Query 032035
Match_columns 148
No_of_seqs 132 out of 187
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 13:57:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ors_C Potassium channel; volt 28.6 1.5E+02 0.0053 20.8 6.1 47 81-127 10-57 (132)
2 2kyh_A KVAP, voltage-gated pot 26.6 1.9E+02 0.0064 21.1 6.3 68 66-136 13-84 (147)
3 2knc_B Integrin beta-3; transm 26.4 53 0.0018 22.3 3.0 28 112-139 22-49 (79)
4 2k1k_A Ephrin type-A receptor 22.8 1.1E+02 0.0039 18.0 3.6 12 78-89 13-24 (38)
5 2amj_A Modulator of drug activ 18.4 14 0.00048 28.0 -1.5 43 105-147 162-204 (204)
6 2o6n_A RH4B designed peptide; 15.0 64 0.0022 19.0 1.2 22 124-146 13-34 (35)
7 2do5_A Splicing factor 3B subu 15.0 92 0.0031 20.3 2.1 16 129-144 29-44 (58)
8 3eb7_A Insecticidal delta-endo 14.8 3.4E+02 0.012 23.9 6.4 49 90-144 12-61 (589)
9 3rpe_A MDAB, modulator of drug 14.0 41 0.0014 26.3 0.2 42 106-147 176-217 (218)
10 1jg7_A BGT, DNA beta-glucosylt 12.4 94 0.0032 26.3 2.0 18 127-144 299-316 (351)
No 1
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=28.57 E-value=1.5e+02 Score=20.76 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHhhhhHhhccc
Q 032035 81 LGFAGIVALWASVNLITAIDKLPI-IPNALELIGILFSTWFVYRYLLF 127 (148)
Q Consensus 81 l~~~aival~~~~~vl~AId~iPL-lp~llELVGigyt~WFvyRyLL~ 127 (148)
+.+.+++.+-+...++++.+.++- ....++.+-...++||+.-|+++
T Consensus 10 ~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lR 57 (132)
T 1ors_C 10 LGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYR 57 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566666665542 46778889999999999888773
No 2
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=26.63 E-value=1.9e+02 Score=21.11 Aligned_cols=68 Identities=18% Similarity=0.103 Sum_probs=40.6
Q ss_pred HHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHhhhhHhhcc---ccccHHHHHH
Q 032035 66 NVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPI-IPNALELIGILFSTWFVYRYLL---FKPDREELFQ 136 (148)
Q Consensus 66 ~~W~~~~e~~~~v~~l~~~aival~~~~~vl~AId~iPL-lp~llELVGigyt~WFvyRyLL---~~~~R~eL~~ 136 (148)
.-|+- .|+|..-.. ..+++.+.+...++++...++- ..+.++.+-...++||+.-|++ .+++|.+.+.
T Consensus 13 ~~~~~-~e~~~f~~~--i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~~k~~f~~ 84 (147)
T 2kyh_A 13 NIGDV-MEHPLVELG--VSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVK 84 (147)
T ss_dssp HHHHH-HTCHHHHHH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHH-HhCchHHHH--HHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHH
Confidence 34555 777654333 3333334455556666665542 3457888888888899887766 4566655443
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.37 E-value=53 Score=22.29 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=20.1
Q ss_pred HHHHHHhhhhHhhccccccHHHHHHHHH
Q 032035 112 IGILFSTWFVYRYLLFKPDREELFQIIN 139 (148)
Q Consensus 112 VGigyt~WFvyRyLL~~~~R~eL~~~i~ 139 (148)
+.+|-..+++||.++.-.||+|...-=+
T Consensus 22 lliGllllliwk~~~~i~DrrE~~kFEk 49 (79)
T 2knc_B 22 LLIGLAALLIWKLLITIHDRKEFAKFEE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667889999999999988544333
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=22.75 E-value=1.1e+02 Score=18.00 Aligned_cols=12 Identities=8% Similarity=0.299 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 032035 78 LIGLGFAGIVAL 89 (148)
Q Consensus 78 v~~l~~~aival 89 (148)
+.+++++.++++
T Consensus 13 IAGiVvG~v~gv 24 (38)
T 2k1k_A 13 IVAVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeeehHHHHHH
Confidence 344444444443
No 5
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=18.39 E-value=14 Score=27.97 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=35.2
Q ss_pred chhHHHHHHHHHHhhhhHhhccccccHHHHHHHHHHhhhhhcC
Q 032035 105 IPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILG 147 (148)
Q Consensus 105 lp~llELVGigyt~WFvyRyLL~~~~R~eL~~~i~~~k~~I~G 147 (148)
+-.+|+.+|+-+..+|....+-..++|++.+++.++.-++++|
T Consensus 162 l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (204)
T 2amj_A 162 FHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG 204 (204)
T ss_dssp HHHHHHHTTCEECCCEEECSTTTSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCeecceEEEeCCCCcHHHHHHHHHHHHHHHHhhC
Confidence 4578899999999888888777778999999998887776653
No 6
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=15.03 E-value=64 Score=19.02 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=16.7
Q ss_pred hccccccHHHHHHHHHHhhhhhc
Q 032035 124 YLLFKPDREELFQIINKSVSDIL 146 (148)
Q Consensus 124 yLL~~~~R~eL~~~i~~~k~~I~ 146 (148)
||+ +..++|+++.|+..+++|-
T Consensus 13 yli-kkakeeileeikkakqeia 34 (35)
T 2o6n_A 13 YLI-KKAKEEILEEIKKAKQEIA 34 (35)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHHHHHHHHhc
Confidence 444 3457899999999998874
No 7
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=14.98 E-value=92 Score=20.33 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=12.5
Q ss_pred ccHHHHHHHHHHhhhh
Q 032035 129 PDREELFQIINKSVSD 144 (148)
Q Consensus 129 ~~R~eL~~~i~~~k~~ 144 (148)
.+||||+++++....|
T Consensus 29 g~REElvdRLk~Y~~Q 44 (58)
T 2do5_A 29 GNREELVERLQSYTRQ 44 (58)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhc
Confidence 4799999999887543
No 8
>3eb7_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis}
Probab=14.85 E-value=3.4e+02 Score=23.86 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHH-hhhhHhhccccccHHHHHHHHHHhhhh
Q 032035 90 WASVNLITAIDKLPIIPNALELIGILFS-TWFVYRYLLFKPDREELFQIINKSVSD 144 (148)
Q Consensus 90 ~~~~~vl~AId~iPLlp~llELVGigyt-~WFvyRyLL~~~~R~eL~~~i~~~k~~ 144 (148)
-+.+.+++++ .+|.++.++-+.+...- .|- -.++.=+++.+.++++.+|
T Consensus 12 ~i~~~ilg~~-~vP~vg~~~~~~s~l~~~lwp-----~~~~~w~~~~~~ve~lIdq 61 (589)
T 3eb7_A 12 SLVGTILGKL-GVPLVGPIVSLYSTLIDVLWP-----GGKSQWEIFMEQVEALINQ 61 (589)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHHHHHCC-----SSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhc-cCCcHHHHHHHHHHHHhhhCC-----CCccHHHHHHHHHHHHHHH
Confidence 3445556666 48998888765443322 221 0123346777777776654
No 9
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=14.03 E-value=41 Score=26.34 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHhhhhHhhccccccHHHHHHHHHHhhhhhcC
Q 032035 106 PNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILG 147 (148)
Q Consensus 106 p~llELVGigyt~WFvyRyLL~~~~R~eL~~~i~~~k~~I~G 147 (148)
-.+|+.+|+-+.-+|+.-.....++|++.++++++..++++.
T Consensus 176 ~~~l~f~G~~~l~~~~~~g~~~~~~~~~~~~~~~~~L~~~~~ 217 (218)
T 3rpe_A 176 HKANQFLGMKPLPTFMCNDVIKQPDIEGDIARYRQHLAENVN 217 (218)
T ss_dssp HHHHHHTTCEECCCEEECSTTTSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCEEeceEEEeCCCChHHHHHHHHHHHHHHHHhcc
Confidence 678999999999999888888899999999999887777654
No 10
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=12.44 E-value=94 Score=26.33 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=15.0
Q ss_pred ccccHHHHHHHHHHhhhh
Q 032035 127 FKPDREELFQIINKSVSD 144 (148)
Q Consensus 127 ~~~~R~eL~~~i~~~k~~ 144 (148)
.-.+|+||+++|+++|.+
T Consensus 299 yv~nr~elid~in~~k~~ 316 (351)
T 1jg7_A 299 YVNNRAELIDRVNELKHS 316 (351)
T ss_dssp EECSHHHHHHHHHHHHHC
T ss_pred EecCHHHHHHHHhhccch
Confidence 347999999999999853
Done!