEEecCCCCCchhh
Q 032030 44 ADLLLCESGGDN-LAA----NF-------SRELADYIIYIIDVSGGDKIPR--K--GGPGITQADLLVINKTDLASAIGA 107 (148)
Q Consensus 44 ~D~IliEtsG~~-~~~----~~-------~~~~~d~~i~vvDa~~~~~~~~--~--~~~qi~~ADivViNK~DL~~~~~~ 107 (148)
..+.++.|.|.- ... .+ .-..+|.+++|+|+........ . .....+ -++|+||+|+.+. .
T Consensus 291 ~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~p--iivV~NK~DL~~~--~ 366 (482)
T 1xzp_A 291 ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKR--YLVVINKVDVVEK--I 366 (482)
T ss_dssp EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSS--EEEEEEECSSCCC--C
T ss_pred eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCC--EEEEEECcccccc--c
Confidence 457888898875 221 00 0125789999999877643211 0 001233 6999999999865 3
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 108 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 108 ~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
..+.+.+.. ....+++++||++|.|+++|++++.-
T Consensus 367 ~~~~~~~~~---~~~~~~i~iSAktg~Gi~eL~~~l~~ 401 (482)
T 1xzp_A 367 NEEEIKNKL---GTDRHMVKISALKGEGLEKLEESIYR 401 (482)
T ss_dssp CHHHHHHHH---TCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred CHHHHHHHh---cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 444444433 23468999999999999999988753
No 72
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.01 E-value=1.5e-05 Score=65.49 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=62.3
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCC-Ccccc--C--CCCcce-eeEEEEecCCCCCchhhhH----H
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGD-KIPRK--G--GPGITQ-ADLLVINKTDLASAIGADL----A 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~-~~~~~--~--~~qi~~-ADivViNK~DL~~~~~~~l----~ 110 (148)
..+.|+.|.|-... ..+ .-..+|..+.|+|+.++. ..+.. . -..+.. --++++||+|+.++ .+. +
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~--~~~~~~~~ 160 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK--EKALENYR 160 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH--HHHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH--HHHHHHHH
Confidence 45778888885321 111 113569999999998764 21100 0 000111 13688999999986 543 3
Q ss_pred HHHHHHHhc-CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 111 VMERDALRM-RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 111 ~~~~~i~~~-np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
++.+.+++. ....+++++||++|.|+++|++++.
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 195 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIE 195 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 444545432 2467999999999999999999875
No 73
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.00 E-value=5.8e-06 Score=60.05 Aligned_cols=78 Identities=17% Similarity=0.015 Sum_probs=51.3
Q ss_pred cCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
.+|.+++|+|+.....+. ......++ -++|+||+|+.+.-....+...+..+.. +.+++++||++|
T Consensus 95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p--iilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~ 170 (191)
T 3dz8_A 95 GAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ--VILVGNKCDMEEERVVPTEKGQLLAEQL--GFDFFEASAKEN 170 (191)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE--EEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEECBTTTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC--EEEEEECCCCccccccCHHHHHHHHHHc--CCeEEEEECCCC
Confidence 568899999987642210 01112444 5899999999654112223444444443 358999999999
Q ss_pred CCHHHHHHhhhh
Q 032030 134 IGIIFTLSITHY 145 (148)
Q Consensus 134 ~gi~~l~~~~~~ 145 (148)
.|++++++++.-
T Consensus 171 ~gi~~l~~~l~~ 182 (191)
T 3dz8_A 171 ISVRQAFERLVD 182 (191)
T ss_dssp BSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999998753
No 74
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.00 E-value=2.1e-06 Score=72.32 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=58.2
Q ss_pred CCCEEEEecCCceee----ee------e-ccccCceEEEEEeCCCCCCcc-----ccCCCCcceeeEEEEecCCCCCchh
Q 032030 43 KADLLLCESGGDNLA----AN------F-SRELADYIIYIIDVSGGDKIP-----RKGGPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~----~~------~-~~~~~d~~i~vvDa~~~~~~~-----~~~~~qi~~ADivViNK~DL~~~~~ 106 (148)
+..+.++.|.|.-.. .. . .-..+|.+++|+|+..+.... .... ..+ .++|+||+|+.+.
T Consensus 271 g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~-~~p--iivV~NK~Dl~~~-- 345 (462)
T 3geh_A 271 GIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK-HRP--LILVMNKIDLVEK-- 345 (462)
T ss_dssp TEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT-TSC--EEEEEECTTSSCG--
T ss_pred CEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc-CCc--EEEEEECCCCCcc--
Confidence 456789999996321 11 1 113579999999998764321 1011 123 7999999999887
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+ .++++....+++++||++|.|+++|++++.
T Consensus 346 ~~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~ 379 (462)
T 3geh_A 346 QLIT----SLEYPENITQIVHTAAAQKQGIDSLETAIL 379 (462)
T ss_dssp GGST----TCCCCTTCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred hhhH----HHHHhccCCcEEEEECCCCCCHHHHHHHHH
Confidence 5433 233333567899999999999999998875
No 75
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.00 E-value=4.4e-06 Score=58.56 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=61.3
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc---c-------c-cCCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI---P-------R-KGGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~---~-------~-~~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+.++++.|........ -..+|.+++++|+...... . . ......+ -++|+||+|+.++-....
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--iilv~nK~Dl~~~~~~~~ 128 (167)
T 1c1y_A 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP--MILVGNKCDLEDERVVGK 128 (167)
T ss_dssp EEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC--EEEEEECTTCGGGCCSCH
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc--EEEEEECccccccccCCH
Confidence 346677787753211111 1246888999998764211 0 0 0122344 589999999976411123
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+...+..+. .+..+++++||++|.|++++++++.
T Consensus 129 ~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (167)
T 1c1y_A 129 EQGQNLARQ-WCNCAFLESSAKSKINVNEIFYDLV 162 (167)
T ss_dssp HHHHHHHHH-TTSCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHH-ccCCcEEEecCCCCCCHHHHHHHHH
Confidence 445554443 3467899999999999999999875
No 76
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.99 E-value=6.7e-06 Score=58.16 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=57.6
Q ss_pred CCEEEEecCCceee--eeec---cccCceEEEEEeCCCCCCcc---------ccC--CCCcceeeEEEEecCCCCCchhh
Q 032030 44 ADLLLCESGGDNLA--ANFS---RELADYIIYIIDVSGGDKIP---------RKG--GPGITQADLLVINKTDLASAIGA 107 (148)
Q Consensus 44 ~D~IliEtsG~~~~--~~~~---~~~~d~~i~vvDa~~~~~~~---------~~~--~~qi~~ADivViNK~DL~~~~~~ 107 (148)
+.+.++++.|.... ..+. -..+|.+++|+|+.....+. ... ...++ -++|+||+|+.+.-..
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p--iilv~NK~Dl~~~~~v 129 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP--IILVGNKADLARCREV 129 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC--EEEEEECTTCTTTCCS
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC--EEEEEEChhhcccccc
Confidence 45677788876431 1111 13468889999987642210 001 12344 5999999999764111
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 108 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 108 ~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
..+...+..+..+ .+++++||++|.|++++++++.-
T Consensus 130 ~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~ 165 (175)
T 2nzj_A 130 SVEEGRACAVVFD--CKFIETSATLQHNVAELFEGVVR 165 (175)
T ss_dssp CHHHHHHHHHHHT--SEEEECBTTTTBSHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHHHHHH
Confidence 2233444444333 68999999999999999998753
No 77
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.99 E-value=5.2e-06 Score=68.87 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=53.5
Q ss_pred cCceEEEEEeCCCCCCcccc--CC--CCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcC---CCCcEEEEEecCCCCH
Q 032030 64 LADYIIYIIDVSGGDKIPRK--GG--PGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVGWVIGI 136 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~~--~~--~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~n---p~a~vi~tSa~~g~gi 136 (148)
.+|.++.|+|+.++...+.. .. ......-++|+||+|+.+.-....+++.+.+++.. +.+|++++||++|.|+
T Consensus 257 ~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v 336 (436)
T 2hjg_A 257 RSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRI 336 (436)
T ss_dssp HCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTG
T ss_pred hCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCH
Confidence 35788999999887542110 00 00123479999999998751112344555554332 5789999999999999
Q ss_pred HHHHHhhh
Q 032030 137 IFTLSITH 144 (148)
Q Consensus 137 ~~l~~~~~ 144 (148)
+++++.+.
T Consensus 337 ~~l~~~i~ 344 (436)
T 2hjg_A 337 HTLMPAII 344 (436)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 78
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.98 E-value=2.8e-06 Score=62.70 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=60.2
Q ss_pred CCCEEEEecCCceeeee-ec---cccCceEEEEEeCCCCCC----ccc----------cCCCCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNLAAN-FS---RELADYIIYIIDVSGGDK----IPR----------KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~-~~---~~~~d~~i~vvDa~~~~~----~~~----------~~~~qi~~ADivViNK~DL~~~ 104 (148)
+..+.++.|.|...... +. -..+|.+++|+|+..... ... ......+ -++|+||+|+.+.
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~ 130 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS--LLIACNKQDIAMA 130 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCE--EEEEEECTTSTTC
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCC--EEEEEECCCCCCc
Confidence 35577788888532111 11 135688899999876321 000 0122344 6999999999876
Q ss_pred hhhhHHHHHHHHHh------------------------cCC-------------CCcEEEEEecCC------CCHHHHHH
Q 032030 105 IGADLAVMERDALR------------------------MRD-------------GGPFIFAQVGWV------IGIIFTLS 141 (148)
Q Consensus 105 ~~~~l~~~~~~i~~------------------------~np-------------~a~vi~tSa~~g------~gi~~l~~ 141 (148)
...+.+.+.+++ ... ..+++++||++| .|++++++
T Consensus 131 --~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~ 208 (214)
T 2fh5_B 131 --KSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEK 208 (214)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHH
Confidence 444444333331 111 567999999999 99999999
Q ss_pred hhhh
Q 032030 142 ITHY 145 (148)
Q Consensus 142 ~~~~ 145 (148)
+++-
T Consensus 209 ~l~~ 212 (214)
T 2fh5_B 209 WLAK 212 (214)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 79
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.97 E-value=7.9e-06 Score=58.00 Aligned_cols=98 Identities=7% Similarity=0.053 Sum_probs=60.9
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------ccC----CCCcceeeEEEEecCCCCCchh
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RKG----GPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~~----~~qi~~ADivViNK~DL~~~~~ 106 (148)
+.+.++++.|....... .-..+|.+++++|+....... ... ...++ -++|+||+|+.+. .
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p--~i~v~nK~Dl~~~-~ 132 (177)
T 1wms_A 56 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP--FVILGNKIDISER-Q 132 (177)
T ss_dssp EEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC--EEEEEECTTCSSC-S
T ss_pred EEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc--EEEEEECCccccc-c
Confidence 45667777774321111 113468889999987653210 000 12334 5899999999743 0
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+.+.+..+. ....+++++||++|.|++++++++.-
T Consensus 133 ~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 133 VSTEEAQAWCRD-NGDYPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp SCHHHHHHHHHH-TTCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHh-cCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 223445554442 45678999999999999999998753
No 80
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.97 E-value=6.1e-06 Score=57.88 Aligned_cols=98 Identities=15% Similarity=0.019 Sum_probs=59.7
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCch---hh
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAI---GA 107 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~---~~ 107 (148)
+.+.++++.|........ -..+|.+++|+|+....... .......+ -++|+||+|+.+.. ..
T Consensus 52 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~~~~~~v 129 (170)
T 1ek0_A 52 VKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII--IALVGNKIDXLQEGGERKV 129 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE--EEEEEECGGGGGSSCCCCS
T ss_pred EEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc--EEEEEECCCccccccccCC
Confidence 456677777743111110 13568899999987653210 11123444 58999999997530 01
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 108 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 108 ~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
..+...+..+.. +.+++++||++|.|++++++++.-
T Consensus 130 ~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 130 AREEGEKLAEEK--GLLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp CHHHHHHHHHHH--TCEEEECCTTTCTTHHHHHHHHHT
T ss_pred CHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 112333444432 368999999999999999998753
No 81
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.97 E-value=9.3e-06 Score=66.80 Aligned_cols=100 Identities=18% Similarity=0.145 Sum_probs=57.6
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCC-Cccc------cCCCCcceeeEEEEecCCCCCchh--hhHHH
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGD-KIPR------KGGPGITQADLLVINKTDLASAIG--ADLAV 111 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~-~~~~------~~~~qi~~ADivViNK~DL~~~~~--~~l~~ 111 (148)
..+.++.|.|-... ..+ .-..+|..+.|+|+.++. .-+. .....++ --++++||+|+.+... ...++
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~-~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGID-KIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCC-CEEEEEECTTSSCTTTTTTHHHH
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCC-eEEEEEEccCCCCHHHHHHHHHH
Confidence 45778888884321 111 113469999999998764 2110 0000111 1379999999987510 23455
Q ss_pred HHHHHHhcC-CCCcEEEEEecCCCCHHHHHHhhh
Q 032030 112 MERDALRMR-DGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 112 ~~~~i~~~n-p~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.+.+++.. ...+++++||++|.|+++|++++.
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 193 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQ 193 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHH
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 666665432 467999999999999999999876
No 82
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.97 E-value=7.3e-06 Score=60.36 Aligned_cols=79 Identities=19% Similarity=0.045 Sum_probs=52.2
Q ss_pred cCceEEEEEeCCCCCCcc---c-------cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKIP---R-------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~---~-------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
.+|.+++|+|+.....+. . .....++ -++|+||+|+.+.-....+.+.+..+..+ ..+++++||++|
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p--iilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~~SA~~g 177 (201)
T 2hup_A 101 SANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV--QLLIGNKSDLSELREVSLAEAQSLAEHYD-ILCAIETSAKDS 177 (201)
T ss_dssp TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE--EEEEEECTTCGGGCCSCHHHHHHHHHHTT-CSEEEECBTTTT
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC--EEEEEECCccccccccCHHHHHHHHHHcC-CCEEEEEeCCCC
Confidence 578899999987643211 0 0112344 58999999997630022345555555432 238999999999
Q ss_pred CCHHHHHHhhhh
Q 032030 134 IGIIFTLSITHY 145 (148)
Q Consensus 134 ~gi~~l~~~~~~ 145 (148)
.|++++++++.-
T Consensus 178 ~gi~~l~~~l~~ 189 (201)
T 2hup_A 178 SNVEEAFLRVAT 189 (201)
T ss_dssp BSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999998753
No 83
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.96 E-value=6.6e-06 Score=61.01 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=58.2
Q ss_pred CEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHHH
Q 032030 45 DLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLAV 111 (148)
Q Consensus 45 D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~~ 111 (148)
.+.+++|.|.-..... .-..+|.+++|+|+....... .......+ -++|+||+|+.+.-....+.
T Consensus 76 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p--iilv~NK~Dl~~~~~v~~~~ 153 (201)
T 2ew1_A 76 KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI--TVLVGNKIDLAERREVSQQR 153 (201)
T ss_dssp EEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE--EEEEEECGGGGGGCSSCHHH
T ss_pred EEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC--EEEEEECCCCccccccCHHH
Confidence 4556666664211000 013578899999987653210 01122333 58899999997531011234
Q ss_pred HHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 112 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 112 ~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
..+..+.. +.+++++||++|.|++++++++.-
T Consensus 154 ~~~~~~~~--~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (201)
T 2ew1_A 154 AEEFSEAQ--DMYYLETSAKESDNVEKLFLDLAC 185 (201)
T ss_dssp HHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 44444433 368999999999999999998753
No 84
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.96 E-value=6.2e-06 Score=58.82 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=50.9
Q ss_pred cCceEEEEEeCCCCCCc---c-------cc---CCCCcceeeEEEEecCCCCC--chhhhHHHHHHHHHhcCCCCcEEEE
Q 032030 64 LADYIIYIIDVSGGDKI---P-------RK---GGPGITQADLLVINKTDLAS--AIGADLAVMERDALRMRDGGPFIFA 128 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~---~-------~~---~~~qi~~ADivViNK~DL~~--~~~~~l~~~~~~i~~~np~a~vi~t 128 (148)
.+|.+++|+|+...... . .. ..+.++ -++|.||+|+.+ .-....+...+..+.. ...+++++
T Consensus 72 ~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~p--iilv~nK~Dl~~~~~~~v~~~~~~~~~~~~-~~~~~~~~ 148 (178)
T 2iwr_A 72 WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA--LALVGTQDRISASSPRVVGDARARALXADM-KRCSYYET 148 (178)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCE--EEEEEECTTCBTTBCCCSCHHHHHHHHHHH-SSEEEEEE
T ss_pred hCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECccccccccCcCCHHHHHHHHHhh-cCCeEEEE
Confidence 46888999998765321 0 00 012344 689999999942 1001223444444433 34689999
Q ss_pred EecCCCCHHHHHHhhhh
Q 032030 129 QVGWVIGIIFTLSITHY 145 (148)
Q Consensus 129 Sa~~g~gi~~l~~~~~~ 145 (148)
||++|.|++++|+++.-
T Consensus 149 Sa~~~~~i~~lf~~l~~ 165 (178)
T 2iwr_A 149 XATYGLNVDRVFQEVAQ 165 (178)
T ss_dssp BTTTTBTHHHHHHHHHH
T ss_pred eccccCCHHHHHHHHHH
Confidence 99999999999998764
No 85
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.95 E-value=5.9e-06 Score=57.70 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=61.8
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------cc-CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RK-GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~-~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+.++++.|........ -..+|.+++|+|+....... .. .....+ -++|+||+|+.+.-....
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--iilv~nK~Dl~~~~~~~~ 129 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP--FLLVGNKSDLEDKRQVSV 129 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC--EEEEEECGGGGGGCCSCH
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc--EEEEEECccccccCccCH
Confidence 567788888853211111 12468889999987643210 00 112344 599999999976411223
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+...+..+..+ .+++++||++|.|++++++++.-
T Consensus 130 ~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T 1u8z_A 130 EEAKNRADQWN--VNYVETSAKTRANVDKVFFDLMR 163 (168)
T ss_dssp HHHHHHHHHHT--CEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CeEEEeCCCCCCCHHHHHHHHHH
Confidence 45566665544 58999999999999999998753
No 86
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.95 E-value=5.3e-06 Score=60.86 Aligned_cols=97 Identities=20% Similarity=0.087 Sum_probs=58.3
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCc---c-------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKI---P-------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~---~-------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.++++.|.-..... .-..+|.+++|+|+.....+ . .......+ -++|+||+|+... ....+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p--iilv~nK~Dl~~~-~~~~~ 145 (213)
T 3cph_A 69 VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ--LLLVGNKSDMETR-VVTAD 145 (213)
T ss_dssp EEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE--EEEEEECTTCSSC-CSCHH
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC--EEEEEECCCCccc-ccCHH
Confidence 34566666664211000 01356889999998765321 0 01112344 5899999999543 01223
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+..+..+ .+++++||++|.|++++++++.-
T Consensus 146 ~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 178 (213)
T 3cph_A 146 QGEALAKELG--IPFIESSAKNDDNVNEIFFTLAK 178 (213)
T ss_dssp HHHHHHHHHT--CCEEECBTTTTBSSHHHHHHHHH
T ss_pred HHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHH
Confidence 3444444433 58999999999999999998753
No 87
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.94 E-value=1.4e-05 Score=57.18 Aligned_cols=77 Identities=18% Similarity=0.120 Sum_probs=52.7
Q ss_pred cCceEEEEEeCCCCCCc---c-------c-cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEec-
Q 032030 64 LADYIIYIIDVSGGDKI---P-------R-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVG- 131 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~---~-------~-~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~- 131 (148)
.+|.+++|+|+.....+ . . .....++ -++|+||+|+.+.-....+...+..+..+ .+++++||+
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~ 164 (183)
T 3kkq_A 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP--MILVANKVDLMHLRKVTRDQGKEMATKYN--IPYIETSAKD 164 (183)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC--EEEEEECTTCSTTCCSCHHHHHHHHHHHT--CCEEEEBCSS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc--EEEEEECCCchhccCcCHHHHHHHHHHhC--CeEEEeccCC
Confidence 36888999998765211 0 0 0122344 58999999997631123345555566554 789999999
Q ss_pred CCCCHHHHHHhhh
Q 032030 132 WVIGIIFTLSITH 144 (148)
Q Consensus 132 ~g~gi~~l~~~~~ 144 (148)
+|.|++++++++.
T Consensus 165 ~~~~v~~l~~~l~ 177 (183)
T 3kkq_A 165 PPLNVDKTFHDLV 177 (183)
T ss_dssp SCBSHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 9999999999875
No 88
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.93 E-value=6.2e-06 Score=60.05 Aligned_cols=98 Identities=19% Similarity=0.128 Sum_probs=54.0
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------ccCC---CCcceeeEEEEecCCCCC-chh
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RKGG---PGITQADLLVINKTDLAS-AIG 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~~~---~qi~~ADivViNK~DL~~-~~~ 106 (148)
+.+.++++.|........ -..+|.+++|+|+....... .... ..++ -++|+||+|+.+ .-.
T Consensus 73 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p--iilv~nK~Dl~~~~~~ 150 (208)
T 2yc2_C 73 VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR--AVLVANKTDLPPQRHQ 150 (208)
T ss_dssp EEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE--EEEEEECC-------C
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc--EEEEEECcccchhhcc
Confidence 457788888863211111 13578899999987653210 0011 2344 599999999987 300
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecC-CCCHHHHHHhhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGW-VIGIIFTLSITHY 145 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~-g~gi~~l~~~~~~ 145 (148)
...+.+.+..++.+ .+++++||++ |.|++++++++.-
T Consensus 151 v~~~~~~~~~~~~~--~~~~~~Sa~~~~~gi~~l~~~i~~ 188 (208)
T 2yc2_C 151 VRLDMAQDWATTNT--LDFFDVSANPPGKDADAPFLSIAT 188 (208)
T ss_dssp CCHHHHHHHHHHTT--CEEEECCC-------CHHHHHHHH
T ss_pred CCHHHHHHHHHHcC--CEEEEeccCCCCcCHHHHHHHHHH
Confidence 22345666666554 6899999999 9999999998753
No 89
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.92 E-value=1.1e-05 Score=58.81 Aligned_cols=97 Identities=11% Similarity=0.073 Sum_probs=61.1
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc----------cccC-CCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI----------PRKG-GPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~----------~~~~-~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+.++++.|........ -..+|.+++|+|+.....+ .... ...++ -++|+||+|+.+.-....
T Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--iilv~nK~Dl~~~~~~~~ 139 (206)
T 2bov_A 62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP--FLLVGNKSDLEDKRQVSV 139 (206)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC--EEEEEECTTCGGGCCSCH
T ss_pred EEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEeccCccccccccH
Confidence 356677777743211110 1246888999998764321 0001 12344 599999999976411234
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+.+.+..+..+ .+++++||++|.|++++++++.
T Consensus 140 ~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~ 172 (206)
T 2bov_A 140 EEAKNRAEQWN--VNYVETSAKTRANVDKVFFDLM 172 (206)
T ss_dssp HHHHHHHHHHT--CEEEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 45666666544 5899999999999999999875
No 90
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.90 E-value=1.1e-05 Score=61.20 Aligned_cols=78 Identities=19% Similarity=0.151 Sum_probs=52.0
Q ss_pred cCceEEEEEeCCCCCCc---c-------ccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKI---P-------RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~---~-------~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
.++.++.+.|......+ . ....+.++ -+||.||+||.+.-.-..+...+..++.+ ++++.|||++|
T Consensus 85 ~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p--iilVgNK~Dl~~~r~V~~~e~~~~a~~~~--~~~~e~SAktg 160 (216)
T 4dkx_A 85 DSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI--IMLVGNKTDLADKRQVSIEEGERKAKELN--VMFIETSAKAG 160 (216)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE--EEEEEECTTCGGGCCSCHHHHHHHHHHHT--CEEEEEBTTTT
T ss_pred cccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe--EEEEeeccchHhcCcccHHHHhhHHHHhC--CeeEEEeCCCC
Confidence 46777888887654221 0 11123344 58899999997640012345566666554 68999999999
Q ss_pred CCHHHHHHhhhh
Q 032030 134 IGIIFTLSITHY 145 (148)
Q Consensus 134 ~gi~~l~~~~~~ 145 (148)
.|++++|+.++-
T Consensus 161 ~nV~e~F~~i~~ 172 (216)
T 4dkx_A 161 YNVKQLFRRVAA 172 (216)
T ss_dssp BSHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 999999998763
No 91
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.90 E-value=7.5e-06 Score=61.14 Aligned_cols=98 Identities=12% Similarity=-0.030 Sum_probs=56.8
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.+++|.|.-....+ .-..+|.+++|+|+....... ......++ -++|+||+|+.+.-....+
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p--iilv~nK~Dl~~~~~v~~~ 139 (223)
T 3cpj_B 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA--VGLIGNKSDLAHLRAVPTE 139 (223)
T ss_dssp EEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE--EEEEECCGGGGGGCCSCHH
T ss_pred EEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe--EEEEEECcccccccccCHH
Confidence 34556666664211001 113468889999987653211 00112334 5899999999753111223
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+..+.. +.+++++||++|.|++++++++.-
T Consensus 140 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 172 (223)
T 3cpj_B 140 ESKTFAQEN--QLLFTETSALNSENVDKAFEELIN 172 (223)
T ss_dssp HHHHHHHHT--TCEEEECCCC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 455555543 368999999999999999998753
No 92
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.89 E-value=1.1e-05 Score=56.78 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=60.2
Q ss_pred CCCEEEEecCCceeeee-ecc---ccCceEEEEEeCCCCCCcc----------ccC-CCCcceeeEEEEecCCCCCchhh
Q 032030 43 KADLLLCESGGDNLAAN-FSR---ELADYIIYIIDVSGGDKIP----------RKG-GPGITQADLLVINKTDLASAIGA 107 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~-~~~---~~~d~~i~vvDa~~~~~~~----------~~~-~~qi~~ADivViNK~DL~~~~~~ 107 (148)
.+.+.+.++.|...... +.+ ..+|.++.|+|+....... ... ...++ -++|+||+|+.+.-..
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl~~~~~~ 127 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP--VILVGNKSDLARSREV 127 (169)
T ss_dssp EEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC--EEEEEECTTCGGGCCS
T ss_pred EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC--EEEEeeCcchhhcccC
Confidence 34566778887643211 111 2368889999987642110 001 12344 6899999999754112
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 108 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 108 ~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..+...+..+.. +.+++++||++|.|++++++++.
T Consensus 128 ~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~ 162 (169)
T 3q85_A 128 SLEEGRHLAGTL--SCKHIETSAALHHNTRELFEGAV 162 (169)
T ss_dssp CHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHH
T ss_pred CHHHHHHHHHHc--CCcEEEecCccCCCHHHHHHHHH
Confidence 234455555544 46899999999999999999875
No 93
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.89 E-value=5.6e-07 Score=69.95 Aligned_cols=95 Identities=19% Similarity=0.079 Sum_probs=61.3
Q ss_pred CCCEEEEecCCceeee------e----e-----ccccCceEEEEEeCCCCCCc----cccCCCCcceeeEEEEecCCCCC
Q 032030 43 KADLLLCESGGDNLAA------N----F-----SRELADYIIYIIDVSGGDKI----PRKGGPGITQADLLVINKTDLAS 103 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~------~----~-----~~~~~d~~i~vvDa~~~~~~----~~~~~~qi~~ADivViNK~DL~~ 103 (148)
+..+.++.|.|.--.. . + .....|.++.|+|+.+.+.. .......++ -++|+||+|+.+
T Consensus 47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~p--vilv~NK~Dl~~ 124 (256)
T 3iby_A 47 EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKP--VVVALNMMDIAE 124 (256)
T ss_dssp TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSC--EEEEEECHHHHH
T ss_pred CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCC--EEEEEEChhcCC
Confidence 3468899999973211 1 1 01357999999999874321 111122344 799999999875
Q ss_pred ch--hhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 104 AI--GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 104 ~~--~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.- ....+.+.+.+ +.|++++||++|.|++++++++.
T Consensus 125 ~~~~~~~~~~l~~~l-----g~~vi~~SA~~g~gi~el~~~i~ 162 (256)
T 3iby_A 125 HRGISIDTEKLESLL-----GCSVIPIQAHKNIGIPALQQSLL 162 (256)
T ss_dssp HTTCEECHHHHHHHH-----CSCEEECBGGGTBSHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHc-----CCCEEEEECCCCCCHHHHHHHHH
Confidence 41 01223333332 36999999999999999999874
No 94
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.89 E-value=9.4e-06 Score=57.88 Aligned_cols=98 Identities=11% Similarity=0.076 Sum_probs=61.1
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------cc-CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RK-GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~-~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+.++++.|........ -..+|.+++|+|+....... .. ....++ -++|+||+|+.+.-....
T Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--iilv~nK~Dl~~~~~~~~ 143 (187)
T 2a9k_A 66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP--FLLVGNKSDLEDKRQVSV 143 (187)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC--EEEEEECGGGGGGCCSCH
T ss_pred EEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECccccccCccCH
Confidence 355666777743211110 12468889999987643210 00 112344 589999999976411234
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+.+.+..+..+ .+++++||++|.|++++++++.-
T Consensus 144 ~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 177 (187)
T 2a9k_A 144 EEAKNRAEQWN--VNYVETSAKTRANVDKVFFDLMR 177 (187)
T ss_dssp HHHHHHHHHTT--CEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CeEEEeCCCCCCCHHHHHHHHHH
Confidence 55666666543 58999999999999999998753
No 95
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.88 E-value=7.8e-07 Score=65.28 Aligned_cols=96 Identities=20% Similarity=0.212 Sum_probs=54.6
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----------ccCCCCcceeeEEEEecCCCCCchhhhH-
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----------RKGGPGITQADLLVINKTDLASAIGADL- 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----------~~~~~qi~~ADivViNK~DL~~~~~~~l- 109 (148)
+.+.++++.|.-..... .-..+|.+++|+|+.....+. ......++ -++|+||+|+.+. ...
T Consensus 82 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p--~ilv~nK~Dl~~~--~~v~ 157 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN--KLLVGNKCDLTTK--KVVD 157 (199)
T ss_dssp EEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE--EEEC-CCSSCC----CCCC
T ss_pred EEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC--EEEEEECccCCcc--ccCC
Confidence 56778888885321111 113578899999988753210 11112344 5899999999764 322
Q ss_pred -HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 -AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 -~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+...+..+.. +.+++++||++|.|++++++++.-
T Consensus 158 ~~~~~~~~~~~--~~~~~~vSA~~g~gv~~l~~~l~~ 192 (199)
T 3l0i_B 158 YTTAKEFADSL--GIPFLETSAKNATNVEQSFMTMAA 192 (199)
T ss_dssp SCC-CHHHHTT--TCCBCCCCC---HHHHHHHHHHTT
T ss_pred HHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHH
Confidence 2334444433 368999999999999999998764
No 96
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.87 E-value=2.4e-05 Score=54.27 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=62.1
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------cc-CCCCcceeeEEEEecCCCCCchhhh
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RK-GGPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~-~~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
.+++.++++.|........ -..+|.+++++|+....... .. ....++ -++|+||+|+.+.. ..
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p--~iiv~nK~Dl~~~~-~~ 126 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP--MVLVGNKSDLAART-VE 126 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC--EEEEEECTTCSCCC-SC
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc--EEEEEEchhhhhcc-cC
Confidence 4567788888854211111 12468889999987543210 00 011344 58999999998640 22
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 109 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 109 l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+...+..++.+ .+++++||++|.|++++++++.-
T Consensus 127 ~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 161 (166)
T 2ce2_X 127 SRQAQDLARSYG--IPYIETSAKTRQGVEDAFYTLVR 161 (166)
T ss_dssp HHHHHHHHHHHT--CCEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHH
Confidence 234444444433 58999999999999999998764
No 97
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.86 E-value=9.9e-06 Score=59.25 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=49.5
Q ss_pred cCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCch------hhhHHHHHHHHHhcCCCCcEEE
Q 032030 64 LADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAI------GADLAVMERDALRMRDGGPFIF 127 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~------~~~l~~~~~~i~~~np~a~vi~ 127 (148)
.+|.+++|+|+........ .....++ -++|+||+|+.+.. .-..+...+..+.. +.++++
T Consensus 100 ~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p--iilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~ 175 (199)
T 2p5s_A 100 KADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP--IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY--GALFCE 175 (199)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC--EEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH--TCEEEE
T ss_pred hCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC--EEEEEECcccccccccccccccCHHHHHHHHHHc--CCeEEE
Confidence 4688999999876532110 0112344 68999999996320 01122334444433 358999
Q ss_pred EEecCCCCHHHHHHhhhh
Q 032030 128 AQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 128 tSa~~g~gi~~l~~~~~~ 145 (148)
+||++|.|++++++++.-
T Consensus 176 ~SA~~g~gv~el~~~l~~ 193 (199)
T 2p5s_A 176 TSAKDGSNIVEAVLHLAR 193 (199)
T ss_dssp CCTTTCTTHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHH
Confidence 999999999999998764
No 98
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.86 E-value=2.9e-07 Score=72.05 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=60.6
Q ss_pred CCCEEEEecCCceeeee------e---------ccccCceEEEEEeCCCCCCcc----ccCCCCcceeeEEEEecCCCCC
Q 032030 43 KADLLLCESGGDNLAAN------F---------SRELADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLAS 103 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~------~---------~~~~~d~~i~vvDa~~~~~~~----~~~~~qi~~ADivViNK~DL~~ 103 (148)
+..+.++.|.|...... . .....|.++.|+|+.+.+... ......++ -++|+||+|+.+
T Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p--~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIP--CIVALNMLDIAE 126 (274)
T ss_dssp SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCC--EEEEEECHHHHH
T ss_pred CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCC--EEEEEECccchh
Confidence 45688899999632110 0 013578999999987643211 01111344 799999999875
Q ss_pred chh--hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 104 AIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 104 ~~~--~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.-. ...+.+.+.+ +.|++++||++|.|++++++++.
T Consensus 127 ~~~~~~~~~~l~~~l-----g~~~i~~SA~~g~gi~el~~~i~ 164 (274)
T 3i8s_A 127 KQNIRIEIDALSARL-----GCPVIPLVSTRGRGIEALKLAID 164 (274)
T ss_dssp HTTEEECHHHHHHHH-----TSCEEECCCGGGHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhc-----CCCEEEEEcCCCCCHHHHHHHHH
Confidence 400 1223333332 26899999999999999998875
No 99
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.86 E-value=4.4e-06 Score=59.33 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=59.8
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------c-cCCCCcceeeEEEEecCCCCCchhhh-
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------R-KGGPGITQADLLVINKTDLASAIGAD- 108 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~-~~~~qi~~ADivViNK~DL~~~~~~~- 108 (148)
+.+.++++.|........ -..+|.+++|+|+....... . .....++ -++|+||+|+.+. .+
T Consensus 57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~v 132 (181)
T 2fn4_A 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP--VVLVGNKADLESQ--RQV 132 (181)
T ss_dssp EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC--EEEEEECGGGGGG--CCS
T ss_pred EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECcccccc--ccc
Confidence 455667777743111110 12468889999987643210 0 0122344 5999999999764 22
Q ss_pred -HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 109 -LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 109 -l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+...+..+. .+.+++++||++|.|++++++++.-
T Consensus 133 ~~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~l~~~l~~ 168 (181)
T 2fn4_A 133 PRSEASAFGAS--HHVAYFEASAKLRLNVDEAFEQLVR 168 (181)
T ss_dssp CHHHHHHHHHH--TTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred CHHHHHHHHHH--cCCeEEEecCCCCCCHHHHHHHHHH
Confidence 2334444443 3568999999999999999998753
No 100
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.85 E-value=1.8e-05 Score=56.78 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=49.4
Q ss_pred cCceEEEEEeCCCCCCc-c---------------c-cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcC-C----
Q 032030 64 LADYIIYIIDVSGGDKI-P---------------R-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMR-D---- 121 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~-~---------------~-~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~n-p---- 121 (148)
..+.++.++|+..+... . . .....++ -++|+||+|+.+. . .+...+..++.+ +
T Consensus 82 ~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~ 156 (190)
T 2cxx_A 82 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP--TIVAVNKLDKIKN--V-QEVINFLAEKFEVPLSEI 156 (190)
T ss_dssp GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC--EEEEEECGGGCSC--H-HHHHHHHHHHHTCCGGGH
T ss_pred cCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc--eEEEeehHhccCc--H-HHHHHHHHHHhhhhhhcc
Confidence 45677888997654221 0 0 0112344 6999999999886 3 223333333333 2
Q ss_pred CCcEEEEEecCCCCHHHHHHhhhh
Q 032030 122 GGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 122 ~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
..+++++||++|.|++++++++.-
T Consensus 157 ~~~~~~~Sa~~~~~v~~l~~~l~~ 180 (190)
T 2cxx_A 157 DKVFIPISAKFGDNIERLKNRIFE 180 (190)
T ss_dssp HHHEEECCTTTCTTHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCHHHHHHHHHH
Confidence 236899999999999999998753
No 101
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.84 E-value=1.2e-05 Score=57.48 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=57.8
Q ss_pred CEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------c-cCCCCcceeeEEEEecCCCCCchhh-hH
Q 032030 45 DLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------R-KGGPGITQADLLVINKTDLASAIGA-DL 109 (148)
Q Consensus 45 D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~-~~~~qi~~ADivViNK~DL~~~~~~-~l 109 (148)
.+.++++.|......+. -..+|.+++|+|+....... . ......+ -++|+||+|+.+. . ..
T Consensus 53 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--~i~v~nK~Dl~~~--~~~~ 128 (189)
T 4dsu_A 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP--MVLVGNKCDLPSR--TVDT 128 (189)
T ss_dssp EEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC--EEEEEECTTSSSC--SSCH
T ss_pred EEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc--EEEEEECccCccc--ccCH
Confidence 35567777743211111 12468889999987642110 0 0112344 6899999999764 3 22
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+...+..+..+ .+++++||++|.|++++++++.
T Consensus 129 ~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 129 KQAQDLARSYG--IPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp HHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 34444444433 6899999999999999998875
No 102
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.84 E-value=1.4e-05 Score=56.73 Aligned_cols=100 Identities=15% Similarity=0.027 Sum_probs=59.8
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc---cCC---CCc----cee-eEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR---KGG---PGI----TQA-DLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~---~~~---~qi----~~A-DivViNK~DL~~~~~~~l 109 (148)
+.+.++++.|....... .-..+|.+++|+|+........ ... ... ... -++|+||+|+.+.-....
T Consensus 56 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~ 135 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKP 135 (178)
T ss_dssp EEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCH
T ss_pred EEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCH
Confidence 45677777774321111 0135788999999876532110 000 000 111 378999999975300112
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+...+..+..+ .+++++||++|.|++++++++.-
T Consensus 136 ~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 169 (178)
T 2hxs_A 136 EKHLRFCQENG--FSSHFVSAKTGDSVFLCFQKVAA 169 (178)
T ss_dssp HHHHHHHHHHT--CEEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CcEEEEeCCCCCCHHHHHHHHHH
Confidence 34445555433 68999999999999999998763
No 103
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.83 E-value=5.3e-05 Score=54.65 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=59.8
Q ss_pred CCEEEEecCCceeee-eec---cccCceEEEEEeCCCCCCc---c-------ccC-CCCcceeeEEEEecCCCCCchhhh
Q 032030 44 ADLLLCESGGDNLAA-NFS---RELADYIIYIIDVSGGDKI---P-------RKG-GPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 44 ~D~IliEtsG~~~~~-~~~---~~~~d~~i~vvDa~~~~~~---~-------~~~-~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
+.+.++++.|..... ... -..+|.+++|+|+...... . ... ....+ -++|+||+|+.+.....
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p--iilv~nK~Dl~~~~~v~ 146 (189)
T 1z06_A 69 IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP--RILVGNKCDLRSAIQVP 146 (189)
T ss_dssp EEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC--EEEEEECTTCGGGCCSC
T ss_pred EEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECccccccceeC
Confidence 456677777742111 110 1357889999998764211 0 111 22344 68999999997541112
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCC---CCHHHHHHhhh
Q 032030 109 LAVMERDALRMRDGGPFIFAQVGWV---IGIIFTLSITH 144 (148)
Q Consensus 109 l~~~~~~i~~~np~a~vi~tSa~~g---~gi~~l~~~~~ 144 (148)
.+...+..+.. +.+++++||++| .|++++++++.
T Consensus 147 ~~~~~~~~~~~--~~~~~~~Sa~~~~~~~~i~~l~~~l~ 183 (189)
T 1z06_A 147 TDLAQKFADTH--SMPLFETSAKNPNDNDHVEAIFMTLA 183 (189)
T ss_dssp HHHHHHHHHHT--TCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred HHHHHHHHHHc--CCEEEEEeCCcCCcccCHHHHHHHHH
Confidence 23444444433 368999999999 99999999875
No 104
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.83 E-value=2.4e-05 Score=67.73 Aligned_cols=99 Identities=17% Similarity=0.085 Sum_probs=61.6
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchh--------
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIG-------- 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~-------- 106 (148)
+.+.|+.|.|-....... -..+|..+.|+|+.++...+. .....+| -++++||+|+.+...
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP--iIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP--FVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC--EEEEEECGGGSTTCCCCTTCCHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe--EEEEecccccccccccccCCchH
Confidence 358999999964211111 134799999999998743111 1112345 699999999975210
Q ss_pred -------h----h----HHHHHHHHHhc-------------CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 -------A----D----LAVMERDALRM-------------RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 -------~----~----l~~~~~~i~~~-------------np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
. . +..+.+.+.+. ....|++++||++|.|+++|++++.
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~ 213 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLM 213 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHH
Confidence 0 0 11122222221 2335899999999999999999875
No 105
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.82 E-value=1.9e-05 Score=60.86 Aligned_cols=77 Identities=17% Similarity=0.080 Sum_probs=54.0
Q ss_pred cCceEEEEEeCCCC--CCccc---c--------CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEe
Q 032030 64 LADYIIYIIDVSGG--DKIPR---K--------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV 130 (148)
Q Consensus 64 ~~d~~i~vvDa~~~--~~~~~---~--------~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa 130 (148)
.+|.+++|+|+... ..+.. . ....++ -++|.||+||.+. ..++...+..++. ...+++.+||
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~p--iilV~NK~Dl~~~--~~v~~~~~~~~~~-~~~~~~e~SA 236 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKP--IVVVLTKCDEGVE--RYIRDAHTFALSK-KNLQVVETSA 236 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCC--EEEEEECGGGBCH--HHHHHHHHHHHTS-SSCCEEECBT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCC--EEEEEEccccccc--HHHHHHHHHHHhc-CCCeEEEEEC
Confidence 37999999999775 32110 0 012344 5899999999876 6565565555432 3578999999
Q ss_pred cCCCCHHHHHHhhhh
Q 032030 131 GWVIGIIFTLSITHY 145 (148)
Q Consensus 131 ~~g~gi~~l~~~~~~ 145 (148)
++|.|++++++++.-
T Consensus 237 k~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 237 RSNVNVDLAFSTLVQ 251 (255)
T ss_dssp TTTBSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999998764
No 106
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.82 E-value=4e-06 Score=58.92 Aligned_cols=96 Identities=13% Similarity=0.080 Sum_probs=60.1
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc---ccc-------C--CCCcceeeEEEEecCCCCCchhhh
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI---PRK-------G--GPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~---~~~-------~--~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
+.+.+++|.|........ -..+|.+++++|+...... ... . .+..+ -++|+||+|+.+. .+
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p--ii~v~nK~Dl~~~--~~ 126 (172)
T 2erx_A 51 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP--IMLVGNKCDESPS--RE 126 (172)
T ss_dssp EEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC--EEEEEECGGGGGG--CC
T ss_pred EEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC--EEEEEEccccccc--cc
Confidence 457788888853211110 1246889999998754211 100 0 02344 5999999999764 22
Q ss_pred H--HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 109 L--AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 109 l--~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+ +...+..+.. +.+++++||++|.|++++++++.-
T Consensus 127 v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (172)
T 2erx_A 127 VQSSEAEALARTW--KCAFMETSAKLNHNVKELFQELLN 163 (172)
T ss_dssp SCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHh--CCeEEEecCCCCcCHHHHHHHHHH
Confidence 2 2333444433 368999999999999999998754
No 107
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.80 E-value=2.1e-05 Score=62.99 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=70.1
Q ss_pred CCeeeeeccchhhchHHHHHhhhhcCCCEEEEecCC--ceee-------eeecc---ccCceEEEEEeCCCCCCcccc--
Q 032030 18 GCPHAAIREDISINLGPLEELSNLFKADLLLCESGG--DNLA-------ANFSR---ELADYIIYIIDVSGGDKIPRK-- 83 (148)
Q Consensus 18 Gcicc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG--~~~~-------~~~~~---~~~d~~i~vvDa~~~~~~~~~-- 83 (148)
|-.-|.+|+.+...-. .-.-=|+|.++..+ .+.. ..+.+ ..+|.++.|+|+..++--...
T Consensus 34 ~~~~~~~rg~~~~~~~------~~~vGD~V~~~~~~~~~~~i~~i~~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~ 107 (307)
T 1t9h_A 34 KVIQCRGRGIFRKNKI------TPLVGDYVVYQAENDKEGYLMEIKERTNELIRPPICNVDQAVLVFSAVQPSFSTALLD 107 (307)
T ss_dssp EEEEEESCSSCCSCCC------CCCBTCEEEEECCTTSCEEEEEECCCSCEETTTTEECCCEEEEEEESTTTTCCHHHHH
T ss_pred cEEEEEEcccccccCC------CCCCCeEEEEEEcCCCceEEEEEcchhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHH
Confidence 3456877776531100 01135899998654 2321 12222 246889999999865431110
Q ss_pred ------CCCCcceeeEEEEecCCCCCchhhh----HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 84 ------GGPGITQADLLVINKTDLASAIGAD----LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 84 ------~~~qi~~ADivViNK~DL~~~~~~~----l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
....++ -++|+||+||+++ .+ ++.+.+.+++. +.+++.+||++|.|+++|++..
T Consensus 108 r~L~~~~~~~~~--~vivlnK~DL~~~--~~~~~~~~~~~~~y~~~--g~~v~~~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 108 RFLVLVEANDIQ--PIICITKMDLIED--QDTEDTIQAYAEDYRNI--GYDVYLTSSKDQDSLADIIPHF 171 (307)
T ss_dssp HHHHHHHTTTCE--EEEEEECGGGCCC--HHHHHHHHHHHHHHHHH--TCCEEECCHHHHTTCTTTGGGG
T ss_pred HHHHHHHHCCCC--EEEEEECCccCch--hhhHHHHHHHHHHHHhC--CCeEEEEecCCCCCHHHHHhhc
Confidence 112344 4999999999987 55 45555666543 3589999999999998887643
No 108
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.80 E-value=3.8e-05 Score=66.62 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=62.1
Q ss_pred CCEEEEecCCceeee-ee--ccccCceEEEEEeCCCCCCcccc------CCCCcceeeEEEEecCCCCCchhhhHHHHHH
Q 032030 44 ADLLLCESGGDNLAA-NF--SRELADYIIYIIDVSGGDKIPRK------GGPGITQADLLVINKTDLASAIGADLAVMER 114 (148)
Q Consensus 44 ~D~IliEtsG~~~~~-~~--~~~~~d~~i~vvDa~~~~~~~~~------~~~qi~~ADivViNK~DL~~~~~~~l~~~~~ 114 (148)
+.+-++.|.|-.... .. .-..+|..+.|+|+.++...+.. ....++ -++++||+|+.+. . .+++.+
T Consensus 71 ~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip--iIvViNKiDl~~a--~-~~~v~~ 145 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE--VVPVLNKIDLPAA--D-PERVAE 145 (599)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE--EEEEEECTTSTTC--C-HHHHHH
T ss_pred EEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC--EEEeeeccCcccc--c-HHHHHH
Confidence 455688888853210 00 01246889999999887542210 112445 6999999999875 3 333334
Q ss_pred HHHhcC--CCCcEEEEEecCCCCHHHHHHhhh
Q 032030 115 DALRMR--DGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 115 ~i~~~n--p~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+++.. +..+++++||++|.|+++|++++.
T Consensus 146 ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~ 177 (599)
T 3cb4_D 146 EIEDIVGIDATDAVRCSAKTGVGVQDVLERLV 177 (599)
T ss_dssp HHHHHTCCCCTTCEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHhCCCcceEEEeecccCCCchhHHHHHh
Confidence 444332 234689999999999999999875
No 109
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.80 E-value=1.9e-05 Score=65.58 Aligned_cols=78 Identities=19% Similarity=0.180 Sum_probs=52.3
Q ss_pred CceEEEEEeCCCCCCccc-c---CCCCcceeeEEEEecCCCCCchhhh--HHHHHHHHHhc---CCCCcEEEEEecCCCC
Q 032030 65 ADYIIYIIDVSGGDKIPR-K---GGPGITQADLLVINKTDLASAIGAD--LAVMERDALRM---RDGGPFIFAQVGWVIG 135 (148)
Q Consensus 65 ~d~~i~vvDa~~~~~~~~-~---~~~qi~~ADivViNK~DL~~~~~~~--l~~~~~~i~~~---np~a~vi~tSa~~g~g 135 (148)
+|.++.++|+..+..... . .......+-++|+||+|+.+. .. .+++.+.+++. .+.++++++||++|.|
T Consensus 264 ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 341 (439)
T 1mky_A 264 ADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVH--REKRYDEFTKLFREKLYFIDYSPLIFTSADKGWN 341 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTT--GGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBS
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCc--hhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCC
Confidence 577888899876543111 0 000122346999999999875 33 44455444332 2568999999999999
Q ss_pred HHHHHHhhh
Q 032030 136 IIFTLSITH 144 (148)
Q Consensus 136 i~~l~~~~~ 144 (148)
++++++.+.
T Consensus 342 v~~l~~~i~ 350 (439)
T 1mky_A 342 IDRMIDAMN 350 (439)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 110
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.79 E-value=2.7e-05 Score=67.63 Aligned_cols=96 Identities=22% Similarity=0.158 Sum_probs=62.9
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHHH
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVMER 114 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~ 114 (148)
+.+-|+.|.|-... ... .-..+|..+.|+|+.++...+. .....++ -++++||+|+.+. . .+++.+
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip--iIvviNKiDl~~a--~-~~~v~~ 147 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV--IIPVINKIDLPSA--D-VDRVKK 147 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE--EEEEEECTTSTTC--C-HHHHHH
T ss_pred EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC--EEEEEeccCcccc--C-HHHHHH
Confidence 34558888886421 000 0135688999999998754221 0112455 7999999999875 3 344444
Q ss_pred HHHhcCC--CCcEEEEEecCCCCHHHHHHhhh
Q 032030 115 DALRMRD--GGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 115 ~i~~~np--~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+++... ..+++++||++|.|+++|++++.
T Consensus 148 el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~ 179 (600)
T 2ywe_A 148 QIEEVLGLDPEEAILASAKEGIGIEEILEAIV 179 (600)
T ss_dssp HHHHTSCCCGGGCEECBTTTTBSHHHHHHHHH
T ss_pred HHHHhhCCCcccEEEEEeecCCCchHHHHHHH
Confidence 5554332 23689999999999999999864
No 111
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.79 E-value=6.3e-06 Score=62.13 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=48.1
Q ss_pred cCceEEEEEeCCCCCC------cc---ccC--CCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecC
Q 032030 64 LADYIIYIIDVSGGDK------IP---RKG--GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~------~~---~~~--~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~ 132 (148)
.+|..+.|.|...... +. ... ...++ -++|.||+||.+.-.-..+......+.. +.+++++||++
T Consensus 111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p--iilVgNK~DL~~~r~v~~~e~~~~a~~~--~~~~~e~SAk~ 186 (211)
T 2g3y_A 111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP--IILVGNKSDLVRCREVSVSEGRACAVVF--DCKFIETSAAV 186 (211)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC--EEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEECBTTT
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc--EEEEEEChHHhcCceEeHHHHHHHHHHc--CCEEEEEeCCC
Confidence 3577788888765321 10 000 12344 5899999999753001122233333333 36899999999
Q ss_pred CCCHHHHHHhhhh
Q 032030 133 VIGIIFTLSITHY 145 (148)
Q Consensus 133 g~gi~~l~~~~~~ 145 (148)
|.|++++|++++-
T Consensus 187 g~~v~elf~~l~~ 199 (211)
T 2g3y_A 187 QHNVKELFEGIVR 199 (211)
T ss_dssp TBSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998764
No 112
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.78 E-value=8.5e-06 Score=56.81 Aligned_cols=98 Identities=17% Similarity=0.084 Sum_probs=60.0
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc----------cc-cCCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI----------PR-KGGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~----------~~-~~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
..+.++++.|........ -..+|.+++++|+...... .. ......+ -++|+||+|+.++-....
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--iilv~nK~Dl~~~~~~~~ 128 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP--VILVGNKVDLESEREVSS 128 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC--EEEEEECGGGGGGCCSCH
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECCcccccccCCH
Confidence 346677777743211110 1246888999998764321 01 1112344 689999999975411112
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+...+..+.. +.+++++||++|.|++++++++.-
T Consensus 129 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 162 (167)
T 1kao_A 129 SEGRALAEEW--GCPFMETSAKSKTMVDELFAEIVR 162 (167)
T ss_dssp HHHHHHHHHH--TSCEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCEEEecCCCCcCHHHHHHHHHH
Confidence 3444444443 358999999999999999998753
No 113
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.78 E-value=3.2e-05 Score=56.74 Aligned_cols=78 Identities=17% Similarity=0.074 Sum_probs=51.8
Q ss_pred cCceEEEEEeCCCCCCc---cc----c---CC-CCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecC
Q 032030 64 LADYIIYIIDVSGGDKI---PR----K---GG-PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~---~~----~---~~-~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~ 132 (148)
.+|.+++|+|+.....+ .. . .. ..++ -++|.||+|+.+.-....+...+..+..+ .+++++||++
T Consensus 96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--iilv~nK~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sa~~ 171 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP--VILVGNKSDLARSREVSLEEGRHLAGTLS--CKHIETSAAL 171 (195)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC--EEEEEECTTCTTTCCSCHHHHHHHHHHTT--CEEEEEBTTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEeechhccccCCcCHHHHHHHHHHhC--CEEEEEcCCC
Confidence 36888999998754211 00 0 01 2344 58999999997641122344555555443 6899999999
Q ss_pred CCCHHHHHHhhhh
Q 032030 133 VIGIIFTLSITHY 145 (148)
Q Consensus 133 g~gi~~l~~~~~~ 145 (148)
|.|++++|+++.-
T Consensus 172 ~~~v~~lf~~l~~ 184 (195)
T 3cbq_A 172 HHNTRELFEGAVR 184 (195)
T ss_dssp TBSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998753
No 114
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.77 E-value=2.1e-05 Score=63.70 Aligned_cols=97 Identities=22% Similarity=0.187 Sum_probs=60.8
Q ss_pred CCEEEEecCCcee--------eeeecc--ccCceEEEEEeCCCC---CCc---c------ccCC---CCcceeeEEEEec
Q 032030 44 ADLLLCESGGDNL--------AANFSR--ELADYIIYIIDVSGG---DKI---P------RKGG---PGITQADLLVINK 98 (148)
Q Consensus 44 ~D~IliEtsG~~~--------~~~~~~--~~~d~~i~vvDa~~~---~~~---~------~~~~---~qi~~ADivViNK 98 (148)
..++++.+.|... ...|.. ..+|.+++|+|+... ... . ..+. ...+ -++|+||
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p--~ilV~NK 283 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP--QIIVANK 283 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC--BCBEEEC
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC--EEEEEEC
Confidence 4567777777421 111211 236889999999762 110 0 0111 1333 5999999
Q ss_pred CCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhhh
Q 032030 99 TDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 99 ~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
+|+.+. .+ .+.+..+.+....+++++||+++.|+++|++++.-.
T Consensus 284 ~Dl~~~--~e--~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~ 327 (342)
T 1lnz_A 284 MDMPEA--AE--NLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQ 327 (342)
T ss_dssp TTSTTH--HH--HHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHH
T ss_pred ccCCCC--HH--HHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHH
Confidence 999865 32 333333444444689999999999999999987643
No 115
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.77 E-value=3.7e-05 Score=55.20 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=63.5
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc---cC-----CCCcceeeEEEEecCCCCCchhhhHHHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR---KG-----GPGITQADLLVINKTDLASAIGADLAVM 112 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~---~~-----~~qi~~ADivViNK~DL~~~~~~~l~~~ 112 (148)
..+.+++|.|....... .-..+|.+++|+|+..+..... .. ....+ -++|+||+|+... ....+.+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p--iilv~NK~D~~~~-~~~~~~~ 169 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI--IILVANKIDKNKF-QVDILEV 169 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE--EEEEEECTTCC-C-CSCHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc--EEEEEECCCcccc-cCCHHHH
Confidence 67889999995321111 1135789999999987632110 00 01133 6999999994321 1334567
Q ss_pred HHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 113 ERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 113 ~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+.+++. +.+++++||++|.|++++++++.-
T Consensus 170 ~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~ 200 (208)
T 3clv_A 170 QKYAQDN--NLLFIQTSAKTGTNIKNIFYMLAE 200 (208)
T ss_dssp HHHHHHT--TCEEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHc--CCcEEEEecCCCCCHHHHHHHHHH
Confidence 7777654 459999999999999999998753
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.76 E-value=2.4e-06 Score=66.38 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=61.2
Q ss_pred CCCEEEEecCCceee----------eeec-cccCceEEEEEeCCCCCCcc----ccCCCCcceeeEEEEecCCCCCchh-
Q 032030 43 KADLLLCESGGDNLA----------ANFS-RELADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLASAIG- 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~----------~~~~-~~~~d~~i~vvDa~~~~~~~----~~~~~qi~~ADivViNK~DL~~~~~- 106 (148)
+..+.++.+.|.--. ..+. ....|.++.|+|+...+... ......++ -++|+||+|+...-.
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~p--vilv~NK~Dl~~~~~i 128 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKK--VILAMTAIDEAKKTGM 128 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCC--EEEEEECHHHHHHTTC
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCC--EEEEEECcCCCCccch
Confidence 457888899986321 1111 13578999999998764311 11122344 699999999865300
Q ss_pred -hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 -ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 -~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+.+++.+ .++ .|++++||++|.|++++++++.
T Consensus 129 ~~~~~~l~~---~lg--~~vi~~SA~~g~gi~el~~~i~ 162 (258)
T 3a1s_A 129 KIDRYELQK---HLG--IPVVFTSSVTGEGLEELKEKIV 162 (258)
T ss_dssp CBCHHHHHH---HHC--SCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHH---HcC--CCEEEEEeeCCcCHHHHHHHHH
Confidence 12233333 222 6899999999999999998764
No 117
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.96 E-value=3.5e-06 Score=61.83 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=58.3
Q ss_pred CCCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCccc----cC------CCCcceeeEEEEecCCCCCchhhh-
Q 032030 43 KADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPR----KG------GPGITQADLLVINKTDLASAIGAD- 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~~----~~------~~qi~~ADivViNK~DL~~~~~~~- 108 (148)
.+.+.+++|.|........ -..+|.+++|+|+........ .. .+.++ -++|+||+|+.+. ..
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~p--iilv~NK~Dl~~~--~~~ 152 (204)
T 3th5_A 77 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP--IILVGTKLDLRDD--KDT 152 (204)
Confidence 3455578888864211111 134688899999876532211 11 01233 5899999999764 21
Q ss_pred -------------HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 109 -------------LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 109 -------------l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+...+..+.. ...+++++||++|.|++++++++.-
T Consensus 153 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 153 IEKLKEKKLTPITYPQGLAMAKEI-GAVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 11222222221 1237899999999999999998753
No 118
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.76 E-value=1.4e-06 Score=67.58 Aligned_cols=96 Identities=22% Similarity=0.174 Sum_probs=60.7
Q ss_pred CCCEEEEecCCceeeee----------e-ccccCceEEEEEeCCCCCCcc----ccCCCC-cceeeEEEEecCCCCCchh
Q 032030 43 KADLLLCESGGDNLAAN----------F-SRELADYIIYIIDVSGGDKIP----RKGGPG-ITQADLLVINKTDLASAIG 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~----------~-~~~~~d~~i~vvDa~~~~~~~----~~~~~q-i~~ADivViNK~DL~~~~~ 106 (148)
+..+.++.|.|..-... + ....+|.++.|+|+..+.... ...... .+ -++|+||+|+.+.-.
T Consensus 49 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p--~ilv~NK~Dl~~~~~ 126 (271)
T 3k53_A 49 EKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKN--IILVLNKFDLLKKKG 126 (271)
T ss_dssp TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCS--EEEEEECHHHHHHHT
T ss_pred CceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCC--EEEEEEChhcCcccc
Confidence 34578899999642100 1 013579999999998753311 111111 44 699999999865400
Q ss_pred --hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 107 --ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 107 --~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+.+.+.+.+ +.|++++||++|.|++++++++.-
T Consensus 127 ~~~~~~~l~~~l-----g~~~~~~Sa~~g~gi~~l~~~i~~ 162 (271)
T 3k53_A 127 AKIDIKKMRKEL-----GVPVIPTNAKKGEGVEELKRMIAL 162 (271)
T ss_dssp CCCCHHHHHHHH-----SSCEEECBGGGTBTHHHHHHHHHH
T ss_pred cHHHHHHHHHHc-----CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 1223333333 268999999999999999998764
No 119
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.75 E-value=7.5e-06 Score=57.11 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=59.6
Q ss_pred CCCEEEEecCCceeee----ee------ccccCceEEEEEeCCCCCCcc-----c-cCCCCcceeeEEEEecCCCCCchh
Q 032030 43 KADLLLCESGGDNLAA----NF------SRELADYIIYIIDVSGGDKIP-----R-KGGPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~----~~------~~~~~d~~i~vvDa~~~~~~~-----~-~~~~qi~~ADivViNK~DL~~~~~ 106 (148)
+..+.+++|.|..... .+ .-..+|.+++++|+....... . ......+ -++|+||+|+.+.
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl~~~-- 123 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP--VILVATKVDDPKH-- 123 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC--EEEEEECCCSGGG--
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC--EEEEEECcccccc--
Confidence 3467788888865310 00 113578899999998753211 0 0011334 6999999999865
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 ~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+ .+.+.. +. ...+++++||++|.|++++++++.
T Consensus 124 ~~--~~~~~~-~~-~~~~~~~~Sa~~~~gv~~l~~~l~ 157 (161)
T 2dyk_A 124 EL--YLGPLY-GL-GFGDPIPTSSEHARGLEELLEAIW 157 (161)
T ss_dssp GG--GCGGGG-GG-SSCSCEECBTTTTBSHHHHHHHHH
T ss_pred hH--hHHHHH-hC-CCCCeEEEecccCCChHHHHHHHH
Confidence 31 222222 22 223789999999999999999875
No 120
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.74 E-value=1.6e-05 Score=56.76 Aligned_cols=97 Identities=16% Similarity=0.053 Sum_probs=60.9
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----------cc-CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----------RK-GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----------~~-~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
+.+.++++.|......+. -..+|.+++++|+....... .. ....++ -++|+||+|+.++-....
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl~~~~~~~~ 131 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP--IMLVGNKKDLHMERVISY 131 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC--EEEEEECTTCTTTCCSCH
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECccchhcceecH
Confidence 455677888853211111 13478899999987642210 10 112344 689999999965411223
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+...+..+.. +.+++++||++|.|++++++++.
T Consensus 132 ~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~ 164 (181)
T 3t5g_A 132 EEGKALAESW--NAAFLESSAKENQTAVDVFRRII 164 (181)
T ss_dssp HHHHHHHHHT--TCEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCcEEEEecCCCCCHHHHHHHHH
Confidence 4555556544 46899999999999999998875
No 121
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.71 E-value=2.1e-05 Score=55.99 Aligned_cols=98 Identities=16% Similarity=0.091 Sum_probs=59.4
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc-------c---cCCCCcceeeEEEEecCCCCCchhhh-
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP-------R---KGGPGITQADLLVINKTDLASAIGAD- 108 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~-------~---~~~~qi~~ADivViNK~DL~~~~~~~- 108 (148)
.+.+.++++.|....... .-..+|.+++|+|+....... . ...+.++ -++|+||+|+.+. ..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~ 130 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP--IVLVGTKLDLRDD--KQF 130 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC--EEEEEECHHHHTC--HHH
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEechhhhcC--ccc
Confidence 344557788885321111 113468899999987653210 0 0112344 5899999999765 33
Q ss_pred -----------HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 109 -----------LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 109 -----------l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+...+..+..+ ..+++++||++|.|++++++++.-
T Consensus 131 ~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~ 177 (182)
T 3bwd_D 131 FIDHPGAVPITTVQGEELKKLIG-APAYIECSSKSQENVKGVFDAAIR 177 (182)
T ss_dssp HHHC--CCCCCHHHHHHHHHHHT-CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHcC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 233444444332 248999999999999999998754
No 122
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.71 E-value=5.8e-05 Score=54.74 Aligned_cols=79 Identities=8% Similarity=0.065 Sum_probs=50.8
Q ss_pred cCceEEEEEeCCCCCCcc-------c--cCC--CCcceeeEEEEecCCCCCc--hhhhHHHHHHHHHhcCCCCcEEEEEe
Q 032030 64 LADYIIYIIDVSGGDKIP-------R--KGG--PGITQADLLVINKTDLASA--IGADLAVMERDALRMRDGGPFIFAQV 130 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~-------~--~~~--~qi~~ADivViNK~DL~~~--~~~~l~~~~~~i~~~np~a~vi~tSa 130 (148)
.+|.+++|+|+.....+. . ... ..++ -++|.||+|+.+. -....+...+..+.. ...+++.+||
T Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p--iilv~nK~Dl~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa 161 (184)
T 3ihw_A 85 WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP--MVLVGTQDAISAANPRVIDDSRARKLSTDL-KRCTYYETCA 161 (184)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC--EEEEEECTTCBTTBCCCSCHHHHHHHHHHT-TTCEEEEEBT
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECcccccccccccCHHHHHHHHHHc-CCCeEEEecC
Confidence 368889999987643211 0 011 2233 5899999999421 002223455555443 3468999999
Q ss_pred cCCCCHHHHHHhhhh
Q 032030 131 GWVIGIIFTLSITHY 145 (148)
Q Consensus 131 ~~g~gi~~l~~~~~~ 145 (148)
++|.|++++|+++.-
T Consensus 162 ~~~~gv~~lf~~l~~ 176 (184)
T 3ihw_A 162 TYGLNVERVFQDVAQ 176 (184)
T ss_dssp TTTBTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999998753
No 123
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.70 E-value=6.9e-06 Score=63.81 Aligned_cols=95 Identities=12% Similarity=-0.042 Sum_probs=57.7
Q ss_pred CCCEEEEecCCceee------e----eec------cccCc-eEEEEEeCCCCCCccc-------cCCCCcceeeEEEEec
Q 032030 43 KADLLLCESGGDNLA------A----NFS------RELAD-YIIYIIDVSGGDKIPR-------KGGPGITQADLLVINK 98 (148)
Q Consensus 43 ~~D~IliEtsG~~~~------~----~~~------~~~~d-~~i~vvDa~~~~~~~~-------~~~~qi~~ADivViNK 98 (148)
.+++.|+.|.|.... . .+. -...+ .+++|+|+........ ..+...+ -++|+||
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~--~i~V~NK 201 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQR--TIGVITK 201 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSS--EEEEEEC
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCe--EEEEEEc
Confidence 379999999997421 1 110 01234 4457899876532111 1112233 6999999
Q ss_pred CCCCCchhhhHHHHHHHHHhc-C----CCCcEEEEEecCCCCHHHHHHhh
Q 032030 99 TDLASAIGADLAVMERDALRM-R----DGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 99 ~DL~~~~~~~l~~~~~~i~~~-n----p~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
+|+.++ .. ...+.++.. . +..+++++||++|.|++++++++
T Consensus 202 ~Dl~~~--~~--~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l 247 (299)
T 2aka_B 202 LDLMDE--GT--DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAAL 247 (299)
T ss_dssp GGGSCT--TC--CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHH
T ss_pred cccCCC--Cc--hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHH
Confidence 999875 33 112223321 1 23578999999999999998875
No 124
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.70 E-value=4.8e-05 Score=55.01 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=59.1
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc---c-c------cCCCCcceeeEEEEecCCCCCchhhh--
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI---P-R------KGGPGITQADLLVINKTDLASAIGAD-- 108 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~---~-~------~~~~qi~~ADivViNK~DL~~~~~~~-- 108 (148)
+.+.++++.|......+. -..+|.+++|+|+.....+ . . ...+.++ -++|+||+|+.+. ..
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~~ 141 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP--FLLIGTQIDLRDD--PKTL 141 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC--EEEEEECTTSTTC--HHHH
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEEChhhccc--ccch
Confidence 344566666643111111 1246889999998765321 1 0 0112344 5999999999874 21
Q ss_pred ------------HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 109 ------------LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 109 ------------l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+...+..+..+ ..+++++||++|.|++++++++.-
T Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~ 189 (194)
T 2atx_A 142 ARLNDMKEKPICVEQGQKLAKEIG-ACCYVECSALTQKGLKTVFDEAII 189 (194)
T ss_dssp HHHTTTTCCCCCHHHHHHHHHHHT-CSCEEECCTTTCTTHHHHHHHHHH
T ss_pred hhcccccCcccCHHHHHHHHHHcC-CcEEEEeeCCCCCCHHHHHHHHHH
Confidence 233444444432 238999999999999999998753
No 125
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.70 E-value=2e-05 Score=55.12 Aligned_cols=99 Identities=16% Similarity=0.089 Sum_probs=62.2
Q ss_pred CCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc---cc------CCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 43 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP---RK------GGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~---~~------~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
.+.+.++++.|....... .-..+|.+++++|+....... .. .....+ -++|+||+|+.++-....+
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p--iilv~nK~Dl~~~~~~~~~ 130 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP--TALVQNKIDLLDDSCIKNE 130 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC--EEEEEECGGGGGGCSSCHH
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--EEEEEECcccCcccccCHH
Confidence 346777788884321111 113578899999987653211 00 012334 6899999999763001234
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+.+..++.+ .+++++||++|.|++++++++.-
T Consensus 131 ~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~ 163 (168)
T 1z2a_A 131 EAEGLAKRLK--LRFYRTSVKEDLNVSEVFKYLAE 163 (168)
T ss_dssp HHHHHHHHHT--CEEEECBTTTTBSSHHHHHHHHH
T ss_pred HHHHHHHHcC--CeEEEEecCCCCCHHHHHHHHHH
Confidence 4555555433 58999999999999999998753
No 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.69 E-value=3.2e-05 Score=62.40 Aligned_cols=75 Identities=25% Similarity=0.167 Sum_probs=54.3
Q ss_pred cCceEEEEEeCCCCC--Cccc---cC------CCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecC
Q 032030 64 LADYIIYIIDVSGGD--KIPR---KG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~--~~~~---~~------~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~ 132 (148)
.+|.+++|+|+.... .... .. ....+ -++|+||+|+.+. .+++...+.++. ...+++++||++
T Consensus 246 ~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p--iilV~NK~Dl~~~--~~~~~~~~~~~~--~~~~~~~iSA~~ 319 (357)
T 2e87_A 246 LGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP--FLVVINKIDVADE--ENIKRLEKFVKE--KGLNPIKISALK 319 (357)
T ss_dssp TCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC--EEEEECCTTTCCH--HHHHHHHHHHHH--TTCCCEECBTTT
T ss_pred cCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC--EEEEEECcccCCh--HHHHHHHHHHHh--cCCCeEEEeCCC
Confidence 478899999987653 2110 00 01333 6899999999987 666666666654 346899999999
Q ss_pred CCCHHHHHHhhh
Q 032030 133 VIGIIFTLSITH 144 (148)
Q Consensus 133 g~gi~~l~~~~~ 144 (148)
|.|+++|++++.
T Consensus 320 g~gi~~l~~~i~ 331 (357)
T 2e87_A 320 GTGIDLVKEEII 331 (357)
T ss_dssp TBTHHHHHHHHH
T ss_pred CcCHHHHHHHHH
Confidence 999999998875
No 127
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.69 E-value=5.4e-05 Score=64.68 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=38.3
Q ss_pred CCCEEEEecCCceee--eee-ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNLA--ANF-SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--~~~-~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~ 104 (148)
+..+.++.|.|.... ... .-..+|..++|+|+..+...+. .....++ -++|+||+|+.+.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iP--iivviNK~Dl~~~ 149 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTP--IMTFINKMDRDTR 149 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCC--EEEEEECTTSCCS
T ss_pred CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC--EEEEEeCCCCccc
Confidence 456788889886421 110 1135799999999988754211 1122344 6899999999765
No 128
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.68 E-value=5.4e-05 Score=61.82 Aligned_cols=96 Identities=6% Similarity=0.043 Sum_probs=59.7
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccc------cCCCCcceee-EEEEe-cCCCCCchhhhHHH
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQAD-LLVIN-KTDLASAIGADLAV 111 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~AD-ivViN-K~DL~~~~~~~l~~ 111 (148)
+..+.++.|.|-... ... .-..+|..+.|+| ..+..-+. .....++ . ++++| |+|+ ++ ...+.
T Consensus 59 ~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~--~~ivvvNNK~Dl-~~--~~~~~ 132 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFK--HGIIALTRSDST-HM--HAIDE 132 (370)
T ss_dssp SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCC--EEEEEECCGGGS-CH--HHHHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCC--eEEEEEEeccCC-CH--HHHHH
Confidence 345777777775321 000 1135799999999 66533110 0011233 4 89999 9999 76 54444
Q ss_pred HHHHHH----hcC-CCCcEEE--EEecC---CCCHHHHHHhhh
Q 032030 112 MERDAL----RMR-DGGPFIF--AQVGW---VIGIIFTLSITH 144 (148)
Q Consensus 112 ~~~~i~----~~n-p~a~vi~--tSa~~---g~gi~~l~~~~~ 144 (148)
+.+.++ ... ...|+++ +||++ |.|+++|++.+.
T Consensus 133 ~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~ 175 (370)
T 2elf_A 133 LKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARIN 175 (370)
T ss_dssp HHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHH
Confidence 333343 332 3479999 99999 999999998764
No 129
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.68 E-value=1.1e-05 Score=58.09 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=48.0
Q ss_pred cCceEEEEEeCCCCCCccc---------cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 032030 64 LADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI 134 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~---------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~ 134 (148)
.+|.+++|+|+........ .....++ -++|+||+|+.+. .. +..+ ....+++++||++|.
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p--~ilv~NK~Dl~~~--~~-----~~~~--~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP--ITVVRNKADITGE--TL-----GMSE--VNGHALIRLSARTGE 151 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCC--EEEEEECHHHHCC--CC-----EEEE--ETTEEEEECCTTTCT
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCC--EEEEEECccCCcc--hh-----hhhh--ccCCceEEEeCCCCC
Confidence 5788999999976543210 1112344 5999999999654 21 0011 134689999999999
Q ss_pred CHHHHHHhhhh
Q 032030 135 GIIFTLSITHY 145 (148)
Q Consensus 135 gi~~l~~~~~~ 145 (148)
|++++++++.-
T Consensus 152 gv~~l~~~l~~ 162 (172)
T 2gj8_A 152 GVDVLRNHLKQ 162 (172)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999998754
No 130
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.67 E-value=9.2e-05 Score=60.36 Aligned_cols=77 Identities=17% Similarity=0.082 Sum_probs=49.6
Q ss_pred cCceEEEEEeCCCCCCc--cc--cCCCCcceeeEEEEecCCCCCchhh-hHHHHHHH----HHhcC-CCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKI--PR--KGGPGITQADLLVINKTDLASAIGA-DLAVMERD----ALRMR-DGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~--~~--~~~~qi~~ADivViNK~DL~~~~~~-~l~~~~~~----i~~~n-p~a~vi~tSa~~g 133 (148)
..+.++.|+|+.+.+.. +. .+....+ -++|+||+||.+. . ..+++.++ .++.. +..+++.+||++|
T Consensus 69 ~~~~il~VvD~~d~~~~~~~~l~~~~~~~p--~ilV~NK~DL~~~--~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g 144 (368)
T 3h2y_A 69 SDALVVKIVDIFDFNGSWLPGLHRFVGNNK--VLLVGNKADLIPK--SVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKG 144 (368)
T ss_dssp SCCEEEEEEETTSHHHHCCTTHHHHSSSSC--EEEEEECGGGSCT--TSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTC
T ss_pred cCcEEEEEEECCCCcccHHHHHHHHhCCCc--EEEEEEChhcCCc--ccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCC
Confidence 45688999999764321 11 1111333 5899999999875 3 12333333 33322 2237999999999
Q ss_pred CCHHHHHHhhh
Q 032030 134 IGIIFTLSITH 144 (148)
Q Consensus 134 ~gi~~l~~~~~ 144 (148)
.|+++|++.+.
T Consensus 145 ~gi~~L~~~l~ 155 (368)
T 3h2y_A 145 QGIAELADAIE 155 (368)
T ss_dssp TTHHHHHHHHH
T ss_pred cCHHHHHhhhh
Confidence 99999998874
No 131
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.67 E-value=4.9e-05 Score=54.88 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=58.4
Q ss_pred CEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCc---c-------ccC--CCCcceeeEEEEecCCCCCchhhhH
Q 032030 45 DLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKI---P-------RKG--GPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 45 D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~---~-------~~~--~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
.+.++.|.|........ -..+|.+++|+|+...... . ... ...++ -++|+||+|+.+.. ...
T Consensus 57 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p--iilv~nK~Dl~~~~-~~~ 133 (199)
T 2gf0_A 57 TLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP--VMLVGNKCDETQRE-VDT 133 (199)
T ss_dssp EEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC--EEEEEECTTCSSCS-SCH
T ss_pred EEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC--EEEEEECccCCccc-cCH
Confidence 45666777743111110 1246888999998764221 0 000 11334 59999999997640 122
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+...+..+..+ .+++++||++|.|++++++++.-
T Consensus 134 ~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 167 (199)
T 2gf0_A 134 REAQAVAQEWK--CAFMETSAKMNYNVKELFQELLT 167 (199)
T ss_dssp HHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHH
Confidence 33444444433 58999999999999999998764
No 132
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.66 E-value=9.1e-05 Score=60.36 Aligned_cols=77 Identities=18% Similarity=0.106 Sum_probs=50.1
Q ss_pred cCceEEEEEeCCCCCCc--cc--cCCCCcceeeEEEEecCCCCCchhhh-HHHHHHH----HHhcCC-CCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKI--PR--KGGPGITQADLLVINKTDLASAIGAD-LAVMERD----ALRMRD-GGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~--~~--~~~~qi~~ADivViNK~DL~~~~~~~-l~~~~~~----i~~~np-~a~vi~tSa~~g 133 (148)
..+.++.|+|+...+.. +. .+-...+ -++|+||+||.+. .. .+++.++ .++..- ..+++.+||++|
T Consensus 71 ~~~lil~VvD~~d~~~s~~~~l~~~l~~~p--iilV~NK~DLl~~--~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g 146 (369)
T 3ec1_A 71 SKALVVNIVDIFDFNGSFIPGLPRFAADNP--ILLVGNKADLLPR--SVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKG 146 (369)
T ss_dssp HCCEEEEEEETTCSGGGCCSSHHHHCTTSC--EEEEEECGGGSCT--TCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTT
T ss_pred cCcEEEEEEECCCCCCchhhHHHHHhCCCC--EEEEEEChhcCCC--ccCHHHHHHHHHHHHHHcCCCcccEEEEECCCC
Confidence 35788999999876531 11 0111233 5889999999875 31 2333333 343322 247899999999
Q ss_pred CCHHHHHHhhh
Q 032030 134 IGIIFTLSITH 144 (148)
Q Consensus 134 ~gi~~l~~~~~ 144 (148)
.|+++|++.+.
T Consensus 147 ~gi~~L~~~I~ 157 (369)
T 3ec1_A 147 IGMAKVMEAIN 157 (369)
T ss_dssp BTHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998773
No 133
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.66 E-value=4.2e-05 Score=63.71 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=56.0
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCC---------cccc----CCCCcceeeEEEEecCCCCCc--h
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDK---------IPRK----GGPGITQADLLVINKTDLASA--I 105 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~---------~~~~----~~~qi~~ADivViNK~DL~~~--~ 105 (148)
..+.|+.|.|-... ... .-..+|..++|+|+..+.. .... ....++. -++++||+|+.+. .
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~-iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH-LIVLINKMDDPTVNWS 173 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCe-EEEEeecCCCcccchH
Confidence 45677777774311 000 1135799999999988742 1000 0111220 3789999999642 0
Q ss_pred hhhHHH----HHHHHHhcC----CCCcEEEEEecCCCCHHHHHH
Q 032030 106 GADLAV----MERDALRMR----DGGPFIFAQVGWVIGIIFTLS 141 (148)
Q Consensus 106 ~~~l~~----~~~~i~~~n----p~a~vi~tSa~~g~gi~~l~~ 141 (148)
....+. +.+.+++.. ...+++++||++|.|++++.+
T Consensus 174 ~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 174 NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 022333 333343332 257899999999999998544
No 134
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.65 E-value=1.5e-05 Score=66.94 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=55.2
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCc-------ccc-C---CCCcce-eeEEEEecCCCCCchhh
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKI-------PRK-G---GPGITQ-ADLLVINKTDLASAIGA 107 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~-------~~~-~---~~qi~~-ADivViNK~DL~~~~~~ 107 (148)
+..+.|+.|.|.... ... .-..+|.+++|+|+..+... +.. . ...+.. --++|+||+|+.+.-..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH
Confidence 456788888886321 000 11358999999999886311 000 0 000111 14789999999873113
Q ss_pred hHHHHHHHHHh----cC---CCCcEEEEEecCCCCHHH
Q 032030 108 DLAVMERDALR----MR---DGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 108 ~l~~~~~~i~~----~n---p~a~vi~tSa~~g~gi~~ 138 (148)
..+.+.+.+++ .. +..+++++||++|.|+++
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 34444444432 22 257899999999999975
No 135
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.64 E-value=5.5e-05 Score=56.11 Aligned_cols=77 Identities=13% Similarity=0.046 Sum_probs=51.2
Q ss_pred cCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchhhhH--------------HHHHHHHHhc
Q 032030 64 LADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIGADL--------------AVMERDALRM 119 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~~~l--------------~~~~~~i~~~ 119 (148)
.+|.+++|+|+.....+.. ...+.++ -++|+||+|+.+. ... +...+..+..
T Consensus 105 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~ 180 (214)
T 2j1l_A 105 DASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP--IIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYHRGQEMARSV 180 (214)
T ss_dssp CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC--EEEEEECGGGGSC--HHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEEChhhhcc--chhhhhhcccccCcccHHHHHHHHHhc
Confidence 4688899999876532110 0112344 5899999999876 432 2233444433
Q ss_pred CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 120 RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 120 np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+++++||++|.|++++++++.-
T Consensus 181 -~~~~~~~~SA~~g~gi~el~~~l~~ 205 (214)
T 2j1l_A 181 -GAVAYLECSARLHDNVHAVFQEAAE 205 (214)
T ss_dssp -TCSEEEECBTTTTBSHHHHHHHHHH
T ss_pred -CCCEEEEecCCCCCCHHHHHHHHHH
Confidence 2348999999999999999998753
No 136
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.62 E-value=2.2e-05 Score=57.48 Aligned_cols=77 Identities=16% Similarity=0.109 Sum_probs=47.2
Q ss_pred CceEEEEEeCCCCCCc----------ccc-CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 032030 65 ADYIIYIIDVSGGDKI----------PRK-GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 65 ~d~~i~vvDa~~~~~~----------~~~-~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
+|..+.|.|......+ ... .....+ -++|.||+|+.+.-.-..+......... +.+++++||++|
T Consensus 81 ~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p--iilV~NK~Dl~~~r~v~~~~~~~~a~~~--~~~~~e~SA~~g 156 (192)
T 2cjw_A 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP--IILVGNKSDLVRXREVSVSEGRAXAVVF--DXKFIETSAAVQ 156 (192)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC--EEEEEECTTCGGGCCSCHHHHHHHHHHT--TCEEEECBTTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe--EEEEEechhhhccccccHHHHHHHHHHh--CCceEEeccccC
Confidence 5777888887653211 000 112344 5899999999753001122222222322 368999999999
Q ss_pred CCHHHHHHhhhh
Q 032030 134 IGIIFTLSITHY 145 (148)
Q Consensus 134 ~gi~~l~~~~~~ 145 (148)
.|++++|++++-
T Consensus 157 ~~v~~lf~~l~~ 168 (192)
T 2cjw_A 157 HNVKELFEGIVR 168 (192)
T ss_dssp BSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999998753
No 137
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.61 E-value=3.7e-05 Score=63.05 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=62.4
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCcccc------CCCCcceee-EEEEecCCCCCchhhhH---
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPRK------GGPGITQAD-LLVINKTDLASAIGADL--- 109 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~~------~~~qi~~AD-ivViNK~DL~~~~~~~l--- 109 (148)
+..+.++.|.|-... ... .-..+|..++|+|+.++...+.. ....++ . ++++||+|+.+.. ..+
T Consensus 65 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp--~iivviNK~Dl~~~~-~~~~~~ 141 (397)
T 1d2e_A 65 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE--HVVVYVNKADAVQDS-EMVELV 141 (397)
T ss_dssp SCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC--CEEEEEECGGGCSCH-HHHHHH
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC--eEEEEEECcccCCCH-HHHHHH
Confidence 467888999886321 011 11357999999999887532110 011223 3 6899999998530 222
Q ss_pred -HHHHHHHHhcCC---CCcEEEEEecCCCC----------HHHHHHhhh
Q 032030 110 -AVMERDALRMRD---GGPFIFAQVGWVIG----------IIFTLSITH 144 (148)
Q Consensus 110 -~~~~~~i~~~np---~a~vi~tSa~~g~g----------i~~l~~~~~ 144 (148)
+++.+.+++..- ..+++++||++|.| +++|++.+.
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~ 190 (397)
T 1d2e_A 142 ELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVD 190 (397)
T ss_dssp HHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHH
Confidence 244555554431 47999999999764 889988774
No 138
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.61 E-value=6.3e-05 Score=54.50 Aligned_cols=78 Identities=14% Similarity=0.015 Sum_probs=51.1
Q ss_pred cCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCc--hhhhHHHHHHHHHhcCCCCcEEEEEec
Q 032030 64 LADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASA--IGADLAVMERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~--~~~~l~~~~~~i~~~np~a~vi~tSa~ 131 (148)
.+|.+++|+|+........ ...+.++ -++|+||+|+.++ .....+...+..+..+ ..+++++||+
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 170 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK--TVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG-CVAYIEASSV 170 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE--EEEEEECGGGCCTTTTCCCHHHHHHHHHHHT-CSCEEECBTT
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEEChhhccCCCCcccHHHHHHHHHhcC-CCEEEEeecC
Confidence 4688999999876532110 1112344 5899999999752 0022344555555433 2239999999
Q ss_pred CCCCHHHHHHhhh
Q 032030 132 WVIGIIFTLSITH 144 (148)
Q Consensus 132 ~g~gi~~l~~~~~ 144 (148)
+|.|++++++++.
T Consensus 171 ~~~gi~~l~~~l~ 183 (194)
T 3reg_A 171 AKIGLNEVFEKSV 183 (194)
T ss_dssp TTBSHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 9999999999875
No 139
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.61 E-value=4.2e-05 Score=55.64 Aligned_cols=78 Identities=17% Similarity=0.083 Sum_probs=51.6
Q ss_pred cCceEEEEEeCCCCCCcc----------c-cCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecC
Q 032030 64 LADYIIYIIDVSGGDKIP----------R-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~----------~-~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~ 132 (148)
.+|.+++|+|+.....+. . .....++ -++|+||+|+.+.-....+...+..+.. +.+++++||++
T Consensus 98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p--iilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 173 (196)
T 2atv_A 98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT--LILVGNKADLDHSRQVSTEEGEKLATEL--ACAFYECSACT 173 (196)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC--EEEEEECGGGGGGCCSCHHHHHHHHHHH--TSEEEECCTTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc--EEEEEECcccccccccCHHHHHHHHHHh--CCeEEEECCCc
Confidence 368889999987642210 0 0112344 5899999999763111223444555544 36899999999
Q ss_pred CC-CHHHHHHhhhh
Q 032030 133 VI-GIIFTLSITHY 145 (148)
Q Consensus 133 g~-gi~~l~~~~~~ 145 (148)
|. |++++++++.-
T Consensus 174 g~~gi~~l~~~l~~ 187 (196)
T 2atv_A 174 GEGNITEIFYELCR 187 (196)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 99 99999998753
No 140
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.60 E-value=3.8e-05 Score=56.54 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=58.7
Q ss_pred CEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchhhhH--
Q 032030 45 DLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIGADL-- 109 (148)
Q Consensus 45 D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~~~l-- 109 (148)
.+.+++|.|.-...... -..+|.+++|+|+........ ...+..+ -++|+||+|+.+. ...
T Consensus 79 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~~~ 154 (204)
T 4gzl_A 79 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP--IILVGTKLDLRDD--KDTIE 154 (204)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC--EEEEEECHHHHTC--HHHHH
T ss_pred EEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEechhhccc--hhhhh
Confidence 34466777752111111 135688999999876532110 0112344 6899999999876 331
Q ss_pred ------------HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 ------------AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 ------------~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+...+..+. ....+++++||++|.|++++++++.-
T Consensus 155 ~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 155 KLKEKKLTPITYPQGLAMAKE-IGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp HHHHTTCCCCCHHHHHHHHHH-TTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred hhhccccccccHHHHHHHHHh-cCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 223333333 33457999999999999999998753
No 141
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.60 E-value=3.6e-05 Score=54.81 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=59.4
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc-------c---cCCCCcceeeEEEEecCCCCCchhhh--
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP-------R---KGGPGITQADLLVINKTDLASAIGAD-- 108 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~-------~---~~~~qi~~ADivViNK~DL~~~~~~~-- 108 (148)
+.+.++.+.|....... .-..+|.+++|+|+....... . ...+..+ -++|+||+|+.+. ..
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~~ 128 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP--IILVGTKLDLRDD--KDTI 128 (186)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC--EEEEEECHHHHTC--HHHH
T ss_pred EEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC--EEEEeEccccccc--chhh
Confidence 44557777775321111 113578899999987643211 0 0112344 5899999999765 32
Q ss_pred ------------HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 109 ------------LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 109 ------------l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+...+..+.. ...+++++||++|.|++++++++.-
T Consensus 129 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~ 176 (186)
T 1mh1_A 129 EKLKEKKLTPITYPQGLAMAKEI-GAVKYLECSALTQRGLKTVFDEAIR 176 (186)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred hhhcccccccCCHHHHHHHHHhc-CCcEEEEecCCCccCHHHHHHHHHH
Confidence 12233333332 2248999999999999999998754
No 142
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.57 E-value=9.6e-06 Score=63.58 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=60.4
Q ss_pred CCCEEEEecCCceee----------eeec-cccCceEEEEEeCCCCCCcc----ccCCCCcceeeEEEEecCCCCCch--
Q 032030 43 KADLLLCESGGDNLA----------ANFS-RELADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLASAI-- 105 (148)
Q Consensus 43 ~~D~IliEtsG~~~~----------~~~~-~~~~d~~i~vvDa~~~~~~~----~~~~~qi~~ADivViNK~DL~~~~-- 105 (148)
+..+.++.|.|.--. ..+. ....|.++.|+|+...+... ......++ -++|+||+|+....
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p--~ilv~NK~Dl~~~~~~ 125 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIP--VTIALNMIDVLDGQGK 125 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSC--EEEEEECHHHHHHTTC
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCC--EEEEEEChhhCCcCCc
Confidence 457888899886311 0111 12478999999987643211 11112334 69999999986430
Q ss_pred hhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 106 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 106 ~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
..+.+++.+.+ +.|++++||++|.|++++++++.-
T Consensus 126 ~~~~~~l~~~l-----g~~vi~~SA~~g~gi~el~~~i~~ 160 (272)
T 3b1v_A 126 KINVDKLSYHL-----GVPVVATSALKQTGVDQVVKKAAH 160 (272)
T ss_dssp CCCHHHHHHHH-----TSCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCCEEEEEccCCCCHHHHHHHHHH
Confidence 01223333332 358999999999999999998753
No 143
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.57 E-value=6.3e-05 Score=61.68 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=61.8
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCcccc------CCCCcceeeEEEEecCCCCCchhhhHH---
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPRK------GGPGITQADLLVINKTDLASAIGADLA--- 110 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~~------~~~qi~~ADivViNK~DL~~~~~~~l~--- 110 (148)
+..+.++.|.|.... ... .-..+|..++|+|+.++...+.. ....++. -++++||+|+.+.. +.++
T Consensus 74 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~-iivviNK~Dl~~~~-~~~~~~~ 151 (405)
T 2c78_A 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPY-IVVFMNKVDMVDDP-ELLDLVE 151 (405)
T ss_dssp SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCC-EEEEEECGGGCCCH-HHHHHHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEEECccccCcH-HHHHHHH
Confidence 467888888886421 000 11357999999999887431110 0112220 26899999998530 2233
Q ss_pred -HHHHHHHhcCC---CCcEEEEEecCCCC------------------HHHHHHhhh
Q 032030 111 -VMERDALRMRD---GGPFIFAQVGWVIG------------------IIFTLSITH 144 (148)
Q Consensus 111 -~~~~~i~~~np---~a~vi~tSa~~g~g------------------i~~l~~~~~ 144 (148)
++.+.+++... ..+++++||++|.| +++|++.+.
T Consensus 152 ~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~ 207 (405)
T 2c78_A 152 MEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAID 207 (405)
T ss_dssp HHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHH
Confidence 34455555442 47999999999987 778877664
No 144
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.57 E-value=7.7e-05 Score=54.37 Aligned_cols=98 Identities=14% Similarity=0.055 Sum_probs=59.7
Q ss_pred CCCEEEEecCCceee--ee----eccccCceEEEEEeCCCCC--Ccc-------cc--CCCCcceeeEEEEecCCCCCch
Q 032030 43 KADLLLCESGGDNLA--AN----FSRELADYIIYIIDVSGGD--KIP-------RK--GGPGITQADLLVINKTDLASAI 105 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--~~----~~~~~~d~~i~vvDa~~~~--~~~-------~~--~~~qi~~ADivViNK~DL~~~~ 105 (148)
...+.++.+.|.-.. .. ..-..+|.+++|+|+.... ... .. ..+.++ -++|.||+||.++
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p--iilv~nK~Dl~~~- 144 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN--FEVFIHKVDGLSD- 144 (196)
T ss_dssp SCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE--EEEEEECGGGSCH-
T ss_pred eeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc--EEEEEeccccCch-
Confidence 466777888885321 00 0012478899999998751 100 00 123444 6899999999874
Q ss_pred hhhH----HHH-----HHHHHhc--CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 106 GADL----AVM-----ERDALRM--RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 106 ~~~l----~~~-----~~~i~~~--np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
... ..+ .+..+.. ..+.+++++||++ .|++++|+.+.-
T Consensus 145 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 145 -DHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHH
T ss_pred -hhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHH
Confidence 321 111 1222211 3456899999999 999999998764
No 145
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.54 E-value=3.9e-05 Score=56.37 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=60.5
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----c------cCCCCcceeeEEEEecCCCCCchhhh--
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----R------KGGPGITQADLLVINKTDLASAIGAD-- 108 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----~------~~~~qi~~ADivViNK~DL~~~~~~~-- 108 (148)
+.+.++++.|.-....+. -..+|.+++|+|+.....+. . ...+.++ -++|+||+|+.+. ..
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~~ 132 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP--IVLVGTKLDLRDD--KGYL 132 (212)
T ss_dssp EEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC--EEEEEECHHHHTC--HHHH
T ss_pred EEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEeCHHhhhC--cccc
Confidence 345666777753211111 13468899999987653211 0 1112344 5899999999765 32
Q ss_pred --------HHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 109 --------LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 109 --------l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+...+..+..+ ..+++++||++|.|++++++++.-
T Consensus 133 ~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~ 176 (212)
T 2j0v_A 133 ADHTNVITSTQGEELRKQIG-AAAYIECSSKTQQNVKAVFDTAIK 176 (212)
T ss_dssp HTCSSCCCHHHHHHHHHHHT-CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHcC-CceEEEccCCCCCCHHHHHHHHHH
Confidence 334444444433 248999999999999999998753
No 146
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.53 E-value=5.8e-06 Score=58.88 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=48.9
Q ss_pred cCceEEEEEeCCCCCCcc----ccCCCCcceeeEEEEecCCCCCchhhhHH-HHHHHHHhcCCCCcEEEEEecCCCCHHH
Q 032030 64 LADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLASAIGADLA-VMERDALRMRDGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~----~~~~~qi~~ADivViNK~DL~~~~~~~l~-~~~~~i~~~np~a~vi~tSa~~g~gi~~ 138 (148)
.+|.++.++|+...+... .......+ -++|.||+|+... .... ...+..+..+ .+++++||++|.|+++
T Consensus 81 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~--~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 81 KPDLVVNIVDATALERNLYLTLQLMEMGAN--LLLALNKMDLAKS--LGIEIDVDKLEKILG--VKVVPLSAAKKMGIEE 154 (165)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHTTCC--EEEEEECHHHHHH--TTCCCCHHHHHHHHT--SCEEECBGGGTBSHHH
T ss_pred CCCEEEEEecCCchhHhHHHHHHHHhcCCC--EEEEEEchHhccc--cChhhHHHHHHHHhC--CCEEEEEcCCCCCHHH
Confidence 568899999987643211 11111233 6899999998643 2110 1222223333 6899999999999999
Q ss_pred HHHhhhh
Q 032030 139 TLSITHY 145 (148)
Q Consensus 139 l~~~~~~ 145 (148)
+++++.-
T Consensus 155 l~~~l~~ 161 (165)
T 2wji_A 155 LKKAISI 161 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 147
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.52 E-value=5.4e-05 Score=55.66 Aligned_cols=97 Identities=20% Similarity=0.209 Sum_probs=57.7
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc-------c---cCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP-------R---KGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~-------~---~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
+.+.+++|.|.-..... .-..+|.+++|+|+.....+. . ...+..+ -++|+||+|+.+. ....
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~~ 148 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP--IILVANKKDLRSD--EHVR 148 (207)
T ss_dssp EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC--EEEEEECGGGGGC--HHHH
T ss_pred EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEEchhhhcc--ccch
Confidence 45566677774211111 113468889999987642210 0 0112344 5899999999765 3221
Q ss_pred --------------HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 --------------VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 --------------~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+..+.. ...+++++||++|.|++++++++.-
T Consensus 149 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~el~~~l~~ 196 (207)
T 2fv8_A 149 TELARMKQEPVRTDDGRAMAVRI-QAYDYLECSAKTKEGVREVFETATR 196 (207)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred hhhhhcccCCCCHHHHHHHHHhc-CCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 122222222 2238999999999999999998753
No 148
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.51 E-value=0.00012 Score=62.67 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=55.1
Q ss_pred cCCCeeeeeccchhhchHHHHHhhhhcCCCEEEEecCCceee------ee--ec------cccCceEEEEEeCCCCCC--
Q 032030 16 TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA------AN--FS------RELADYIIYIIDVSGGDK-- 79 (148)
Q Consensus 16 ~nGcicc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG~~~~------~~--~~------~~~~d~~i~vvDa~~~~~-- 79 (148)
.+||+||++++++ + . .++||+|.|..-. .. |. -..+|.+++|+|+.+..-
T Consensus 140 ~~~~~~~~~~~~l---l-------~----~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~ 205 (550)
T 2qpt_A 140 LNRFMCAQLPNQV---L-------E----SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISD 205 (550)
T ss_dssp CTTEEEEECCCHH---H-------H----HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCH
T ss_pred cccceEEeccccc---c-------C----CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCH
Confidence 3799999997655 1 1 3689999998531 11 11 124699999999976321
Q ss_pred ----ccccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHH
Q 032030 80 ----IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDAL 117 (148)
Q Consensus 80 ----~~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~ 117 (148)
+.... .+.....++|+||+|+.+. .++.++.+.++
T Consensus 206 ~~~~~l~~l-~~~~~pvilVlNK~Dl~~~--~el~~~~~~l~ 244 (550)
T 2qpt_A 206 EFSEAIGAL-RGHEDKIRVVLNKADMVET--QQLMRVYGALM 244 (550)
T ss_dssp HHHHHHHHT-TTCGGGEEEEEECGGGSCH--HHHHHHHHHHH
T ss_pred HHHHHHHHH-HhcCCCEEEEEECCCccCH--HHHHHHHHHhh
Confidence 11111 1223347999999999988 77777666554
No 149
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.51 E-value=0.00013 Score=60.58 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=57.5
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCC-------CCcccc-C---CCCccee-eEEEEecCCCCCch--
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGG-------DKIPRK-G---GPGITQA-DLLVINKTDLASAI-- 105 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~-------~~~~~~-~---~~qi~~A-DivViNK~DL~~~~-- 105 (148)
+..+.++.|.|.... ... .-..+|..++|+|+.++ ...+.. . ..++... -++++||+|+.+..
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 567899999996421 000 12357999999999875 111100 0 0001111 36899999998720
Q ss_pred hhhH----HHHHHHHHhcC--C-CCcEEEEEecCCCCHHH
Q 032030 106 GADL----AVMERDALRMR--D-GGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 106 ~~~l----~~~~~~i~~~n--p-~a~vi~tSa~~g~gi~~ 138 (148)
.+.+ +++.+.++... + ..+++++||++|.|+.+
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 0222 34555555433 2 47899999999999974
No 150
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.50 E-value=1.7e-05 Score=58.94 Aligned_cols=95 Identities=12% Similarity=-0.018 Sum_probs=58.8
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCccc---------cCCCCcceeeEEEEecCCCCCchhhhHHH
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLAV 111 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~~---------~~~~qi~~ADivViNK~DL~~~~~~~l~~ 111 (148)
+.+.++.|.|.-....+. -..+|.+++|+|+........ ...+.++ -++|+||+|+.+. ...+.
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl~~~--~~~~~ 139 (221)
T 3gj0_A 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP--IVLCGNKVDIKDR--KVKAK 139 (221)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC--EEEEEECTTSSSC--SSCGG
T ss_pred EEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--EEEEEECCccccc--cccHH
Confidence 345566666642111110 124788999999886532110 0112344 5899999999875 33223
Q ss_pred HHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 112 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 112 ~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..+..+.. +.+++++||++|.|++++++++.
T Consensus 140 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 170 (221)
T 3gj0_A 140 SIVFHRKK--NLQYYDISAKSNYNFEKPFLWLA 170 (221)
T ss_dssp GCCHHHHH--TCEEEECBGGGTBTTTHHHHHHH
T ss_pred HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHH
Confidence 33334433 36899999999999999998875
No 151
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.50 E-value=0.00014 Score=53.15 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=58.4
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCc-------cc---cCCCCcceeeEEEEecCCCCCchhhhH-
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKI-------PR---KGGPGITQADLLVINKTDLASAIGADL- 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~-------~~---~~~~qi~~ADivViNK~DL~~~~~~~l- 109 (148)
+.+.++++.|......+ .-..+|.+++|+|+.....+ .. ...+..+ -++|+||+|+.+. ...
T Consensus 73 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~~ 148 (201)
T 2gco_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP--IILVGNKKDLRQD--EHTR 148 (201)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC--EEEEEECGGGTTC--HHHH
T ss_pred EEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEecHHhhcC--ccch
Confidence 34566677774211111 11356889999998764221 00 0112344 5899999999875 321
Q ss_pred -------------HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 110 -------------AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 110 -------------~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+...+..+.. ...+++++||++|.|++++++++.-
T Consensus 149 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~i~~ 196 (201)
T 2gco_A 149 RELAKMKQEPVRSEEGRDMANRI-SAFGYLECSAKTKEGVREVFEMATR 196 (201)
T ss_dssp HHHHTTTCCCCCHHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred hhhcccccCcCCHHHHHHHHHhC-CCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 1223333332 2237999999999999999998753
No 152
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.49 E-value=3.9e-05 Score=66.63 Aligned_cols=96 Identities=16% Similarity=0.128 Sum_probs=56.9
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCC---------Cccc----cCCCCcceeeEEEEecCCCCCchh
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGD---------KIPR----KGGPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~---------~~~~----~~~~qi~~ADivViNK~DL~~~~~ 106 (148)
+..+.|+.|.|.... ... .-..+|.+++|+|+..+. .... .....++ --++|+||+|+.+.-.
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~-~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIH-NLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCC-EEEEEEECTTTTTTCH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCC-eEEEEEecccccchhH
Confidence 347889999996421 000 123579999999998641 1000 0001111 1478899999987311
Q ss_pred hhHHHHH----HHHHhcC---CCCcEEEEEecCCCCHHHH
Q 032030 107 ADLAVME----RDALRMR---DGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 107 ~~l~~~~----~~i~~~n---p~a~vi~tSa~~g~gi~~l 139 (148)
...+.+. +.+++.. +..+++++||++|.|++++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 3333333 3333332 2579999999999999854
No 153
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.49 E-value=3.3e-05 Score=65.53 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=58.5
Q ss_pred CCCEEEEecCCceee----eeeccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHH
Q 032030 43 KADLLLCESGGDNLA----ANFSRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVM 112 (148)
Q Consensus 43 ~~D~IliEtsG~~~~----~~~~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~ 112 (148)
+..+.++.+.|.-.. ..+. ..+|.++.|+|+...+.... .+.+..+ -++|+||+|+.+......+.+
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l-~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~p--vilV~NK~Dl~~~~~v~~~~~ 173 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFM-TRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSP--VIVVMNKIDENPSYNIEQKKI 173 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHH-HSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCC--EEEEECCTTTCTTCCCCHHHH
T ss_pred eEEEEEEECCcHHHHHHHHHHHc-cCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCC--EEEEEECCCcccccccCHHHH
Confidence 456777777773211 1111 24788899999876644211 1122344 699999999986511234455
Q ss_pred HHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 113 ERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 113 ~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.+..+..+ .+++++||++|.|++++++++.-
T Consensus 174 ~~~~~~~~--~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 174 NERFPAIE--NRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp HHHCGGGT--TCEEECCC-----CTTHHHHHHH
T ss_pred HHHHHhcC--CceEEEecCcccCHHHHHHHHHH
Confidence 55555443 57999999999999999988753
No 154
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.48 E-value=9e-05 Score=61.39 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=57.8
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCcccc------CCCCcceeeEEEEecCCCCCchhhhH----H
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPRK------GGPGITQADLLVINKTDLASAIGADL----A 110 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~~------~~~qi~~ADivViNK~DL~~~~~~~l----~ 110 (148)
..+.++.|.|-... ... .-..+|..++|+|+.++...+.. ....++ --++|+||+|+.+...+.+ +
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~-~iIvviNK~Dl~~~~~~~~~~i~~ 182 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIK-HIVVAINKMDLNGFDERVFESIKA 182 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEEECTTTTTSCHHHHHHHHH
T ss_pred ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-eEEEEEEcCcCCcccHHHHHHHHH
Confidence 45788888885321 011 11467999999999887431110 001111 1478899999987311333 3
Q ss_pred HHHHHHHhcC---CCCcEEEEEecCCCCHHHH
Q 032030 111 VMERDALRMR---DGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 111 ~~~~~i~~~n---p~a~vi~tSa~~g~gi~~l 139 (148)
.+.+.+++.+ +..+++++||++|.|++++
T Consensus 183 ~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 183 DYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 3444455554 3478999999999999874
No 155
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.47 E-value=4.7e-05 Score=55.22 Aligned_cols=78 Identities=17% Similarity=0.001 Sum_probs=51.5
Q ss_pred cCceEEEEEeCCCCCCccc---c------C----CCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEe
Q 032030 64 LADYIIYIIDVSGGDKIPR---K------G----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV 130 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~---~------~----~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa 130 (148)
.+|.+++|+|+.....+.. . . ...++ -++|.||+|+.+.-....+...+..++.+ .+++.+||
T Consensus 91 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p--iilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~Sa 166 (187)
T 3c5c_A 91 WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP--ALLLGNKLDMAQYRQVTKAEGVALAGRFG--CLFFEVSA 166 (187)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC--EEEEEECGGGGGGCSSCHHHHHHHHHHHT--CEEEECCS
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC--EEEEEECcchhhcCccCHHHHHHHHHHcC--CcEEEEee
Confidence 4688899999875432110 0 0 02344 58999999996531112244555555544 58999999
Q ss_pred -cCCCCHHHHHHhhhh
Q 032030 131 -GWVIGIIFTLSITHY 145 (148)
Q Consensus 131 -~~g~gi~~l~~~~~~ 145 (148)
++|.|++++++++.-
T Consensus 167 ~~~g~gv~~lf~~l~~ 182 (187)
T 3c5c_A 167 CLDFEHVQHVFHEAVR 182 (187)
T ss_dssp SSCSHHHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHH
Confidence 899999999998753
No 156
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.45 E-value=0.00013 Score=59.57 Aligned_cols=78 Identities=18% Similarity=0.094 Sum_probs=51.6
Q ss_pred cCceEEEEEeCCCCC--Cc------c---cc-CCCCcceeeEEEEecCCCCCchhhhH---HHHHHHHHhc-CCCCcEEE
Q 032030 64 LADYIIYIIDVSGGD--KI------P---RK-GGPGITQADLLVINKTDLASAIGADL---AVMERDALRM-RDGGPFIF 127 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~--~~------~---~~-~~~qi~~ADivViNK~DL~~~~~~~l---~~~~~~i~~~-np~a~vi~ 127 (148)
.+|.++.|+|+.+.. .. . .. .....+ -++|.||+|+.+. ... +.+.+..+.+ .+..++++
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p--~ilV~NK~Dl~~~--~~~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKP--ILVTLNKIDKING--DLYKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC--EEEEEECGGGCCS--CHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC--EEEEEECCCCCCc--hHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 568899999987654 11 0 00 012233 6999999999875 321 1222233454 44557899
Q ss_pred EEecCCCCHHHHHHhhhh
Q 032030 128 AQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 128 tSa~~g~gi~~l~~~~~~ 145 (148)
+||++|.|+++|++++.-
T Consensus 333 ~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp CBTTTTBSHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHH
Confidence 999999999999988753
No 157
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.44 E-value=5.8e-05 Score=54.89 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=57.6
Q ss_pred CEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchh-----
Q 032030 45 DLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIG----- 106 (148)
Q Consensus 45 D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~----- 106 (148)
.+.++++.|......+. -..+|.+++|+|+........ ...+.++ -++|+||+|+.+...
T Consensus 69 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl~~~~~~~~~~ 146 (201)
T 2q3h_A 69 RLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP--IILVGTQSDLREDVKVLIEL 146 (201)
T ss_dssp EEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSC--EEEEEECGGGGGCHHHHHHH
T ss_pred EEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEECHhhhhchhhhhhh
Confidence 34466666643211111 134688999999876532110 0112344 589999999975300
Q ss_pred -------hhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 107 -------ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 107 -------~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
...+...+..+.. ...+++++||++|.|++++++++.
T Consensus 147 ~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~ 190 (201)
T 2q3h_A 147 DKCKEKPVPEEAAKLLAEEI-KAASYIECSALTQKNLKEVFDAAI 190 (201)
T ss_dssp HTTTCCCCCHHHHHHHHHHH-TCSEEEECCTTTCTTHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHhc-CCcEEEEEecCCCCCHHHHHHHHH
Confidence 1122344444433 234899999999999999999875
No 158
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.43 E-value=2e-05 Score=65.69 Aligned_cols=95 Identities=14% Similarity=-0.025 Sum_probs=59.4
Q ss_pred CEEEEecCCceeeeee----------ccccCceEEEEEeCCCCCCcc---c-cCCCCcceeeEEEEecCCCCCchhhhHH
Q 032030 45 DLLLCESGGDNLAANF----------SRELADYIIYIIDVSGGDKIP---R-KGGPGITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 45 D~IliEtsG~~~~~~~----------~~~~~d~~i~vvDa~~~~~~~---~-~~~~qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
.+.++.|.|....... .-..+|.+++|+|+....... . .....++ -++|+||+|+.+. ...+
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~p--iIvV~NK~Dl~~~--~~~~ 159 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIP--FVVVVNKIDVLGE--KAEE 159 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCC--EEEECCCCTTTTC--CCTH
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCC--EEEEEeCcCCCCc--cHHH
Confidence 5778888886421100 012478899999982221110 0 1111344 6999999999887 5432
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.. +.+.+ .-+.+++++||++|.|++++++++.-
T Consensus 160 ~~-~~l~~-~~g~~v~~vSAktg~gI~eL~~~L~~ 192 (423)
T 3qq5_A 160 LK-GLYES-RYEAKVLLVSALQKKGFDDIGKTISE 192 (423)
T ss_dssp HH-HHSSC-CTTCCCCCCSSCCTTSTTTHHHHHHH
T ss_pred HH-HHHHH-HcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 22 22322 22468999999999999999998753
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.39 E-value=1.2e-05 Score=68.94 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=60.0
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhH-HHHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADL-AVME 113 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l-~~~~ 113 (148)
..+.|+.|.|-...... .-..+|.+++|+|+..+...+. .....++ -++++||+|+.+.-.... +.+.
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP--iIVViNKiDl~~~~~~~v~~~l~ 129 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP--IVLAINKCDKAEADPEKVKKELL 129 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC--EEECCBSGGGTTTSCCSSSSHHH
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc--EEEEEecccccccchHHHHHHHH
Confidence 35778888885321111 1135788899999988643211 1122445 589999999975300111 1111
Q ss_pred HH---HHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 114 RD---ALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 114 ~~---i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+. ...+....+++++||++|.|+++|++++.
T Consensus 130 ~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~ 163 (537)
T 3izy_P 130 AYDVVCEDYGGDVQAVHVSALTGENMMALAEATI 163 (537)
T ss_dssp HTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHH
T ss_pred hhhhhHHhcCCCceEEEEECCCCCCchhHHHHHH
Confidence 11 11222346899999999999999998875
No 160
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.35 E-value=0.00017 Score=63.33 Aligned_cols=97 Identities=12% Similarity=0.073 Sum_probs=61.3
Q ss_pred CCEEEEecCCceeeeee------ccccCceEEEEEeCCCCCCc------cc-cCCCCcceeeEEEEecCCCCCchhh---
Q 032030 44 ADLLLCESGGDNLAANF------SRELADYIIYIIDVSGGDKI------PR-KGGPGITQADLLVINKTDLASAIGA--- 107 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~------~~~~~d~~i~vvDa~~~~~~------~~-~~~~qi~~ADivViNK~DL~~~~~~--- 107 (148)
.++.+|.|.|....... .-..+|.+++|+|+..+... .. ......+ .++|+||+|+.+. .
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~--iiiVlNK~Dl~~~--~~~~ 249 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT--VFFLVNAWDQVRE--SLID 249 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC--EEEEEECGGGGGG--GCSS
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC--EEEEEECcccccc--cccC
Confidence 57999999997431100 01357999999999776431 11 1111233 6999999999754 2
Q ss_pred -----hHHH----HHHH----HHhc-------CCCCcEEEEEec--------------CCCCHHHHHHhhh
Q 032030 108 -----DLAV----MERD----ALRM-------RDGGPFIFAQVG--------------WVIGIIFTLSITH 144 (148)
Q Consensus 108 -----~l~~----~~~~----i~~~-------np~a~vi~tSa~--------------~g~gi~~l~~~~~ 144 (148)
+++. +.+. +... ....+++++||+ +|.|++++++.+.
T Consensus 250 ~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~ 320 (695)
T 2j69_A 250 PDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLN 320 (695)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHH
Confidence 2222 2221 2221 123589999999 9999999988764
No 161
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.29 E-value=0.00011 Score=60.79 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=58.4
Q ss_pred CCEEEEecCCcee------eeee------ccccCceEEEEEeCCCCCCcc-----cc-CCCCcceeeEEEEecCCCCCch
Q 032030 44 ADLLLCESGGDNL------AANF------SRELADYIIYIIDVSGGDKIP-----RK-GGPGITQADLLVINKTDLASAI 105 (148)
Q Consensus 44 ~D~IliEtsG~~~------~~~~------~~~~~d~~i~vvDa~~~~~~~-----~~-~~~qi~~ADivViNK~DL~~~~ 105 (148)
..+.++.|.|.-. ...+ .-..+|.+++|+|+..+.... .. .....+ -++|+||+|+.+.
T Consensus 49 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p--~ilv~NK~D~~~~- 125 (439)
T 1mky_A 49 KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVD--TILVANKAENLRE- 125 (439)
T ss_dssp EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCC--EEEEEESCCSHHH-
T ss_pred eEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC--EEEEEeCCCCccc-
Confidence 4577899999531 1111 114679999999998764311 10 011233 5899999998532
Q ss_pred hhhHHHH-HHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 106 GADLAVM-ERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 106 ~~~l~~~-~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+ ... .+.. ++ ...+++++||++|.|+++|++++.
T Consensus 126 -~~-~~~~~~~~-~l-g~~~~~~iSA~~g~gv~~L~~~i~ 161 (439)
T 1mky_A 126 -FE-REVKPELY-SL-GFGEPIPVSAEHNINLDTMLETII 161 (439)
T ss_dssp -HH-HHTHHHHG-GG-SSCSCEECBTTTTBSHHHHHHHHH
T ss_pred -cH-HHHHHHHH-hc-CCCCEEEEeccCCCCHHHHHHHHH
Confidence 11 222 3332 22 223679999999999999999874
No 162
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.28 E-value=9.8e-05 Score=61.15 Aligned_cols=94 Identities=18% Similarity=0.142 Sum_probs=53.9
Q ss_pred CCCEEEEecCCceee-----eee------ccccCceEEEEEeCCCCCCc-----cc-cCCCCcceeeEEEEecCCCCCch
Q 032030 43 KADLLLCESGGDNLA-----ANF------SRELADYIIYIIDVSGGDKI-----PR-KGGPGITQADLLVINKTDLASAI 105 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-----~~~------~~~~~d~~i~vvDa~~~~~~-----~~-~~~~qi~~ADivViNK~DL~~~~ 105 (148)
+..+.++.|.|.... ..+ .-..+|.+++|+|+..+... .. ......+ -++|+||+|+.+.
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~p--vilv~NK~D~~~~- 126 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKP--VVLAVNKLDNTEM- 126 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSC--EEEEEECCCC----
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC--EEEEEECccCccc-
Confidence 467889999997411 011 01357999999999876431 11 1122344 6999999999764
Q ss_pred hhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 106 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 106 ~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.. ...+.. ++. ..+++++||++|.|+++|++++.
T Consensus 127 -~~--~~~~~~-~lg-~~~~~~iSA~~g~gv~~L~~~i~ 160 (436)
T 2hjg_A 127 -RA--NIYDFY-SLG-FGEPYPISGTHGLGLGDLLDAVA 160 (436)
T ss_dssp -----CCCSSG-GGS-SCCCEECBTTTTBTHHHHHHHHH
T ss_pred -hh--hHHHHH-HcC-CCCeEEEeCcCCCChHHHHHHHH
Confidence 21 111222 222 23679999999999999999874
No 163
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.26 E-value=0.00022 Score=59.81 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=53.9
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCC---------Ccccc----CCCCcceeeEEEEecCCCCCc--h
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGD---------KIPRK----GGPGITQADLLVINKTDLASA--I 105 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~---------~~~~~----~~~qi~~ADivViNK~DL~~~--~ 105 (148)
..+.++.|.|-... ... .-..+|..++|+|+..+. ..... ....++ --++++||+|+.+. -
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp-~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGIN-HLVVVINKMDEPSVQWS 199 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCS-SEEEEEECTTSTTCSSC
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCC-EEEEEEECccCCCcccc
Confidence 34667777775321 111 113579999999998873 11000 001121 03788999999641 0
Q ss_pred hhhH----HHHHHHHHhc-C-C---CCcEEEEEecCCCCHHHHH
Q 032030 106 GADL----AVMERDALRM-R-D---GGPFIFAQVGWVIGIIFTL 140 (148)
Q Consensus 106 ~~~l----~~~~~~i~~~-n-p---~a~vi~tSa~~g~gi~~l~ 140 (148)
.+.+ +++.+.+++. . + ..+++++||++|.|+++++
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 0222 2355555543 2 2 5789999999999997654
No 164
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.23 E-value=2.1e-05 Score=63.47 Aligned_cols=96 Identities=13% Similarity=-0.025 Sum_probs=58.2
Q ss_pred CCCEEEEecCCcee------ee-----------eeccccCceEEEEEeCCCCCCccc-------cCCCCcceeeEEEEec
Q 032030 43 KADLLLCESGGDNL------AA-----------NFSRELADYIIYIIDVSGGDKIPR-------KGGPGITQADLLVINK 98 (148)
Q Consensus 43 ~~D~IliEtsG~~~------~~-----------~~~~~~~d~~i~vvDa~~~~~~~~-------~~~~qi~~ADivViNK 98 (148)
.+++.|+.|.|... +. .+.....+.+++++|+........ ..+...+ -++|+||
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~--~i~V~NK 206 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQR--TIGVITK 206 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTT--EEEEEEC
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCc--eEEEecc
Confidence 47899999999742 10 111234566788888765322110 1112233 5999999
Q ss_pred CCCCCchhhhHHHHHHHHHh-cCC----CCcEEEEEecCCCCHHHHHHhhh
Q 032030 99 TDLASAIGADLAVMERDALR-MRD----GGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 99 ~DL~~~~~~~l~~~~~~i~~-~np----~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+|+.+. .. ...+.++. ..+ ..+++++||++|.|++++++++.
T Consensus 207 ~Dl~~~--~~--~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~ 253 (353)
T 2x2e_A 207 LDLMDE--GT--DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 253 (353)
T ss_dssp GGGSCT--TC--CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHH
T ss_pred ccccCc--ch--hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHH
Confidence 999875 32 01122221 112 35788999999999998887653
No 165
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.21 E-value=0.00094 Score=51.27 Aligned_cols=79 Identities=9% Similarity=0.016 Sum_probs=50.5
Q ss_pred cCceEEEEEeCCCCCCcc---------ccC-CCC-cceeeEEEE-ecC-CCCCchhhhHHHHHHHHH--hcCCCCcEEEE
Q 032030 64 LADYIIYIIDVSGGDKIP---------RKG-GPG-ITQADLLVI-NKT-DLASAIGADLAVMERDAL--RMRDGGPFIFA 128 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~---------~~~-~~q-i~~ADivVi-NK~-DL~~~~~~~l~~~~~~i~--~~np~a~vi~t 128 (148)
..|.+|+|||+...+... ... ... ++.+-++|+ ||. |+... -...++.+.+. .+...-.|.++
T Consensus 125 ~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~L~L~~l~R~W~Iq~c 202 (227)
T 3l82_B 125 VVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHELHLNLLNHPWLVQDT 202 (227)
T ss_dssp HCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHHTTGGGGCSCEEEEEE
T ss_pred CCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHHcCCcCCCCCEEEEEe
Confidence 568899999997653211 111 111 233445555 995 78766 33345555442 34444578999
Q ss_pred EecCCCCHHHHHHhhh
Q 032030 129 QVGWVIGIIFTLSITH 144 (148)
Q Consensus 129 Sa~~g~gi~~l~~~~~ 144 (148)
||+||+|+.+=++|+.
T Consensus 203 sA~TGeGL~EGLdWL~ 218 (227)
T 3l82_B 203 EAETLTGFLNGIEWIL 218 (227)
T ss_dssp ETTTCTTHHHHHHHHT
T ss_pred ECCCCcCHHHHHHHHH
Confidence 9999999999999985
No 166
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.21 E-value=2.4e-05 Score=56.20 Aligned_cols=77 Identities=17% Similarity=0.134 Sum_probs=49.1
Q ss_pred cCceEEEEEeCCCCCCcc----ccCCCCcceeeEEEEecCCCCCchhhhH-HHHHHHHHhcCCCCcEEEEEecCCCCHHH
Q 032030 64 LADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLASAIGADL-AVMERDALRMRDGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~----~~~~~qi~~ADivViNK~DL~~~~~~~l-~~~~~~i~~~np~a~vi~tSa~~g~gi~~ 138 (148)
..|.++.++|+....... .......+ -++|.||+|+.+. ..+ +...+..+..+ .+++++||++|.|+++
T Consensus 85 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~ 158 (188)
T 2wjg_A 85 KPDLVVNIVDATALERNLYLTLQLMEMGAN--LLLALNKMDLAKS--LGIEIDVDKLEKILG--VKVVPLSAAKKMGIEE 158 (188)
T ss_dssp CCSEEEEEEEGGGHHHHHHHHHHHHTTTCC--EEEEEECHHHHHH--TTCCCCHHHHHHHHT--SCEEECBGGGTBSHHH
T ss_pred CCCEEEEEecchhHHHHHHHHHHHHhcCCC--EEEEEEhhhcccc--ccchHHHHHHHHHhC--CCeEEEEecCCCCHHH
Confidence 368889999986543211 11112334 6899999998643 211 12222233333 5899999999999999
Q ss_pred HHHhhhhh
Q 032030 139 TLSITHYI 146 (148)
Q Consensus 139 l~~~~~~~ 146 (148)
+++++.-.
T Consensus 159 l~~~i~~~ 166 (188)
T 2wjg_A 159 LKKAISIA 166 (188)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987643
No 167
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.21 E-value=6.6e-05 Score=66.88 Aligned_cols=96 Identities=14% Similarity=0.006 Sum_probs=62.4
Q ss_pred CCCEEEEecCCceeee-----------------eeccccCceEEEEEeCCCCCCccc-------cCCCCcceeeEEEEec
Q 032030 43 KADLLLCESGGDNLAA-----------------NFSRELADYIIYIIDVSGGDKIPR-------KGGPGITQADLLVINK 98 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~-----------------~~~~~~~d~~i~vvDa~~~~~~~~-------~~~~qi~~ADivViNK 98 (148)
.++++||.|.|+.... .+....+|.+++|+|+..+..... ..+...+ -++|+||
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~p--vIlVlNK 226 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQR--TIGVITK 226 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSS--EEEEEEC
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCC--EEEEEeC
Confidence 4578999999975311 011245789999999987533111 1122344 7999999
Q ss_pred CCCCCchhhhH-HHHHHHHHhc----CCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 99 TDLASAIGADL-AVMERDALRM----RDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 99 ~DL~~~~~~~l-~~~~~~i~~~----np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
+|+++. ... ..+.+ .+. .+..+++++||++|.|+++|++.+.
T Consensus 227 iDlv~~--~~~~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~ 273 (772)
T 3zvr_A 227 LDLMDE--GTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 273 (772)
T ss_dssp TTSSCT--TCCSHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHH
T ss_pred cccCCc--chhhHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHH
Confidence 999976 432 11211 111 2456899999999999998887764
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.20 E-value=2.3e-05 Score=66.69 Aligned_cols=96 Identities=11% Similarity=0.151 Sum_probs=59.7
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhHHHHHH
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVMER 114 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~ 114 (148)
..+.|+.|.|-...... .-..+|..+.|+|+.++...+. .....++ -++++||+|+.+. . .+++.+
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP--iIVviNKiDl~~~--~-~~~v~~ 125 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP--VVVAVNKIDKPEA--D-PDRVKN 125 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC--EEEEEECSSSSTT--C-CCCTTC
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce--EEEEEEecccccc--C-HHHHHH
Confidence 45678888885321111 1135688999999987643211 0112345 6999999999753 1 011211
Q ss_pred HHH-------hcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 115 DAL-------RMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 115 ~i~-------~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.+. .+....+++++||++|.|+++|++++.
T Consensus 126 ~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~ 162 (501)
T 1zo1_I 126 ELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAIL 162 (501)
T ss_dssp CCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTT
T ss_pred HHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhh
Confidence 111 112246899999999999999999875
No 169
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.17 E-value=0.00046 Score=56.37 Aligned_cols=47 Identities=17% Similarity=0.046 Sum_probs=35.6
Q ss_pred eEEEEecCCCCCchhhhH---HHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHh
Q 032030 92 DLLVINKTDLASAIGADL---AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 142 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l---~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~ 142 (148)
-++|+||+||+++ ... +...+.++ ..+.+++++||++|.|+++|...
T Consensus 163 ~iivlNK~DL~~~--~~~~~~~~~~~~y~--~~G~~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 163 PLIVLNKIDLLDD--EGMDFVNEQMDIYR--NIGYRVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp EEEEEECGGGCCH--HHHHHHHHHHHHHH--TTTCCEEECBTTTTBTHHHHHHH
T ss_pred EEEEEECccCCCc--hhHHHHHHHHHHHH--hCCCcEEEEecCCCcCHHHHHHh
Confidence 4999999999987 553 33334444 34568999999999999998764
No 170
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.16 E-value=0.00016 Score=51.99 Aligned_cols=98 Identities=17% Similarity=0.177 Sum_probs=58.4
Q ss_pred CCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCCcc----c------cCCCCcceeeEEEEecCCCCCchh----
Q 032030 44 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIP----R------KGGPGITQADLLVINKTDLASAIG---- 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~~~----~------~~~~qi~~ADivViNK~DL~~~~~---- 106 (148)
+.+.++++.|.-..... .-..+|.+++++|+....... . ...+..+ -++|.||+|+.+...
T Consensus 55 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p--iilv~nK~Dl~~~~~~~~~ 132 (184)
T 1m7b_A 55 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRTDVSTLVE 132 (184)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE--EEEEEECGGGGGCHHHHHH
T ss_pred EEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC--EEEEEEcchhhcchhhHhh
Confidence 34566677774211111 113568899999987643211 0 1112344 589999999974200
Q ss_pred --------hhHHHHHHHHHhcCCCCcEEEEEec-CCCCHHHHHHhhh
Q 032030 107 --------ADLAVMERDALRMRDGGPFIFAQVG-WVIGIIFTLSITH 144 (148)
Q Consensus 107 --------~~l~~~~~~i~~~np~a~vi~tSa~-~g~gi~~l~~~~~ 144 (148)
-..+...+..++.+ ..+++++||+ +|.|++++|+++.
T Consensus 133 ~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~gi~~l~~~i~ 178 (184)
T 1m7b_A 133 LSNHRQTPVSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVAT 178 (184)
T ss_dssp HHTTTCCCCCHHHHHHHHHHHT-CSEEEECBTTTBHHHHHHHHHHHH
T ss_pred hhhcccCCCCHHHHHHHHHHcC-CcEEEEeeecCCCcCHHHHHHHHH
Confidence 11233444444433 3589999999 6899999998875
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.12 E-value=0.00045 Score=64.26 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=59.4
Q ss_pred CCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCcccc------CCCCcceee-EEEEecCCCCCchhhh-H---
Q 032030 44 ADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPRK------GGPGITQAD-LLVINKTDLASAIGAD-L--- 109 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~~------~~~qi~~AD-ivViNK~DL~~~~~~~-l--- 109 (148)
..+.++.|.|-... ... .-..+|..|.|+|+.++...+.. ....++ . ++++||+|+.+. .+ +
T Consensus 359 ~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP--~IIVVINKiDLv~d--~e~le~i 434 (1289)
T 3avx_A 359 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP--YIIVFLNKCDMVDD--EELLELV 434 (1289)
T ss_dssp CEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCS--CEEEEEECCTTCCC--HHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCC--eEEEEEeecccccc--hhhHHHH
Confidence 45666677764311 000 11357999999999887432110 001222 2 688999999864 32 2
Q ss_pred -HHHHHHHHhcC---CCCcEEEEEecCC--------CCHHHHHHhhh
Q 032030 110 -AVMERDALRMR---DGGPFIFAQVGWV--------IGIIFTLSITH 144 (148)
Q Consensus 110 -~~~~~~i~~~n---p~a~vi~tSa~~g--------~gi~~l~~~~~ 144 (148)
+++.+.+++.. ...+++++||++| .|+++|++.+.
T Consensus 435 ~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~ 481 (1289)
T 3avx_A 435 EMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLD 481 (1289)
T ss_dssp HHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHh
Confidence 24455555544 2479999999999 46888888764
No 172
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.10 E-value=0.00032 Score=52.04 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=51.4
Q ss_pred cCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchh------------hhHHHHHHHHHhcCC
Q 032030 64 LADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIG------------ADLAVMERDALRMRD 121 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~------------~~l~~~~~~i~~~np 121 (148)
.+|.+++|+|+.....+.. ...+.++ -++|.||+|+.+... ...+...+..+..+
T Consensus 98 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p--iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 174 (214)
T 3q3j_B 98 DSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG- 174 (214)
T ss_dssp TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE--EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT-
T ss_pred CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC--EEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC-
Confidence 4688999999987532111 0122344 689999999965200 12234444455433
Q ss_pred CCcEEEEEecCCCC-HHHHHHhhhh
Q 032030 122 GGPFIFAQVGWVIG-IIFTLSITHY 145 (148)
Q Consensus 122 ~a~vi~tSa~~g~g-i~~l~~~~~~ 145 (148)
..+++.+||++|.| ++++|+++.-
T Consensus 175 ~~~~~e~SA~~g~g~v~~lf~~l~~ 199 (214)
T 3q3j_B 175 AEIYLEGSAFTSEKSIHSIFRTASM 199 (214)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeccCCCcccHHHHHHHHHH
Confidence 22899999999998 9999998753
No 173
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.10 E-value=0.00032 Score=54.68 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=48.9
Q ss_pred cCceEEEEEeCCCCCCccc----------cCCCCcceeeEEEEecCCCCCchhhh--------------HHHHHHHHHhc
Q 032030 64 LADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIGAD--------------LAVMERDALRM 119 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~----------~~~~qi~~ADivViNK~DL~~~~~~~--------------l~~~~~~i~~~ 119 (148)
.+|.+++|+|+........ ...+.++ -++|+||+|+.+. .. .+...+..+..
T Consensus 226 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~ 301 (332)
T 2wkq_A 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP--IILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQGLAMAKEI 301 (332)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSC--EEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCc--EEEEEEchhcccc--cchhhhccccccccccHHHHHHHHHHc
Confidence 3577788888766432100 0112344 5899999999764 21 12333334432
Q ss_pred CCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 120 RDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 120 np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+++++||++|.|++++++++.-
T Consensus 302 -~~~~~~~~Sa~~~~gi~~l~~~l~~ 326 (332)
T 2wkq_A 302 -GAVKYLECSALTQRGLKTVFDEAIR 326 (332)
T ss_dssp -TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred -CCcEEEEecCCCCcCHHHHHHHHHH
Confidence 2248999999999999999998753
No 174
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.07 E-value=0.00088 Score=55.63 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=61.9
Q ss_pred CCEEEEecCCcee--------eeeec--cccCceEEEEEeCCCCCCccc----c------CCC-CcceeeEEEEecCCCC
Q 032030 44 ADLLLCESGGDNL--------AANFS--RELADYIIYIIDVSGGDKIPR----K------GGP-GITQADLLVINKTDLA 102 (148)
Q Consensus 44 ~D~IliEtsG~~~--------~~~~~--~~~~d~~i~vvDa~~~~~~~~----~------~~~-qi~~ADivViNK~DL~ 102 (148)
..+.+.++.|..- ...|. ...++.++.++|.. ..... . +.. -.....++|+||+|+.
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 3466777777621 11111 12468889999986 21100 0 000 1123379999999998
Q ss_pred CchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 103 SAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 103 ~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+. ..++.+.+.+++ ...+++.+||+++.|+++|++++.-
T Consensus 283 ~~--~~~~~l~~~l~~--~g~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 283 EE--EAVKALADALAR--EGLAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp CH--HHHHHHHHHHHT--TTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred hH--HHHHHHHHHHHh--cCCeEEEEECCCccCHHHHHHHHHH
Confidence 76 666666666653 3468999999999999999998753
No 175
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.07 E-value=6.1e-05 Score=64.11 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=62.5
Q ss_pred cCCCEEEEecCCceee-eeec--------cccCceEEEEEeCCCCCCccccCCCCcc--e-eeEEEEecCCCCCchhhhH
Q 032030 42 FKADLLLCESGGDNLA-ANFS--------RELADYIIYIIDVSGGDKIPRKGGPGIT--Q-ADLLVINKTDLASAIGADL 109 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~-~~~~--------~~~~d~~i~vvDa~~~~~~~~~~~~qi~--~-ADivViNK~DL~~~~~~~l 109 (148)
.++|++||+|.|.... ..+. ....|.+++|+|+..+.+..... ..+. . .+.+|+||+|.....+..+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a-~~~~~~~~i~gvVlNK~D~~~~~g~~l 260 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA-KAFKDKVDVASVIVTKLDGHAKGGGAL 260 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHH-HHHHHHHCCCCEEEECTTSCCCCTHHH
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHH-HHHHhhcCceEEEEeCCccccchHHHH
Confidence 5899999999997531 1110 01357889999998874421100 0111 1 1589999999986522222
Q ss_pred HHHHHH-------------HHhcCCCCcEEEEEecCCCC-HHHHHHhhh
Q 032030 110 AVMERD-------------ALRMRDGGPFIFAQVGWVIG-IIFTLSITH 144 (148)
Q Consensus 110 ~~~~~~-------------i~~~np~a~vi~tSa~~g~g-i~~l~~~~~ 144 (148)
+ +.+. +..+.+..|.+++|+.+|.| +++|++++.
T Consensus 261 ~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~ 308 (504)
T 2j37_W 261 S-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVN 308 (504)
T ss_dssp H-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHT
T ss_pred H-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHH
Confidence 2 2221 12233456667789999999 999988875
No 176
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.06 E-value=6e-05 Score=57.60 Aligned_cols=99 Identities=6% Similarity=-0.017 Sum_probs=58.8
Q ss_pred CCCEEEEecCCceeee----e--------e--ccccCceEEEEEeCCCCCCcc----c----cCCCCcceeeEEEEe-cC
Q 032030 43 KADLLLCESGGDNLAA----N--------F--SRELADYIIYIIDVSGGDKIP----R----KGGPGITQADLLVIN-KT 99 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~----~--------~--~~~~~d~~i~vvDa~~~~~~~----~----~~~~qi~~ADivViN-K~ 99 (148)
+..+.|+.|.|..... . + .-..+|.+++|+|+....... . ..........++|+| |+
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~ 149 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKE 149 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGG
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEccc
Confidence 3468889999964210 0 0 113578999999997632110 0 011111223688888 99
Q ss_pred CCCCchhhhHHH---------HHHHHHhcCC----CCcEEEEEecCCCCHHHHHHhhhh
Q 032030 100 DLASAIGADLAV---------MERDALRMRD----GGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 100 DL~~~~~~~l~~---------~~~~i~~~np----~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
|+.+. . +.. +.+.++.... ..+ +++||++|.|++++++++.-
T Consensus 150 Dl~~~--~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~ 204 (260)
T 2xtp_A 150 DLNGG--S-LMDYMHDSDNKALSKLVAACGGRICAFNN-RAEGSNQDDQVKELMDCIED 204 (260)
T ss_dssp GGTTC--C-HHHHHHHCCCHHHHHHHHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCc--c-HHHHHHhcchHHHHHHHHHhCCeEEEecC-cccccccHHHHHHHHHHHHH
Confidence 99854 2 222 2223443332 223 78999999999999988753
No 177
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.02 E-value=0.00017 Score=62.31 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=48.5
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCC-------Ccccc------CCCCcceeeEEEEecCCCCCchh
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGD-------KIPRK------GGPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~-------~~~~~------~~~qi~~ADivViNK~DL~~~~~ 106 (148)
+..+.|+.|.|.... ... .-..+|..|+|+|+..+. .-+.. ....++. -++|+||+|+.+.-.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~-iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISE-IVVSVNKLDLMSWSE 332 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCC-EEEEEECGGGGTTCH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCe-EEEEEeccccccccH
Confidence 356777888886421 111 113568889999998753 10100 0011221 367999999986211
Q ss_pred hhHHHHHHHHHhcC--------CCCcEEEEEecCCCCHH
Q 032030 107 ADLAVMERDALRMR--------DGGPFIFAQVGWVIGII 137 (148)
Q Consensus 107 ~~l~~~~~~i~~~n--------p~a~vi~tSa~~g~gi~ 137 (148)
..++.+.+.++... ...+++++||++|.|++
T Consensus 333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 44444444444322 13589999999999997
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.01 E-value=0.00073 Score=49.25 Aligned_cols=78 Identities=10% Similarity=-0.011 Sum_probs=52.2
Q ss_pred cCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCchhhhH----HHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADL----AVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~~~~~l----~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
..+.+++++|+..+..... .....++ .+++.||+|+.+. .+. +.+.+.+++.....+.+++||+++
T Consensus 108 ~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~v~nK~D~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~ 183 (210)
T 1pui_A 108 SLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIA--VLVLLTKADKLAS--GARKAQLNMVREAVLAFNGDVQVETFSSLKK 183 (210)
T ss_dssp TEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC--EEEEEECGGGSCH--HHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred cccEEEEEEECCCCCchhHHHHHHHHHHcCCC--eEEEEecccCCCc--hhHHHHHHHHHHHHHhcCCCCceEEEeecCC
Confidence 4577788899876533110 0011333 5778999999886 433 344455554444567899999999
Q ss_pred CCHHHHHHhhhh
Q 032030 134 IGIIFTLSITHY 145 (148)
Q Consensus 134 ~gi~~l~~~~~~ 145 (148)
.|++++++++.-
T Consensus 184 ~~~~~l~~~l~~ 195 (210)
T 1pui_A 184 QGVDKLRQKLDT 195 (210)
T ss_dssp BSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999998754
No 179
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.01 E-value=0.00016 Score=56.04 Aligned_cols=76 Identities=12% Similarity=0.046 Sum_probs=39.2
Q ss_pred CceEEEEEeCCC-CCC-----ccccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhc--CCCCcEEEEEecCCCCH
Q 032030 65 ADYIIYIIDVSG-GDK-----IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRM--RDGGPFIFAQVGWVIGI 136 (148)
Q Consensus 65 ~d~~i~vvDa~~-~~~-----~~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~--np~a~vi~tSa~~g~gi 136 (148)
+|..++++++.. +.. +........+ -++|+||+|+.+. .+++...+.+++. ..+.+++++||+++.|+
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~p--vi~V~nK~D~~~~--~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~ 191 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVN--IIPLIAKADTLTP--EECQQFKKQIMKEIQEHKIKIYEFPETDDEEE 191 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTTTSC--EEEEESSGGGSCH--HHHHHHHHHHHHHHHHTTCCCCCC--------
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhccCC--EEEEEeccCCCCH--HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhH
Confidence 457777776543 322 1111122344 6999999999987 7776554444322 24567899999999999
Q ss_pred HHHHHhhh
Q 032030 137 IFTLSITH 144 (148)
Q Consensus 137 ~~l~~~~~ 144 (148)
+++++++.
T Consensus 192 ~~l~~~l~ 199 (274)
T 3t5d_A 192 NKLVKKIK 199 (274)
T ss_dssp ---CHHHH
T ss_pred HHHHHHHh
Confidence 99887764
No 180
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.00 E-value=0.0016 Score=51.32 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=60.1
Q ss_pred CCCEEEEecCCceee-----eeecc---ccCceEEEEEeCCCCCCcc----------c--cCCCCcceeeEEEEecCCCC
Q 032030 43 KADLLLCESGGDNLA-----ANFSR---ELADYIIYIIDVSGGDKIP----------R--KGGPGITQADLLVINKTDLA 102 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-----~~~~~---~~~d~~i~vvDa~~~~~~~----------~--~~~~qi~~ADivViNK~DL~ 102 (148)
+..+.++.+.|.-.. ....+ ..+|.+++|+|+....... . ...+.++ -++|+||+|+.
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p--iilv~NK~Dl~ 128 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK--IFVLLHKMDLV 128 (307)
T ss_dssp TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE--EEEEEECGGGS
T ss_pred ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe--EEEEEeccccc
Confidence 345667777774211 00000 3578999999998764211 0 0122455 68999999999
Q ss_pred CchhhhH--------HHHHHHHHhcC-CCCcEEEEEecCCCCHHHHHHhhh
Q 032030 103 SAIGADL--------AVMERDALRMR-DGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 103 ~~~~~~l--------~~~~~~i~~~n-p~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
++ .+. +.+.+..+..+ |..+++++||++ .|+.+.|..+.
T Consensus 129 ~~--~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 129 QL--DKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp CH--HHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHH
T ss_pred ch--hhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHH
Confidence 84 332 33444444443 358999999998 88888876654
No 181
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.98 E-value=0.00086 Score=48.19 Aligned_cols=98 Identities=11% Similarity=0.058 Sum_probs=54.5
Q ss_pred CCCEEEEecCCceeeeeecc---ccCceEEEEEeCCCCCC-c---ccc------CCCCcceeeEEEEecCCCCCchhhhH
Q 032030 43 KADLLLCESGGDNLAANFSR---ELADYIIYIIDVSGGDK-I---PRK------GGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~~~---~~~d~~i~vvDa~~~~~-~---~~~------~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
...+-+..|.|.-....+.+ ..++.++.|.|...+.. . ... ..+..+ -++|.||+|+.+. ...
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~p--iilv~nK~Dl~~~--~~~ 130 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP--VILVGTHLDVSDE--KQR 130 (184)
T ss_dssp -CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCE--EEEEEECGGGCCH--HHH
T ss_pred ceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCc--EEEEEECCCcccc--hhh
Confidence 45566677777421111111 23577788889876521 1 100 112334 4677799999876 544
Q ss_pred HHH-HHHHHhcC--CCCc----EEEEEecCCC-CHHHHHHhhh
Q 032030 110 AVM-ERDALRMR--DGGP----FIFAQVGWVI-GIIFTLSITH 144 (148)
Q Consensus 110 ~~~-~~~i~~~n--p~a~----vi~tSa~~g~-gi~~l~~~~~ 144 (148)
... .+..+++. -+.+ ++++||++|. |+++|++.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~ 173 (184)
T 2zej_A 131 KACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTII 173 (184)
T ss_dssp HHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHH
Confidence 321 11122221 1233 8999999997 9999998764
No 182
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.97 E-value=0.00029 Score=52.06 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=57.8
Q ss_pred CCEEEEecCCceeeeeec---cccCceEEEEEeCCCCCCcc----c------cCCCCcceeeEEEEecCCCCCchh----
Q 032030 44 ADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIP----R------KGGPGITQADLLVINKTDLASAIG---- 106 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~~---~~~~d~~i~vvDa~~~~~~~----~------~~~~qi~~ADivViNK~DL~~~~~---- 106 (148)
+.+.++++.|.-....+. -..+|.+++|+|+.....+. . ...+..+ -++|.||+|+.+...
T Consensus 76 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p--iilv~nK~Dl~~~~~~~~~ 153 (205)
T 1gwn_A 76 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRTDVSTLVE 153 (205)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE--EEEEEECGGGGGCHHHHHH
T ss_pred EEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC--EEEEEechhhccchhhhhh
Confidence 345566666642110011 13568899999987643211 0 0112344 589999999974200
Q ss_pred --------hhHHHHHHHHHhcCCCCcEEEEEec-CCCCHHHHHHhhhh
Q 032030 107 --------ADLAVMERDALRMRDGGPFIFAQVG-WVIGIIFTLSITHY 145 (148)
Q Consensus 107 --------~~l~~~~~~i~~~np~a~vi~tSa~-~g~gi~~l~~~~~~ 145 (148)
-..+...+..++.+ ..+++++||+ +|.|++++|+++.-
T Consensus 154 ~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~SAk~~~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 154 LSNHRQTPVSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVATL 200 (205)
T ss_dssp HHTTTCCCCCHHHHHHHHHHHT-CSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred hcccccCCCCHHHHHHHHHHcC-CCEEEEeeeccCCcCHHHHHHHHHH
Confidence 11233444444433 3589999999 68999999988753
No 183
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.97 E-value=0.0005 Score=57.16 Aligned_cols=94 Identities=19% Similarity=0.148 Sum_probs=53.4
Q ss_pred CCCEEEEecCCceee-----eee------ccccCceEEEEEeCCCCCCc-----cc-cCCCCcceeeEEEEecCCCCCch
Q 032030 43 KADLLLCESGGDNLA-----ANF------SRELADYIIYIIDVSGGDKI-----PR-KGGPGITQADLLVINKTDLASAI 105 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-----~~~------~~~~~d~~i~vvDa~~~~~~-----~~-~~~~qi~~ADivViNK~DL~~~~ 105 (148)
+..+.++.|.|.... ..+ .-..+|.+++|+|+..+... .. ......+ -++|+||+|+.+.
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~p--vilV~NK~D~~~~- 146 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKP--VVLAVNKLDNTEM- 146 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSC--EEEEEECC------
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCC--EEEEEECccchhh-
Confidence 457888999995421 001 01247999999998876431 11 1122344 6899999999754
Q ss_pred hhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 106 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 106 ~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
. +...+.++ + ...+.+++||++|.|+++|++.+.
T Consensus 147 -~--~~~~e~~~-l-g~~~~~~iSA~~g~gv~~L~~~i~ 180 (456)
T 4dcu_A 147 -R--ANIYDFYS-L-GFGEPYPISGTHGLGLGDLLDAVA 180 (456)
T ss_dssp -------CCSGG-G-SSSSEEECCTTTCTTHHHHHHHHH
T ss_pred -h--hhHHHHHH-c-CCCceEEeecccccchHHHHHHHH
Confidence 2 12222222 1 223568999999999999998764
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.89 E-value=0.0021 Score=56.61 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=39.1
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~ 104 (148)
.+++.||.|.|-... ... .-..+|..++|+|+..+...+. .....++ -++++||+|+...
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip--~ilviNKiD~~~~ 149 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVP--RIAFVNKMDRMGA 149 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC--EEEEEeCCCcccc
Confidence 488999999996431 100 1135799999999988754211 0112344 6899999999764
No 185
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.81 E-value=0.0016 Score=57.10 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=38.2
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~ 104 (148)
+..+.++.|.|.... ... .-..+|.+++|+|+..+...+. .....++ -++|+||+|+...
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p--~ivviNKiD~~~~ 144 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP--RIAFANKMDKTGA 144 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC--EEEEEECTTSTTC
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC--EEEEEECCCcccC
Confidence 467888888886421 000 0125789999999988754211 0112344 6899999999864
No 186
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.80 E-value=0.0011 Score=48.24 Aligned_cols=78 Identities=17% Similarity=-0.001 Sum_probs=50.0
Q ss_pred cCceEEEEEeCCCCCCcc---cc-------CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 032030 64 LADYIIYIIDVSGGDKIP---RK-------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 133 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~---~~-------~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g 133 (148)
..+..++|.|........ .. .....+ -++++||+|+.+......+...+..+ .|..+++.+||+++
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~--i~~v~nK~Dl~~~~~~~~~~a~~l~~--~~~~~~~d~Sal~~ 152 (199)
T 2f9l_A 77 GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV--IMLVGNKSDLRHLRAVPTDEARAFAE--KNNLSFIETSALDS 152 (199)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE--EEEEEECTTCGGGCCSCHHHHHHHHH--HTTCEEEECCTTTC
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe--EEEEEECcccccccCcCHHHHHHHHH--HcCCeEEEEeCCCC
Confidence 457788899986542110 00 011223 58899999997531112233444444 36678999999999
Q ss_pred CCHHHHHHhhhh
Q 032030 134 IGIIFTLSITHY 145 (148)
Q Consensus 134 ~gi~~l~~~~~~ 145 (148)
.|++++++++.-
T Consensus 153 ~~i~~l~~~l~~ 164 (199)
T 2f9l_A 153 TNVEEAFKNILT 164 (199)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999988753
No 187
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.76 E-value=0.004 Score=53.07 Aligned_cols=60 Identities=17% Similarity=0.106 Sum_probs=38.9
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~ 104 (148)
+..+.++.|.|.... ... .-..+|..++|+|+..+...+. .....++ -++++||+|+.+.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip--iivviNK~Dl~~~ 149 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP--ILTFMNKLDRDIR 149 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC--EEEEEECTTSCCS
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC--EEEEEcCcCCccc
Confidence 467888899986421 000 1135799999999988754211 1122455 6999999999865
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.71 E-value=0.0016 Score=55.76 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=28.2
Q ss_pred cCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCc
Q 032030 64 LADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~ 104 (148)
.+|..|.||||..|...+. .....++ -+++|||+|+...
T Consensus 123 ~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp--~i~fINK~Dr~~a 167 (548)
T 3vqt_A 123 AVDSALVVIDAAKGVEAQTRKLMDVCRMRATP--VMTFVNKMDREAL 167 (548)
T ss_dssp SCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC--EEEEEECTTSCCC
T ss_pred hcCceEEEeecCCCcccccHHHHHHHHHhCCc--eEEEEecccchhc
Confidence 4688899999999866321 1123456 6899999998664
No 189
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.63 E-value=0.00053 Score=53.52 Aligned_cols=95 Identities=15% Similarity=-0.018 Sum_probs=55.0
Q ss_pred CCCEEEEecCCceeee------e----e------ccccCceEEEEEeCC-CCCC-cc-----c-cCCCCcceeeEEEEec
Q 032030 43 KADLLLCESGGDNLAA------N----F------SRELADYIIYIIDVS-GGDK-IP-----R-KGGPGITQADLLVINK 98 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~------~----~------~~~~~d~~i~vvDa~-~~~~-~~-----~-~~~~qi~~ADivViNK 98 (148)
..+++|+.|.|..... . + .-..+|.+++++|+. .... .. . ......+ -++|+||
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~--~i~v~NK 207 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKR--TIGVITK 207 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSS--EEEEEEC
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCc--EEEEEcC
Confidence 4689999999974210 0 1 012568888899863 3211 01 1 1112333 7999999
Q ss_pred CCCCCchhhhHHHHHHHHHh-c----CCCCcEEEEEecC---CCCHHHHHHhh
Q 032030 99 TDLASAIGADLAVMERDALR-M----RDGGPFIFAQVGW---VIGIIFTLSIT 143 (148)
Q Consensus 99 ~DL~~~~~~~l~~~~~~i~~-~----np~a~vi~tSa~~---g~gi~~l~~~~ 143 (148)
+|+.+. .. ...+.++. . .+..++...|+.+ +.|++++++..
T Consensus 208 ~Dl~~~--~~--~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 208 LDLMDK--GT--DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp TTSSCS--SC--CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred cccCCc--ch--HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 999876 43 12223332 1 1234555666666 78999998774
No 190
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.63 E-value=0.0021 Score=56.13 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCHHHHHHhhh
Q 032030 123 GPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 123 a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
.|++.+||++|.|+++|++.+.
T Consensus 248 ~pv~~~SA~~~~Gv~~Ll~~i~ 269 (665)
T 2dy1_A 248 YPVALASGEREIGVLPLLELIL 269 (665)
T ss_dssp EEEEECBTTTTBSHHHHHHHHH
T ss_pred eEEEEeecccCcCHHHHHHHHH
Confidence 5899999999999999999875
No 191
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.62 E-value=0.0016 Score=52.21 Aligned_cols=79 Identities=10% Similarity=0.055 Sum_probs=50.6
Q ss_pred cCceEEEEEeCCCCCCcccc---------CCC-C-cceeeEEEE-ec-CCCCCchhhhHHHHHHHHH--hcCCCCcEEEE
Q 032030 64 LADYIIYIIDVSGGDKIPRK---------GGP-G-ITQADLLVI-NK-TDLASAIGADLAVMERDAL--RMRDGGPFIFA 128 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~~---------~~~-q-i~~ADivVi-NK-~DL~~~~~~~l~~~~~~i~--~~np~a~vi~t 128 (148)
..|.+|+|||+...+..... ..+ . ++.|-++|+ || -|+... -...++.+.+. ++...-.|..+
T Consensus 210 ~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e~L~L~~l~r~W~Iq~c 287 (312)
T 3l2o_B 210 VVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHELHLNLLNHPWLVQDT 287 (312)
T ss_dssp HCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHHHTTGGGGCSCEEEEEE
T ss_pred CCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHHHcCCccCCCcEEEEec
Confidence 46888999999876542210 111 1 233335555 87 588766 33345555442 34444578999
Q ss_pred EecCCCCHHHHHHhhh
Q 032030 129 QVGWVIGIIFTLSITH 144 (148)
Q Consensus 129 Sa~~g~gi~~l~~~~~ 144 (148)
||+||+|+.+=++|+.
T Consensus 288 sA~tGeGL~EGldWL~ 303 (312)
T 3l2o_B 288 EAETLTGFLNGIEWIL 303 (312)
T ss_dssp ETTTCTTHHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHH
Confidence 9999999999999975
No 192
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.59 E-value=0.0015 Score=47.45 Aligned_cols=77 Identities=18% Similarity=0.062 Sum_probs=49.1
Q ss_pred CceEEEEEeCCCCCCc---ccc-------CCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 032030 65 ADYIIYIIDVSGGDKI---PRK-------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI 134 (148)
Q Consensus 65 ~d~~i~vvDa~~~~~~---~~~-------~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~ 134 (148)
.+..++|.|....... ... .....+ -++++||+||.+......+..++..+ .|...++.+||+++.
T Consensus 102 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~--i~~v~nK~Dl~~~~~~~~~~a~~l~~--~~~~~~ld~Sald~~ 177 (191)
T 1oix_A 102 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIV--IMLVGNKSDLRHLRAVPTDEARAFAE--KNGLSFIETSALDST 177 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE--EEEEEECGGGGGGCCSCHHHHHHHHH--HTTCEEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc--EEEEEECcccccccccCHHHHHHHHH--HcCCEEEEEeCCCCC
Confidence 4667888997653211 000 111222 58899999996531112234444444 467889999999999
Q ss_pred CHHHHHHhhhh
Q 032030 135 GIIFTLSITHY 145 (148)
Q Consensus 135 gi~~l~~~~~~ 145 (148)
|++++++++.-
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999998753
No 193
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.49 E-value=0.0021 Score=52.08 Aligned_cols=70 Identities=13% Similarity=0.009 Sum_probs=35.2
Q ss_pred ceEEEEEeC-CCCCC-----ccccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcC--CCCcEEEEEecCCCCHH
Q 032030 66 DYIIYIIDV-SGGDK-----IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMR--DGGPFIFAQVGWVIGII 137 (148)
Q Consensus 66 d~~i~vvDa-~~~~~-----~~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~n--p~a~vi~tSa~~g~gi~ 137 (148)
|.+++++++ .++.. +.......++ -++|+||+|+.+. .++....+.+++.. .+.+++++||++|.| +
T Consensus 147 ~~~vy~I~~~~~~l~~~d~~~~~~l~~~~p--iIlV~NK~Dl~~~--~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~ 221 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDVAFMKAIHNKVN--IVPVIAKADTLTL--KERERLKKRILDEIEEHNIKIYHLPDAESDE-D 221 (361)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHTCS-SC--EEEEEECCSSSCH--HHHHHHHHHHHHHTTCC-CCSCCCC--------
T ss_pred EEEEEEEecCCCCcchhHHHHHHHhccCCC--EEEEEECCCCCCH--HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-c
Confidence 456777775 33322 1111223344 6999999999987 76655444443222 356899999999988 5
Q ss_pred HHH
Q 032030 138 FTL 140 (148)
Q Consensus 138 ~l~ 140 (148)
+.+
T Consensus 222 e~~ 224 (361)
T 2qag_A 222 EDF 224 (361)
T ss_dssp --C
T ss_pred hhH
Confidence 544
No 194
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.24 E-value=0.00065 Score=56.76 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=55.8
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCC---------Ccccc----CCCCcceeeEEEEecCCCCCchh
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGD---------KIPRK----GGPGITQADLLVINKTDLASAIG 106 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~---------~~~~~----~~~qi~~ADivViNK~DL~~~~~ 106 (148)
+..+.++.|.|-... ... .-..+|..++|+|+.++. ..... ....++ --++++||+|+.+.-.
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~-~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVR-QLIVAVNKMDSVKWDE 162 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCC-EEEEEEECGGGGTTCH
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCC-eEEEEEEccccccCCH
Confidence 356888999995321 000 124679999999998652 11000 001121 1377899999984201
Q ss_pred hhHHH----HHHHHHhcCC---CCcEEEEEecCCCCHHH
Q 032030 107 ADLAV----MERDALRMRD---GGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 107 ~~l~~----~~~~i~~~np---~a~vi~tSa~~g~gi~~ 138 (148)
+.++. +.+.++...- ..+++++||++|.|+++
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 33333 4444444331 47999999999999874
No 195
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.23 E-value=0.006 Score=53.53 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCCEEEEecCCceee-eee--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNLA-ANF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-~~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~ 104 (148)
+..+.++.|.|.... ... .-..+|.+++|+|+..+...+. .....++ -++|+||+|+.+.
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p--~ilviNK~Dl~~~ 142 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVP--RIVFVNKMDKLGA 142 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC--EEEEEECTTSTTC
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCC--EEEEEECCCcccc
Confidence 456888899886421 000 0124799999999988654211 0112334 6999999999865
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.15 E-value=0.0016 Score=51.36 Aligned_cols=48 Identities=8% Similarity=-0.136 Sum_probs=28.3
Q ss_pred eEEEEecCCCCCchhhhHH----HHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 92 DLLVINKTDLASAIGADLA----VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~----~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
-++|+||.|+.+. .++. ++.+.++.. +.+++++||++| |++++|.+++
T Consensus 158 iilV~~K~Dl~~~--~e~~~~~~~~~~~~~~~--~~~~~e~Sa~~~-~v~e~f~~l~ 209 (301)
T 2qnr_A 158 IVPVIAKADTLTL--KERERLKKRILDEIEEH--NIKIYHLPDAES-DEDEDFKEQT 209 (301)
T ss_dssp EEEEECCGGGSCH--HHHHHHHHHHHHHHHHT--TCCCCCCC----------CHHHH
T ss_pred EEEEEEeCCCCCH--HHHHHHHHHHHHHHHHc--CCeEEecCCccc-cccHHHHHHH
Confidence 5899999999886 6553 445555544 478999999999 9999887654
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.13 E-value=0.0019 Score=56.15 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=36.0
Q ss_pred CCEEEEecCCceee-eeec--cccCceEEEEEeCCCCCCcccc------CCCCcceeeEEEEecCCCCCc
Q 032030 44 ADLLLCESGGDNLA-ANFS--RELADYIIYIIDVSGGDKIPRK------GGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 44 ~D~IliEtsG~~~~-~~~~--~~~~d~~i~vvDa~~~~~~~~~------~~~qi~~ADivViNK~DL~~~ 104 (148)
.-+=||-|.|-... .... -..+|..|.||||.+|...+.. ....++ -+++|||+|+...
T Consensus 67 ~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp--~i~~INKmDr~~a 134 (638)
T 3j25_A 67 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP--TIFFINKIDQNGI 134 (638)
T ss_dssp CBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCS--CEECCEECCSSSC
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC--eEEEEeccccccC
Confidence 44556777774421 0000 1257999999999998653211 112455 5999999998653
No 198
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.97 E-value=0.0019 Score=54.13 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=53.6
Q ss_pred hcCCCEEEEecCCceee-e-------ee-ccccCceEEEEEeCCCCCCccc---cCCCCcceeeEEEEecCCCCCchhhh
Q 032030 41 LFKADLLLCESGGDNLA-A-------NF-SRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 41 ~~~~D~IliEtsG~~~~-~-------~~-~~~~~d~~i~vvDa~~~~~~~~---~~~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
..++|+|+|+|.|.... . .+ .....|.+++|+|+..+.+... .+.+.+. .+.+|+||.|.... .-
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~-i~gVIlTKlD~~~~--gG 256 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATP-IGSIIVTKLDGSAK--GG 256 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCT-TEEEEEECCSSCSS--HH
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCC-CeEEEEECCCCccc--cc
Confidence 35799999999996421 1 01 0112477899999987643211 1111111 25799999999876 32
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 109 LAVMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 109 l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
.+..... ..+.|+.+++. |++++.|
T Consensus 257 --~~ls~~~--~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 257 --GALSAVA--ATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp --HHHHHHH--TTCCCEEEEEC--SSSTTCE
T ss_pred --HHHHHHH--HHCCCEEEEEc--CCChHHh
Confidence 2333333 24578888885 6776543
No 199
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.87 E-value=0.0012 Score=53.56 Aligned_cols=80 Identities=14% Similarity=0.058 Sum_probs=50.5
Q ss_pred cCceEEEEEeCCCCCC----------cc-------ccCC----CCcceeeEEEEecCCCCCch---------------hh
Q 032030 64 LADYIIYIIDVSGGDK----------IP-------RKGG----PGITQADLLVINKTDLASAI---------------GA 107 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~----------~~-------~~~~----~qi~~ADivViNK~DL~~~~---------------~~ 107 (148)
.++.+|+|+|....+. +. .... ...+ -+|+.||+||..+- ..
T Consensus 216 ~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p--iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~ 293 (353)
T 1cip_A 216 GVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS--IILFLNKKDLFEEKIKKSPLTICYPEYAGSN 293 (353)
T ss_dssp TCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE--EEEEEECHHHHHHHHTTSCGGGTCTTCCSCS
T ss_pred cCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc--EEEEEECcCchhhhccccchhhcccccCCCC
Confidence 5688899999887432 00 0001 1233 69999999984210 01
Q ss_pred hHHHHHHHHH----hcC-----CCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 108 DLAVMERDAL----RMR-----DGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 108 ~l~~~~~~i~----~~n-----p~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
..+...++++ .++ ....++.|||++|.|+.++|+++.-
T Consensus 294 ~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 294 TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp CHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 2334444444 332 3457889999999999999998763
No 200
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.35 E-value=0.0037 Score=50.83 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=49.8
Q ss_pred cCceEEEEEeCCCCCCcc-----------------cc-CC---CCcceeeEEEEecCCCCCch----------------h
Q 032030 64 LADYIIYIIDVSGGDKIP-----------------RK-GG---PGITQADLLVINKTDLASAI----------------G 106 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~-----------------~~-~~---~qi~~ADivViNK~DL~~~~----------------~ 106 (148)
.++.+|+|+|.+..+... .. .. ...+ -++++||+||..+- .
T Consensus 224 ~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p--iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~ 301 (362)
T 1zcb_A 224 SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS--IILFLNKTDLLEEKVQVVSIKDYFLEFEGDP 301 (362)
T ss_dssp TCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE--EEEEEECHHHHHHHTTTCCGGGTCTTCCSCT
T ss_pred CCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC--EEEEEEChhhhhhhccccchhhcCccccCCC
Confidence 568889999998853210 00 00 1233 68999999985210 0
Q ss_pred hhHHHHHHHH----HhcC-----CCCcEEEEEecCCCCHHHHHHhhhh
Q 032030 107 ADLAVMERDA----LRMR-----DGGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 107 ~~l~~~~~~i----~~~n-----p~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+...+++ ..++ ....++.|||++|.|++++|+++.-
T Consensus 302 ~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 302 HCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp TCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 1234444444 2222 2357789999999999999988753
No 201
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.16 E-value=0.0032 Score=51.10 Aligned_cols=22 Identities=5% Similarity=-0.263 Sum_probs=19.0
Q ss_pred cEEEEEecCCCCHHHHHHhhhh
Q 032030 124 PFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 124 ~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
.++.|||+++.|++++|+++.-
T Consensus 320 ~~~eTSA~d~~nV~~vF~~v~~ 341 (354)
T 2xtz_A 320 KIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp EEEECCTTCHHHHHHHHHHHHH
T ss_pred EEEEEEeecchhHHHHHHHHHH
Confidence 4689999999999999988753
No 202
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.11 E-value=0.0054 Score=44.87 Aligned_cols=88 Identities=16% Similarity=0.228 Sum_probs=42.7
Q ss_pred CCEEEEecCCceee----eeecc---ccCceEEEEEeCC-CCCCccc---c-----------CCCCcceeeEEEEecCCC
Q 032030 44 ADLLLCESGGDNLA----ANFSR---ELADYIIYIIDVS-GGDKIPR---K-----------GGPGITQADLLVINKTDL 101 (148)
Q Consensus 44 ~D~IliEtsG~~~~----~~~~~---~~~d~~i~vvDa~-~~~~~~~---~-----------~~~qi~~ADivViNK~DL 101 (148)
..+.++++.|.... ..+.. ..+|.+++|+|+. ....+.. . ....++ -++|+||+|+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~ilv~nK~Dl 132 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID--ILIACNKSEL 132 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC--EEEEEECTTS
T ss_pred ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCC--EEEEEEchHh
Confidence 46788889886421 11111 1268899999998 3322110 0 122344 6899999999
Q ss_pred CCchhhhHHHH----HHHHHhc--CCCCcEEEEEecCCCC
Q 032030 102 ASAIGADLAVM----ERDALRM--RDGGPFIFAQVGWVIG 135 (148)
Q Consensus 102 ~~~~~~~l~~~----~~~i~~~--np~a~vi~tSa~~g~g 135 (148)
.+. ...+++ .+.++.+ ....+++++||++|.+
T Consensus 133 ~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 133 FTA--RPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp TTC--CCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ccc--CCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 886 433322 2112111 1224666777776653
No 203
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=94.70 E-value=0.024 Score=45.74 Aligned_cols=77 Identities=18% Similarity=0.101 Sum_probs=48.0
Q ss_pred cCceEEEEEeCCCCC-C-ccc---------cCCCCcceeeEEEEecCCCCCchhhhH----HHHHH-HHHhcC------C
Q 032030 64 LADYIIYIIDVSGGD-K-IPR---------KGGPGITQADLLVINKTDLASAIGADL----AVMER-DALRMR------D 121 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~-~-~~~---------~~~~qi~~ADivViNK~DL~~~~~~~l----~~~~~-~i~~~n------p 121 (148)
.++..++|+|..... . ... ...+.++ -+++.||+||.++ .+. ..+.+ ..+++. -
T Consensus 72 ~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ip--illvgNK~DL~~~--~~R~~~~R~V~~~~~~~la~~~~~~~ 147 (331)
T 3r7w_B 72 SVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSIN--IEVLIHKVDGLSE--DFKVDAQRDIMQRTGEELLELGLDGV 147 (331)
T ss_dssp TCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCE--EEEECCCCCSSCS--HHHHHHHHHHHHHHHHTTSSSSCSCC
T ss_pred CCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCc--EEEEEECcccCch--hhhhhHHHHhhHHHHHHHHhhccccc
Confidence 568889999987641 1 000 0123344 5899999999986 542 12222 122222 2
Q ss_pred CCcEEEEEecCCCCHHHHHHhhhh
Q 032030 122 GGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 122 ~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
+.+.+.|||++ .++.+.|..++.
T Consensus 148 ~i~f~eTSAkd-~nV~eAFs~iv~ 170 (331)
T 3r7w_B 148 QVSFYLTSIFD-HSIYEAFSRIVQ 170 (331)
T ss_dssp CEEEECCCSSS-SHHHHHHHHHHT
T ss_pred CceEEEeccCC-CcHHHHHHHHHH
Confidence 46889999986 689998887654
No 204
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.64 E-value=0.0043 Score=51.00 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=35.5
Q ss_pred eEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHH
Q 032030 92 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 141 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~ 141 (148)
.++|+||+|+... ..++++.+.+... +++++++||+.+.|+.++++
T Consensus 217 ~i~v~NK~D~~~~--~~l~~l~~~~~~~--~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 217 MVIAANKADAASD--EQIKRLVREEEKR--GYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp EEEEEECGGGSCH--HHHHHHHHHHHHT--TCEEEEECHHHHHHHHSCSS
T ss_pred EEEEEeCccccch--HHHHHHHHHHhhc--CCcEEEEeccchhhHHHHHh
Confidence 7999999999855 5566776655532 47899999999999877543
No 205
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.61 E-value=0.02 Score=42.81 Aligned_cols=100 Identities=9% Similarity=0.065 Sum_probs=54.8
Q ss_pred CCCEEEEecCCceee--------eee------ccccCceEEEEEeCCCCCCccc----cC----CCCcceeeEEEEecCC
Q 032030 43 KADLLLCESGGDNLA--------ANF------SRELADYIIYIIDVSGGDKIPR----KG----GPGITQADLLVINKTD 100 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--------~~~------~~~~~d~~i~vvDa~~~~~~~~----~~----~~qi~~ADivViNK~D 100 (148)
+..+.++.|.|.... ..+ .....|.++.|+|+........ .. ......--++|+||+|
T Consensus 77 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D 156 (239)
T 3lxx_A 77 ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKD 156 (239)
T ss_dssp TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGG
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCc
Confidence 346788999996421 011 1134689999999875433100 00 0011112689999999
Q ss_pred CCCchhhhHH--------HHHHHHHhcCCCCcEEEEEecC-----CCCHHHHHHhhhhh
Q 032030 101 LASAIGADLA--------VMERDALRMRDGGPFIFAQVGW-----VIGIIFTLSITHYI 146 (148)
Q Consensus 101 L~~~~~~~l~--------~~~~~i~~~np~a~vi~tSa~~-----g~gi~~l~~~~~~~ 146 (148)
+.+. ..++ .+.+.+++... +++.++... +.++.+|++.+..+
T Consensus 157 ~~~~--~~~~~~i~~~~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~v~~ll~~i~~~ 211 (239)
T 3lxx_A 157 DLGD--TNLHDYLREAPEDIQDLMDIFGD--RYCALNNKATGAEQEAQRAQLLGLIQRV 211 (239)
T ss_dssp GC--------------CHHHHHHHHHHSS--SEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCc--ccHHHHHHhchHHHHHHHHHcCC--EEEEEECCCCccccHHHHHHHHHHHHHH
Confidence 9876 5443 35555555443 455665543 36899999877654
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=94.58 E-value=0.042 Score=48.22 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=27.4
Q ss_pred cCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCCCc
Q 032030 64 LADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 64 ~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~~~ 104 (148)
.+|..|.|||+.+|...+. .....++ -+++|||+|+...
T Consensus 108 ~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp--~i~~iNKiDr~~a 152 (709)
T 4fn5_A 108 VLDGAVVVFCGTSGVEPQSETVWRQANKYGVP--RIVYVNKMDRQGA 152 (709)
T ss_dssp HCSEEEEEEETTTCSCHHHHHHHHHHHHHTCC--EEEEEECSSSTTC
T ss_pred HhCeEEEEEECCCCCchhHHHHHHHHHHcCCC--eEEEEccccccCc
Confidence 4688899999999865321 1122455 6999999998653
No 207
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.11 E-value=0.0013 Score=54.91 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=38.6
Q ss_pred cCCCEEEEecCCceee-ee-------ecc-ccCceEEEEEeCCCCCCccc---cCCCCcceeeEEEEecCCCCCc
Q 032030 42 FKADLLLCESGGDNLA-AN-------FSR-ELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~-~~-------~~~-~~~d~~i~vvDa~~~~~~~~---~~~~qi~~ADivViNK~DL~~~ 104 (148)
.++|+|+|.|.|.... .. +.. ...|.+++|+|+..+.+... .+...+.--..+|+||+|....
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSCSCEEEEEECSSSCST
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhcccCCeEEEEeCCCCccc
Confidence 5799999999997531 11 111 13577899999977643211 1111120126899999998754
No 208
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.97 E-value=0.016 Score=48.12 Aligned_cols=49 Identities=6% Similarity=-0.174 Sum_probs=25.5
Q ss_pred eeEEEEecCCCCCchhhhHHH----HHHHHHhcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 91 ADLLVINKTDLASAIGADLAV----MERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 91 ADivViNK~DL~~~~~~~l~~----~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
.-++|+||+|+.+. .++.. +.+.++.. +.+++.+|++++.++++++..+
T Consensus 169 ~iIlVinK~Dll~~--~ev~~~k~~i~~~~~~~--~i~~~~~sa~~~~~v~~~~~~l 221 (418)
T 2qag_C 169 NIIPLIAKADTLTP--EECQQFKKQIMKEIQEH--KIKIYEFPETDDEEENKLVKKI 221 (418)
T ss_dssp EEEEEEESTTSSCH--HHHHHHHHHHHHHHHHH--TCCCCCCC--------------
T ss_pred cEEEEEEcccCccH--HHHHHHHHHHHHHHHHc--CCeEEeCCCCCCcCHHHHHHHH
Confidence 37999999999987 66654 34444433 5788999999999998766544
No 209
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=93.92 E-value=0.0093 Score=47.95 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=35.3
Q ss_pred eEEEEecCCCCCch----------------hhhHHHHHHHH----HhcCC----CCcEEEEEecCCCCHHHHHHhhhh
Q 032030 92 DLLVINKTDLASAI----------------GADLAVMERDA----LRMRD----GGPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 92 DivViNK~DL~~~~----------------~~~l~~~~~~i----~~~np----~a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
-++++||+||..+- ....+...+++ .++++ ....+.|||+++.|++++|+.+.=
T Consensus 237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 58999999985420 01334444443 33332 235678999999999999988753
No 210
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=92.57 E-value=0.017 Score=47.74 Aligned_cols=24 Identities=13% Similarity=-0.244 Sum_probs=19.8
Q ss_pred CcEEEEEecCCCCHHHHHHhhhhh
Q 032030 123 GPFIFAQVGWVIGIIFTLSITHYI 146 (148)
Q Consensus 123 a~vi~tSa~~g~gi~~l~~~~~~~ 146 (148)
...+.|||+++.|++++|+++.-+
T Consensus 359 ~~~~~TSA~d~~nV~~vF~~v~~~ 382 (402)
T 1azs_C 359 CYPHFTCAVDTENIRRVFNDCRDI 382 (402)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCcCHHHHHHHHHHH
Confidence 346789999999999999987643
No 211
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.57 E-value=0.04 Score=45.93 Aligned_cols=87 Identities=20% Similarity=0.192 Sum_probs=50.6
Q ss_pred cCCCEEEEecCCcee---eeeec--------cccCceEEEEEeCCCCCCccc---cCCCCcceeeEEEEecCCCCCchhh
Q 032030 42 FKADLLLCESGGDNL---AANFS--------RELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGA 107 (148)
Q Consensus 42 ~~~D~IliEtsG~~~---~~~~~--------~~~~d~~i~vvDa~~~~~~~~---~~~~qi~~ADivViNK~DL~~~~~~ 107 (148)
.++|+|+|.|.|... ...+. ....|.+++|+|+..+.+... .+.+.+ ..+.+++||.|.....+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~-~~~gVIlTKlD~~a~~G~ 256 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQAS-PIGSVIITKMDGTAKGGG 256 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHC-SSEEEEEECGGGCSCHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhccc-CCcEEEEecccccccchH
Confidence 479999999999532 11110 012367899999987643211 111111 236899999998765222
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCCCCHH
Q 032030 108 DLAVMERDALRMRDGGPFIFAQVGWVIGII 137 (148)
Q Consensus 108 ~l~~~~~~i~~~np~a~vi~tSa~~g~gi~ 137 (148)
+...... -+.||.+++. |++++
T Consensus 257 ----als~~~~--~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 257 ----ALSAVVA--TGATIKFIGT--GEKID 278 (433)
T ss_dssp ----HHHHHHH--HTCEEEEEEC--CSSSS
T ss_pred ----HHHHHHH--HCCCEEEEEC--CCChH
Confidence 2222332 2578888885 66654
No 212
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.32 E-value=0.029 Score=42.63 Aligned_cols=100 Identities=8% Similarity=-0.010 Sum_probs=55.5
Q ss_pred CCCEEEEecCCceee-----e--------ee--ccccCceEEEEEeCCCCCCcc--------ccCCC-CcceeeEEEEec
Q 032030 43 KADLLLCESGGDNLA-----A--------NF--SRELADYIIYIIDVSGGDKIP--------RKGGP-GITQADLLVINK 98 (148)
Q Consensus 43 ~~D~IliEtsG~~~~-----~--------~~--~~~~~d~~i~vvDa~~~~~~~--------~~~~~-qi~~ADivViNK 98 (148)
+..+.|+.|.|.... . .+ .....|.+++|+|+....... ..+.. .....-+++.||
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK 148 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRK 148 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEch
Confidence 456889999996310 0 00 125678999999987532110 00111 113346899999
Q ss_pred CCCCCc-hhhhH-----HHHHHHHHhcCCCCcEEEEEecC-----CCCHHHHHHhhh
Q 032030 99 TDLASA-IGADL-----AVMERDALRMRDGGPFIFAQVGW-----VIGIIFTLSITH 144 (148)
Q Consensus 99 ~DL~~~-~~~~l-----~~~~~~i~~~np~a~vi~tSa~~-----g~gi~~l~~~~~ 144 (148)
.|+.+. ..+.+ +.+.+.+++... +++..+... +.|+++|++.+.
T Consensus 149 ~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~--~~~~~~~~~~~~~~~~~v~~Ll~~i~ 203 (247)
T 3lxw_A 149 EDLAGGSLHDYVSNTENRALRELVAECGG--RVCAFDNRATGREQEAQVEQLLGMVE 203 (247)
T ss_dssp GGGTTCCHHHHHHHCCCHHHHHHHHHTTT--CEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHhhcccHHHHHHHHHcCC--eEEEEeCCCCccccHHHHHHHHHHHH
Confidence 999764 11111 224455554333 444444333 589999987653
No 213
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=91.12 E-value=0.038 Score=44.16 Aligned_cols=91 Identities=19% Similarity=0.081 Sum_probs=52.6
Q ss_pred CCCEEEEecCCceeee------e-------e---ccccCceEEEEEeCCCCCCc-c------c-cCCCCcceeeEEEEec
Q 032030 43 KADLLLCESGGDNLAA------N-------F---SRELADYIIYIIDVSGGDKI-P------R-KGGPGITQADLLVINK 98 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~------~-------~---~~~~~d~~i~vvDa~~~~~~-~------~-~~~~qi~~ADivViNK 98 (148)
.+++.++.|.|..-.. . . .-...|.+++++|+...+.. . . ..+...+ -++|+||
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~--~i~V~nK 212 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDR--TFGVLTK 212 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT--EEEEEEC
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCC--EEEEEeC
Confidence 4678899999964210 0 0 01246777888876543211 0 1 1122334 7999999
Q ss_pred CCCCCchhhhHHHHHHHHH--hcCCCCcEEEEEecCCCCHHHH
Q 032030 99 TDLASAIGADLAVMERDAL--RMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 99 ~DL~~~~~~~l~~~~~~i~--~~np~a~vi~tSa~~g~gi~~l 139 (148)
+|++++ ... ..+.++ ...-..+++.+|+.++.++++.
T Consensus 213 ~Dl~~~--~~~--~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 213 IDLMDK--GTD--AVEILEGRSFKLKYPWVGVVNRSQADINKN 251 (360)
T ss_dssp GGGCCT--TCC--SHHHHTTSSSCCSSCCEEECCCCHHHHHTT
T ss_pred CccCCC--ccc--HHHHHcCccccccCCeEEEEECChHHhccC
Confidence 999875 321 122222 2233467889999988887654
No 214
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=90.84 E-value=0.033 Score=45.03 Aligned_cols=23 Identities=4% Similarity=-0.386 Sum_probs=19.2
Q ss_pred CcEEEEEecCCCCHHHHHHhhhh
Q 032030 123 GPFIFAQVGWVIGIIFTLSITHY 145 (148)
Q Consensus 123 a~vi~tSa~~g~gi~~l~~~~~~ 145 (148)
...+.|||+++.+++.+|+.+.-
T Consensus 302 iy~h~TsA~dt~nv~~vF~~v~~ 324 (340)
T 4fid_A 302 VYTNPTNATDGSNIKRVFMLAVD 324 (340)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHH
T ss_pred eEEEEEEeeCcHHHHHHHHHHHH
Confidence 45678999999999999987753
No 215
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.24 E-value=0.33 Score=35.18 Aligned_cols=47 Identities=23% Similarity=0.217 Sum_probs=24.6
Q ss_pred hhhhhhh-------hhcCCCeeeeecc-chhhchHHHHHhhhhcCCCEEEEecCCce
Q 032030 7 PEERIRA-------VETGGCPHAAIRE-DISINLGPLEELSNLFKADLLLCESGGDN 55 (148)
Q Consensus 7 ~~~~~~~-------~~~nGcicc~i~~-dl~~~~~al~~l~~~~~~D~IliEtsG~~ 55 (148)
|+.|++. +.++||.||..+. ++. ..++.++....++|+|+||++|..
T Consensus 54 D~~r~~~aGa~~v~~~s~~~~~~~~~~~~~~--~~~~~~ll~~~~~D~vlVEg~~~~ 108 (169)
T 1xjc_A 54 DSVRHERAGAVATAVEGDGLLQLHLRRPLWR--LDDVLALYAPLRLDLVLVEGYKQE 108 (169)
T ss_dssp ---------CSEEEEEETTEEEEEECCSCCC--HHHHHHHHGGGCCSEEEEECCTTS
T ss_pred hHHHHHhcCCCeEEeccCCEEEEEecccccc--hHHHHHHHHhcCCCEEEEeCCCCC
Confidence 4667664 2478898887631 221 122333333338999999999974
No 216
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=86.28 E-value=0.27 Score=44.05 Aligned_cols=58 Identities=24% Similarity=0.244 Sum_probs=36.4
Q ss_pred CCCEEEEecCCceeee-ee--ccccCceEEEEEeCCCCCCccc------cCCCCcceeeEEEEecCCCC
Q 032030 43 KADLLLCESGGDNLAA-NF--SRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLA 102 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~-~~--~~~~~d~~i~vvDa~~~~~~~~------~~~~qi~~ADivViNK~DL~ 102 (148)
++.+-++.|.|..... .. .-..+|..|+|+|+.++...+. .....++ -++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p--~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIK--PVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCE--EEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC--eEEEEECCCcc
Confidence 3556788888864210 00 0135789999999998754221 0122344 59999999986
No 217
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.28 E-value=0.5 Score=33.20 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=40.5
Q ss_pred CCCEEEEecCCceeeeee----cc---ccCceEEEEEeCC-CCCCc-------ccc-------CCCCcceeeEEEEecCC
Q 032030 43 KADLLLCESGGDNLAANF----SR---ELADYIIYIIDVS-GGDKI-------PRK-------GGPGITQADLLVINKTD 100 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~----~~---~~~d~~i~vvDa~-~~~~~-------~~~-------~~~qi~~ADivViNK~D 100 (148)
+..+.++++.|....... .. ..+|.+++|+|+. ..... ... ....++ -++|+||+|
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~ilv~nK~D 167 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID--ILIACNKSE 167 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC--EEEEEECTT
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCC--EEEEEEchH
Confidence 345677788886421111 01 1268899999987 32111 000 112344 689999999
Q ss_pred CCCchhhhHHHHHHHHH
Q 032030 101 LASAIGADLAVMERDAL 117 (148)
Q Consensus 101 L~~~~~~~l~~~~~~i~ 117 (148)
+.+. ...+.+.+.++
T Consensus 168 l~~~--~~~~~~~~~l~ 182 (193)
T 2ged_A 168 LFTA--RPPSKIKDALE 182 (193)
T ss_dssp STTC--CCHHHHHHHHH
T ss_pred hcCC--CCHHHHHHHHH
Confidence 9887 55555555443
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=86.10 E-value=0.45 Score=37.29 Aligned_cols=89 Identities=17% Similarity=0.114 Sum_probs=51.9
Q ss_pred cCCCEEEEecCCcee--ee-eec--------cccCceEEEEEeCCCCCCccc---cCCCCcceeeEEEEecCCCCCchhh
Q 032030 42 FKADLLLCESGGDNL--AA-NFS--------RELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGA 107 (148)
Q Consensus 42 ~~~D~IliEtsG~~~--~~-~~~--------~~~~d~~i~vvDa~~~~~~~~---~~~~qi~~ADivViNK~DL~~~~~~ 107 (148)
.++|+|+|.|.|... .. .+. -...|.+++|+|+..+.+... .+.+.++ -..+|+||.|.... .
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~-i~gvVlnk~D~~~~--~ 255 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASK-IGTIIITKMDGTAK--G 255 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTCT-TEEEEEECGGGCTT--H
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhhCC-CCEEEEeCCCCCcc--h
Confidence 589999999999764 21 111 124578899999875532211 0111111 14789999998754 2
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 108 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 108 ~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
..+.+.... -+.|+.+++ +|++++.+
T Consensus 256 --g~~~~~~~~--~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 256 --GGALSAVAA--TGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp --HHHHHHHHT--TTCCEEEEE--CSSSTTCE
T ss_pred --HHHHHHHHH--HCcCEEEEe--CCCChhhc
Confidence 233333332 347887777 46766543
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=80.31 E-value=1.5 Score=35.78 Aligned_cols=50 Identities=10% Similarity=0.073 Sum_probs=38.6
Q ss_pred eEEEEecCC--CC-C-chhhhHHHHHHHHHhcCCCCcEEEEEecC---------------------CCCHHHHHHhh
Q 032030 92 DLLVINKTD--LA-S-AIGADLAVMERDALRMRDGGPFIFAQVGW---------------------VIGIIFTLSIT 143 (148)
Q Consensus 92 DivViNK~D--L~-~-~~~~~l~~~~~~i~~~np~a~vi~tSa~~---------------------g~gi~~l~~~~ 143 (148)
-+.++||.| +. + . ..++++.+++++.+|+++++++||+. +.|++.++...
T Consensus 227 ~~y~~Nv~e~~~~~~~~--~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~ 301 (392)
T 1ni3_A 227 VIYLVNMSERDFLRQKN--KYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTG 301 (392)
T ss_dssp EEEEEECCHHHHTTTCC--SSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred eEEEEEecchhhcccch--HHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHH
Confidence 489999988 22 1 3 45778888888878889999999985 57888877654
No 220
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=80.15 E-value=0.44 Score=38.61 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=29.1
Q ss_pred eEEEEecCC--CCC---chhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHH
Q 032030 92 DLLVINKTD--LAS---AIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 137 (148)
Q Consensus 92 DivViNK~D--L~~---~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~ 137 (148)
-+++.||.| +.+ . ..++++.++.++. +++++++||+++.++.
T Consensus 204 vi~v~N~~e~d~~~~~~n--~~~~~v~~~a~~~--g~~vv~iSAk~E~el~ 250 (368)
T 2dby_A 204 VIYVANVAEEDLPDGRGN--PQVEAVRRKALEE--GAEVVVVSARLEAELA 250 (368)
T ss_dssp EEEEEECCGGGTTTCTTC--HHHHHHHHHHHHH--TCEEEEECHHHHHHHH
T ss_pred eEEeccccHHhhcccchh--hHHHHHHHHHHHc--CCeEEEeechhHHHHH
Confidence 588999997 443 3 4566777776654 3799999998744333
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=79.51 E-value=1.1 Score=36.90 Aligned_cols=51 Identities=12% Similarity=-0.044 Sum_probs=33.0
Q ss_pred eEEEEecCCCC---------CchhhhHHHHHHHHHhc---------CCCCcEEEEEe--cCCCCHHHHHHhhh
Q 032030 92 DLLVINKTDLA---------SAIGADLAVMERDALRM---------RDGGPFIFAQV--GWVIGIIFTLSITH 144 (148)
Q Consensus 92 DivViNK~DL~---------~~~~~~l~~~~~~i~~~---------np~a~vi~tSa--~~g~gi~~l~~~~~ 144 (148)
-++|+||.|+. ++ ...+++.+.++++ .+..+++.+|+ .++.|++++.+.+.
T Consensus 178 ~~lV~tkpdlllLDEPtsgLD~--~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 178 FYFVRTKVDSDITNEADGEPQT--FDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp EEEEECCHHHHHHHHHTTCCTT--CCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred eEEEEecCcccccCcccccCCH--HHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 58999999974 22 1222333333322 34568899999 66778999998774
No 222
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=76.85 E-value=1.1 Score=35.52 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=49.4
Q ss_pred hcCCCEEEEecCCceee--ee----------e---ccccCceEEEEEeCCCCCCc-cc--cCCCCcceeeEEEEecCCCC
Q 032030 41 LFKADLLLCESGGDNLA--AN----------F---SRELADYIIYIIDVSGGDKI-PR--KGGPGITQADLLVINKTDLA 102 (148)
Q Consensus 41 ~~~~D~IliEtsG~~~~--~~----------~---~~~~~d~~i~vvDa~~~~~~-~~--~~~~qi~~ADivViNK~DL~ 102 (148)
..++|+|+|.|.|.... .. . .|...|.+++|+|+..+.+. .. .+.+.+. -.-+|+||.|-.
T Consensus 189 ~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~~~~~~~~~-i~GvVltk~d~~ 267 (320)
T 1zu4_A 189 EQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVAD-VSGIILTKMDST 267 (320)
T ss_dssp HTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHHHHHTTTSC-CCEEEEECGGGC
T ss_pred hcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHHHHHHhhcCC-CcEEEEeCCCCC
Confidence 35899999999997431 00 0 13346778899998754221 11 1111221 136899999976
Q ss_pred CchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHH
Q 032030 103 SAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 103 ~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~ 138 (148)
.. .. .+....... +.|+.++.. |++++.
T Consensus 268 ~~--~g--~~~~~~~~~--~~Pi~~i~~--Ge~~~d 295 (320)
T 1zu4_A 268 SK--GG--IGLAIKELL--NIPIKMIGV--GEKVDD 295 (320)
T ss_dssp SC--TT--HHHHHHHHH--CCCEEEEEC--SSSTTC
T ss_pred Cc--hh--HHHHHHHHH--CcCEEEEeC--CCCccc
Confidence 54 21 233333333 357777663 555543
No 223
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=73.83 E-value=1.3 Score=36.69 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=37.3
Q ss_pred EEEEEeCCCCCCc-----cccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHHh-c-CCCCcEEEEEe
Q 032030 68 IIYIIDVSGGDKI-----PRKGGPGITQADLLVINKTDLASAIGADLAVMERDALR-M-RDGGPFIFAQV 130 (148)
Q Consensus 68 ~i~vvDa~~~~~~-----~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~-~-np~a~vi~tSa 130 (148)
+++++|+.++... ........+ -++|+||+|..++ .+++.+.+.+++ + ..+.+|+.+|.
T Consensus 152 v~fI~d~~~~l~~~Dieilk~L~~~~~--vI~Vi~KtD~Lt~--~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 152 LYFIAPTGHSLKSLDLVTMKKLDSKVN--IIPIIAKADAISK--SELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEECCCC---CHHHHHHHHHTCSCSE--EEEEESCGGGSCH--HHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhhCCC--EEEEEcchhccch--HHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 5677777665431 111222333 6999999999998 888888877775 3 35677777774
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=71.16 E-value=1.7 Score=34.55 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=51.1
Q ss_pred cCCCEEEEecCCceee-----eeec----cccCceEEEEEeCCCCCCccccCCC--CcceeeEEEEecCCCCCchhhhHH
Q 032030 42 FKADLLLCESGGDNLA-----ANFS----RELADYIIYIIDVSGGDKIPRKGGP--GITQADLLVINKTDLASAIGADLA 110 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~-----~~~~----~~~~d~~i~vvDa~~~~~~~~~~~~--qi~~ADivViNK~DL~~~~~~~l~ 110 (148)
.++|++++++.|.... ..+. ....|..+.++|+..+.+....... .-...+.+++||.|.....+.
T Consensus 210 ~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~--- 286 (328)
T 3e70_C 210 RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGA--- 286 (328)
T ss_dssp HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHH---
T ss_pred ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhH---
Confidence 4799999999998421 1110 0124667889998776432111000 011236999999997554222
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCHHH
Q 032030 111 VMERDALRMRDGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 111 ~~~~~i~~~np~a~vi~tSa~~g~gi~~ 138 (148)
+....... +.||.+++ +|++++.
T Consensus 287 -~l~~~~~~--~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 287 -ALSISYVI--DAPILFVG--VGQGYDD 309 (328)
T ss_dssp -HHHHHHHH--TCCEEEEE--CSSSTTC
T ss_pred -HHHHHHHH--CCCEEEEe--CCCCccc
Confidence 33334333 36888888 5676654
No 225
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=71.06 E-value=4.8 Score=32.64 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=32.1
Q ss_pred eEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhh
Q 032030 92 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
-+++.||+|..+. ++++.+ ......+++|+.++.|+++|.+..
T Consensus 252 ~i~v~nKid~~~~--eele~l-------~~~~~~~~is~~~e~gLd~Li~~~ 294 (376)
T 4a9a_A 252 AIYVLNKIDSLSI--EELELL-------YRIPNAVPISSGQDWNLDELLQVM 294 (376)
T ss_dssp EEEEEECGGGSCH--HHHHHH-------TTSTTEEECCTTTCTTHHHHHHHH
T ss_pred eEEEEecccccCH--HHHHHH-------hcccchhhhhhhhcccchhHHHHH
Confidence 5889999999877 654433 223356899999999999997653
No 226
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=70.32 E-value=0.67 Score=37.32 Aligned_cols=89 Identities=6% Similarity=-0.099 Sum_probs=51.0
Q ss_pred CEEEEecCCceeeee-------------eccccCceEEEEEeCCCCC---Cc---cccCCCCcceeeEEEEecCCCCCch
Q 032030 45 DLLLCESGGDNLAAN-------------FSRELADYIIYIIDVSGGD---KI---PRKGGPGITQADLLVINKTDLASAI 105 (148)
Q Consensus 45 D~IliEtsG~~~~~~-------------~~~~~~d~~i~vvDa~~~~---~~---~~~~~~qi~~ADivViNK~DL~~~~ 105 (148)
.+.++.|.|...... +.....+..++++++.+.. .+ ........+ -++++||.|.+..
T Consensus 213 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~--~~~v~~k~d~~~~- 289 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRS--FVCYMANELTVHR- 289 (369)
T ss_dssp TCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE--EEEEECTTSCEEE-
T ss_pred CeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCce--EEEEecCCccccc-
Confidence 467888888742211 0112346678888874320 11 111122344 5899999999988
Q ss_pred hhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHH
Q 032030 106 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 138 (148)
Q Consensus 106 ~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~ 138 (148)
.++++..+.+++... ..+.+.++.+..++.+
T Consensus 290 -~~~~~~~~~~~~~~g-~~l~p~~~~~~~~~~~ 320 (369)
T 3ec1_A 290 -TKLEKADSLYANQLG-ELLSPPSKRYAAEFPP 320 (369)
T ss_dssp -EEGGGHHHHHHHHBT-TTBCSSCGGGTTTCCC
T ss_pred -ccHHHHHHHHHHhcC-CccCCCCchhhhhccC
Confidence 777777777765443 3555555555444433
No 227
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=67.08 E-value=13 Score=30.61 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=36.5
Q ss_pred cCCCEEEEecCCceee--eee------c-cccCceEEEEEeCCCCCCccc---cCCCCcceeeEEEEecCCCCCc
Q 032030 42 FKADLLLCESGGDNLA--ANF------S-RELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~--~~~------~-~~~~d~~i~vvDa~~~~~~~~---~~~~qi~~ADivViNK~DL~~~ 104 (148)
.++|+|||.|.|.... ... . -...+..++|+|+..+.+... .+...++. .-+|+||.|....
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l~i-~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPL-TGVVLTKVDGDAR 255 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHSCC-CCEEEECTTSSSC
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccCCC-eEEEEecCCCCcc
Confidence 4899999999996421 000 0 113466788999976643211 11111221 3579999998655
No 228
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=65.62 E-value=6.1 Score=29.57 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=10.7
Q ss_pred eEEEEecCCCCCc
Q 032030 92 DLLVINKTDLASA 104 (148)
Q Consensus 92 DivViNK~DL~~~ 104 (148)
-++|+||+|+.++
T Consensus 154 ~ivv~nK~Dl~~~ 166 (262)
T 3def_A 154 TLLVLTHAQFSPP 166 (262)
T ss_dssp EEEEEECTTCCCS
T ss_pred EEEEEeCcccCCC
Confidence 4899999999643
No 229
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=63.70 E-value=5.9 Score=29.76 Aligned_cols=61 Identities=11% Similarity=0.212 Sum_probs=33.2
Q ss_pred CCEEEEecCCceeeeee------------ccccCceEEEEEeCCCCC-C-cc----cc----CCCCcceeeEEEEecCCC
Q 032030 44 ADLLLCESGGDNLAANF------------SRELADYIIYIIDVSGGD-K-IP----RK----GGPGITQADLLVINKTDL 101 (148)
Q Consensus 44 ~D~IliEtsG~~~~~~~------------~~~~~d~~i~vvDa~~~~-~-~~----~~----~~~qi~~ADivViNK~DL 101 (148)
..+.++.|.|..-.... ....+|.+++|+|+.... . .. .. ....+..--++|+||+|+
T Consensus 87 ~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl 166 (270)
T 1h65_A 87 FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF 166 (270)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred eEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECccc
Confidence 35788888886421111 012468889997764321 1 00 00 011111226999999999
Q ss_pred CCc
Q 032030 102 ASA 104 (148)
Q Consensus 102 ~~~ 104 (148)
.++
T Consensus 167 ~~~ 169 (270)
T 1h65_A 167 SPP 169 (270)
T ss_dssp CCG
T ss_pred CCc
Confidence 875
No 230
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=63.49 E-value=3.4 Score=29.64 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=21.6
Q ss_pred CCC----eeeeeccchhhc-----hHHHHHhhhhc---CCCEEEEecCCc
Q 032030 17 GGC----PHAAIREDISIN-----LGPLEELSNLF---KADLLLCESGGD 54 (148)
Q Consensus 17 nGc----icc~i~~dl~~~-----~~al~~l~~~~---~~D~IliEtsG~ 54 (148)
+|| +||..+..+... ...+.++..+. ++|+++||+.+.
T Consensus 62 ~G~~~v~i~~~~~~~~~~~~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~ 111 (174)
T 1np6_A 62 AGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKH 111 (174)
T ss_dssp HTCSEEEEECSSEEEEEEECSSSCCCCHHHHHHHSCGGGCSEEEEESCSS
T ss_pred CCcceeecccchhheeeeeccCCchhhHHHHHHhcCCCcchHHHHHHHhh
Confidence 699 788654322110 02233333332 469999999885
No 231
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=62.53 E-value=3 Score=29.50 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=36.1
Q ss_pred cCCCEEEEecCCceeeeee-ccccCceEEEEEeCCCCCC-cc------ccC---CCCcceeeEEEEecCCCCCc
Q 032030 42 FKADLLLCESGGDNLAANF-SRELADYIIYIIDVSGGDK-IP------RKG---GPGITQADLLVINKTDLASA 104 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~~~~-~~~~~d~~i~vvDa~~~~~-~~------~~~---~~qi~~ADivViNK~DL~~~ 104 (148)
..+|+|+|++.|....... .-..+|.++.++.+..... .. ... .+.++. .+|+||+|--+.
T Consensus 74 ~~yD~viiD~~~~~~~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~vv~N~~~~~~~ 145 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEA--RFLITRKIEMAT 145 (206)
T ss_dssp TTSSEEEEECCSSSSHHHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEE--EEEECSBCTTEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcE--EEEEeccCCCch
Confidence 3699999999986522111 1134788888888765531 00 001 123343 899999996443
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=62.44 E-value=17 Score=30.72 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=49.6
Q ss_pred hcCCCEEEEecCCceee-----ee----------eccccCceEEEEEeCCCCCCccc---cCCCCcceeeEEEEecCCCC
Q 032030 41 LFKADLLLCESGGDNLA-----AN----------FSRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLA 102 (148)
Q Consensus 41 ~~~~D~IliEtsG~~~~-----~~----------~~~~~~d~~i~vvDa~~~~~~~~---~~~~qi~~ADivViNK~DL~ 102 (148)
..++|+|+|+|.|.... .. +.+..-+.+++++|+..+.+... .+...+ .-+.+++||.|-.
T Consensus 373 ~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~-~itgvIlTKLD~t 451 (503)
T 2yhs_A 373 ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-GLTGITLTKLDGT 451 (503)
T ss_dssp HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHT-CCSEEEEECGGGC
T ss_pred hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhc-CCCEEEEEcCCCc
Confidence 45899999999998521 00 11111345788899877633111 111001 1258999999975
Q ss_pred CchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHH
Q 032030 103 SAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 139 (148)
Q Consensus 103 ~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l 139 (148)
...+ .+...+.... .||.++. +|++++.|
T Consensus 452 akgG----~~lsi~~~~~--~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 452 AKGG----VIFSVADQFG--IPIRYIG--VGERIEDL 480 (503)
T ss_dssp SCCT----HHHHHHHHHC--CCEEEEE--CSSSGGGE
T ss_pred cccc----HHHHHHHHHC--CCEEEEe--cCCChhhc
Confidence 4422 2333333333 5777765 46776543
No 233
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=62.32 E-value=2.4 Score=32.88 Aligned_cols=36 Identities=8% Similarity=-0.012 Sum_probs=24.1
Q ss_pred cCCCEEEEecCCcee-e-eeeccccCceEEEEEeCCCC
Q 032030 42 FKADLLLCESGGDNL-A-ANFSRELADYIIYIIDVSGG 77 (148)
Q Consensus 42 ~~~D~IliEtsG~~~-~-~~~~~~~~d~~i~vvDa~~~ 77 (148)
..+|+|||++.+... . +......+|.++.|+.+...
T Consensus 212 ~~yD~VIIDtpp~~~~~d~~~l~~~ad~vilV~~~~~~ 249 (299)
T 3cio_A 212 DHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLN 249 (299)
T ss_dssp HHCSEEEEECCCTTTCTHHHHHGGGCSEEEEEEETTTS
T ss_pred hCCCEEEEcCCCCchhHHHHHHHHHCCEEEEEEcCCCC
Confidence 369999999998642 1 11223457888888876544
No 234
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=61.46 E-value=7.4 Score=32.03 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=46.7
Q ss_pred cCCCEEEEecCCceee-ee-e------c-cccCceEEEEEeCCCCCCccc---cCCCCcceeeEEEEecCCCCCchhhhH
Q 032030 42 FKADLLLCESGGDNLA-AN-F------S-RELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADL 109 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~-~~-~------~-~~~~d~~i~vvDa~~~~~~~~---~~~~qi~~ADivViNK~DL~~~~~~~l 109 (148)
.++|+|+|.|.|.... .. + . ....|.+++|+|+..+.+... .+.+.++ -+-+|+||.|-... ..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~-i~GVIlTKlD~~~~--~g- 254 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-VTGLVLTKLDGDAR--GG- 254 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTC-CCEEEEESGGGCSS--CH-
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCC-ceEEEEeCcCCccc--HH-
Confidence 5899999999996421 10 1 0 012567789999876532211 1111121 15789999997654 21
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCHH
Q 032030 110 AVMERDALRMRDGGPFIFAQVGWVIGII 137 (148)
Q Consensus 110 ~~~~~~i~~~np~a~vi~tSa~~g~gi~ 137 (148)
.+....... +.||..+. .|+.++
T Consensus 255 -~alsi~~~~--g~PI~flg--~Ge~~~ 277 (425)
T 2ffh_A 255 -AALSARHVT--GKPIYFAG--VSEKPE 277 (425)
T ss_dssp -HHHHHHHHH--CCCEEEEE--CSSSGG
T ss_pred -HHHHHHHHH--CCCEEEEe--CCCChh
Confidence 222222222 35676665 344444
No 235
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=57.62 E-value=5.7 Score=28.24 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=26.8
Q ss_pred CCChhhhhhhhhcCCCeee---eeccchhhchHHHHHhhhhcCCCEEEEecCC
Q 032030 4 GALPEERIRAVETGGCPHA---AIREDISINLGPLEELSNLFKADLLLCESGG 53 (148)
Q Consensus 4 ~~~~~~~~~~~~~nGcicc---~i~~dl~~~~~al~~l~~~~~~D~IliEtsG 53 (148)
|...++++.+ .|+-.. .+.||......++.+.....+.|+|+ |||
T Consensus 42 g~~L~~~L~~---~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVi--ttG 89 (178)
T 3iwt_A 42 GDIIKQLLIE---NGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVII--STG 89 (178)
T ss_dssp HHHHHHHHHH---TTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEE--EES
T ss_pred HHHHHHHHHH---CCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEE--ecC
Confidence 3344555555 577654 45677755455665544445788888 566
No 236
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=56.94 E-value=12 Score=28.78 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=35.2
Q ss_pred CCCEEEEecCCceee--eeeccccCceEEEEEeCCCCCC--cc------ccCCCCcceeeEEEEecCCCCCc
Q 032030 43 KADLLLCESGGDNLA--ANFSRELADYIIYIIDVSGGDK--IP------RKGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 43 ~~D~IliEtsG~~~~--~~~~~~~~d~~i~vvDa~~~~~--~~------~~~~~qi~~ADivViNK~DL~~~ 104 (148)
.+|+|||.+...... +......+|.++.|+.+..... +. ......+ --+|+||+|....
T Consensus 201 ~yD~VIIDtpp~~~~~da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~---~GvVlN~v~~~~~ 269 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPV---KGVILNSIFRRAS 269 (286)
T ss_dssp HCSEEEEECCCTTTCTHHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCC---CEEEEEEECCCCC
T ss_pred CCCEEEEcCCCCcchHHHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCE---EEEEEcCcccccc
Confidence 699999999886422 1112346788999998765421 00 0011112 2688899986543
No 237
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=55.95 E-value=12 Score=29.36 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=34.1
Q ss_pred CCCCChhhhhhh-hhcCCCeeeeeccchh---hchHHHHHhhhhcCCCEEEEecCCc
Q 032030 2 RNGALPEERIRA-VETGGCPHAAIREDIS---INLGPLEELSNLFKADLLLCESGGD 54 (148)
Q Consensus 2 ~~~~~~~~~~~~-~~~nGcicc~i~~dl~---~~~~al~~l~~~~~~D~IliEtsG~ 54 (148)
.+|.+|-+|+++ ++..+++-+|...-+. +...++.+|.+ .++|.|| |||-
T Consensus 135 ~dg~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~-lGvdrIL--TSG~ 188 (287)
T 3iwp_A 135 EDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLT-LGFERVL--TSGC 188 (287)
T ss_dssp TTSCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHH-HTCSEEE--ECTT
T ss_pred CCCCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHH-cCCCEEE--CCCC
Confidence 478999999997 3444666666643322 23567777665 4999999 7885
No 238
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=51.97 E-value=21 Score=28.70 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=25.9
Q ss_pred eEEEEecCCCC--CchhhhHHHHHHHHHhcCCCCcEEEEEecC
Q 032030 92 DLLVINKTDLA--SAIGADLAVMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 92 DivViNK~DL~--~~~~~~l~~~~~~i~~~np~a~vi~tSa~~ 132 (148)
-+++.||.|.- .. .-++++.++..+. +++++++||+.
T Consensus 202 vi~v~N~~e~~~~~n--~~~~~v~~~~~~~--~~~~i~~sA~~ 240 (363)
T 1jal_A 202 TMYIANVNEDGFENN--PYLDRVREIAAKE--GAVVVPVCAAI 240 (363)
T ss_dssp EEEEEECCTTCSSSC--HHHHHHHHHHHHT--TCEEEEECHHH
T ss_pred EEEEEeccccccccc--HHHHHHHHHHHHc--CCCEEEechHH
Confidence 69999999864 23 4456666666543 47899999764
No 239
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=51.65 E-value=20 Score=27.11 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=33.7
Q ss_pred CCCCChhhhhhhhh--cCCCeeeeec--cch--hhchHHHHHhhhhcCCCEEEEecCCce
Q 032030 2 RNGALPEERIRAVE--TGGCPHAAIR--EDI--SINLGPLEELSNLFKADLLLCESGGDN 55 (148)
Q Consensus 2 ~~~~~~~~~~~~~~--~nGcicc~i~--~dl--~~~~~al~~l~~~~~~D~IliEtsG~~ 55 (148)
.+|.||-++++++- ..|+.+-+=| |.. .+...++.+|.+ .++|.|+ |||-.
T Consensus 100 ~dg~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~-lGv~rIL--TSG~~ 156 (224)
T 2bdq_A 100 SNNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVA-LGFTRIL--LHGSS 156 (224)
T ss_dssp TTSSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHH-TTCCEEE--ECSCS
T ss_pred CCCCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHH-cCCCEEE--CCCCC
Confidence 47999999999742 3566544333 222 333567776665 4899999 99954
No 240
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=51.03 E-value=8.5 Score=29.34 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=30.2
Q ss_pred ceEEEEEeCC-CCCCcc-----ccCCCCcceeeEEEEecCCCCCchhhhHHHHHHHHH
Q 032030 66 DYIIYIIDVS-GGDKIP-----RKGGPGITQADLLVINKTDLASAIGADLAVMERDAL 117 (148)
Q Consensus 66 d~~i~vvDa~-~~~~~~-----~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~ 117 (148)
+..+.++|.. ++.+.. ...... ..-++|+||+|..++ .+++...+.++
T Consensus 113 l~~lllldep~~gL~~lD~~~l~~L~~~--~~vI~Vi~K~D~lt~--~e~~~~k~~i~ 166 (270)
T 3sop_A 113 HCCLYFISPTGHSLRPLDLEFMKHLSKV--VNIIPVIAKADTMTL--EEKSEFKQRVR 166 (270)
T ss_dssp CEEEEEECCCSSSCCHHHHHHHHHHHTT--SEEEEEETTGGGSCH--HHHHHHHHHHH
T ss_pred eeeeEEEecCCCcCCHHHHHHHHHHHhc--CcEEEEEeccccCCH--HHHHHHHHHHH
Confidence 4557778854 553311 111122 457999999999998 77776665554
No 241
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=49.13 E-value=2 Score=32.92 Aligned_cols=61 Identities=11% Similarity=0.269 Sum_probs=33.4
Q ss_pred cCCCEEEEecCCcee-e-eeeccccCceEEEEEeCCCCCC--cc---c-cCCCCcceeeEEEEecCCCCC
Q 032030 42 FKADLLLCESGGDNL-A-ANFSRELADYIIYIIDVSGGDK--IP---R-KGGPGITQADLLVINKTDLAS 103 (148)
Q Consensus 42 ~~~D~IliEtsG~~~-~-~~~~~~~~d~~i~vvDa~~~~~--~~---~-~~~~qi~~ADivViNK~DL~~ 103 (148)
..+|+|||++.+... . +......+|.++.|+.+..... +. . ......+. --+|+||+|...
T Consensus 190 ~~yD~VIIDtpp~~~~~d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~-~GvVlN~~~~~~ 258 (271)
T 3bfv_A 190 MNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKL-LGVVLNRMPKDK 258 (271)
T ss_dssp HHCSEEEEECCCTTTCSHHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEE-EEEEEEEECC--
T ss_pred hCCCEEEEeCCCCchHHHHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCE-EEEEEeCCcCCC
Confidence 369999999998642 1 1111134688888888765431 10 0 01112221 237899998643
No 242
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=48.09 E-value=23 Score=27.33 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=33.6
Q ss_pred CCCCChhhhhhhhh--cCCCeeeeec--cchhhchHHHHHhhhhcCCCEEEEecCCce
Q 032030 2 RNGALPEERIRAVE--TGGCPHAAIR--EDISINLGPLEELSNLFKADLLLCESGGDN 55 (148)
Q Consensus 2 ~~~~~~~~~~~~~~--~nGcicc~i~--~dl~~~~~al~~l~~~~~~D~IliEtsG~~ 55 (148)
.+|.||-++++++- ..|+.+-+=| |...+...++.+|.+ .++|.|+ |||-.
T Consensus 97 ~dg~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~-lG~~rIL--TSG~~ 151 (256)
T 1twd_A 97 VDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAE-LGIARVL--TSGQK 151 (256)
T ss_dssp TTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHH-HTCCEEE--ECTTS
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHH-cCCCEEE--CCCCC
Confidence 47999999999742 3566644333 222233566766665 4899999 99964
No 243
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=47.36 E-value=33 Score=25.75 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=22.6
Q ss_pred cCCCEEEEecCCceeeeee-ccccCceEEEEEeCC
Q 032030 42 FKADLLLCESGGDNLAANF-SRELADYIIYIIDVS 75 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~~~~-~~~~~d~~i~vvDa~ 75 (148)
..+|+|||++.+.....+. .-..+|.++.++.+.
T Consensus 102 ~~yD~viiD~p~~~~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 102 AECDFILIDTPGGDSAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HHCSEEEEECCSSCCHHHHHHHHTCSEEEEEEESS
T ss_pred hcCCEEEEcCCCCccHHHHHHHHHCCEEEEEEcCC
Confidence 3699999999986422111 113578888888764
No 244
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=46.09 E-value=13 Score=26.51 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=28.2
Q ss_pred CCChhhhhhhhhcCCCe--eeeeccchhhchHHHHHhhhhcCCCEEEEecCC
Q 032030 4 GALPEERIRAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCESGG 53 (148)
Q Consensus 4 ~~~~~~~~~~~~~nGci--cc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG 53 (148)
|...+++++++...|+. ...+.||.....+++.++....+.|+|| |||
T Consensus 27 ~~~l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVi--ttG 76 (178)
T 2pbq_A 27 GKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLIL--TTG 76 (178)
T ss_dssp HHHHHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEE--EES
T ss_pred HHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEE--ECC
Confidence 34445555533346764 3355677766556676665433689888 566
No 245
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=45.38 E-value=21 Score=27.49 Aligned_cols=85 Identities=8% Similarity=0.069 Sum_probs=46.6
Q ss_pred cCCCEEEEecCCceeee---------eeccccCceEEEEEeCCCCCC-cc---ccCCCCcceeeEEEEecCCCCCchhhh
Q 032030 42 FKADLLLCESGGDNLAA---------NFSRELADYIIYIIDVSGGDK-IP---RKGGPGITQADLLVINKTDLASAIGAD 108 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~~---------~~~~~~~d~~i~vvDa~~~~~-~~---~~~~~qi~~ADivViNK~DL~~~~~~~ 108 (148)
.++|+|++.|.|..... .+.+...+..++|+|+.++.. .. ..+. .+. -.-+|+||.|.... ..
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~-~~giVltk~D~~~~--~g 256 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS-SVP-VNQYIFTKIDETTS--LG 256 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS-SSC-CCEEEEECTTTCSC--CH
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh-cCC-CCEEEEeCCCcccc--hh
Confidence 47999999999975211 011112355688888876522 11 1111 222 24678899998765 22
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCCCH
Q 032030 109 LAVMERDALRMRDGGPFIFAQVGWVIGI 136 (148)
Q Consensus 109 l~~~~~~i~~~np~a~vi~tSa~~g~gi 136 (148)
.+....... +.|+.+++ .|+++
T Consensus 257 --~~~~~~~~~--~~pi~~i~--~ge~v 278 (296)
T 2px0_A 257 --SVFNILAES--KIGVGFMT--NGQNV 278 (296)
T ss_dssp --HHHHHHHTC--SCCCSEEC--CSSCT
T ss_pred --HHHHHHHHH--CcCEEEEE--CCCCC
Confidence 344444433 35665554 34444
No 246
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=45.08 E-value=9.8 Score=30.13 Aligned_cols=48 Identities=8% Similarity=0.094 Sum_probs=35.8
Q ss_pred CCcceeeEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEecCCCCHHHHHHhhh
Q 032030 86 PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 144 (148)
Q Consensus 86 ~qi~~ADivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~~g~gi~~l~~~~~ 144 (148)
..+| .||++|-|..++ + +.+..++. +.|++.|++.+...+..+..++.
T Consensus 79 ~~~P---~IIltrg~~~pe--e----lie~A~~~--~IPVL~T~~~ts~~~~~l~~~l~ 126 (314)
T 1ko7_A 79 PETP---AIIVTRDLEPPE--E----LIEAAKEH--ETPLITSKIATTQLMSRLTTFLE 126 (314)
T ss_dssp TTCC---CEEECTTCCCCH--H----HHHHHHHT--TCCEEECCSCHHHHHHHHHHHHH
T ss_pred CCCC---EEEEeCCCCCCH--H----HHHHHHHC--CCeEEEECCchhHHHHHHHHHHH
Confidence 3556 999999999866 4 34444443 78999999998888888876654
No 247
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=44.59 E-value=0.98 Score=36.35 Aligned_cols=37 Identities=3% Similarity=-0.229 Sum_probs=26.0
Q ss_pred eEEEEecCCCCCchhhhHHHHHHHHHhcCCCCcEEEEEec
Q 032030 92 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVG 131 (148)
Q Consensus 92 DivViNK~DL~~~~~~~l~~~~~~i~~~np~a~vi~tSa~ 131 (148)
-++++||.|.+.. .++++..+.+++.... .+.+.++.
T Consensus 276 ~~~v~nk~d~~~~--~~~~~~~~~~~~~~g~-~l~p~~~~ 312 (368)
T 3h2y_A 276 FTCHFSNRLTIHR--TKLEKADELYKNHAGD-LLSPPTPE 312 (368)
T ss_dssp EEEEECTTSCEEE--EEHHHHHHHHHHHBTT-TBCSSCHH
T ss_pred EEEEecCcccccc--ccHHHHHHHHHHHhCC-ccCCCchh
Confidence 4899999999988 8888888877754332 34444443
No 248
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=42.55 E-value=27 Score=25.08 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=38.5
Q ss_pred CCCEEEEecCCceeeeee-ccccCceEEEEEeCCCCCC-----c---cccCCCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 43 KADLLLCESGGDNLAANF-SRELADYIIYIIDVSGGDK-----I---PRKGGPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~-~~~~~d~~i~vvDa~~~~~-----~---~~~~~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
.+|+|+|.+.+..-.... .-..+|.++.++.+....- . ......... --.+|+||++-... ...+.++
T Consensus 118 ~yD~viiD~p~~~~~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~N~~~~~~~--~~~~~~~ 194 (245)
T 3ea0_A 118 FYDYIIVDFGASIDHVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPIS-RIEIILNRADTNSR--ITSDEIE 194 (245)
T ss_dssp HCSEEEEEEESSCCTTHHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCS-CEEEEEESTTSCTT--SCHHHHH
T ss_pred hCCEEEEeCCCCCchHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCcc-ceEEEEecCCCCCC--CCHHHHH
Confidence 799999999885421111 1135788888887643210 0 001111011 13699999997655 3334454
Q ss_pred HHH
Q 032030 114 RDA 116 (148)
Q Consensus 114 ~~i 116 (148)
+.+
T Consensus 195 ~~~ 197 (245)
T 3ea0_A 195 KVI 197 (245)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 249
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=39.36 E-value=33 Score=25.64 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=34.9
Q ss_pred cCCCEEEEecCCceee---eeeccccCceEEEEEeCCCCCC--cc-------c---cCCCCcceeeEEEEecCCCCCc
Q 032030 42 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDK--IP-------R---KGGPGITQADLLVINKTDLASA 104 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~---~~~~~~~~d~~i~vvDa~~~~~--~~-------~---~~~~qi~~ADivViNK~DL~~~ 104 (148)
..+|+|+|.+.+..-. ..+ ..+|.++.++.+....- .. . .+.+.++. --+|+||.|-...
T Consensus 153 ~~yD~IiiD~pp~~~~~~~~~l--~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~-~gvv~n~~~~~~~ 227 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSVYTNNAI--VASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDM-IGFVPYLVDTDSA 227 (298)
T ss_dssp GGCSEEEEEECSSCSHHHHHHH--HHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEE-EEEEEEESCTTCH
T ss_pred cCCCEEEEECCCCccHHHHHHH--HHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEEEEEEECCCcH
Confidence 4799999999886421 112 24788888888754421 00 0 01122221 2489999997654
No 250
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=36.67 E-value=19 Score=25.28 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=27.5
Q ss_pred CCChhhhhhhhhcCCCee---eeeccchhhchHHHHHhhhhcCCCEEEEecCC
Q 032030 4 GALPEERIRAVETGGCPH---AAIREDISINLGPLEELSNLFKADLLLCESGG 53 (148)
Q Consensus 4 ~~~~~~~~~~~~~nGcic---c~i~~dl~~~~~al~~l~~~~~~D~IliEtsG 53 (148)
|...++++++ .|+.. ..+.+|.....+++.+..++.+.|+|+ |||
T Consensus 23 ~~~l~~~l~~---~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVi--ttG 70 (164)
T 2is8_A 23 HLAIREVLAG---GPFEVAAYELVPDEPPMIKKVLRLWADREGLDLIL--TNG 70 (164)
T ss_dssp HHHHHHHHTT---SSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEE--EES
T ss_pred HHHHHHHHHH---CCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEE--EcC
Confidence 3444555554 57753 356788766566776665433689887 566
No 251
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=34.26 E-value=23 Score=25.07 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=26.2
Q ss_pred CCChhhhhhhhhcCCCeee---eeccchhhchHHHHHhhhhcCCCEEEEecCC
Q 032030 4 GALPEERIRAVETGGCPHA---AIREDISINLGPLEELSNLFKADLLLCESGG 53 (148)
Q Consensus 4 ~~~~~~~~~~~~~nGcicc---~i~~dl~~~~~al~~l~~~~~~D~IliEtsG 53 (148)
|...++++++ .|+... .+.+|.....+++.++.++.+.|+|+ |||
T Consensus 30 ~~~l~~~L~~---~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVi--ttG 77 (172)
T 1mkz_A 30 GHYLRDSAQE---AGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVL--ITG 77 (172)
T ss_dssp HHHHHHHHHH---TTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEE--EES
T ss_pred HHHHHHHHHH---CCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEE--eCC
Confidence 3344555554 476533 45677765556666655433589887 565
No 252
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=31.27 E-value=17 Score=25.61 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=24.7
Q ss_pred CCChhhhhhhhhcCCCee---eeeccchhhchHHHHHhhhhcCCCEEEEecCC
Q 032030 4 GALPEERIRAVETGGCPH---AAIREDISINLGPLEELSNLFKADLLLCESGG 53 (148)
Q Consensus 4 ~~~~~~~~~~~~~nGcic---c~i~~dl~~~~~al~~l~~~~~~D~IliEtsG 53 (148)
|...+++++. .|+.. ..+.||.....+++.+..+..+.|+|+ |||
T Consensus 33 ~~~l~~~L~~---~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVi--ttG 80 (169)
T 1y5e_A 33 GQLLHELLKE---AGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVL--TNG 80 (169)
T ss_dssp HHHHHHHHHH---HTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEE--EEC
T ss_pred HHHHHHHHHH---CCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEE--EcC
Confidence 3344455554 36643 345677655555666555423678777 555
No 253
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=29.98 E-value=30 Score=24.21 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=21.6
Q ss_pred CCeee---eeccchhhchHHHHHhhhhcCCCEEEEecCC
Q 032030 18 GCPHA---AIREDISINLGPLEELSNLFKADLLLCESGG 53 (148)
Q Consensus 18 Gcicc---~i~~dl~~~~~al~~l~~~~~~D~IliEtsG 53 (148)
|+... .+.||.....+++.+..+..+.|+|+ |||
T Consensus 43 G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVi--ttG 79 (167)
T 1uuy_A 43 GAKVVATAVVPDEVERIKDILQKWSDVDEMDLIL--TLG 79 (167)
T ss_dssp SEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEE--EES
T ss_pred CcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEE--ECC
Confidence 77533 45777766556666655434789888 666
No 254
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=28.80 E-value=44 Score=25.01 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=48.7
Q ss_pred cCCCEEEEecCCcee-eee-------eccccCceEEEEEeCCCCCC------ccccCCCCcceeeEEEEecCCCCCchhh
Q 032030 42 FKADLLLCESGGDNL-AAN-------FSRELADYIIYIIDVSGGDK------IPRKGGPGITQADLLVINKTDLASAIGA 107 (148)
Q Consensus 42 ~~~D~IliEtsG~~~-~~~-------~~~~~~d~~i~vvDa~~~~~------~~~~~~~qi~~ADivViNK~DL~~~~~~ 107 (148)
.++|+++||++|-.. +.. +......-+|.|+++..+.- ........++ --+|+||++-...
T Consensus 130 ~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~--~GvIlN~v~~~~~--- 204 (242)
T 3qxc_A 130 KTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLD--YKIAINLKGNNTA--- 204 (242)
T ss_dssp GTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHHHHHHHHHHHTSSSC--EEEEECCCTTCCH---
T ss_pred hcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCC--EEEEEeCCCCccc---
Confidence 479999999998532 210 00112233688888765510 0011123455 5789999985432
Q ss_pred hHHHHHHHHHhc--CCCCcEEEEEecCCCCHHHHHHhh
Q 032030 108 DLAVMERDALRM--RDGGPFIFAQVGWVIGIIFTLSIT 143 (148)
Q Consensus 108 ~l~~~~~~i~~~--np~a~vi~tSa~~g~gi~~l~~~~ 143 (148)
..+...-++++. ++..++++.- ..++.|.+.+
T Consensus 205 ~~~~~~p~le~~~~~~~~~~~~~~----~~~~~l~~~~ 238 (242)
T 3qxc_A 205 FHSISLPYIELFNTRSNNPIVIFQ----QSLKVLMSFA 238 (242)
T ss_dssp HHHHTHHHHHHHHHHCSSCCEEGG----GCHHHHHHHH
T ss_pred hhhhhHHHHHHhcCcccCCceecc----ccHHHHHHHH
Confidence 223333444332 3456665532 4566666543
No 255
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=28.66 E-value=32 Score=24.59 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=21.4
Q ss_pred CCCeee---eeccchhhchHHHHHhhhhcCCCEEEEecCC
Q 032030 17 GGCPHA---AIREDISINLGPLEELSNLFKADLLLCESGG 53 (148)
Q Consensus 17 nGcicc---~i~~dl~~~~~al~~l~~~~~~D~IliEtsG 53 (148)
.|+... .+.||.....+++.+.+++.+.|+|+ |||
T Consensus 52 ~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVi--ttG 89 (178)
T 2pjk_A 52 NGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVII--STG 89 (178)
T ss_dssp TTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEE--EES
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEE--ECC
Confidence 576533 45677765555666655433589888 666
No 256
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=27.84 E-value=1.3e+02 Score=25.15 Aligned_cols=50 Identities=12% Similarity=-0.062 Sum_probs=27.1
Q ss_pred eEEEEecCCCCCchh--------hhHHHHHHHHHhcCCCCcEEEEEe--cCCCCHHHHHHh
Q 032030 92 DLLVINKTDLASAIG--------ADLAVMERDALRMRDGGPFIFAQV--GWVIGIIFTLSI 142 (148)
Q Consensus 92 DivViNK~DL~~~~~--------~~l~~~~~~i~~~np~a~vi~tSa--~~g~gi~~l~~~ 142 (148)
.-+|+|+++-..... ....+..+.+++..+ .++..+-. .+-.|++.|-+.
T Consensus 522 ~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~v~~iP~~~~e~~g~~~l~~~ 581 (589)
T 1ihu_A 522 WGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHA-SRVALVPVLASEPTGIDKLKQL 581 (589)
T ss_dssp CEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTTC-SSEEEEECCSSCCCSHHHHHHH
T ss_pred CEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhcC-CcEEEccCCCCCCCCHHHHHHH
Confidence 468899988642100 111233355666664 46655544 445588877654
No 257
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=27.31 E-value=37 Score=24.98 Aligned_cols=93 Identities=11% Similarity=0.031 Sum_probs=45.3
Q ss_pred cCCCEEEEecCCce-ee--ee-----eccccCceEEEEEeCCCCCC--c----cccCCCCcceeeEEEEecCCCCCchhh
Q 032030 42 FKADLLLCESGGDN-LA--AN-----FSRELADYIIYIIDVSGGDK--I----PRKGGPGITQADLLVINKTDLASAIGA 107 (148)
Q Consensus 42 ~~~D~IliEtsG~~-~~--~~-----~~~~~~d~~i~vvDa~~~~~--~----~~~~~~qi~~ADivViNK~DL~~~~~~ 107 (148)
.++|+++||++|-. .+ .. +......-+|.|+++..+.- . .......++. --+|+||++--..
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i-~GvIlN~~~~~~~--- 184 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKL-AGWIANCNDSNIK--- 184 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCE-EEEEEEECCTTCS---
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcE-EEEEEECcCCcch---
Confidence 47999999998742 11 10 11111223678888765421 0 0001122221 2588999875322
Q ss_pred hHHHHHHHHHhc--CCCCcEEEEEecCCCCHHHHHHh
Q 032030 108 DLAVMERDALRM--RDGGPFIFAQVGWVIGIIFTLSI 142 (148)
Q Consensus 108 ~l~~~~~~i~~~--np~a~vi~tSa~~g~gi~~l~~~ 142 (148)
..+...+.+++. -|-.-+++ .-..+..+++.
T Consensus 185 ~~~~~~~~l~~~~g~pvLG~iP----~~~~~~~~~~~ 217 (228)
T 3of5_A 185 YIDEQINTIEELSGYKCSAKIS----RNADYLDFIDL 217 (228)
T ss_dssp CHHHHHHHHHHHHSCCCSEEEE----SSCCHHHHHHH
T ss_pred hhHHHHHHHHHhhCCCEEEECC----CchHhhhhcCH
Confidence 112233444432 35555666 23555555543
No 258
>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis}
Probab=25.98 E-value=27 Score=24.63 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=26.7
Q ss_pred CCCCCChhhhhhhhhcCCCeeeeeccchhhchHHHHH--hhhhcCCCEEEEecCCce
Q 032030 1 MRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE--LSNLFKADLLLCESGGDN 55 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~~nGcicc~i~~dl~~~~~al~~--l~~~~~~D~IliEtsG~~ 55 (148)
++||.|+-+.+|... .|. +|+ ..+|.+ ...-...++.++|+.|..
T Consensus 20 I~~G~i~~~~l~k~r------it~-~dL---~~~LR~~gi~~l~dV~~AiLE~nG~i 66 (153)
T 3c6f_A 20 IRKGELQYKVMKKNK------IDI-NQL---QSMLRQAGSFSIQEVEYAIMETNGMV 66 (153)
T ss_dssp EETTEECHHHHHHTT------CCH-HHH---HHHHHHTTCCSGGGEEEEEECTTSCE
T ss_pred EECCEEcHHHHhHcC------CCH-HHH---HHHHHHcCCCCHHHhcEEEEeCCCCE
Confidence 478999999988732 111 344 222222 111126899999999964
No 259
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=25.41 E-value=54 Score=24.66 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=22.0
Q ss_pred cCCCEEEEecCCce-ee--ee-e-----ccccCceEEEEEeCCCC
Q 032030 42 FKADLLLCESGGDN-LA--AN-F-----SRELADYIIYIIDVSGG 77 (148)
Q Consensus 42 ~~~D~IliEtsG~~-~~--~~-~-----~~~~~d~~i~vvDa~~~ 77 (148)
.++|+++||++|-. .+ .. + ......-+|.|+|+..+
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g 169 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLG 169 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTT
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCc
Confidence 37999999999853 11 11 1 11233446888887654
No 260
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=24.53 E-value=77 Score=22.42 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=37.7
Q ss_pred hcCCCEEEEecCCceeeeee-ccccCceEEEEEeCCCCCC--c---cccC-CCCcceeeEEEEecCCCCCchhhhHHHHH
Q 032030 41 LFKADLLLCESGGDNLAANF-SRELADYIIYIIDVSGGDK--I---PRKG-GPGITQADLLVINKTDLASAIGADLAVME 113 (148)
Q Consensus 41 ~~~~D~IliEtsG~~~~~~~-~~~~~d~~i~vvDa~~~~~--~---~~~~-~~qi~~ADivViNK~DL~~~~~~~l~~~~ 113 (148)
...+|+|+|.+.+..-..+. .-..+|.++.++.+....- . .... ...++ --.+|+||.+ +. ...+.+.
T Consensus 129 ~~~yD~viiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~-~~~~v~N~~~--~~--~~~~~~~ 203 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEHLTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIK-KVRYVINKVR--NI--KEEKLIK 203 (254)
T ss_dssp HTCCSEEEEEECTTCTTCCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCS-CEEEEEEEEC--CH--HHHHHHH
T ss_pred cCCCCEEEEeCCCcccHHHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCc-cEEEEEeCCC--Ch--hHHHHHH
Confidence 35899999999875321111 1145788888888643210 0 0000 00111 1368999998 33 3344444
Q ss_pred HHH
Q 032030 114 RDA 116 (148)
Q Consensus 114 ~~i 116 (148)
+.+
T Consensus 204 ~~~ 206 (254)
T 3kjh_A 204 KHL 206 (254)
T ss_dssp HHS
T ss_pred HHh
Confidence 444
No 261
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=23.93 E-value=45 Score=24.23 Aligned_cols=46 Identities=22% Similarity=0.196 Sum_probs=27.6
Q ss_pred CCCChhhhhhhhhcCCCe-----eeeeccchhhchHHHHHhhhhcCCCEEEEecCC
Q 032030 3 NGALPEERIRAVETGGCP-----HAAIREDISINLGPLEELSNLFKADLLLCESGG 53 (148)
Q Consensus 3 ~~~~~~~~~~~~~~nGci-----cc~i~~dl~~~~~al~~l~~~~~~D~IliEtsG 53 (148)
||...++.+++. |+. ...+.||.....+++.+++++.+.|+|+ |||
T Consensus 24 n~~~L~~~L~~~---G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVi--tTG 74 (195)
T 1di6_A 24 GIPALEEWLTSA---LTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVL--TTG 74 (195)
T ss_dssp HHHHHHHHHHHH---BCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEE--EES
T ss_pred HHHHHHHHHHHc---CCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEE--ECC
Confidence 344455555553 543 2355777766556776666544789998 566
No 262
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=23.73 E-value=30 Score=28.16 Aligned_cols=39 Identities=13% Similarity=0.024 Sum_probs=25.4
Q ss_pred eEEEEecC--CCC--CchhhhHHHHHHHHHhcCCCCcEEEEEecC
Q 032030 92 DLLVINKT--DLA--SAIGADLAVMERDALRMRDGGPFIFAQVGW 132 (148)
Q Consensus 92 DivViNK~--DL~--~~~~~~l~~~~~~i~~~np~a~vi~tSa~~ 132 (148)
-+.++||. |+. +. ..++++++++...+|+++++++||+.
T Consensus 225 viy~~Nv~e~~~~~~~n--~~~~~v~~~~~~~~~~~~~v~~sa~~ 267 (396)
T 2ohf_A 225 MVYLVNLSEKDYIRKKN--KWLIKIKEWVDKYDPGALVIPFSGAL 267 (396)
T ss_dssp EEEEEECCHHHHHHTCC--HHHHHHHHHHHHHSTTCEEEEECHHH
T ss_pred eEEEEEecHHHhccccc--HHHHHHHHHHHhhCCCCeEEEEEcHH
Confidence 46677876 232 12 33556777666556889999999874
No 263
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=23.11 E-value=57 Score=22.99 Aligned_cols=13 Identities=38% Similarity=0.573 Sum_probs=11.2
Q ss_pred cCCCEEEEecCCc
Q 032030 42 FKADLLLCESGGD 54 (148)
Q Consensus 42 ~~~D~IliEtsG~ 54 (148)
..+|+|+||+.|.
T Consensus 107 ~~yD~viID~p~~ 119 (224)
T 1byi_A 107 QQADWVLVEGAGG 119 (224)
T ss_dssp TTCSEEEEECSSS
T ss_pred HhCCEEEEEcCCc
Confidence 4799999999975
No 264
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=23.01 E-value=71 Score=23.42 Aligned_cols=59 Identities=12% Similarity=-0.018 Sum_probs=32.4
Q ss_pred cCCCEEEEecCCceeeeee---ccccCceEEEEEeCCCCCC--cc---c-cCCCCcceeeEEEEecCCC
Q 032030 42 FKADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDK--IP---R-KGGPGITQADLLVINKTDL 101 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~~~~---~~~~~d~~i~vvDa~~~~~--~~---~-~~~~qi~~ADivViNK~DL 101 (148)
..+|+|+|++.+..-.... ....+|.++.++.+....- .. . .....++ .--+|+||.|-
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~-~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTS-VLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCC-EEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCC-EEEEEECCCcc
Confidence 4799999999985321111 1124688888887654421 00 0 0011222 11389999873
No 265
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=22.82 E-value=53 Score=23.62 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=25.5
Q ss_pred ChhhhhhhhhcCCCee---eeeccchhhchHHHHHhhhhcCCCEEEEecCC
Q 032030 6 LPEERIRAVETGGCPH---AAIREDISINLGPLEELSNLFKADLLLCESGG 53 (148)
Q Consensus 6 ~~~~~~~~~~~nGcic---c~i~~dl~~~~~al~~l~~~~~~D~IliEtsG 53 (148)
..++++++....|+.. -.+.||.....+++.+++...+.|+|+ |||
T Consensus 38 ~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVI--ttG 86 (189)
T 1jlj_A 38 NLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLIL--TTG 86 (189)
T ss_dssp HHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEE--EES
T ss_pred HHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEE--EcC
Confidence 3444444311146643 345777766556666655434689887 566
No 266
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=22.26 E-value=51 Score=21.63 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=16.5
Q ss_pred eeccchhhchH----HHHHhhh-hcCCCEEEE
Q 032030 23 AIREDISINLG----PLEELSN-LFKADLLLC 49 (148)
Q Consensus 23 ~i~~dl~~~~~----al~~l~~-~~~~D~Ili 49 (148)
++|+|+.+.+. ++++|-. ...||+|++
T Consensus 10 ~~rgdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 10 STRGDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 45677766543 3444432 358999993
No 267
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=20.53 E-value=79 Score=22.70 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=22.3
Q ss_pred CCCEEEEecCCceeeeee-ccccCceEEEEEeCCC
Q 032030 43 KADLLLCESGGDNLAANF-SRELADYIIYIIDVSG 76 (148)
Q Consensus 43 ~~D~IliEtsG~~~~~~~-~~~~~d~~i~vvDa~~ 76 (148)
.+|+|+|++.+..-..+. .-..+|.++.++.+..
T Consensus 113 ~yD~viiD~p~~~~~~~~~~l~~ad~vi~v~~~~~ 147 (260)
T 3q9l_A 113 DFEFIVCDSPAGIETGALMALYFADEAIITTNPEV 147 (260)
T ss_dssp TCSEEEEECCSSSSHHHHHHHHTCSEEEEEECSSH
T ss_pred CCCEEEEcCCCCCCHHHHHHHHhCCEEEEEecCCh
Confidence 799999999874321111 1135788888888643
No 268
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=20.07 E-value=59 Score=23.68 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=23.1
Q ss_pred cCCCEEEEecCCceeeeee----ccccCceEEEEEeCCC
Q 032030 42 FKADLLLCESGGDNLAANF----SRELADYIIYIIDVSG 76 (148)
Q Consensus 42 ~~~D~IliEtsG~~~~~~~----~~~~~d~~i~vvDa~~ 76 (148)
..+|+|+|++.|......+ ....+|.++.++.+..
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~ 152 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEM 152 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSH
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCch
Confidence 3699999999885322111 1135788888887643
Done!