Query 032035
Match_columns 148
No_of_seqs 132 out of 187
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 08:42:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02777 photosystem I P subun 100.0 2E-45 4.3E-50 292.2 13.9 127 21-148 26-166 (167)
2 PF14159 CAAD: CAAD domains of 100.0 2.5E-33 5.4E-38 203.2 9.6 88 59-147 3-90 (90)
3 PF14159 CAAD: CAAD domains of 87.2 1.3 2.9E-05 32.1 4.5 46 61-107 1-47 (90)
4 PF12911 OppC_N: N-terminal TM 82.0 3.3 7.1E-05 26.4 4.1 27 63-89 4-30 (56)
5 PF11364 DUF3165: Protein of u 81.2 4.8 0.0001 29.4 5.2 52 81-132 29-80 (81)
6 PF01810 LysE: LysE type trans 81.0 6.2 0.00013 30.3 6.1 37 96-132 48-85 (191)
7 PRK09304 arginine exporter pro 78.1 6.2 0.00013 31.4 5.4 34 93-126 56-89 (207)
8 PRK10958 leucine export protei 74.1 8.7 0.00019 30.8 5.4 34 93-126 63-96 (212)
9 PRK10323 cysteine/O-acetylseri 73.4 9.5 0.00021 30.1 5.3 51 77-127 42-93 (195)
10 TIGR00948 2a75 L-lysine export 72.9 12 0.00026 28.7 5.7 37 91-127 40-76 (177)
11 PRK10229 threonine efflux syst 72.4 11 0.00023 29.7 5.4 34 93-126 58-91 (206)
12 PRK10520 rhtB homoserine/homos 71.3 12 0.00025 29.5 5.4 37 91-127 57-93 (205)
13 TIGR00949 2A76 The Resistance 70.1 14 0.0003 28.3 5.4 34 93-126 41-74 (185)
14 PF05251 UPF0197: Uncharacteri 68.1 4.9 0.00011 29.0 2.4 36 102-137 16-51 (77)
15 PF11190 DUF2976: Protein of u 65.4 20 0.00043 26.2 5.2 74 50-127 5-82 (87)
16 PF11351 DUF3154: Protein of u 64.6 17 0.00037 27.5 4.9 22 102-125 95-116 (123)
17 PF10031 DUF2273: Small integr 52.6 62 0.0013 21.3 5.4 33 65-100 1-34 (51)
18 PF10864 DUF2663: Protein of u 51.9 1E+02 0.0022 24.2 7.3 15 65-80 10-24 (130)
19 PF11833 DUF3353: Protein of u 48.9 73 0.0016 26.0 6.4 54 72-125 136-194 (194)
20 KOG4452 Predicted membrane pro 47.7 23 0.00051 25.5 3.0 40 102-141 18-58 (79)
21 COG1280 RhtB Putative threonin 45.9 40 0.00087 27.1 4.4 38 91-128 57-94 (208)
22 PF10958 DUF2759: Protein of u 45.4 49 0.0011 22.3 4.1 42 85-126 3-44 (52)
23 PF06072 Herpes_US9: Alphaherp 45.4 92 0.002 21.6 5.5 46 54-99 8-55 (60)
24 PF11833 DUF3353: Protein of u 44.8 85 0.0018 25.7 6.2 59 59-124 74-135 (194)
25 PF01616 Orbi_NS3: Orbivirus N 43.8 1.3E+02 0.0028 25.1 7.2 87 59-146 74-167 (195)
26 PF08711 Med26: TFIIS helical 42.3 86 0.0019 19.7 4.9 50 95-145 2-51 (53)
27 TIGR03745 conj_TIGR03745 integ 42.2 80 0.0017 24.0 5.3 50 49-102 20-69 (104)
28 PF06522 B12D: NADH-ubiquinone 40.9 20 0.00043 24.9 1.7 19 112-130 15-33 (73)
29 PF13779 DUF4175: Domain of un 40.8 1.2E+02 0.0027 30.1 7.6 60 80-140 7-70 (820)
30 COG4709 Predicted membrane pro 39.3 89 0.0019 26.2 5.6 22 81-102 89-110 (195)
31 PF01102 Glycophorin_A: Glycop 39.2 48 0.001 25.5 3.8 20 112-131 78-97 (122)
32 PF13124 DUF3963: Protein of u 37.4 51 0.0011 21.0 3.0 20 72-91 20-39 (40)
33 COG4956 Integral membrane prot 36.3 1.6E+02 0.0035 26.7 7.0 54 81-136 84-139 (356)
34 PF05552 TM_helix: Conserved T 35.0 69 0.0015 20.4 3.5 39 63-101 3-41 (53)
35 PF10192 GpcrRhopsn4: Rhodopsi 34.0 89 0.0019 25.8 4.8 70 72-141 170-248 (257)
36 PF10710 DUF2512: Protein of u 33.6 80 0.0017 24.5 4.2 71 59-131 41-115 (136)
37 PRK07193 fliF flagellar MS-rin 33.1 57 0.0012 30.7 3.9 29 59-88 7-39 (552)
38 PF07787 DUF1625: Protein of u 31.1 80 0.0017 26.0 4.1 26 83-108 192-218 (248)
39 PRK09848 glucuronide transport 30.8 1.5E+02 0.0033 25.2 5.9 34 110-143 413-446 (448)
40 PF12263 DUF3611: Protein of u 30.5 98 0.0021 25.3 4.4 36 104-139 59-105 (183)
41 PF07332 DUF1469: Protein of u 29.3 2.2E+02 0.0047 20.4 7.6 27 118-144 90-121 (121)
42 COG2076 EmrE Membrane transpor 28.9 2.1E+02 0.0046 21.6 5.7 51 59-120 14-64 (106)
43 PRK06007 fliF flagellar MS-rin 27.3 74 0.0016 29.7 3.6 21 59-79 7-28 (542)
44 PF06686 SpoIIIAC: Stage III s 27.2 63 0.0014 21.1 2.3 30 108-138 2-31 (58)
45 PF02674 Colicin_V: Colicin V 26.9 1.2E+02 0.0025 22.2 4.0 27 75-101 25-51 (146)
46 PF06716 DUF1201: Protein of u 26.7 37 0.00079 22.9 1.1 17 114-130 24-40 (54)
47 PF04418 DUF543: Domain of unk 26.7 88 0.0019 22.2 3.1 30 63-92 17-48 (75)
48 PF12729 4HB_MCP_1: Four helix 26.3 2.4E+02 0.0051 19.9 7.1 64 82-145 20-91 (181)
49 PRK11677 hypothetical protein; 26.0 1.6E+02 0.0035 23.0 4.8 28 117-144 16-44 (134)
50 TIGR03717 R_switched_YjbE inte 23.7 2.7E+02 0.0058 22.2 5.8 47 76-126 128-174 (176)
51 TIGR00206 fliF flagellar basal 22.8 1.2E+02 0.0026 28.6 4.0 14 59-72 7-20 (555)
52 PF06295 DUF1043: Protein of u 22.2 1.4E+02 0.0031 22.5 3.8 27 118-144 13-40 (128)
53 PRK00888 ftsB cell division pr 21.6 73 0.0016 23.5 2.0 12 111-122 12-23 (105)
54 PRK06012 flhA flagellar biosyn 21.5 1.8E+02 0.004 28.4 5.1 30 96-125 301-330 (697)
55 PRK02913 hypothetical protein; 21.4 64 0.0014 26.0 1.8 48 80-130 45-95 (150)
56 PLN00092 photosystem I reactio 21.3 1.3E+02 0.0027 24.0 3.3 20 108-127 109-128 (137)
57 PF04367 DUF502: Protein of un 21.3 2.7E+02 0.0059 20.2 5.0 30 79-108 11-40 (108)
58 PF10003 DUF2244: Integral mem 21.2 2.9E+02 0.0062 21.0 5.3 24 103-126 36-61 (140)
59 PF14372 DUF4413: Domain of un 20.9 1.1E+02 0.0024 21.9 2.8 20 59-79 35-54 (101)
60 PF14316 DUF4381: Domain of un 20.8 1.2E+02 0.0026 23.0 3.1 32 111-142 31-62 (146)
61 PRK10650 multidrug efflux syst 20.6 3.7E+02 0.0079 20.0 5.9 51 59-120 19-69 (109)
No 1
>PLN02777 photosystem I P subunit (PSI-P)
Probab=100.00 E-value=2e-45 Score=292.24 Aligned_cols=127 Identities=42% Similarity=0.851 Sum_probs=117.4
Q ss_pred ccccCCCCCCCCCcc-----------hhhhhhhHhHhhcCCCccc--cchh-hhhHHHHHHHhhhhcchhHHHHHHHHHH
Q 032035 21 SLFITLPKLPLSPLN-----------EKQNCLAIVAKASGESSES--STSL-TVFKSVQNVWDNSSEDRLGLIGLGFAGI 86 (148)
Q Consensus 21 ~~~~~~~~~~~~~~~-----------~~~~~~~v~~~a~~~~~~~--~~~~-e~~~~lq~~W~~~~e~~~~v~~l~~~ai 86 (148)
+++..+|.||.|+.. +|+..|||++||++|+|++ ++++ |+++++||+||+ .|||++++++++++|
T Consensus 26 ~~~~~lp~lppp~~~~~~~~~~~~~~c~~~~r~vv~~a~ge~s~~~~~~~~~ei~k~~~e~Wd~-~EdK~av~~l~~aai 104 (167)
T PLN02777 26 PQCVSLPTLPPPPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPEIVKTVQEAWDK-VEDKYAVSSLAFAGV 104 (167)
T ss_pred CccccCCCCCCCCcccCCCcchhHHHHHHhHHHHHHHhccCCCcccccccHHHHHHHHHHHHhh-hcchhHHHHHHHHHH
Confidence 367788888755432 7789999999999998885 4455 999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHHHHhhhhHhhccccccHHHHHHHHHHhhhhhcCC
Q 032035 87 VALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILGQ 148 (148)
Q Consensus 87 val~~~~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL~~~~R~eL~~~i~~~k~~I~G~ 148 (148)
|++|++.+||+|||+|||+|++||||||||++||+||||+|++|||||+++|+++|++|+|+
T Consensus 105 Val~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk~~IlG~ 166 (167)
T PLN02777 105 VALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTYKEIIGS 166 (167)
T ss_pred HHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999995
No 2
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=100.00 E-value=2.5e-33 Score=203.22 Aligned_cols=88 Identities=41% Similarity=0.731 Sum_probs=84.8
Q ss_pred hhhHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHhhhhHhhccccccHHHHHHHH
Q 032035 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQII 138 (148)
Q Consensus 59 e~~~~lq~~W~~~~e~~~~v~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL~~~~R~eL~~~i 138 (148)
++.+++++.|++ ++++...+++++++++++|++.++++|||+||++|++||+||+||++||+||||+|++|||||.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i 81 (90)
T PF14159_consen 3 KLPEYWGEFFDK-YKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI 81 (90)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence 567788888999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcC
Q 032035 139 NKSVSDILG 147 (148)
Q Consensus 139 ~~~k~~I~G 147 (148)
+++|++|+|
T Consensus 82 ~~~k~~i~G 90 (90)
T PF14159_consen 82 QSLKKEILG 90 (90)
T ss_pred HHHHHHhcC
Confidence 999999998
No 3
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=87.23 E-value=1.3 Score=32.15 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=35.9
Q ss_pred hHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH-HhhccCCchh
Q 032035 61 FKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLIT-AIDKLPIIPN 107 (148)
Q Consensus 61 ~~~lq~~W~~~~e~~~~v~~l~~~aival~~~~~vl~-AId~iPLlp~ 107 (148)
++++++.|++ .++++....+.++++++.-+..-+.. .+|.|--+|-
T Consensus 1 l~~~~~~~~~-~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPl 47 (90)
T PF14159_consen 1 LSKLPEYWGE-FFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPL 47 (90)
T ss_pred CchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 3689999999 99999999999999888776666554 4566655553
No 4
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=81.97 E-value=3.3 Score=26.35 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=21.3
Q ss_pred HHHHHHhhhhcchhHHHHHHHHHHHHH
Q 032035 63 SVQNVWDNSSEDRLGLIGLGFAGIVAL 89 (148)
Q Consensus 63 ~lq~~W~~~~e~~~~v~~l~~~aival 89 (148)
..|+.|.++.+||.+++|+++-.++.+
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~~vl 30 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLILVL 30 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 568899998999999998776655543
No 5
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=81.16 E-value=4.8 Score=29.39 Aligned_cols=52 Identities=15% Similarity=0.368 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHhhhhHhhccccccHH
Q 032035 81 LGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDRE 132 (148)
Q Consensus 81 l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL~~~~R~ 132 (148)
+++.+++++-+..++++.+.-.-+-|-+|=-+|+...++|..|.+.+=++|+
T Consensus 29 i~~v~~~vlLivla~ls~~ki~q~P~Eifv~~~Mi~l~y~alrDi~~l~~k~ 80 (81)
T PF11364_consen 29 IGLVGLVVLLIVLAVLSFIKIFQLPPEIFVGLAMIVLGYFALRDISKLSTKK 80 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 5566777778888889999988888999999999999999999988766654
No 6
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=80.97 E-value=6.2 Score=30.26 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=30.1
Q ss_pred HHHh-hccCCchhHHHHHHHHHHhhhhHhhccccccHH
Q 032035 96 ITAI-DKLPIIPNALELIGILFSTWFVYRYLLFKPDRE 132 (148)
Q Consensus 96 l~AI-d~iPLlp~llELVGigyt~WFvyRyLL~~~~R~ 132 (148)
+.++ +..|.+-..++++|..|..|+.|+.+-.+.+.+
T Consensus 48 ~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~ 85 (191)
T PF01810_consen 48 LSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSSK 85 (191)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 3444 669999999999999999999999987554443
No 7
>PRK09304 arginine exporter protein; Provisional
Probab=78.10 E-value=6.2 Score=31.40 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=28.1
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHhhhhHhhcc
Q 032035 93 VNLITAIDKLPIIPNALELIGILFSTWFVYRYLL 126 (148)
Q Consensus 93 ~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL 126 (148)
.++-.-++..|.+=.++.++|-.|..|..|+-+-
T Consensus 56 ~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~r 89 (207)
T PRK09304 56 FGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFK 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344447899999999999999999999998663
No 8
>PRK10958 leucine export protein LeuE; Provisional
Probab=74.14 E-value=8.7 Score=30.78 Aligned_cols=34 Identities=12% Similarity=0.342 Sum_probs=28.3
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHhhhhHhhcc
Q 032035 93 VNLITAIDKLPIIPNALELIGILFSTWFVYRYLL 126 (148)
Q Consensus 93 ~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL 126 (148)
.++-.-++..|.+-..++++|.+|..|+.||-+-
T Consensus 63 ~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~ 96 (212)
T PRK10958 63 AGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLR 96 (212)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566778999999999999999999998663
No 9
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=73.40 E-value=9.5 Score=30.12 Aligned_cols=51 Identities=12% Similarity=0.249 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhccCCchhHHHHHHHHHHhhhhHhhccc
Q 032035 77 GLIGLGFAGIVALWASVNLI-TAIDKLPIIPNALELIGILFSTWFVYRYLLF 127 (148)
Q Consensus 77 ~v~~l~~~aival~~~~~vl-~AId~iPLlp~llELVGigyt~WFvyRyLL~ 127 (148)
..+|...|-++-..++.+.+ .-++..|.+=.++.++|..|..|..||-+-.
T Consensus 42 ~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s 93 (195)
T PRK10323 42 VLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATS 93 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555444444444 3456889999999999999999999997743
No 10
>TIGR00948 2a75 L-lysine exporter.
Probab=72.88 E-value=12 Score=28.70 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=29.7
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhhhhHhhccc
Q 032035 91 ASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLF 127 (148)
Q Consensus 91 ~~~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL~ 127 (148)
...++-.-++..|.+=..+.++|-.|..|..||-+-.
T Consensus 40 ~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~ 76 (177)
T TIGR00948 40 GVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKT 76 (177)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445667899999999999999999999987653
No 11
>PRK10229 threonine efflux system; Provisional
Probab=72.43 E-value=11 Score=29.70 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=29.0
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHhhhhHhhcc
Q 032035 93 VNLITAIDKLPIIPNALELIGILFSTWFVYRYLL 126 (148)
Q Consensus 93 ~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL 126 (148)
.++-.-+...|.+-.++.++|..|..|+.|+-+-
T Consensus 58 ~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~ 91 (206)
T PRK10229 58 LGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLR 91 (206)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567888999999999999999999998775
No 12
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=71.30 E-value=12 Score=29.51 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=30.5
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhhhhHhhccc
Q 032035 91 ASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLF 127 (148)
Q Consensus 91 ~~~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL~ 127 (148)
...++-.-++..|.+=..++++|..|..|+.+|-+-.
T Consensus 57 ~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 57 VGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3345555678889999999999999999999997754
No 13
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=70.05 E-value=14 Score=28.32 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=28.7
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHhhhhHhhcc
Q 032035 93 VNLITAIDKLPIIPNALELIGILFSTWFVYRYLL 126 (148)
Q Consensus 93 ~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL 126 (148)
.++-.-++..|.+-..+.++|-.|..|+.||-+-
T Consensus 41 ~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~ 74 (185)
T TIGR00949 41 LGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLR 74 (185)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788999999999999999999998664
No 14
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=68.13 E-value=4.9 Score=28.98 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=26.5
Q ss_pred cCCchhHHHHHHHHHHhhhhHhhccccccHHHHHHH
Q 032035 102 LPIIPNALELIGILFSTWFVYRYLLFKPDREELFQI 137 (148)
Q Consensus 102 iPLlp~llELVGigyt~WFvyRyLL~~~~R~eL~~~ 137 (148)
.|.+.-+|=.+|+.+++||........+.++.+.++
T Consensus 16 ~p~La~vll~iGl~fta~Ffiyevts~k~~r~i~kE 51 (77)
T PF05251_consen 16 YPHLAVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKE 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHH
Confidence 355666788899999999998888866555444444
No 15
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=65.41 E-value=20 Score=26.24 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=50.5
Q ss_pred CCccccchhhhhHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhccC----CchhHHHHHHHHHHhhhhHhhc
Q 032035 50 ESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLP----IIPNALELIGILFSTWFVYRYL 125 (148)
Q Consensus 50 ~~~~~~~~~e~~~~lq~~W~~~~e~~~~v~~l~~~aival~~~~~vl~AId~iP----Llp~llELVGigyt~WFvyRyL 125 (148)
|.|+..+.....+.+|.- ..|-..+.+++++++..+++..+.+++-|++- =-..+-..+.+|...-++.=||
T Consensus 5 e~Ps~g~~~~~~~~i~~y----~~d~~~l~gLv~~a~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwL 80 (87)
T PF11190_consen 5 EPPSSGGGGGIMETIKGY----AKDGVLLLGLVLAAAAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWL 80 (87)
T ss_pred CCCCCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHH
Confidence 334333444777777774 66788899999999999999999999998774 3344555555555555544444
Q ss_pred cc
Q 032035 126 LF 127 (148)
Q Consensus 126 L~ 127 (148)
+.
T Consensus 81 l~ 82 (87)
T PF11190_consen 81 LT 82 (87)
T ss_pred HH
Confidence 43
No 16
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=64.62 E-value=17 Score=27.47 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=18.7
Q ss_pred cCCchhHHHHHHHHHHhhhhHhhc
Q 032035 102 LPIIPNALELIGILFSTWFVYRYL 125 (148)
Q Consensus 102 iPLlp~llELVGigyt~WFvyRyL 125 (148)
+| .++..|.|+|++++|+.|..
T Consensus 95 vp--e~lw~Llg~~vlgy~~~Rs~ 116 (123)
T PF11351_consen 95 VP--EPLWWLLGAGVLGYFGARSQ 116 (123)
T ss_pred CC--HHHHHHHHHHHhhhHHHhhH
Confidence 55 47789999999999999964
No 17
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=52.57 E-value=62 Score=21.28 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=21.9
Q ss_pred HHHHhhhhcchhHHHHHHHHHHHHH-HHHHHHHHHhh
Q 032035 65 QNVWDNSSEDRLGLIGLGFAGIVAL-WASVNLITAID 100 (148)
Q Consensus 65 q~~W~~~~e~~~~v~~l~~~aival-~~~~~vl~AId 100 (148)
||.|++ .+..+++.++|.++++ ++..+.-.++-
T Consensus 1 ~e~~~~---~~~~iiG~~~G~ila~l~l~~GF~~tl~ 34 (51)
T PF10031_consen 1 MEFWKN---HRGKIIGGLIGLILALLILTFGFWKTLF 34 (51)
T ss_pred ChHHHH---CcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356665 4556667777777764 77777777764
No 18
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=51.93 E-value=1e+02 Score=24.23 Aligned_cols=15 Identities=7% Similarity=0.266 Sum_probs=10.6
Q ss_pred HHHHhhhhcchhHHHH
Q 032035 65 QNVWDNSSEDRLGLIG 80 (148)
Q Consensus 65 q~~W~~~~e~~~~v~~ 80 (148)
|++||+ ++.+-....
T Consensus 10 K~K~e~-l~k~~~~~~ 24 (130)
T PF10864_consen 10 KEKWER-LKKQHLFWQ 24 (130)
T ss_pred HHHHHH-HHHHHHHHH
Confidence 789999 887554443
No 19
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=48.93 E-value=73 Score=26.04 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=36.9
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCch-----hHHHHHHHHHHhhhhHhhc
Q 032035 72 SEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIP-----NALELIGILFSTWFVYRYL 125 (148)
Q Consensus 72 ~e~~~~v~~l~~~aival~~~~~vl~AId~iPLlp-----~llELVGigyt~WFvyRyL 125 (148)
-.+....+++.+++++.-|+.++++...-..+.+| ..++-.=.....|++.-+|
T Consensus 136 ~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~s~fL 194 (194)
T PF11833_consen 136 ERKLGRAFLWTLGGLVVGLILGSLLASWLPVDIVPGPWSPEQLVSLFTYILLWLVSLFL 194 (194)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 55677888999999999999999998777666555 3333333334456655443
No 20
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=47.69 E-value=23 Score=25.50 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=27.2
Q ss_pred cCCchhHHHHHHHHHHhhhhHhhcc-ccccHHHHHHHHHHh
Q 032035 102 LPIIPNALELIGILFSTWFVYRYLL-FKPDREELFQIINKS 141 (148)
Q Consensus 102 iPLlp~llELVGigyt~WFvyRyLL-~~~~R~eL~~~i~~~ 141 (148)
.|.+..++--||+.++.||..--.. .|.+|.-+.+-+-++
T Consensus 18 fPhLttvLl~iG~fftAwFf~~~VtStKy~r~l~KELlIsl 58 (79)
T KOG4452|consen 18 FPHLTTVLLGIGLFFTAWFFMIQVTSTKYNRNLLKELLISL 58 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHheeEecchhhHHHHHHHHHHH
Confidence 6888888899999999998754443 455665444443333
No 21
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=45.87 E-value=40 Score=27.06 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=31.0
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhhhhHhhcccc
Q 032035 91 ASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFK 128 (148)
Q Consensus 91 ~~~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL~~ 128 (148)
...++-.-+..-|.+-.++.++|-.|..|..++-+..+
T Consensus 57 ~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 57 AALGLAALLATSPALFTVLKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444467888999999999999999999999977644
No 22
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=45.42 E-value=49 Score=22.35 Aligned_cols=42 Identities=17% Similarity=0.444 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHhhhhHhhcc
Q 032035 85 GIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLL 126 (148)
Q Consensus 85 aival~~~~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL 126 (148)
++|++-..-+++.++.+=-+++-+|-++-+..-|||...-++
T Consensus 3 ~Lvtlla~~g~~rslK~KN~l~i~F~~~t~~VFGwFtimTii 44 (52)
T PF10958_consen 3 GLVTLLAAFGVLRSLKNKNFLGIGFALVTVAVFGWFTIMTII 44 (52)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778889999999999999999999999999876544
No 23
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=45.39 E-value=92 Score=21.62 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=27.2
Q ss_pred ccchhhhhHHHHHHHhhhh--cchhHHHHHHHHHHHHHHHHHHHHHHh
Q 032035 54 SSTSLTVFKSVQNVWDNSS--EDRLGLIGLGFAGIVALWASVNLITAI 99 (148)
Q Consensus 54 ~~~~~e~~~~lq~~W~~~~--e~~~~v~~l~~~aival~~~~~vl~AI 99 (148)
..|..||+..+..+=.... ++.-.+...++++++++-+.++.++++
T Consensus 8 nETA~~FL~RvGr~q~~~r~RrRrc~~~v~~v~~~~~~c~~S~~lG~~ 55 (60)
T PF06072_consen 8 NETATEFLRRVGRQQHASRRRRRRCRLAVAIVFAVVALCVLSGGLGAL 55 (60)
T ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446699999866432211 122333445555666777888887776
No 24
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=44.81 E-value=85 Score=25.66 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=39.6
Q ss_pred hhhHHHHHH---HhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHhhhhHhh
Q 032035 59 TVFKSVQNV---WDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRY 124 (148)
Q Consensus 59 e~~~~lq~~---W~~~~e~~~~v~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WFvyRy 124 (148)
....++|.. ||. .+..-...-.++.+++++|....- -+=.|++.=-+|++.+.||.+|.
T Consensus 74 ~~p~wl~~~~~~~~~-P~~~~l~~~~~~f~~L~~~~~~~~------~~~~~~l~Lal~~~~~iyfl~~K 135 (194)
T PF11833_consen 74 PSPPWLQRLLPSFDT-PSSQDLLIRAAAFGALGLWSLLFP------AASGPGLQLALGLGACIYFLNRK 135 (194)
T ss_pred ccchHHHhcccceeC-CCcchHHHHHHHHHHHHHHHHHHc------CCCCcchHHHHHHHHHHHHHHHh
Confidence 445555554 887 777666666777677777766551 22334455568999999999986
No 25
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=43.83 E-value=1.3e+02 Score=25.08 Aligned_cols=87 Identities=9% Similarity=0.132 Sum_probs=44.6
Q ss_pred hhhHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc-CCchhHHHH---H--HH-HHHhhhhHhhccccccH
Q 032035 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKL-PIIPNALEL---I--GI-LFSTWFVYRYLLFKPDR 131 (148)
Q Consensus 59 e~~~~lq~~W~~~~e~~~~v~~l~~~aival~~~~~vl~AId~i-PLlp~llEL---V--Gi-gyt~WFvyRyLL~~~~R 131 (148)
.++..+|..-.. .++|..++-++.-...++-+...++.++.++ +-++..++- + ++ +.+.-+..-.+.-+..|
T Consensus 74 ~~L~~L~~el~~-~kRk~~il~~~~li~a~v~l~ts~~~~~~~~~~~~~~~l~~~~~~~~~~~~inL~~T~~~~~~~r~~ 152 (195)
T PF01616_consen 74 QILPKLKHELRK-LKRKRRILHIVELIAAIVALLTSVVMAISDMSPELKSNLKEKNWISITLHVINLIATTAMMFCARIE 152 (195)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777 7777766554333333333333333333332 223333331 0 00 11112222333345668
Q ss_pred HHHHHHHHHhhhhhc
Q 032035 132 EELFQIINKSVSDIL 146 (148)
Q Consensus 132 ~eL~~~i~~~k~~I~ 146 (148)
+.|-++++.+++||.
T Consensus 153 ~~l~~~i~r~kkeI~ 167 (195)
T PF01616_consen 153 RSLQEQIKRLKKEIM 167 (195)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999985
No 26
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=42.28 E-value=86 Score=19.69 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=35.4
Q ss_pred HHHHhhccCCchhHHHHHHHHHHhhhhHhhccccccHHHHHHHHHHhhhhh
Q 032035 95 LITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDI 145 (148)
Q Consensus 95 vl~AId~iPLlp~llELVGigyt~WFvyRyLL~~~~R~eL~~~i~~~k~~I 145 (148)
+++.++++|+=...|+=.|||-++-+..++ -..++=+++...+-+-|+++
T Consensus 2 iL~~L~~l~it~~~L~~T~IGk~V~~l~k~-~~~~~i~~~A~~Li~~Wk~~ 51 (53)
T PF08711_consen 2 ILKVLEKLPITVELLKSTGIGKAVNKLRKH-SENPEIRKLAKELIKKWKRI 51 (53)
T ss_dssp HHHHHHCSS-SHHHHHHHSHHHHHHHHHHC-TS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCHHHHHhCChhHHHHHHHcC-CCCHHHHHHHHHHHHHHhHh
Confidence 578899999999999999999999999999 33333344455554445443
No 27
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=42.20 E-value=80 Score=24.02 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=37.7
Q ss_pred CCCccccchhhhhHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 032035 49 GESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKL 102 (148)
Q Consensus 49 ~~~~~~~~~~e~~~~lq~~W~~~~e~~~~v~~l~~~aival~~~~~vl~AId~i 102 (148)
-|.|++-+...+.+++|+- ..|-..+++++++++..+++..+.+.+-+.+
T Consensus 20 ~e~PS~G~g~g~~~tik~Y----~~dg~~llgL~i~a~aFi~Va~~a~~ty~Ei 69 (104)
T TIGR03745 20 VEAPSRGGGSGIMQTIKNY----GYDGGILLGLLIAAIAFIGVAYHALGTYHEI 69 (104)
T ss_pred CCCCCCCCCcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333233688888885 5678899999999999999999998887765
No 28
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=40.90 E-value=20 Score=24.86 Aligned_cols=19 Identities=37% Similarity=0.747 Sum_probs=13.9
Q ss_pred HHHHHHhhhhHhhcccccc
Q 032035 112 IGILFSTWFVYRYLLFKPD 130 (148)
Q Consensus 112 VGigyt~WFvyRyLL~~~~ 130 (148)
+|++..++|.+|+|+..+|
T Consensus 15 ~a~~~a~~~~~r~l~~~Pd 33 (73)
T PF06522_consen 15 VAVGGATFYLYRLLLTNPD 33 (73)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 4455677999999976554
No 29
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=40.81 E-value=1.2e+02 Score=30.07 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCchhHH----HHHHHHHHhhhhHhhccccccHHHHHHHHHH
Q 032035 80 GLGFAGIVALWASVNLITAIDKLPIIPNAL----ELIGILFSTWFVYRYLLFKPDREELFQIINK 140 (148)
Q Consensus 80 ~l~~~aival~~~~~vl~AId~iPLlp~ll----ELVGigyt~WFvyRyLL~~~~R~eL~~~i~~ 140 (148)
.+-+..++++.++...++.-+.+|...-.. =++|++++.|+..|. ++.++|+|....|+.
T Consensus 7 ~~p~~~v~~lflal~~lGl~~~lp~~~~~~~l~~~~~a~~~al~~~lrr-fr~Pt~~ea~~RLe~ 70 (820)
T PF13779_consen 7 LWPLLSVLALFLALSWLGLWDLLPDWLRWALLAAFAAAALAALVRGLRR-FRWPTRAEALRRLER 70 (820)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHhh
Confidence 344556666777777777777777643332 355666777677766 488999999998875
No 30
>COG4709 Predicted membrane protein [Function unknown]
Probab=39.34 E-value=89 Score=26.19 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 032035 81 LGFAGIVALWASVNLITAIDKL 102 (148)
Q Consensus 81 l~~~aival~~~~~vl~AId~i 102 (148)
..+.+++++|+..+++-+|=.+
T Consensus 89 ~~~~v~i~Lpl~~~vi~~viai 110 (195)
T COG4709 89 GLLAVIIGLPLLIGVILFVIAI 110 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888877544
No 31
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.22 E-value=48 Score=25.53 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=10.7
Q ss_pred HHHHHHhhhhHhhccccccH
Q 032035 112 IGILFSTWFVYRYLLFKPDR 131 (148)
Q Consensus 112 VGigyt~WFvyRyLL~~~~R 131 (148)
||++...+|..|++-+|+..
T Consensus 78 Ig~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHHhccCCC
Confidence 45555677888888887543
No 32
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=37.42 E-value=51 Score=21.02 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=15.4
Q ss_pred hcchhHHHHHHHHHHHHHHH
Q 032035 72 SEDRLGLIGLGFAGIVALWA 91 (148)
Q Consensus 72 ~e~~~~v~~l~~~aival~~ 91 (148)
.+|.-..+++.+.++|++|+
T Consensus 20 irnit~cfal~vv~lvslwi 39 (40)
T PF13124_consen 20 IRNITFCFALLVVVLVSLWI 39 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 44566777888889999996
No 33
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=36.27 E-value=1.6e+02 Score=26.73 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHH--hhccCCchhHHHHHHHHHHhhhhHhhccccccHHHHHH
Q 032035 81 LGFAGIVALWASVNLITA--IDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQ 136 (148)
Q Consensus 81 l~~~aival~~~~~vl~A--Id~iPLlp~llELVGigyt~WFvyRyLL~~~~R~eL~~ 136 (148)
-.+|.+++|-++.-+... .-.+|++..++-.++-...++|.+++=.++ |+|+..
T Consensus 84 ~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~--~de~~~ 139 (356)
T COG4956 84 GTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKK--RDEFLR 139 (356)
T ss_pred HHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhh--hHHHHH
Confidence 334444444444444443 335788999999999999999999876543 455543
No 34
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=35.00 E-value=69 Score=20.43 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=16.0
Q ss_pred HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032035 63 SVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDK 101 (148)
Q Consensus 63 ~lq~~W~~~~e~~~~v~~l~~~aival~~~~~vl~AId~ 101 (148)
.+++.|+++.+--+.+++.++-.+++.|+...+-+.+++
T Consensus 3 ~~~~~~~~ii~~lP~iv~AilIl~vG~~va~~v~~~~~~ 41 (53)
T PF05552_consen 3 PLSGMLDQIIAYLPNIVGAILILIVGWWVAKFVRKLVRR 41 (53)
T ss_dssp ----------GGHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566664333445555555566666666655555443
No 35
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=33.98 E-value=89 Score=25.77 Aligned_cols=70 Identities=24% Similarity=0.296 Sum_probs=52.6
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHh--hccCCchhHHHHHHHHHHhhhhH-------hhccccccHHHHHHHHHHh
Q 032035 72 SEDRLGLIGLGFAGIVALWASVNLITAI--DKLPIIPNALELIGILFSTWFVY-------RYLLFKPDREELFQIINKS 141 (148)
Q Consensus 72 ~e~~~~v~~l~~~aival~~~~~vl~AI--d~iPLlp~llELVGigyt~WFvy-------RyLL~~~~R~eL~~~i~~~ 141 (148)
+|....-+.+++=.+.++|...+.-.++ .+=|.--.++-.-|++++.||.+ -+.+.+=-|+++...++-+
T Consensus 170 y~s~pGy~li~lri~~~~~F~~~~~~t~~~~~~~~k~~Fy~~f~~~~~lWFl~~Pv~~~ia~~v~~~~R~kvv~~~~~~ 248 (257)
T PF10192_consen 170 YDSWPGYILIALRIVLAIWFIYGLYQTISKEKDPEKRKFYLPFGIIFSLWFLSLPVIVIIAHFVDPWVREKVVTGGNLL 248 (257)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5555566666666777889899999988 88888888999999999999985 2345666677776655543
No 36
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=33.59 E-value=80 Score=24.54 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=52.3
Q ss_pred hhhHH-HHHHH--hhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHhhhhHhhccccccH
Q 032035 59 TVFKS-VQNVW--DNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPI-IPNALELIGILFSTWFVYRYLLFKPDR 131 (148)
Q Consensus 59 e~~~~-lq~~W--~~~~e~~~~v~~l~~~aival~~~~~vl~AId~iPL-lp~llELVGigyt~WFvyRyLL~~~~R 131 (148)
.++.+ +.|.| .+ +.|..++++=.+-+.+.+|+....+.. +..+. ...++=-+.++..=||.=|||.+..-+
T Consensus 41 tvvaY~iGDl~ILPr-~gN~~AtiaD~~La~~~iW~~~~~~~~-~~~~~~~~allsA~~i~v~E~fFH~yl~~~~~~ 115 (136)
T PF10710_consen 41 TVVAYLIGDLFILPR-TGNIVATIADFGLAFLVIWLMGYILTG-NYVSIAWAALLSAVLIGVGEYFFHRYLLRNVLR 115 (136)
T ss_pred HHHHHHHHHHheeeC-CCChhHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 56666 55544 23 678888888888889999999999887 45554 444556677888889999999876544
No 37
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=33.09 E-value=57 Score=30.74 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=18.3
Q ss_pred hhhHHHHHHHhhhhc----chhHHHHHHHHHHHH
Q 032035 59 TVFKSVQNVWDNSSE----DRLGLIGLGFAGIVA 88 (148)
Q Consensus 59 e~~~~lq~~W~~~~e----~~~~v~~l~~~aiva 88 (148)
++++.+++.|.+ +. .+..+++.+++++++
T Consensus 7 ~~~~~l~~~w~~-l~~l~~~r~~~l~~~~~~~va 39 (552)
T PRK07193 7 DMLDKLKQKWSP-FQLLRGNRKLILLALLALLVA 39 (552)
T ss_pred HHHHHHHHHHHh-hccccchhhHHHHHHHHHHHH
Confidence 789999999998 53 344444444444444
No 38
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=31.14 E-value=80 Score=26.04 Aligned_cols=26 Identities=12% Similarity=0.331 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHH-hhccCCchhH
Q 032035 83 FAGIVALWASVNLITA-IDKLPIIPNA 108 (148)
Q Consensus 83 ~~aival~~~~~vl~A-Id~iPLlp~l 108 (148)
+..++++.+....+.. +|-+|++..+
T Consensus 192 llmf~G~~~~~~~l~~l~~~~P~lg~l 218 (248)
T PF07787_consen 192 LLMFIGFFLLFSPLYTLVDWIPLLGNL 218 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhhceeech
Confidence 3345567777777766 4889998863
No 39
>PRK09848 glucuronide transporter; Provisional
Probab=30.85 E-value=1.5e+02 Score=25.19 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhHhhccccccHHHHHHHHHHhhh
Q 032035 110 ELIGILFSTWFVYRYLLFKPDREELFQIINKSVS 143 (148)
Q Consensus 110 ELVGigyt~WFvyRyLL~~~~R~eL~~~i~~~k~ 143 (148)
-.+.+.....+.++|=+.+++.+|+.+++++.++
T Consensus 413 p~~~~~~~~~~~~~y~l~~~~~~~~~~~l~~~~~ 446 (448)
T PRK09848 413 PCGFMLLAFVIIWFYPLTDKKFKEIVVEIDNRKK 446 (448)
T ss_pred HHHHHHHHHHHHHHeeCCHHHHHHHHHHHHHhhh
Confidence 3455556667778999999999999999887654
No 40
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=30.53 E-value=98 Score=25.28 Aligned_cols=36 Identities=17% Similarity=0.572 Sum_probs=23.7
Q ss_pred CchhHHHHHHHHHHhhhhHhhcc-----c------cccHHHHHHHHH
Q 032035 104 IIPNALELIGILFSTWFVYRYLL-----F------KPDREELFQIIN 139 (148)
Q Consensus 104 Llp~llELVGigyt~WFvyRyLL-----~------~~~R~eL~~~i~ 139 (148)
++=.++=++-++++.||.|||.- . .|+|.|..+.++
T Consensus 59 l~~a~~gl~~l~~si~~~fry~Rlar~L~~~~~~~~P~k~~~~~~l~ 105 (183)
T PF12263_consen 59 LFLAICGLVALFFSIFWSFRYTRLARRLRSPNPAKRPSKADVVRLLR 105 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 34445567777899999999953 2 455666655543
No 41
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=29.33 E-value=2.2e+02 Score=20.43 Aligned_cols=27 Identities=22% Similarity=0.069 Sum_probs=17.2
Q ss_pred hhhhHhhc-----cccccHHHHHHHHHHhhhh
Q 032035 118 TWFVYRYL-----LFKPDREELFQIINKSVSD 144 (148)
Q Consensus 118 ~WFvyRyL-----L~~~~R~eL~~~i~~~k~~ 144 (148)
.|+..|++ .+.+.++|+.+.++.+|++
T Consensus 90 ~~~~~~~l~~~~~~~~~t~~~l~~d~~~lk~~ 121 (121)
T PF07332_consen 90 LLIGRRRLRRAPPPFEETIAELKEDIAALKER 121 (121)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC
Confidence 34555544 3556678888888777653
No 42
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=28.88 E-value=2.1e+02 Score=21.58 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=31.3
Q ss_pred hhhHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHhhh
Q 032035 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWF 120 (148)
Q Consensus 59 e~~~~lq~~W~~~~e~~~~v~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WF 120 (148)
|++-...-||++-..++...+..+++..++.+..+- |+.++| +|+.|..|=
T Consensus 14 EV~~~~~lK~s~gf~~~~~~il~~v~~~~sf~~Ls~---alk~ip--------vgvAYAiW~ 64 (106)
T COG2076 14 EVVGTTLLKYSDGFTRLWPSILTIVGYGLSFYLLSL---ALKTIP--------LGVAYAIWT 64 (106)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH---HHhhCc--------hHHHHHHHH
Confidence 666666666665344555555566666666665554 666677 466666663
No 43
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=27.29 E-value=74 Score=29.70 Aligned_cols=21 Identities=14% Similarity=0.409 Sum_probs=14.1
Q ss_pred hhhHHHHHHHhhhhcc-hhHHH
Q 032035 59 TVFKSVQNVWDNSSED-RLGLI 79 (148)
Q Consensus 59 e~~~~lq~~W~~~~e~-~~~v~ 79 (148)
+.++++++.|.++... +..++
T Consensus 7 ~~~~~~~~~~~~l~~~qk~~l~ 28 (542)
T PRK06007 7 ELMEKLKEFLQKLSKKRKIALI 28 (542)
T ss_pred HHHHHHHHHHHhcChhhHHHHH
Confidence 6788999999984333 44443
No 44
>PF06686 SpoIIIAC: Stage III sporulation protein AC/AD protein family
Probab=27.25 E-value=63 Score=21.06 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhhHhhccccccHHHHHHHH
Q 032035 108 ALELIGILFSTWFVYRYLLFKPDREELFQII 138 (148)
Q Consensus 108 llELVGigyt~WFvyRyLL~~~~R~eL~~~i 138 (148)
+++.+|+||.+-|..- ++++.+|+|+...+
T Consensus 2 I~ki~gigii~~~l~~-vlk~~~~~e~a~~i 31 (58)
T PF06686_consen 2 ILKIVGIGIIAAFLAL-VLKQAGEPEYASLI 31 (58)
T ss_pred hHHHHHHHHHHHHHHH-HHHHcCChHHHHHH
Confidence 4677777777766532 33333336655443
No 45
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=26.85 E-value=1.2e+02 Score=22.17 Aligned_cols=27 Identities=30% Similarity=0.232 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032035 75 RLGLIGLGFAGIVALWASVNLITAIDK 101 (148)
Q Consensus 75 ~~~v~~l~~~aival~~~~~vl~AId~ 101 (148)
-..+++++++.+++.+.+..+-+-+++
T Consensus 25 ~~~l~~~i~a~~~a~~~~~~~~~~l~~ 51 (146)
T PF02674_consen 25 LFSLIGLIVALFVAFLFYPPLAPFLSN 51 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666665
No 46
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=26.70 E-value=37 Score=22.88 Aligned_cols=17 Identities=35% Similarity=1.028 Sum_probs=13.8
Q ss_pred HHHHhhhhHhhcccccc
Q 032035 114 ILFSTWFVYRYLLFKPD 130 (148)
Q Consensus 114 igyt~WFvyRyLL~~~~ 130 (148)
+.|-.||+|+..+|..+
T Consensus 24 ~~~F~~F~~Kqilfr~~ 40 (54)
T PF06716_consen 24 LVVFIWFVYKQILFRNN 40 (54)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 46788999999998654
No 47
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=26.69 E-value=88 Score=22.18 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=20.5
Q ss_pred HHHHHHhhhhcchh--HHHHHHHHHHHHHHHH
Q 032035 63 SVQNVWDNSSEDRL--GLIGLGFAGIVALWAS 92 (148)
Q Consensus 63 ~lq~~W~~~~e~~~--~v~~l~~~aival~~~ 92 (148)
.+.++||.-.+|-+ ...|+++|++.++++.
T Consensus 17 ~~~~kwD~cl~~~l~k~~~G~~~G~~~s~l~f 48 (75)
T PF04418_consen 17 ELGEKWDRCLSDTLVKTGLGFGIGVVFSLLFF 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 78899999666633 4556667777666554
No 48
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=26.27 E-value=2.4e+02 Score=19.89 Aligned_cols=64 Identities=25% Similarity=0.352 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc-----cCCchhHHHHHHHHHHhhhh-Hhhccc--cccHHHHHHHHHHhhhhh
Q 032035 82 GFAGIVALWASVNLITAIDK-----LPIIPNALELIGILFSTWFV-YRYLLF--KPDREELFQIINKSVSDI 145 (148)
Q Consensus 82 ~~~aival~~~~~vl~AId~-----iPLlp~llELVGigyt~WFv-yRyLL~--~~~R~eL~~~i~~~k~~I 145 (148)
++.++++++-...+-+.++. +|-+-.+-++-.-.+-..-. +++++. .+++++..+++++..+++
T Consensus 20 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (181)
T PF12729_consen 20 LIVGIVGLYSLSQINQNVEEIYENNLPSIELLNDIRSNLQRIRRALRRYLLATDPEERQEIEKEIDEARAEI 91 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433 45444555665555555444 444443 344566666666655443
No 49
>PRK11677 hypothetical protein; Provisional
Probab=25.98 E-value=1.6e+02 Score=22.96 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=14.3
Q ss_pred HhhhhHhhccccc-cHHHHHHHHHHhhhh
Q 032035 117 STWFVYRYLLFKP-DREELFQIINKSVSD 144 (148)
Q Consensus 117 t~WFvyRyLL~~~-~R~eL~~~i~~~k~~ 144 (148)
.|+|+.|++-.+. +.++|-++++..+.+
T Consensus 16 iG~~~~R~~~~~~~~q~~le~eLe~~k~e 44 (134)
T PRK11677 16 IGAVAMRFGNRKLRQQQALQYELEKNKAE 44 (134)
T ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHH
Confidence 4577777655442 234444555544443
No 50
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=23.69 E-value=2.7e+02 Score=22.19 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHhhhhHhhcc
Q 032035 76 LGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLL 126 (148)
Q Consensus 76 ~~v~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WFvyRyLL 126 (148)
+..+|++++..+..|.+..+.+-+|+.| .+|..|.++.+|-..+-++
T Consensus 128 li~~g~~i~i~~m~~~s~~~~~~~~~~p----~l~~~~~~~L~~ig~kl~~ 174 (176)
T TIGR03717 128 LLIFGLLLSIPIIVWGSTLILKLMDRFP----WIIYIGAALLGYVAGEMIV 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhc
Confidence 3455666777888899999999999998 5677888888887665543
No 51
>TIGR00206 fliF flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum).
Probab=22.83 E-value=1.2e+02 Score=28.57 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=10.9
Q ss_pred hhhHHHHHHHhhhh
Q 032035 59 TVFKSVQNVWDNSS 72 (148)
Q Consensus 59 e~~~~lq~~W~~~~ 72 (148)
.+.+++++.|.++.
T Consensus 7 ~~~~~~~~~~~~l~ 20 (555)
T TIGR00206 7 QFKVSAKEFFKKLS 20 (555)
T ss_pred HHHHHHHHHHHhcC
Confidence 56778899999843
No 52
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.17 E-value=1.4e+02 Score=22.51 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=12.6
Q ss_pred hhhhHhhcccc-ccHHHHHHHHHHhhhh
Q 032035 118 TWFVYRYLLFK-PDREELFQIINKSVSD 144 (148)
Q Consensus 118 ~WFvyRyLL~~-~~R~eL~~~i~~~k~~ 144 (148)
|||+.|+.-.+ .+..+|-+.++..+.+
T Consensus 13 G~~~~r~~~~~~~~q~~l~~eL~~~k~e 40 (128)
T PF06295_consen 13 GFLIGRLTSSNQQKQAKLEQELEQAKQE 40 (128)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 45555554433 2224555555555443
No 53
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.60 E-value=73 Score=23.49 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=7.7
Q ss_pred HHHHHHHhhhhH
Q 032035 111 LIGILFSTWFVY 122 (148)
Q Consensus 111 LVGigyt~WFvy 122 (148)
++.++|..||.-
T Consensus 12 l~~l~y~l~~g~ 23 (105)
T PRK00888 12 LVWLQYSLWFGK 23 (105)
T ss_pred HHHHHHHHhccC
Confidence 456777777743
No 54
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=21.55 E-value=1.8e+02 Score=28.38 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=21.4
Q ss_pred HHHhhccCCchhHHHHHHHHHHhhhhHhhc
Q 032035 96 ITAIDKLPIIPNALELIGILFSTWFVYRYL 125 (148)
Q Consensus 96 l~AId~iPLlp~llELVGigyt~WFvyRyL 125 (148)
+.-|-..|.+|=++=-+++++.+|+.+|.-
T Consensus 301 ~~liPG~P~~~fl~la~~~~~~~~~~~~~~ 330 (697)
T PRK06012 301 LGLVPGMPHLPFLLLAGLLGFLAYRLRKRE 330 (697)
T ss_pred HhhcCCChHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666777777776667788999987753
No 55
>PRK02913 hypothetical protein; Provisional
Probab=21.37 E-value=64 Score=26.01 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCchhH-HHHH--HHHHHhhhhHhhcccccc
Q 032035 80 GLGFAGIVALWASVNLITAIDKLPIIPNA-LELI--GILFSTWFVYRYLLFKPD 130 (148)
Q Consensus 80 ~l~~~aival~~~~~vl~AId~iPLlp~l-lELV--Gigyt~WFvyRyLL~~~~ 130 (148)
++++.++++.-++.++-.- .|.+-.. |=.. =..|..|+=+..|+||++
T Consensus 45 a~IFi~LI~Iliy~nv~~~---g~~lTt~LL~~l~ll~iYl~~iR~PkllfK~~ 95 (150)
T PRK02913 45 SLIFVGLIAILIYNNVTNH---GAPLTTYLLSALALLAIYIFFIRSPKLLFKEK 95 (150)
T ss_pred eehHHHHHHHHHHhhhhcc---cchHHHHHHHHHHHHHHHHHHHhchhhheecc
Confidence 3777777777777776553 3333222 2222 236999999999999875
No 56
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=21.30 E-value=1.3e+02 Score=23.99 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhhHhhccc
Q 032035 108 ALELIGILFSTWFVYRYLLF 127 (148)
Q Consensus 108 llELVGigyt~WFvyRyLL~ 127 (148)
++-.-|++|+.||+|..=+.
T Consensus 109 L~gVf~lIWslYf~~~~~l~ 128 (137)
T PLN00092 109 LLGVFGLIWSLYFVYTSTLE 128 (137)
T ss_pred HHhHHHHHHHHHheeecccC
Confidence 34455778888999875444
No 57
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=21.29 E-value=2.7e+02 Score=20.16 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhH
Q 032035 79 IGLGFAGIVALWASVNLITAIDKLPIIPNA 108 (148)
Q Consensus 79 ~~l~~~aival~~~~~vl~AId~iPLlp~l 108 (148)
+|++.--.++-|+...+=+-+++||++..+
T Consensus 11 iG~l~~~~~g~~l~~~~e~ll~riP~v~~i 40 (108)
T PF04367_consen 11 IGLLARNYFGKWLLNWLERLLQRIPLVKSI 40 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 344444445566666666777888885544
No 58
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=21.15 E-value=2.9e+02 Score=20.98 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=17.1
Q ss_pred CCchhH--HHHHHHHHHhhhhHhhcc
Q 032035 103 PIIPNA--LELIGILFSTWFVYRYLL 126 (148)
Q Consensus 103 PLlp~l--lELVGigyt~WFvyRyLL 126 (148)
-.+.++ +|+.+++|..+-.||.--
T Consensus 36 W~Vl~F~glev~~l~~a~~~~~r~~~ 61 (140)
T PF10003_consen 36 WPVLPFAGLEVLALWYAFRRNYRHAR 61 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 344444 499999999988888543
No 59
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=20.89 E-value=1.1e+02 Score=21.94 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=16.7
Q ss_pred hhhHHHHHHHhhhhcchhHHH
Q 032035 59 TVFKSVQNVWDNSSEDRLGLI 79 (148)
Q Consensus 59 e~~~~lq~~W~~~~e~~~~v~ 79 (148)
+..+.+++++|+ |.+..-.+
T Consensus 35 ~ma~~M~~KfdK-Yw~~~~~~ 54 (101)
T PF14372_consen 35 NMAKKMKEKFDK-YWKDCNLL 54 (101)
T ss_pred HHHHHHHHHHHH-HHHHhHHH
Confidence 899999999999 88765554
No 60
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=20.79 E-value=1.2e+02 Score=23.02 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=23.3
Q ss_pred HHHHHHHhhhhHhhccccccHHHHHHHHHHhh
Q 032035 111 LIGILFSTWFVYRYLLFKPDREELFQIINKSV 142 (148)
Q Consensus 111 LVGigyt~WFvyRyLL~~~~R~eL~~~i~~~k 142 (148)
++++++..|+.+|+--+..=|++-+..++.+.
T Consensus 31 l~~~~~~~~~~~r~~~~~~yrr~Al~~L~~l~ 62 (146)
T PF14316_consen 31 LLLLILLLWRLWRRWRRNRYRREALRELAQLE 62 (146)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 55677888888888887666666666666654
No 61
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=20.60 E-value=3.7e+02 Score=20.01 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=27.8
Q ss_pred hhhHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHhhh
Q 032035 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWF 120 (148)
Q Consensus 59 e~~~~lq~~W~~~~e~~~~v~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigyt~WF 120 (148)
|+.-...=++.+-..++...+..+++..++.+..+- |..++|+ |+.|..|-
T Consensus 19 Ev~~t~~Lk~s~gf~~~~~~~~~~~~~~~sf~~Ls~---al~~lpv--------gvAYAvW~ 69 (109)
T PRK10650 19 EIVANIFLKFSDGFRRKIYGILSLAAVLAAFSALSQ---AVKGIDL--------SVAYALWG 69 (109)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH---HHhhCch--------HHHHHHHH
Confidence 555444445554244555555555555556555544 4567774 55555554
Done!