BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032034
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|B Chain B, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|C Chain C, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|D Chain D, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|E Chain E, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|F Chain F, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|G Chain G, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|H Chain H, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
Length = 178
Score = 244 bits (622), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 113/147 (76%), Positives = 129/147 (87%), Gaps = 1/147 (0%)
Query: 3 LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
+ +F + +S+YNNIHHP KLAVGADFYCFK+KIEPKWEDP+CANGGKWT +PKGKS
Sbjct: 32 IYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKS 91
Query: 63 DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
DTSWLYTLLAMIGEQFDHGDEICGAVVNVR R EKIS+WTKNASNEAAQ+SIGKQWKE L
Sbjct: 92 DTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFL 151
Query: 123 DYSDTIGFIFHEDA-KHDNRSKNRYTT 148
DY++T+GFIFH+DA K D +KN+Y
Sbjct: 152 DYNETMGFIFHDDARKLDRNAKNKYVV 178
>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
pdb|2IDR|B Chain B, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
Length = 177
Score = 224 bits (572), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 105/147 (71%), Positives = 124/147 (84%), Gaps = 1/147 (0%)
Query: 3 LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
+ +F + + LYNNIH+PSKL VGADF+CFKNKIEPKWEDP+CANGGKWT+ +GKS
Sbjct: 31 IHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKS 90
Query: 63 DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
DT WL+TLLAMIGEQFD GDEICGAVV+VR +QE++++WTKNA+NEAAQ+SIGKQWKE L
Sbjct: 91 DTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFL 150
Query: 123 DYSDTIGFIFHEDAKH-DNRSKNRYTT 148
DY D+IGFI HEDAK D KNRYT
Sbjct: 151 DYKDSIGFIVHEDAKRSDKGPKNRYTV 177
>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7-
Methyl-Gdp
Length = 177
Score = 221 bits (562), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/147 (70%), Positives = 123/147 (83%), Gaps = 1/147 (0%)
Query: 3 LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
+ +F + + LYNNIH+PSKL VGADF+CFKNKIEPKWEDP+ ANGGKWT+ +GKS
Sbjct: 31 IHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPISANGGKWTISCGRGKS 90
Query: 63 DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
DT WL+TLLAMIGEQFD GDEICGAVV+VR +QE++++WTKNA+NEAAQ+SIGKQWKE L
Sbjct: 91 DTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFL 150
Query: 123 DYSDTIGFIFHEDAKH-DNRSKNRYTT 148
DY D+IGFI HEDAK D KNRYT
Sbjct: 151 DYKDSIGFIVHEDAKRSDKGPKNRYTV 177
>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex
pdb|4AXG|B Chain B, Structure Of Eif4e-Cup Complex
Length = 248
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 89/152 (58%), Gaps = 7/152 (4%)
Query: 3 LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
+ SF + +SLYN+I PS++ +G+D+ FK I P WED GG+W + K
Sbjct: 96 ITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSK 155
Query: 63 ---DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWK 119
D WL LL +IGE FDH D+ICGAV+N+R + KIS+WT + +NE A + IG + +
Sbjct: 156 TDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLR 215
Query: 120 ELLDY--SDTIGFIFHEDA--KHDNRSKNRYT 147
+ L ++++ + H+D K + K+ YT
Sbjct: 216 DALRLGRNNSLQYQLHKDTMVKQGSNVKSIYT 247
>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
pdb|4DUM|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
Length = 240
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK 61
++ F + ++LYN+I S L G D+ FK+ IEP WED GG+W + K +
Sbjct: 85 LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQ 144
Query: 62 S----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGK 116
D WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT N A IG+
Sbjct: 145 RRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGR 204
Query: 117 QWKELLDYSD--TIGFIFHED--AKHDNRSKNRYTT 148
+KE L IG+ H D K + +KNR+
Sbjct: 205 VYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 240
>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g
Cap
pdb|3M94|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With
M2,2,7g Cap
Length = 189
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 84/138 (60%), Gaps = 7/138 (5%)
Query: 6 FHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS--- 62
F + +SLYN+I S L G+D+Y FK I+P WED GG+W V+ K K
Sbjct: 32 FDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGGRWLVVVDKQKRAQL 91
Query: 63 -DTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKE 120
D WL L+A+IGEQF D+G+ ICGAVVNVR + +K+SLWT+++ + + IG+ K
Sbjct: 92 LDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVNLRIGQILKA 151
Query: 121 LLDYSDT--IGFIFHEDA 136
L+ DT I + H+D+
Sbjct: 152 KLEIPDTEPIRYEVHKDS 169
>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gpppa
pdb|1IPC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gtp
pdb|2GPQ|A Chain A, Cap-Free Structure Of Eif4e Suggests Basis For Its
Allosteric Regulation
pdb|2V8W|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8W|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2W97|A Chain A, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
pdb|3TF2|A Chain A, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|B Chain B, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|C Chain C, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|D Chain D, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3U7X|A Chain A, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|3U7X|B Chain B, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|4AZA|A Chain A, Improved Eif4e Binding Peptides By Phage Display Guided
Design.
pdb|4AZA|C Chain C, Improved Eif4e Binding Peptides By Phage Display Guided
Design
Length = 217
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK 61
++ F + ++LYN+I S L G D+ FK+ IEP WED GG+W + K +
Sbjct: 62 LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQ 121
Query: 62 S----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGK 116
D WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT N A IG+
Sbjct: 122 RRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGR 181
Query: 117 QWKELLDYSD--TIGFIFHED--AKHDNRSKNRYTT 148
+KE L IG+ H D K + +KNR+
Sbjct: 182 VYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 217
>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
Length = 217
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK 61
++ F + ++LYN+I S L G D+ FK+ IEP WED GG+W + K +
Sbjct: 62 LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQ 121
Query: 62 S----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGK 116
D WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT N A IG+
Sbjct: 122 RRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGR 181
Query: 117 QWKELLDYSD--TIGFIFHED--AKHDNRSKNRYTT 148
+KE L IG+ H D K + +KNR+
Sbjct: 182 VYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 217
>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa-
4ebp1 Peptide
pdb|3AM7|A Chain A, Crystal Structure Of The Ternary Complex Of
Eif4e-M7gtp-4ebp2 Peptide
Length = 191
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK 61
++ F + ++LYN+I S L G D+ FK+ IEP WED GG+W + K +
Sbjct: 36 LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQ 95
Query: 62 S----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGK 116
D WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT N A IG+
Sbjct: 96 RRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGR 155
Query: 117 QWKELLDYSD--TIGFIFHED--AKHDNRSKNRYTT 148
+KE L IG+ H D K + +KNR+
Sbjct: 156 VYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 191
>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ1|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ4|A Chain A, Cocrystal Structure Of Eif4e4E-Bp1 Peptide
pdb|1EJH|A Chain A, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|B Chain B, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|C Chain C, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|D Chain D, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1L8B|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
pdb|1L8B|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
Length = 190
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK 61
++ F + ++LYN+I S L G D+ FK+ IEP WED GG+W + K +
Sbjct: 35 LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQ 94
Query: 62 S----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGK 116
D WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT N A IG+
Sbjct: 95 RRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGR 154
Query: 117 QWKELLDYSD--TIGFIFHED--AKHDNRSKNRYTT 148
+KE L IG+ H D K + +KNR+
Sbjct: 155 VYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 190
>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With
M7gtp
pdb|2JGC|A Chain A, Structure Of The Human Eif4e Homologous Protein, 4ehp
Without Ligand Bound
Length = 195
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 72/121 (59%)
Query: 3 LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
+ +F S + Y+++ P L +DF+ FK I+P WED NGGKW + KG +
Sbjct: 46 IGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLA 105
Query: 63 DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 122
W +LAM+GEQF G+EICGAVV+VR +++ IS+W K AS++A I + +L
Sbjct: 106 SRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVL 165
Query: 123 D 123
+
Sbjct: 166 N 166
>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With
M7gpppa And 4e-Bp
pdb|3HXI|A Chain A, Crystal Structure Of Schistosome Eif4e Complexed With
M7gpppg And 4e-Bp
Length = 189
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 3 LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTV-IFPKGK 61
+ +F + +S+ + P ++ G D Y FK+ I PKWEDP NGG+W + + +
Sbjct: 36 VATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKNENGGRWLINVTARQD 95
Query: 62 SDTSWLYTLLAMIGEQFDHGDE---ICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQW 118
D W L+ +IG +D +E ICGAV R+R K+S+W + + E +SIG++
Sbjct: 96 VDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSDNEEETILSIGRRI 155
Query: 119 KELLDYSDTIGFIFHEDAKHDNRSKNR 145
KE L+ DTI F D RS+ R
Sbjct: 156 KERLELEDTIYF----QPVSDQRSQTR 178
>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp,
Nmr, 20 Structures
Length = 213
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 6/128 (4%)
Query: 3 LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS 62
+ SF + +++ NI P +L + +D++ F+N + P+WED A GGKW+ +GK
Sbjct: 65 VTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQL-RGKG 123
Query: 63 ---DTSWLYTLLAMIGEQFDHGD-EICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQW 118
D WL TLLA+IGE D D +I G V+++R K +LWTK+ E + IG ++
Sbjct: 124 ADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKEPL-LRIGGKF 182
Query: 119 KELLDYSD 126
K++L +D
Sbjct: 183 KQVLKLTD 190
>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation
Factor Eif4e In Complex With M7gdp And Eif4gi Residues
393 To 490
Length = 213
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
Query: 3 LKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTV-IFPKGK 61
+ SF + +++ NI P +L + +D++ F+N + P+WED A GGKW+ + KG
Sbjct: 65 VTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLCGKGA 124
Query: 62 S-DTSWLYTLLAMIGEQFDHGD-EICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWK 119
D WL TLLA+IGE D D +I G V+++R K +LWTK E + IG ++K
Sbjct: 125 DIDELWLCTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKCEDKEPL-LRIGGKFK 183
Query: 120 ELLDYSD 126
++L +D
Sbjct: 184 QVLKLTD 190
>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene
Expression Via A Novel Mode Of Recognition Of The
Methyl-7 Guanosine Cap Moiety
Length = 207
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 13 FSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLA 72
+S+YNNI + L + ++ + + P WE+ A GG W + PK + T W LLA
Sbjct: 69 WSVYNNIPPVTSLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLA 128
Query: 73 MIGEQFDH----GDEICGAVVNVRARQEKISLWTKNAS 106
IGEQF DEI G V+VR R++ + +W NAS
Sbjct: 129 TIGEQFTDCAAADDEIIGVSVSVRDREDVVQVWNVNAS 166
>pdb|1YTL|A Chain A, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|B Chain B, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|C Chain C, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|D Chain D, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
Length = 174
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 68 YTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT 127
Y L+ M+G + HG ++ A+ N +++ N A MS G WK+ DY
Sbjct: 109 YDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHPN--ADMSFGNLWKKEEDYLKL 166
Query: 128 IGFIFHE 134
+ I E
Sbjct: 167 LDEILAE 173
>pdb|3MGJ|A Chain A, Crystal Structure Of The Saccharop_dh_n Domain Of Mj1480
Protein From Methanococcus Jannaschii. Northeast
Structural Genomics Consortium Target Mjr83a.
pdb|3MGJ|B Chain B, Crystal Structure Of The Saccharop_dh_n Domain Of Mj1480
Protein From Methanococcus Jannaschii. Northeast
Structural Genomics Consortium Target Mjr83a
Length = 118
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 38 IEPKWEDPVCANGGKWTVI-FPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQE 96
I PK D + GG + V+ F GK T Y + +IG H DEI + ++ A
Sbjct: 17 ILPKVFDKILDXGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEILNELRDLGAEIP 76
Query: 97 KIS 99
+I
Sbjct: 77 EIE 79
>pdb|2HCF|A Chain A, Crystal Structure Of Hydrolase Haloacid Dehalogenase-Like
Family (Np_662590.1) From Chlorobium Tepidum Tls At 1.80
A Resolution
Length = 234
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 60 GKSDTSWLYTLLAMIG-------EQFDHGDEICGAVVNVRARQEKISLW 101
GK D + +Y +L+ +G ++FD E A+ RAR+E I+L
Sbjct: 47 GKXDGAIIYEVLSNVGLERAEIADKFDKAKETYIALFRERARREDITLL 95
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 28.1 bits (61), Expect = 1.8, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 20 HHPSKLAVGADFY--------CFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLL 71
++PS +V D++ C K+ IE K ED +CA G + WL +
Sbjct: 545 YYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAM 604
Query: 72 AMIGEQ 77
I E+
Sbjct: 605 NRIAEE 610
>pdb|1MHZ|B Chain B, Methane Monooxygenase Hydroxylase
pdb|1MHY|B Chain B, Methane Monooxygenase Hydroxylase
Length = 395
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 89 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHD 139
V + A+ EK++ T +A A + WK +DY+D IGF D K D
Sbjct: 339 VGLYAKVEKVAGATDSAGVSEALQRVFGDWK--IDYADKIGFRVDVDQKVD 387
>pdb|1XTD|A Chain A, Structural Analysis Of Leishmania Mexicana Eukaryotic
Initiation Factor 5a
Length = 174
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 70 LLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNAS 106
L I EQFD G E+ VV V A + L TKNA+
Sbjct: 138 LATQIKEQFDSGKEVL--VVVVSAXGTEQVLQTKNAA 172
>pdb|1TJ2|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With Acetate
Length = 584
Score = 26.6 bits (57), Expect = 5.6, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 71 LAMIGEQFDHGDEICGAVVNVRARQEK 97
+ ++GEQF G+ I A+ N R +EK
Sbjct: 167 MRLMGEQFVTGETIAEALANARKLEEK 193
>pdb|1TIW|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With
L-Tetrahydro-2-Furoic Acid
pdb|1TJ0|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Co-Crystallized With L-Lactate
pdb|1TJ1|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With L-Lactate
pdb|2FZN|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With Proline
pdb|2FZM|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With So2
Length = 602
Score = 26.6 bits (57), Expect = 5.6, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 71 LAMIGEQFDHGDEICGAVVNVRARQEK 97
+ ++GEQF G+ I A+ N R +EK
Sbjct: 167 MRLMGEQFVTGETIAEALANARKLEEK 193
>pdb|3ITG|A Chain A, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
pdb|3ITG|B Chain B, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
Length = 602
Score = 26.6 bits (57), Expect = 5.6, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 71 LAMIGEQFDHGDEICGAVVNVRARQEK 97
+ ++GEQF G+ I A+ N R +EK
Sbjct: 167 MRLMGEQFVTGETIAEALANARKLEEK 193
>pdb|3E2Q|A Chain A, Crystal Structure Reduced Puta86-630 Mutant Y540s
Complexed With Trans-4-Hydroxy-L-Proline
pdb|3E2R|A Chain A, Crystal Structure Puta86-630 Mutant Y540s Complexed With
L-Tetrahydro- 2-Furoic Acid
pdb|3E2S|A Chain A, Crystal Structure Reduced Puta86-630 Mutant Y540s
Complexed With L- Proline
Length = 551
Score = 26.6 bits (57), Expect = 5.6, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 71 LAMIGEQFDHGDEICGAVVNVRARQEK 97
+ ++GEQF G+ I A+ N R +EK
Sbjct: 167 MRLMGEQFVTGETIAEALANARKLEEK 193
>pdb|1K87|A Chain A, Crystal Structure Of E.coli Puta (residues 1-669)
Length = 669
Score = 26.6 bits (57), Expect = 5.6, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 71 LAMIGEQFDHGDEICGAVVNVRARQEK 97
+ ++GEQF G+ I A+ N R +EK
Sbjct: 252 MRLMGEQFVTGETIAEALANARKLEEK 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,926,892
Number of Sequences: 62578
Number of extensions: 191217
Number of successful extensions: 439
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 26
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)