Query 032034
Match_columns 148
No_of_seqs 119 out of 638
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 13:55:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2idr_A Eukaryotic translation 100.0 1.8E-56 6.2E-61 344.3 17.8 147 2-148 30-177 (177)
2 3m94_A Translation initiation 100.0 1.8E-55 6.2E-60 341.8 16.7 147 2-148 28-183 (189)
3 1l8b_A Eukaryotic translation 100.0 2E-55 6.9E-60 341.8 14.0 147 2-148 35-190 (190)
4 1ipb_A Eukaryotic translation 100.0 9.7E-55 3.3E-59 344.0 15.7 147 2-148 62-217 (217)
5 3hxi_A Eukaryotic translation 100.0 4.1E-55 1.4E-59 339.9 11.3 147 2-148 35-189 (189)
6 2jgb_A Eukaryotic translation 100.0 8.3E-54 2.9E-58 333.9 16.3 136 2-137 45-182 (195)
7 1ap8_A Translation initiation 100.0 3.8E-53 1.3E-57 334.1 18.3 145 2-148 64-213 (213)
8 4axg_A Eukaryotic translation 100.0 5.9E-52 2E-56 333.7 18.1 147 2-148 95-248 (248)
9 1ztp_A Basophilic leukemia exp 99.6 1.8E-15 6.1E-20 121.0 9.0 96 45-147 121-220 (251)
10 2k0q_A Putative uncharacterize 64.2 2.4 8.4E-05 27.3 1.1 21 24-45 11-31 (74)
11 1nrp_R Receptor based peptide 56.6 3.8 0.00013 20.8 0.8 12 36-47 13-24 (26)
12 1nro_R Receptor based peptide 50.8 4.8 0.00016 20.5 0.6 11 36-46 13-23 (27)
13 3hki_C Proteinase-activated re 36.6 13 0.00043 18.3 0.9 12 35-46 8-19 (21)
14 2dii_A TFIIH basal transcripti 32.2 31 0.0011 21.3 2.4 16 4-19 39-54 (61)
No 1
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Probab=100.00 E-value=1.8e-56 Score=344.32 Aligned_cols=147 Identities=71% Similarity=1.228 Sum_probs=140.9
Q ss_pred ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCC
Q 032034 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHG 81 (148)
Q Consensus 2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~~~~~W~~lll~~Ige~f~~~ 81 (148)
.|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||+|+++++|+..|++|++|||++|||+|+.+
T Consensus 30 ~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG~w~i~~~k~~~d~~W~~lll~~IGe~f~~~ 109 (177)
T 2idr_A 30 PIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFG 109 (177)
T ss_dssp CEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCEEEEEEECTTCCHHHHHHHHHHHHTTCSTTG
T ss_pred EEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCCEEEEEECcCcHHHHHHHHHHHHhcCcCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999889999999999999999988
Q ss_pred CCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCceeEEEccccc-CCCCCCceeEC
Q 032034 82 DEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAK-HDNRSKNRYTT 148 (148)
Q Consensus 82 ~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~i~~~~h~~~~-~~~~~~~~~~~ 148 (148)
++|||||+|+|+++++|+||++++++++.+..|++.++++|+++..+.|++|+++. .++++|++|+|
T Consensus 110 d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~~~y~~H~d~~~~~~~~k~~~~~ 177 (177)
T 2idr_A 110 DEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHEDAKRSDKGPKNRYTV 177 (177)
T ss_dssp GGEEEEEEEECSSCEEEEEEESCTTCHHHHHHHHHHHHHHHTCCSCCEEEEGGGGGSCSSSCCCSEEC
T ss_pred CceEEEEEEEecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhcCCCCccceEC
Confidence 89999999999999999999999999999999999999999998889999999988 45688999986
No 2
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*
Probab=100.00 E-value=1.8e-55 Score=341.84 Aligned_cols=147 Identities=41% Similarity=0.754 Sum_probs=136.5
Q ss_pred ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCC----cHHHHHHHHHHHhcCC
Q 032034 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGK----SDTSWLYTLLAMIGEQ 77 (148)
Q Consensus 2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~----~~~~W~~lll~~Ige~ 77 (148)
.|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||+|++++++.. .|++|++|||++|||+
T Consensus 28 ~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GGkw~i~~~k~~~~~~~d~~W~~lll~~IGe~ 107 (189)
T 3m94_A 28 QVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQ 107 (189)
T ss_dssp EEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCEEEEEEECTTTHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCCEEEEEecCccccchHHHHHHHHHHHHhCCc
Confidence 589999999999999999999999999999999999999999999999999999998864 3999999999999999
Q ss_pred CC-CCCCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCc--eeEEEccccc--CCCCCCceeEC
Q 032034 78 FD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDAK--HDNRSKNRYTT 148 (148)
Q Consensus 78 f~-~~~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~--i~~~~h~~~~--~~~~~~~~~~~ 148 (148)
|+ .+++|||||+|+|.++++|+||++++++++.+..|++.++++|++++. ++|++|.+++ ++|.+|++|+|
T Consensus 108 f~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~Ig~~lk~~L~l~~~~~i~y~~H~d~~~~~~s~~k~~~~v 183 (189)
T 3m94_A 108 FEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDTEPIRYEVHKDSSVRTGSMVKPRIVI 183 (189)
T ss_dssp SGGGGGGEEEEEEECCSSCEEEEEEESCTTCHHHHHHHHHHHHHHHTCCTTSCEEEEECC-----CCSCCCCSEEE
T ss_pred ccccCCcCceEEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHhCcCCCCEEEEEEchHhhhccCCCCceEEEE
Confidence 95 678999999999999999999999999999999999999999999864 8999999987 78889999985
No 3
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Probab=100.00 E-value=2e-55 Score=341.78 Aligned_cols=147 Identities=41% Similarity=0.776 Sum_probs=134.7
Q ss_pred ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCCc----HHHHHHHHHHHhcCC
Q 032034 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQ 77 (148)
Q Consensus 2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~~----~~~W~~lll~~Ige~ 77 (148)
.|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||+|++++++... |++|++|||++|||+
T Consensus 35 ~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~~GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~ 114 (190)
T 1l8b_A 35 LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGES 114 (190)
T ss_dssp EEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTTCEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTT
T ss_pred EEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCCCCEEEEEecCccCcchHHHHHHHHHHHHhhcc
Confidence 5899999999999999999999999999999999999999999999999999999988654 999999999999999
Q ss_pred C-CCCCCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCC--ceeEEEccccc--CCCCCCceeEC
Q 032034 78 F-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDAK--HDNRSKNRYTT 148 (148)
Q Consensus 78 f-~~~~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~--~i~~~~h~~~~--~~~~~~~~~~~ 148 (148)
| +.+++|||||+|+|+++++|+||++++++++.+..|++.++++|++++ .++|++|++++ ++|.++++|+|
T Consensus 115 f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~l~~~~~~~y~~H~d~~~~~~~~~~~~~~~ 190 (190)
T 1l8b_A 115 FDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 190 (190)
T ss_dssp TGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHHHTCCTTSCCEEEEHHHHHTC-----CCSEEC
T ss_pred cccCCCceeeEEEEeecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCeEEEEEcHHHHhccCCCCceeeeC
Confidence 9 567899999999999999999999999999999999999999999976 48999999987 56788999986
No 4
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*
Probab=100.00 E-value=9.7e-55 Score=344.03 Aligned_cols=147 Identities=41% Similarity=0.777 Sum_probs=139.1
Q ss_pred ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCCc----HHHHHHHHHHHhcCC
Q 032034 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQ 77 (148)
Q Consensus 2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~~----~~~W~~lll~~Ige~ 77 (148)
.|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||+|++++++... |++|++|||++|||+
T Consensus 62 ~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~ 141 (217)
T 1ipb_A 62 LISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGES 141 (217)
T ss_dssp EEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCEEEEEECCTTHHHHTHHHHHHHHHHHHHTTT
T ss_pred EEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCCCCEEEEEeccccCcchHHHHHHHHHHHHhhcc
Confidence 5899999999999999999999999999999999999999999999999999999998754 999999999999999
Q ss_pred C-CCCCCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCC--ceeEEEccccc--CCCCCCceeEC
Q 032034 78 F-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDAK--HDNRSKNRYTT 148 (148)
Q Consensus 78 f-~~~~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~--~i~~~~h~~~~--~~~~~~~~~~~ 148 (148)
| +.+++|||||+|+|+++++|+||++++++++.+..|++.++++|++++ .++|++|.++. ++|.++++|+|
T Consensus 142 f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~l~~~~~i~y~~H~d~~~~~~s~~~~~~~~ 217 (217)
T 1ipb_A 142 FDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 217 (217)
T ss_dssp TGGGGGGEEEEEEECCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHTCCTTCCCEEEEGGGCCCSTTCCCCCSEEC
T ss_pred ccccCCccceEEEEeecCCcEEEEECCCCCCHHHHHHHHHHHHHHhCCCCCCeEEEEEchHhhhccCCCCceeeeC
Confidence 9 667899999999999999999999999999989999999999999987 58999999987 66788999986
No 5
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*
Probab=100.00 E-value=4.1e-55 Score=339.86 Aligned_cols=147 Identities=30% Similarity=0.615 Sum_probs=137.9
Q ss_pred ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCC-CcHHHHHHHHHHHhcCCC-C
Q 032034 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKG-KSDTSWLYTLLAMIGEQF-D 79 (148)
Q Consensus 2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~-~~~~~W~~lll~~Ige~f-~ 79 (148)
.|++|+|||+||++|+||++|++|+.++||||||+||+||||||+|++||+|+++++++ ..|++|++|+|++|||+| +
T Consensus 35 ~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED~~N~~GGkw~i~~~k~~~~d~~W~~lll~~IGe~f~~ 114 (189)
T 3hxi_A 35 KVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDT 114 (189)
T ss_dssp EEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTSHHHHTCEEEEEECCTTSCHHHHHHHHHHHHHTTCCSS
T ss_pred EEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCCCcCCCCCcEEEEEecCCCcHHHHHHHHHHHHhcCcccc
Confidence 58999999999999999999999999999999999999999999999999999999997 479999999999999999 5
Q ss_pred CCCC--eeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCc--eeEEEccccc--CCCCCCceeEC
Q 032034 80 HGDE--ICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDAK--HDNRSKNRYTT 148 (148)
Q Consensus 80 ~~~~--I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~--i~~~~h~~~~--~~~~~~~~~~~ 148 (148)
.+++ |||||+|+|+++++|+||++++++++.+.+|++.++++|+++++ ++|++|+++. ++|.++++|+|
T Consensus 115 ~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~~~i~y~~H~d~~~~~~s~~~~~~~~ 189 (189)
T 3hxi_A 115 DEEDRQICGAVFQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLELEDTIYFQPVSDQRSQTRGSDICTGKYEI 189 (189)
T ss_dssp HHHHHHEEEEEEECCTTCCEEEEEESCSCCHHHHHHHHHHHHHHHTCCSCCEEEEHHHHHHCCTTCC-CCCSEEC
T ss_pred cCCCceeeeEEEEeccCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCcCCCCeEEEEEchhhhhcCCCCCCceEeC
Confidence 5667 99999999999999999999999999999999999999999976 8999999987 67788999986
No 6
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Probab=100.00 E-value=8.3e-54 Score=333.89 Aligned_cols=136 Identities=37% Similarity=0.696 Sum_probs=131.6
Q ss_pred ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCC
Q 032034 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHG 81 (148)
Q Consensus 2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~~~~~W~~lll~~Ige~f~~~ 81 (148)
.|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||+|+++++++..|++|++|||++|||+|+.+
T Consensus 45 ~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GGkw~i~~~k~~~d~~W~~llLa~IGE~f~~~ 124 (195)
T 2jgb_A 45 QIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVG 124 (195)
T ss_dssp EEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTTTTTCEEEEEEECTTCHHHHHHHHHHHHHTTCSCCT
T ss_pred EEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCCCCCCCcEEEEEeCcccHHHHHHHHHHHHhcCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999899999999999999999988
Q ss_pred CCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCc--eeEEEccccc
Q 032034 82 DEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDAK 137 (148)
Q Consensus 82 ~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~--i~~~~h~~~~ 137 (148)
++|||||+|+|.++++|+||++++++++.+..|++.++++|++++. ++|++|+++.
T Consensus 125 d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~l~~~~~~~y~~H~d~~ 182 (195)
T 2jgb_A 125 EEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSI 182 (195)
T ss_dssp TCEEEEEEEECSSCEEEEEEESCTTCHHHHHHHHHHHHHHCCCCTTCCEEEEEHHHHH
T ss_pred CceeeeEEEEecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCeEEEEEchHhh
Confidence 9999999999999999999999999999999999999999999764 8999999987
No 7
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Probab=100.00 E-value=3.8e-53 Score=334.05 Aligned_cols=145 Identities=33% Similarity=0.664 Sum_probs=135.3
Q ss_pred ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCC--CCcHHHHHHHHHHHhcCCCC
Q 032034 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPK--GKSDTSWLYTLLAMIGEQFD 79 (148)
Q Consensus 2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k--~~~~~~W~~lll~~Ige~f~ 79 (148)
.|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||+|+++++. ...|++|++|||++|||+|+
T Consensus 64 ~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~ 143 (213)
T 1ap8_A 64 PVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETID 143 (213)
T ss_dssp EEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTTTSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTC
T ss_pred EEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCCCCCCCEEEEEECCCcchHHHHHHHHHHHHhcCccc
Confidence 5899999999999999999999999999999999999999999999999999999842 35699999999999999998
Q ss_pred CCC-CeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCC--ceeEEEcccccCCCCCCceeEC
Q 032034 80 HGD-EICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDAKHDNRSKNRYTT 148 (148)
Q Consensus 80 ~~~-~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~--~i~~~~h~~~~~~~~~~~~~~~ 148 (148)
..+ +|||||+|+|+++++|+||++++ +++.+..|++.|+++|++++ .+.|++|.++.. +.+|++|+|
T Consensus 144 ~~~deIcGvvvsvR~~~~~IsIW~~~~-~~~~~~~Ig~~lk~~L~l~~~~~i~y~~H~d~~~-~~~k~~~~~ 213 (213)
T 1ap8_A 144 EDDSQINGVVLSIRKGGNKFALWTKSE-DKEPLLRIGGKFKQVLKLTDDGHLEFFPHSSANG-RHPQPSITL 213 (213)
T ss_dssp SSTTTEEEEEEECCTTCEEEEEEESSS-CHHHHHHHHHHHHHHTTCCSSCCCEEECGGGGGC-CCSCCSEEC
T ss_pred CCCCcEeEEEEEeecCCcEEEEEcCCC-CHHHHHHHHHHHHHHhCCCCCCeEEEEEchhhhc-ccCccceEC
Confidence 666 89999999999999999999999 88888999999999999964 599999999886 888999986
No 8
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=100.00 E-value=5.9e-52 Score=333.72 Aligned_cols=147 Identities=39% Similarity=0.808 Sum_probs=137.7
Q ss_pred ceeeeccHHHHHHHhcCCCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEEEEeCCCCc---HHHHHHHHHHHhcCCC
Q 032034 2 VLKSFHSSFSVFSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQF 78 (148)
Q Consensus 2 ~i~~f~TVE~Fw~~y~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~w~i~~~k~~~---~~~W~~lll~~Ige~f 78 (148)
.|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+|||+|++++++... |++|++|+|++|||+|
T Consensus 95 ~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~N~~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~ 174 (248)
T 4axg_A 95 EITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAF 174 (248)
T ss_dssp EEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTTTTTCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCS
T ss_pred EEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCccCCCccEEEEEecccchhHHHHHHHHHHHHHHhCcC
Confidence 4899999999999999999999999999999999999999999999999999999988664 7899999999999999
Q ss_pred CCCCCeeeEEEEecCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCCC--ceeEEEccccc--CCCCCCceeEC
Q 032034 79 DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDAK--HDNRSKNRYTT 148 (148)
Q Consensus 79 ~~~~~I~Giv~s~R~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~--~i~~~~h~~~~--~~~~~~~~~~~ 148 (148)
+.+++|||||+|+|+++++|+||++++++++.+..|++.++++|+++. .+.|+.|.++. .+|.+|++|+|
T Consensus 175 ~~~~~I~Gi~is~R~~~~~I~IW~~~~~~~~~~~~I~~~lk~~L~l~~~~~i~yk~H~ds~~~~~s~~k~~y~v 248 (248)
T 4axg_A 175 DHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYTL 248 (248)
T ss_dssp SCGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHHTTCCTTSCEEEEETGGGCCCC--CCCCSEEC
T ss_pred CCCCceeceEEEecCCCCEEEEeCCCCcCHHHHHHHHHHHHHHhCCCCCCeEEEeehhhhhhccCCCCceeEeC
Confidence 988899999999999999999999999999999999999999999965 48999999986 78899999986
No 9
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A
Probab=99.61 E-value=1.8e-15 Score=121.01 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=86.3
Q ss_pred CCCCCCcEEEEEeCC-CCcHHHHHHHHHHHhcCCCCCCCCeeeEEEEecCC---CcEEEEEcCCCCCHHHHHHHHHHHHH
Q 032034 45 PVCANGGKWTVIFPK-GKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRAR---QEKISLWTKNASNEAAQMSIGKQWKE 120 (148)
Q Consensus 45 ~~N~nGG~w~i~~~k-~~~~~~W~~lll~~Ige~f~~~~~I~Giv~s~R~~---~~~IsIW~~~~~~~~~~~~I~~~~k~ 120 (148)
+.|..||||+|.+++ ...|++|+++++++|+++ +||++|+.|.. +.+|+||++|..+.+.+.+|++.|++
T Consensus 121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~g~------L~gAKVstr~~~~~~~vIcVYT~D~~D~edV~RV~~~Lre 194 (251)
T 1ztp_A 121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGR------LQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRA 194 (251)
T ss_dssp HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHHTS------CSEEEECCBCSSSCCEEEEEEESCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCceEEEecChHHHHHHHHHHHHHHHHhCc------eeEEEEecCCCCCCCCEEEEECCCcCCHHHHHHHHHHHHH
Confidence 468999999999988 667999999999999765 59999999986 79999999999999999999999999
Q ss_pred hcCCCCceeEEEcccccCCCCCCceeE
Q 032034 121 LLDYSDTIGFIFHEDAKHDNRSKNRYT 147 (148)
Q Consensus 121 ~L~l~~~i~~~~h~~~~~~~~~~~~~~ 147 (148)
|++...+.|++|.++..++..+|+|.
T Consensus 195 -LGl~~~I~YK~D~~T~~Giy~~n~~~ 220 (251)
T 1ztp_A 195 -AGIKCLLTYKPDVYTYLGIYRANRWH 220 (251)
T ss_dssp -TTCCSCEEEEEHHHHHTTCCSSCSSC
T ss_pred -cCCCcceeeccchHhhcCCccCCcce
Confidence 99987899999999887777777764
No 10
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=64.17 E-value=2.4 Score=27.32 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=16.2
Q ss_pred CCCCCceeeeecCCCccCCCCC
Q 032034 24 KLAVGADFYCFKNKIEPKWEDP 45 (148)
Q Consensus 24 ~l~~~~~~~lFk~gI~P~WED~ 45 (148)
+|..|+.+|+||+|-..| ||.
T Consensus 11 ~LkDGstvyiFKDGKMam-Edk 31 (74)
T 2k0q_A 11 DLQDGSKVHVFKDGKMGM-ENK 31 (74)
T ss_dssp EBTTSCEEEEETTSCEEE-ECT
T ss_pred ecCCCcEEEEEcCCceeh-hhh
Confidence 578999999999996553 443
No 11
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=56.58 E-value=3.8 Score=20.76 Aligned_cols=12 Identities=50% Similarity=0.902 Sum_probs=9.3
Q ss_pred CCCccCCCCCCC
Q 032034 36 NKIEPKWEDPVC 47 (148)
Q Consensus 36 ~gI~P~WED~~N 47 (148)
+-.+|-|||++.
T Consensus 13 dkyepfwedee~ 24 (26)
T 1nrp_R 13 DKYEPFWEDEEX 24 (26)
T ss_pred cccCcccccccc
Confidence 356899999864
No 12
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=50.76 E-value=4.8 Score=20.53 Aligned_cols=11 Identities=55% Similarity=0.990 Sum_probs=8.7
Q ss_pred CCCccCCCCCC
Q 032034 36 NKIEPKWEDPV 46 (148)
Q Consensus 36 ~gI~P~WED~~ 46 (148)
+-.+|-|||++
T Consensus 13 dkyepfwedee 23 (27)
T 1nro_R 13 DKYEPFWEDEE 23 (27)
T ss_pred cccCccccchh
Confidence 35689999985
No 13
>3hki_C Proteinase-activated receptor 1; serine protease, acute phase, blood coagulation, cleavage on basic residues, disulfide bond; HET: NAG; 2.20A {Homo sapiens} PDB: 3hkj_C*
Probab=36.58 E-value=13 Score=18.32 Aligned_cols=12 Identities=50% Similarity=0.930 Sum_probs=8.9
Q ss_pred cCCCccCCCCCC
Q 032034 35 KNKIEPKWEDPV 46 (148)
Q Consensus 35 k~gI~P~WED~~ 46 (148)
-+|.+|+|||..
T Consensus 8 ~~~fEp~~~dee 19 (21)
T 3hki_C 8 NDKYEPFWEDEE 19 (26)
T ss_pred cccccccccccc
Confidence 357889999943
No 14
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=32.23 E-value=31 Score=21.35 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=12.6
Q ss_pred eeeccHHHHHHHhcCC
Q 032034 4 KSFHSSFSVFSLYNNI 19 (148)
Q Consensus 4 ~~f~TVE~Fw~~y~~i 19 (148)
..+=|.++||..+.++
T Consensus 39 s~vIse~eFW~~r~~l 54 (61)
T 2dii_A 39 SQVISAEEFWANRLNV 54 (61)
T ss_dssp TTSSCHHHHHHHHCSS
T ss_pred hCcCCHHHHHHHHHHh
Confidence 3355889999999884
Done!