BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032035
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic
OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2
Length = 174
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Query: 60 VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTW 119
+ K+ Q W+ +D+ + L FAG+VALW S +I+AID+LP++P LEL+GI ++ W
Sbjct: 86 IVKTAQEAWEKV-DDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGW 144
Query: 120 FVYRYLLFKPDREELFQIINKSVSDILG 147
F Y+ L+FKPDRE LF+ + + DILG
Sbjct: 145 FTYKNLVFKPDREALFEKVKSTYKDILG 172
>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis
thaliana GN=At4g01150 PE=1 SV=1
Length = 164
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 25 TLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFA 84
T+P L L N Q + +AS E + S + + ++ WD E++ ++ G
Sbjct: 42 TVP-LKLVSGNGLQKVELLKTRASSEETSSIDTNELITDLKEKWDGL-ENKSTVLIYGGG 99
Query: 85 GIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSD 144
IVA+W S ++ AI+ +P++P +EL+G+ ++ WFVYRYLLFK R+EL + I
Sbjct: 100 AIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKK 159
Query: 145 ILGQ 148
I G
Sbjct: 160 IAGS 163
>sp|Q119Z5|SYE_TRIEI Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101)
GN=gltX PE=3 SV=1
Length = 881
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 95 LITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ 148
+I A+D +PI+ ELIG+++ WFVYRYLL + +R+EL I +I G+
Sbjct: 826 VIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNRQELLDKIENIKREIFGK 879
>sp|Q8YX97|SYV_NOSS1 Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=valS PE=3 SV=1
Length = 1014
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 76 LGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELF 135
L IGL AG+V L ++ + +D +P + E++G+ +S WFV R LL P R+
Sbjct: 845 LKTIGLVIAGLVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPARKRFL 904
>sp|Q02896|YDC1_YEAST Alkaline ceramidase YDC1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YDC1 PE=1 SV=1
Length = 317
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 44 VAKASGESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFA 84
+A+ S + S +T F S + W N E R LIG+GF+
Sbjct: 36 IAEWSNTITNSIFLMTAFYSTYSAWRNKLETRYILIGMGFS 76
>sp|Q9KW13|RPOC_SHEVI DNA-directed RNA polymerase subunit beta' OS=Shewanella violacea
GN=rpoC PE=3 SV=1
Length = 1409
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Query: 35 NEKQNCLAIVAKASGESSESSTSLTVFKSVQNVWD 69
++K+N A+ AKASG++SE +T++T ++ +N+ D
Sbjct: 1367 HQKRNA-ALAAKASGKTSEQATTITASEAERNLAD 1400
>sp|Q91E95|RDRP_ROTHC RNA-directed RNA polymerase OS=Rotavirus C (isolate Human/United
Kingdom/Bristol/1989) PE=3 SV=1
Length = 1090
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 121 VYRYLLFKPDREELFQIINKSVSDILG 147
+ +Y ++ P EEL++I+NKSV I G
Sbjct: 936 IKQYSVYTPGIEELYEIVNKSVDTIRG 962
>sp|P26190|RDRP_ROTPC RNA-directed RNA polymerase OS=Rotavirus C (strain Pig/United
States/Cowden/1980) PE=3 SV=1
Length = 1082
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 121 VYRYLLFKPDREELFQIINKSVSDILG 147
+ +Y ++ P EEL++++NKS+ I G
Sbjct: 928 IKQYSVYTPGIEELYEVVNKSIDSIRG 954
>sp|Q9ZFG9|ALGE7_AZOVI Poly(beta-D-mannuronate) C5 epimerase 7 OS=Azotobacter vinelandii
GN=algE7 PE=1 SV=1
Length = 856
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 16/62 (25%)
Query: 47 ASGESSESSTSLTVFKSVQNVWDNSS---------EDRLGLIGLGFAGI-------VALW 90
+ GE ++ +V S QN DN S EDR+ L GLGF+G+ + LW
Sbjct: 591 SGGEGADIFRFTSVADSYQNSGDNFSDLILDFDPGEDRIDLSGLGFSGLGDGHNGTLLLW 650
Query: 91 AS 92
S
Sbjct: 651 TS 652
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,427,966
Number of Sequences: 539616
Number of extensions: 1917274
Number of successful extensions: 4862
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4851
Number of HSP's gapped (non-prelim): 18
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)