BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032036
         (148 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YVA|A Chain A, Crystal Structure Of Escherichia Coli Diaa
 pdb|2YVA|B Chain B, Crystal Structure Of Escherichia Coli Diaa
          Length = 196

 Score = 26.9 bits (58), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 48  SVKHSLITQAKKLGFENPLLACCGHGGKYNYDKNRKCGSKVTVNGKEIMVAKSCKVPAVR 107
           ++  + +T  + L   N +L CCG+G       N +  +   +N  E    +   +PA+ 
Sbjct: 26  AISRAAMTLVQSLLNGNKIL-CCGNGTSA---ANAQHFAASMINRFE---TERPSLPAIA 78

Query: 108 INWDGVHYTEAANKWVYDQI 127
           +N D V  T  AN  ++D++
Sbjct: 79  LNTDNVVLTAIANDRLHDEV 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,554,432
Number of Sequences: 62578
Number of extensions: 171345
Number of successful extensions: 336
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 7
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)