Query 032034
Match_columns 148
No_of_seqs 119 out of 638
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:42:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1670 Translation initiation 100.0 2.7E-57 5.8E-62 353.2 13.6 147 2-148 60-212 (212)
2 PF01652 IF4E: Eukaryotic init 100.0 7.3E-48 1.6E-52 293.1 15.0 132 2-133 28-165 (165)
3 KOG1669 Predicted mRNA cap-bin 100.0 8.9E-49 1.9E-53 298.7 8.8 136 2-137 58-195 (208)
4 PTZ00040 translation initiatio 100.0 2.7E-44 5.8E-49 287.0 12.5 122 2-123 67-212 (233)
5 COG5053 CDC33 Translation init 100.0 1.9E-41 4.1E-46 261.2 12.2 138 2-139 64-207 (217)
6 PF08939 DUF1917: Domain of un 96.4 0.034 7.3E-07 45.3 9.3 79 50-134 150-238 (243)
7 PF11525 CopK: Copper resistan 65.8 3.2 6.9E-05 27.7 1.0 21 24-45 11-31 (73)
8 PF08977 BOFC_N: Bypass of For 53.9 4.1 9E-05 25.4 -0.1 30 4-36 21-50 (51)
9 KOG0080 GTPase Rab18, small G 45.5 38 0.00082 26.6 4.0 40 68-108 26-71 (209)
10 KOG0098 GTPase Rab2, small G p 43.8 79 0.0017 25.3 5.6 55 68-123 21-81 (216)
11 PHA00689 hypothetical protein 43.6 14 0.0003 23.1 1.1 13 41-57 29-41 (62)
12 COG3822 ABC-type sugar transpo 33.4 40 0.00087 26.9 2.5 30 31-60 91-126 (225)
13 KOG0086 GTPase Rab4, small G p 24.0 1.9E+02 0.0041 22.6 4.7 41 69-110 25-71 (214)
14 PF10260 SAYSvFN: Uncharacteri 22.4 71 0.0015 21.2 1.9 31 11-41 27-57 (71)
15 PF10580 Neuromodulin_N: Gap j 21.9 47 0.001 18.5 0.8 14 30-45 18-31 (32)
16 PF06462 Hyd_WA: Propeller; I 21.5 68 0.0015 17.6 1.4 19 31-54 11-29 (32)
17 PF14535 AMP-binding_C_2: AMP- 21.5 2.6E+02 0.0057 18.7 5.3 53 82-134 17-80 (96)
No 1
>KOG1670 consensus Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-57 Score=353.24 Aligned_cols=147 Identities=52% Similarity=0.919 Sum_probs=140.7
Q ss_pred ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCC---cHHHHHHHHHHHhcCCC
Q 032034 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK---SDTSWLYTLLAMIGEQF 78 (148)
Q Consensus 2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~---~~~~W~~lll~~Ige~f 78 (148)
.|.+|+|||+||++|+||++||+|+.+|||++||+||+||||||+|.|||||++.+++.. .|.+|+++||++|||+|
T Consensus 60 ~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~~GGrW~~~~~k~~k~~lD~~WL~tLlalIGE~f 139 (212)
T KOG1670|consen 60 EVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANKNGGRWLITVPKSGKAELDELWLETLLALIGEQF 139 (212)
T ss_pred hccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCccccCCCeEEEEecCcchhhHHHHHHHHHHHHHhhhc
Confidence 478999999999999999999999999999999999999999999999999999999753 39999999999999999
Q ss_pred CCCCCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCC-CceeEEEccccc--CCCCCCceeEC
Q 032034 79 DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYS-DTIGFIFHEDAK--HDNRSKNRYTT 148 (148)
Q Consensus 79 ~~~~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~-~~i~~~~h~~~~--~~~~~~~~~~~ 148 (148)
+++++|||+|+++|++++|||||++++++++.+.+||..+|++|+++ ..|+|+.|.++. ++|.+|++|++
T Consensus 140 d~~deICGaV~NiR~k~~KISvWT~~~~ne~~~l~IG~~~Ke~L~~~~~~i~y~~H~ds~~k~~s~~K~~~tv 212 (212)
T KOG1670|consen 140 DHSDEICGAVVNIRGKGDKISVWTKNAGNEEAVLRIGRVLKEVLGLPRDVIGYQLHKDSSKKSGSTAKNRYTV 212 (212)
T ss_pred cccccceeEEEEeccCCceEEEEecCCCchHHHHHHHHHHHHHhCCCcceEEEEechhhHhhcCCcccceecC
Confidence 99999999999999999999999999999999999999999999998 679999999988 78999999985
No 2
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs. eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....
Probab=100.00 E-value=7.3e-48 Score=293.11 Aligned_cols=132 Identities=44% Similarity=0.801 Sum_probs=123.0
Q ss_pred ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCC---CcHHHHHHHHHHHhcCCC
Q 032034 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKG---KSDTSWLYTLLAMIGEQF 78 (148)
Q Consensus 2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~---~~~~~W~~lll~~Ige~f 78 (148)
.|++|+|||+||++|++|++|++|+.+++|+|||+||+||||||+|++||+|+++++++ ..+++|++|+|++|||+|
T Consensus 28 ~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~~i~~~~~~~~~~~~~W~~lll~~IGe~~ 107 (165)
T PF01652_consen 28 PIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRWIIRIKKKNKEQVDEIWENLLLAVIGEQF 107 (165)
T ss_dssp EEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEEEEEEETTCHHTHHHHHHHHHHHHHTTTS
T ss_pred EEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEEEEEEcCccchhHHHHHHHHHHHHhhccc
Confidence 58999999999999999999999999999999999999999999999999999999998 789999999999999999
Q ss_pred CCC-CCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCc--eeEEEc
Q 032034 79 DHG-DEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFH 133 (148)
Q Consensus 79 ~~~-~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~--i~~~~h 133 (148)
+.. ++||||++|+|+++++|+||+++.++++.+.+|++.++++|+++++ +.|++|
T Consensus 108 ~~~~~~I~Gi~~s~r~~~~~i~iW~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~y~~H 165 (165)
T PF01652_consen 108 DEDGDEICGIVLSVRKNGIRISIWNKDSSDEDAQNRIGKKIKEILNLPPNTKIEYKSH 165 (165)
T ss_dssp CCGGGGEEEEEEEEESSEEEEEEEESSTT-HHHHHHHHHHHHHHHTTTTTSEEEEEEH
T ss_pred ccCCCcceEEEEEEecCCCEEEEecCCCCCHHHHHHHHHHHHHHhCcCCCCeEEEecC
Confidence 865 8999999999999999999999999888899999999999999874 788877
No 3
>KOG1669 consensus Predicted mRNA cap-binding protein related to eIF-4E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-49 Score=298.70 Aligned_cols=136 Identities=37% Similarity=0.665 Sum_probs=131.3
Q ss_pred ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCC
Q 032034 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHG 81 (148)
Q Consensus 2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~~~~~W~~lll~~Ige~f~~~ 81 (148)
+|++|.|||+||++|.|+++|+.|+..+++||||+||+|+|||++|.|||+|+|+++|..++++||+|||+++||||..+
T Consensus 58 ~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKeGIkPvWED~aN~nGgkWiirlkK~vs~R~wE~LLlal~geqf~~~ 137 (208)
T KOG1669|consen 58 SIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWEDKANCNGGKWIIRLKKGVSQRYWENLLLALCGEQFKVG 137 (208)
T ss_pred hheeeeeHHHHHHHHHHhcCccccCCceeehhhhccCcccccCcCCCCCCeEEEEehHHHHHHHHHHHHHHHHhhhhccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCc--eeEEEccccc
Q 032034 82 DEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDAK 137 (148)
Q Consensus 82 ~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~--i~~~~h~~~~ 137 (148)
++|||+|+|+|.++++||||++++++.....+|.+.||.+|+||+. ++|+.|+++.
T Consensus 138 e~icGaV~svr~nediiSiWnRna~dta~~~~irdtLk~~L~lp~~~vmeYK~H~~~L 195 (208)
T KOG1669|consen 138 EEICGAVGSVRFNEDIISIWNRNASDTADTGRIRDTLKRVLELPFNTVMEYKNHDDSL 195 (208)
T ss_pred ccccceeEEEeccchhhhhhcCCCCcchhHHHHHHHHHHHhcCCcceEEEecchhhhh
Confidence 9999999999999999999999999999899999999999999986 7778888876
No 4
>PTZ00040 translation initiation factor E4; Provisional
Probab=100.00 E-value=2.7e-44 Score=286.98 Aligned_cols=122 Identities=30% Similarity=0.529 Sum_probs=112.8
Q ss_pred ceeeeccHHHHHHHhcCCCCCCCCCCCce---------------eeeecCCCccCCCCCCCCCCcEEEEEeCCC-----C
Q 032034 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGAD---------------FYCFKNKIEPKWEDPVCANGGKWTVIFPKG-----K 61 (148)
Q Consensus 2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~---------------~~lFk~gI~P~WED~~N~nGG~w~i~~~k~-----~ 61 (148)
.|++|+|||+||++|+||++||+|+.+++ |||||+||+||||||+|++||+|++++++. .
T Consensus 67 ~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~lFK~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~ 146 (233)
T PTZ00040 67 PLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMIFKDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQ 146 (233)
T ss_pred EEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeeeecCCCeECcCCCCcCCCCEEEEEeccccccccH
Confidence 58999999999999999999999999875 999999999999999999999999999653 2
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCeeeEEE----EecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 032034 62 SDTSWLYTLLAMIGEQFDHGDEICGAVV----NVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 123 (148)
Q Consensus 62 ~~~~W~~lll~~Ige~f~~~~~I~Giv~----s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~ 123 (148)
.|++|++|||++|||+|+..++||||++ |+|++.++|+||++++++++.+.+|++.++++|.
T Consensus 147 ~d~~W~~llLa~IGe~~~~~d~I~Gvvv~~K~s~R~~~~rIsIW~~~~~d~~~~~~i~~~i~~~l~ 212 (233)
T PTZ00040 147 IDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTNLGDQSDRNQLMKEIETCMA 212 (233)
T ss_pred HHHHHHHHHHHHhcCcCCCCcccccEEEeeecccCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 4999999999999999998899999996 6778889999999999999988999999999773
No 5
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-41 Score=261.25 Aligned_cols=138 Identities=36% Similarity=0.657 Sum_probs=127.6
Q ss_pred ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCCc---HHHHHHHHHHHhcCCC
Q 032034 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQF 78 (148)
Q Consensus 2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~~---~~~W~~lll~~Ige~f 78 (148)
.|++|+|||+||++.++|+.++.||..++|++||+||+|+|||++|+|||+|.+.++...+ +++|+.+++++|||++
T Consensus 64 ~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~~Ggkws~qlk~~g~d~~dElwl~tlla~igeT~ 143 (217)
T COG5053 64 SIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANMNGGKWSFQLKGKGCDRLDELWLRTLLAAIGETL 143 (217)
T ss_pred hheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccCCCCeEEEEcccccchhHHHHHHHHHHHHHhhcc
Confidence 5899999999999999999999999999999999999999999999999999999998665 7899999999999999
Q ss_pred C-CCCCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCc--eeEEEcccccCC
Q 032034 79 D-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDAKHD 139 (148)
Q Consensus 79 ~-~~~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~--i~~~~h~~~~~~ 139 (148)
+ .+.+|||+|++.|++.+||+||++++.+.+.+.+|+.++|.+|+|+.. ++|+.|.-++.+
T Consensus 144 Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~dvl~~ig~efk~vl~ls~~~tle~k~heSsk~g 207 (217)
T COG5053 144 DPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDVLGAIGNEFKQVLELSDVETLEYKAHESSKLG 207 (217)
T ss_pred CCCCCeeccEEEEeecCceEEEEEecCCCcHHHHHHHHHHHHhcccccceeEEEeccccccccc
Confidence 7 467899999999999999999999999999999999999999999864 777778644433
No 6
>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins.; PDB: 1ZTP_B 2Q4K_C.
Probab=96.40 E-value=0.034 Score=45.25 Aligned_cols=79 Identities=20% Similarity=0.342 Sum_probs=55.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCeeeEEEEec------CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 032034 50 GGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVR------ARQEKISLWTKNASNEAAQMSIGKQWKELLD 123 (148)
Q Consensus 50 GG~w~i~~~k~~~~~~W~~lll~~Ige~f~~~~~I~Giv~s~R------~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~ 123 (148)
-|+|+|-++...+|++|..+.-+.+.+++. +++-|+.+ .+...|.|.+.|..|.+.+.++.+.|++. |
T Consensus 150 sGKWmlf~~~~~vd~~W~~Va~at~~g~Lg-----~~AKVst~~~~~~~~~~~vIcVYT~Df~D~~DV~RVl~~Lr~~-g 223 (243)
T PF08939_consen 150 SGKWMLFPPPDRVDEIWSKVAKATADGELG-----ISAKVSTGPEDDDGDDRRVICVYTPDFRDREDVMRVLRRLREL-G 223 (243)
T ss_dssp -EEEEEEE-TTHHHHHHHHHHHHHHTTSS------SEEEE-----B-TTSS-EEEEEEES-TT-HHHHHHHHHHHHHT-T
T ss_pred cceeEEEcCHHHHHHHHHHHHHHHHcCCce-----eeEEecccCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHc-C
Confidence 799999999998899999999999988773 34555541 12367999999999998899999999766 7
Q ss_pred CCC----ceeEEEcc
Q 032034 124 YSD----TIGFIFHE 134 (148)
Q Consensus 124 l~~----~i~~~~h~ 134 (148)
+-. .|.|++-.
T Consensus 224 l~~~~~~~i~YK~D~ 238 (243)
T PF08939_consen 224 LVDPDGRPIYYKPDA 238 (243)
T ss_dssp --S-----EEEEEHH
T ss_pred CccccccceeecCch
Confidence 655 58888743
No 7
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=65.81 E-value=3.2 Score=27.66 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=15.9
Q ss_pred CCCCCceeeeecCCCccCCCCC
Q 032034 24 KLAVGADFYCFKNKIEPKWEDP 45 (148)
Q Consensus 24 ~l~~~~~~~lFk~gI~P~WED~ 45 (148)
+|..|+.+|+||+|-..| ||.
T Consensus 11 ~LkDGstvyiFKDGKMam-Edk 31 (73)
T PF11525_consen 11 PLKDGSTVYIFKDGKMAM-EDK 31 (73)
T ss_dssp EBTTSEEEEEETTS-EEE-EET
T ss_pred ecCCCCEEEEEcCCceeh-hhh
Confidence 578999999999997653 444
No 8
>PF08977 BOFC_N: Bypass of Forespore C, N terminal; InterPro: IPR015071 The N-terminal domain of, bypass of forespore C, is composed of a four-stranded beta-sheet covered by an alpha-helix. The beta-sheet has a beta2-beta1-beta4-beta3 topology, where strands beta1 and beta2 and strands beta3 and beta4 are connected by beta-turns, whereas strands beta2 and beta3 are joined by an alpha-helix that runs across one face of the beta-sheet. This domain is similar to the third immunoglobulin G-binding domain of protein G from Streptococcus, the latter belonging to a large and diverse group of cell surface-associated proteins that bind to immunoglobulins. It has been hypothesised that this domain may be a mediator of protein-protein interactions involved in proteolytic events at the cell surface []. ; PDB: 2BW2_A.
Probab=53.91 E-value=4.1 Score=25.43 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=22.2
Q ss_pred eeeccHHHHHHHhcCCCCCCCCCCCceeeeecC
Q 032034 4 KSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKN 36 (148)
Q Consensus 4 ~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~ 36 (148)
.++-|.|+||.-|......+. .-++.+||+
T Consensus 21 Eti~s~ed~w~~Y~~WqLv~q---~~~~ivFrk 50 (51)
T PF08977_consen 21 ETIWSMEDFWAKYKGWQLVDQ---DDDQIVFRK 50 (51)
T ss_dssp EEEEEHHHHHHHSTTSEEEEE---ETTEEEEEE
T ss_pred eeeccHHHHHHhhcCcEEEEc---cCCEEEEEc
Confidence 478899999999998876542 445666764
No 9
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=45.49 E-value=38 Score=26.58 Aligned_cols=40 Identities=25% Similarity=0.498 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCCC-CCCeeeEEE-----EecCCCcEEEEEcCCCCCH
Q 032034 68 YTLLAMIGEQFDH-GDEICGAVV-----NVRARQEKISLWTKNASNE 108 (148)
Q Consensus 68 ~lll~~Ige~f~~-~~~I~Giv~-----s~R~~~~~IsIW~~~~~~~ 108 (148)
.|++.++.+.|+. .+.-.|+-+ +++.+..+++||- ++..|
T Consensus 26 SLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWD-TAGqE 71 (209)
T KOG0080|consen 26 SLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWD-TAGQE 71 (209)
T ss_pred HHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEe-ccchH
Confidence 5789999999974 344478854 5667889999995 44444
No 10
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.78 E-value=79 Score=25.30 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=36.2
Q ss_pred HHHHHHhcCCCC-CCCCeeeEE-----EEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcC
Q 032034 68 YTLLAMIGEQFD-HGDEICGAV-----VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 123 (148)
Q Consensus 68 ~lll~~Ige~f~-~~~~I~Giv-----~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~ 123 (148)
.|++-+....|. ..+.--||. ++++.+.+++.||- ++..|....-.+...+...|
T Consensus 21 clllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwD-taGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 21 CLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWD-TAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred HHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEe-cCCcHHHHHHHHHHhccCcc
Confidence 467778888885 455667775 57888899999995 55656543333334444433
No 11
>PHA00689 hypothetical protein
Probab=43.63 E-value=14 Score=23.15 Aligned_cols=13 Identities=46% Similarity=1.370 Sum_probs=11.0
Q ss_pred CCCCCCCCCCcEEEEEe
Q 032034 41 KWEDPVCANGGKWTVIF 57 (148)
Q Consensus 41 ~WED~~N~nGG~w~i~~ 57 (148)
-|||. ||.|++.-
T Consensus 29 rwedd----ggewvlme 41 (62)
T PHA00689 29 RWEDD----GGEWVLME 41 (62)
T ss_pred eeecC----CCcEEEEe
Confidence 59997 99999874
No 12
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=33.42 E-value=40 Score=26.89 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=24.4
Q ss_pred eeeecCCCccC---C---CCCCCCCCcEEEEEeCCC
Q 032034 31 FYCFKNKIEPK---W---EDPVCANGGKWTVIFPKG 60 (148)
Q Consensus 31 ~~lFk~gI~P~---W---ED~~N~nGG~w~i~~~k~ 60 (148)
.++++.-+.|| | ||--|..||.+++++-+.
T Consensus 91 M~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~ 126 (225)
T COG3822 91 MHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNV 126 (225)
T ss_pred EEeccCCcCcccccccchhhhhhcCCceEEEEEecc
Confidence 46777778887 4 888999999999998653
No 13
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.97 E-value=1.9e+02 Score=22.57 Aligned_cols=41 Identities=24% Similarity=0.453 Sum_probs=27.8
Q ss_pred HHHHHhcCCCC-CCCCeeeEEE-----EecCCCcEEEEEcCCCCCHHH
Q 032034 69 TLLAMIGEQFD-HGDEICGAVV-----NVRARQEKISLWTKNASNEAA 110 (148)
Q Consensus 69 lll~~Ige~f~-~~~~I~Giv~-----s~R~~~~~IsIW~~~~~~~~~ 110 (148)
||-.+|-.+|. +..+-.||.+ ++-.+..+++||- ++..+..
T Consensus 25 LLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWD-TAGQErF 71 (214)
T KOG0086|consen 25 LLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWD-TAGQERF 71 (214)
T ss_pred HHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEee-cccHHHH
Confidence 45557778885 4667888875 4445679999995 4444443
No 14
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=22.43 E-value=71 Score=21.20 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=23.3
Q ss_pred HHHHHhcCCCCCCCCCCCceeeeecCCCccC
Q 032034 11 SVFSLYNNIHHPSKLAVGADFYCFKNKIEPK 41 (148)
Q Consensus 11 ~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~ 41 (148)
-|+-+|.++..+-+=..-+.|++|.+|.+++
T Consensus 27 ~f~~I~~Nl~~~r~~ge~SAYSVFN~~~~~i 57 (71)
T PF10260_consen 27 GFYLIFTNLGTPRKPGELSAYSVFNKGCERI 57 (71)
T ss_pred HHHHHHHcCCCCCCCCCccchhhhCCCcccc
Confidence 4677788887744444568899999999874
No 15
>PF10580 Neuromodulin_N: Gap junction protein N-terminal region; InterPro: IPR018947 Neuromodulin is a component of the motile growth cones. It is membrane protein whose expression is widely correlated with successful axon elongation []. It is a crucial component of an effective regeneration response in the nervous system []. Although its function is uncertain, the N-terminal region is well conserved and contains both a calmodulin binding domain, and sites for acylation, membrane attachment and protein kinase C phosphorylation. Structure predictions suggest that the C-terminal region may exist as an extended, negatively-charged rod with some similarity to the side arms of neurofilaments, indicating that the biological role of neuromodulin may depend on its ability to form a dynamic membrane-cytoplasm-calmodulin complex []. This entry represents the neuromodulin N-terminal domain.
Probab=21.89 E-value=47 Score=18.54 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=9.2
Q ss_pred eeeeecCCCccCCCCC
Q 032034 30 DFYCFKNKIEPKWEDP 45 (148)
Q Consensus 30 ~~~lFk~gI~P~WED~ 45 (148)
+--+=.+||+| ||.
T Consensus 18 dQkieqDg~KP--Edk 31 (32)
T PF10580_consen 18 DQKIEQDGIKP--EDK 31 (32)
T ss_pred hhhhhhcCCCc--ccc
Confidence 34455688999 664
No 16
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=21.52 E-value=68 Score=17.58 Aligned_cols=19 Identities=26% Similarity=0.608 Sum_probs=13.8
Q ss_pred eeeecCCCccCCCCCCCCCCcEEE
Q 032034 31 FYCFKNKIEPKWEDPVCANGGKWT 54 (148)
Q Consensus 31 ~~lFk~gI~P~WED~~N~nGG~w~ 54 (148)
-.+||.||.| .|..|-.|.
T Consensus 11 ~v~~R~Gis~-----~~P~G~~W~ 29 (32)
T PF06462_consen 11 SVYFRTGISP-----SNPEGTSWE 29 (32)
T ss_pred CEEEECcCCC-----CCCCCCCcE
Confidence 4679999988 456676664
No 17
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=21.46 E-value=2.6e+02 Score=18.67 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=33.0
Q ss_pred CCeeeE---EEEecCCCcEEEEEcCCCCC--------HHHHHHHHHHHHHhcCCCCceeEEEcc
Q 032034 82 DEICGA---VVNVRARQEKISLWTKNASN--------EAAQMSIGKQWKELLDYSDTIGFIFHE 134 (148)
Q Consensus 82 ~~I~Gi---v~s~R~~~~~IsIW~~~~~~--------~~~~~~I~~~~k~~L~l~~~i~~~~h~ 134 (148)
++++|- +++.....+.+.|-.--... +....+|.+.+++.|++...+......
T Consensus 17 ~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~~V~lv~~g 80 (96)
T PF14535_consen 17 PEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRPEVELVPPG 80 (96)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-EEEEEE-TT
T ss_pred cCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceEEEEEECCC
Confidence 456632 23433445777777654432 346788999999999998877776643
Done!