Query 032036
Match_columns 148
No_of_seqs 163 out of 1039
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:43:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03156 GDSL esterase/lipase; 100.0 2.9E-31 6.2E-36 217.0 12.2 114 6-131 233-346 (351)
2 cd01837 SGNH_plant_lipase_like 100.0 9.4E-31 2E-35 210.3 13.1 114 6-131 202-315 (315)
3 cd01847 Triacylglycerol_lipase 99.9 2E-27 4.3E-32 188.2 9.6 103 8-129 177-279 (281)
4 cd01846 fatty_acyltransferase_ 99.9 3E-26 6.5E-31 179.7 11.5 99 12-129 171-269 (270)
5 PRK15381 pathogenicity island 99.9 8.6E-25 1.9E-29 181.4 11.9 101 11-128 298-398 (408)
6 COG3240 Phospholipase/lecithin 99.8 7.7E-20 1.7E-24 148.3 10.2 100 13-131 234-333 (370)
7 PF00657 Lipase_GDSL: GDSL-lik 99.3 3E-12 6.5E-17 96.5 6.1 78 5-127 154-234 (234)
8 cd01823 SEST_like SEST_like. A 97.5 0.0012 2.6E-08 51.2 9.5 38 12-49 120-157 (259)
9 cd01834 SGNH_hydrolase_like_2 97.4 0.00054 1.2E-08 50.1 6.4 66 12-130 126-191 (191)
10 cd01833 XynB_like SGNH_hydrola 97.4 0.00035 7.7E-09 50.0 4.9 25 106-130 132-156 (157)
11 cd01828 sialate_O-acetylestera 97.1 0.0033 7E-08 45.5 7.6 97 18-129 67-166 (169)
12 cd00229 SGNH_hydrolase SGNH_hy 97.0 0.00051 1.1E-08 48.4 2.2 99 18-129 86-186 (187)
13 cd04502 SGNH_hydrolase_like_7 97.0 0.0062 1.3E-07 44.2 8.1 29 18-46 69-97 (171)
14 cd04506 SGNH_hydrolase_YpmR_li 96.8 0.0089 1.9E-07 44.5 8.1 31 17-47 100-130 (204)
15 cd01844 SGNH_hydrolase_like_6 96.8 0.0097 2.1E-07 43.6 8.1 27 20-46 75-101 (177)
16 cd01831 Endoglucanase_E_like E 96.7 0.019 4.1E-07 41.7 8.9 29 18-46 76-104 (169)
17 cd01825 SGNH_hydrolase_peri1 S 96.5 0.0086 1.9E-07 43.8 6.3 32 18-49 76-107 (189)
18 cd01827 sialate_O-acetylestera 96.5 0.031 6.7E-07 40.9 9.1 30 18-47 88-117 (188)
19 cd01832 SGNH_hydrolase_like_1 96.5 0.02 4.3E-07 41.8 7.8 24 106-129 161-184 (185)
20 cd01820 PAF_acetylesterase_lik 96.4 0.017 3.7E-07 43.7 7.1 30 18-47 108-137 (214)
21 cd01830 XynE_like SGNH_hydrola 95.9 0.0039 8.4E-08 46.8 1.6 24 105-128 178-201 (204)
22 cd01840 SGNH_hydrolase_yrhL_li 95.7 0.0065 1.4E-07 43.6 2.0 25 105-129 124-148 (150)
23 cd01841 NnaC_like NnaC (CMP-Ne 95.7 0.0084 1.8E-07 43.5 2.4 23 107-129 150-172 (174)
24 PRK10528 multifunctional acyl- 95.6 0.0072 1.6E-07 45.2 2.0 26 105-130 157-182 (191)
25 cd01839 SGNH_arylesterase_like 95.4 0.0093 2E-07 44.7 2.0 22 108-129 182-203 (208)
26 cd01822 Lysophospholipase_L1_l 95.2 0.012 2.7E-07 42.4 2.0 24 106-129 151-174 (177)
27 cd01838 Isoamyl_acetate_hydrol 95.2 0.012 2.6E-07 43.2 1.8 31 18-48 87-117 (199)
28 cd01824 Phospholipase_B_like P 95.1 0.013 2.9E-07 47.0 2.1 34 17-50 143-176 (288)
29 cd01829 SGNH_hydrolase_peri2 S 95.1 0.013 2.9E-07 43.3 2.0 24 106-129 173-196 (200)
30 cd04501 SGNH_hydrolase_like_4 95.1 0.016 3.6E-07 42.3 2.5 25 105-129 157-181 (183)
31 cd01835 SGNH_hydrolase_like_3 95.1 0.014 3E-07 43.1 1.9 23 107-129 169-191 (193)
32 cd01821 Rhamnogalacturan_acety 95.0 0.017 3.7E-07 42.9 2.2 23 107-129 174-196 (198)
33 cd01836 FeeA_FeeB_like SGNH_hy 94.9 0.017 3.7E-07 42.5 2.1 29 18-46 86-114 (191)
34 cd01826 acyloxyacyl_hydrolase_ 93.5 0.5 1.1E-05 38.4 7.8 20 110-129 285-304 (305)
35 PF13472 Lipase_GDSL_2: GDSL-l 92.8 0.05 1.1E-06 38.4 1.1 19 105-123 161-179 (179)
36 COG2755 TesA Lysophospholipase 91.2 0.16 3.4E-06 38.1 2.3 25 106-130 183-207 (216)
37 PF14606 Lipase_GDSL_3: GDSL-l 90.8 0.5 1.1E-05 35.5 4.6 30 19-48 74-103 (178)
38 KOG3035 Isoamyl acetate-hydrol 79.0 0.67 1.5E-05 36.1 0.2 103 19-129 96-206 (245)
39 cd01842 SGNH_hydrolase_like_5 78.9 1.6 3.5E-05 32.9 2.2 25 105-129 156-180 (183)
40 PRK13717 conjugal transfer pro 62.3 18 0.0004 25.7 4.3 25 12-36 71-95 (128)
41 COG4531 ZnuA ABC-type Zn2+ tra 58.1 36 0.00078 27.6 5.8 48 12-65 180-231 (318)
42 TIGR02744 TrbI_Ftype type-F co 49.9 40 0.00086 23.4 4.3 25 12-36 58-82 (112)
43 KOG3670 Phospholipase [Lipid t 43.9 17 0.00036 30.7 2.0 38 17-56 210-247 (397)
44 PF04914 DltD_C: DltD C-termin 42.3 20 0.00044 25.4 2.0 24 105-128 101-124 (130)
45 PF12905 Glyco_hydro_101: Endo 41.2 36 0.00077 29.0 3.5 27 22-48 157-183 (425)
46 PF06812 ImpA-rel_N: ImpA-rela 37.1 12 0.00027 22.7 0.2 9 108-116 52-60 (62)
47 PF09677 TrbI_Ftype: Type-F co 34.6 95 0.0021 21.4 4.3 25 12-36 57-81 (111)
48 COG1182 AcpD Acyl carrier prot 34.2 66 0.0014 24.7 3.8 27 22-48 19-45 (202)
49 PTZ00195 60S ribosomal protein 32.6 40 0.00086 25.8 2.3 30 117-146 42-71 (198)
50 COG2845 Uncharacterized protei 31.0 34 0.00075 28.3 1.8 24 106-129 292-315 (354)
51 PF12872 OST-HTH: OST-HTH/LOTU 29.6 62 0.0014 19.7 2.6 42 25-66 6-51 (74)
52 KOG0907 Thioredoxin [Posttrans 29.4 98 0.0021 20.9 3.7 25 24-48 38-62 (106)
53 cd02957 Phd_like Phosducin (Ph 27.6 1.6E+02 0.0034 19.5 4.5 37 23-64 40-76 (113)
54 PTZ00469 60S ribosomal subunit 27.1 58 0.0013 24.7 2.4 30 117-146 42-71 (187)
55 cd02989 Phd_like_TxnDC9 Phosdu 26.6 1.2E+02 0.0025 20.4 3.7 38 23-64 38-75 (113)
56 PRK13555 azoreductase; Provisi 25.1 1.3E+02 0.0027 22.9 4.0 29 21-49 18-47 (208)
57 PF11965 DUF3479: Domain of un 24.3 1.3E+02 0.0028 22.3 3.8 31 19-49 10-41 (164)
58 PF04690 YABBY: YABBY protein; 23.7 81 0.0018 23.5 2.6 24 16-39 124-147 (170)
59 TIGR02089 TTC tartrate dehydro 22.9 1.3E+02 0.0029 25.0 4.0 37 25-61 200-236 (352)
60 cd08445 PBP2_BenM_CatM_CatR Th 21.6 1.5E+02 0.0032 20.6 3.7 41 22-62 13-55 (203)
61 PF07315 DUF1462: Protein of u 21.6 83 0.0018 21.1 2.0 34 104-137 37-71 (93)
62 PF02384 N6_Mtase: N-6 DNA Met 21.4 48 0.001 26.2 1.1 53 17-73 6-58 (311)
63 PF03421 YopJ: YopJ Serine/Thr 21.2 1.8E+02 0.0039 21.6 4.1 33 24-56 32-64 (177)
64 PF00180 Iso_dh: Isocitrate/is 20.8 1.9E+02 0.004 23.9 4.4 38 24-61 195-233 (348)
65 PRK04005 50S ribosomal protein 20.4 71 0.0015 22.1 1.6 29 117-145 18-46 (111)
66 cd08448 PBP2_LTTR_aromatics_li 20.3 1.7E+02 0.0037 19.9 3.7 41 22-62 12-54 (197)
67 PRK03437 3-isopropylmalate deh 20.2 1.3E+02 0.0029 24.9 3.4 37 25-61 197-233 (344)
68 smart00340 HALZ homeobox assoc 20.1 1.1E+02 0.0024 17.5 2.1 16 20-35 19-34 (44)
No 1
>PLN03156 GDSL esterase/lipase; Provisional
Probab=99.97 E-value=2.9e-31 Score=216.97 Aligned_cols=114 Identities=25% Similarity=0.527 Sum_probs=103.8
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeccHHHHHHHHhhhhcCCCCCcccccCCCccccccCccCCC
Q 032036 6 DDHGCATPFNDVARFFNSRLKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQAKKLGFENPLLACCGHGGKYNYDKNRKCG 85 (148)
Q Consensus 6 d~~~C~~~~n~~~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~P~~yGf~n~~~~Cc~~gg~~~~~~~~~C~ 85 (148)
+..+|.+.+|.++..||++|++++++|++++|+++|+++|+|+++.++++||++|||++++.+|||.| .|+ ....|+
T Consensus 233 ~~~~C~~~~n~~~~~~N~~L~~~l~~L~~~~pg~~i~~~D~y~~~~~ii~nP~~yGf~~~~~aCCg~g-~~~--~~~~C~ 309 (351)
T PLN03156 233 GGSECVEEYNDVALEFNGKLEKLVTKLNKELPGIKLVFSNPYDIFMQIIRNPSAYGFEVTSVACCATG-MFE--MGYLCN 309 (351)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEehHHHHHHHHhCccccCcccCCccccCCC-CCC--CccccC
Confidence 56789999999999999999999999999999999999999999999999999999999999999965 665 467898
Q ss_pred CccccCCcccccccccCCCCcceeecCCChhHHHHHHHHHHHHhCC
Q 032036 86 SKVTVNGKEIMVAKSCKVPAVRINWDGVHYTEAANKWVYDQIINGS 131 (148)
Q Consensus 86 ~~~~~~g~~~~~~~~C~~p~~y~fwD~~HPT~~~h~~iA~~~~~~~ 131 (148)
+. ... .|++|++|+|||++|||+++|++||+.++++.
T Consensus 310 ~~--------~~~-~C~~p~~yvfWD~~HPTe~a~~~iA~~~~~~l 346 (351)
T PLN03156 310 RN--------NPF-TCSDADKYVFWDSFHPTEKTNQIIANHVVKTL 346 (351)
T ss_pred CC--------CCC-ccCCccceEEecCCCchHHHHHHHHHHHHHHH
Confidence 63 024 89999999999999999999999999998763
No 2
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.97 E-value=9.4e-31 Score=210.32 Aligned_cols=114 Identities=40% Similarity=0.748 Sum_probs=102.8
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeccHHHHHHHHhhhhcCCCCCcccccCCCccccccCccCCC
Q 032036 6 DDHGCATPFNDVARFFNSRLKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQAKKLGFENPLLACCGHGGKYNYDKNRKCG 85 (148)
Q Consensus 6 d~~~C~~~~n~~~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~P~~yGf~n~~~~Cc~~gg~~~~~~~~~C~ 85 (148)
+..+|.+.+|.++..||.+|+++|++|++++|+++|+++|+|+++.++++||++|||++++++||+.| .++ ....|.
T Consensus 202 ~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~y~~~~~i~~np~~yGf~~~~~aCc~~g-~~~--~~~~c~ 278 (315)
T cd01837 202 DGGGCLEELNELARLFNAKLKKLLAELRRELPGAKFVYADIYNALLDLIQNPAKYGFENTLKACCGTG-GPE--GGLLCN 278 (315)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEehhHHHHHHHhChhhcCCcCCCcCccCCC-CCC--cccccC
Confidence 56799999999999999999999999999999999999999999999999999999999999999976 433 246776
Q ss_pred CccccCCcccccccccCCCCcceeecCCChhHHHHHHHHHHHHhCC
Q 032036 86 SKVTVNGKEIMVAKSCKVPAVRINWDGVHYTEAANKWVYDQIINGS 131 (148)
Q Consensus 86 ~~~~~~g~~~~~~~~C~~p~~y~fwD~~HPT~~~h~~iA~~~~~~~ 131 (148)
.. ... +|.+|++|+|||++|||+++|++||+.+++|.
T Consensus 279 ~~--------~~~-~C~~p~~y~fwD~~HpT~~~~~~ia~~~~~g~ 315 (315)
T cd01837 279 PC--------GST-VCPDPSKYVFWDGVHPTEAANRIIADALLSGP 315 (315)
T ss_pred CC--------CCC-cCCCccceEEeCCCChHHHHHHHHHHHHhcCC
Confidence 52 134 89999999999999999999999999999874
No 3
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=99.94 E-value=2e-27 Score=188.24 Aligned_cols=103 Identities=18% Similarity=0.314 Sum_probs=90.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeccHHHHHHHHhhhhcCCCCCcccccCCCccccccCccCCCCc
Q 032036 8 HGCATPFNDVARFFNSRLKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQAKKLGFENPLLACCGHGGKYNYDKNRKCGSK 87 (148)
Q Consensus 8 ~~C~~~~n~~~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~P~~yGf~n~~~~Cc~~gg~~~~~~~~~C~~~ 87 (148)
..|.+.+|.++..||.+|+++|++|+.+ +|+++|+|+++.++++||++|||++++++||+.++.+ .|+..
T Consensus 177 ~~~~~~~n~~~~~~N~~L~~~l~~l~~~----~i~~~D~~~~~~~i~~nP~~yGf~~~~~~CC~~~~~~------~~~~~ 246 (281)
T cd01847 177 AAAAALASALSQTYNQTLQSGLNQLGAN----NIIYVDTATLLKEVVANPAAYGFTNTTTPACTSTSAA------GSGAA 246 (281)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhccCC----eEEEEEHHHHHHHHHhChHhcCccCCCccccCCCCcc------ccccc
Confidence 4688999999999999999999998754 8999999999999999999999999999999965332 24321
Q ss_pred cccCCcccccccccCCCCcceeecCCChhHHHHHHHHHHHHh
Q 032036 88 VTVNGKEIMVAKSCKVPAVRINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 88 ~~~~g~~~~~~~~C~~p~~y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
... .|.+|++|+|||++||||++|++||+.+++
T Consensus 247 --------~~~-~c~~~~~y~fwD~~HpTe~~~~~ia~~~~~ 279 (281)
T cd01847 247 --------TLV-TAAAQSTYLFADDVHPTPAGHKLIAQYALS 279 (281)
T ss_pred --------ccc-CCCCccceeeccCCCCCHHHHHHHHHHHHH
Confidence 024 899999999999999999999999999875
No 4
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=99.94 E-value=3e-26 Score=179.72 Aligned_cols=99 Identities=18% Similarity=0.324 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeccHHHHHHHHhhhhcCCCCCcccccCCCccccccCccCCCCccccC
Q 032036 12 TPFNDVARFFNSRLKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQAKKLGFENPLLACCGHGGKYNYDKNRKCGSKVTVN 91 (148)
Q Consensus 12 ~~~n~~~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~P~~yGf~n~~~~Cc~~gg~~~~~~~~~C~~~~~~~ 91 (148)
+.+|.+++.||++|++++++|++++|+++|+++|+|+++.+++++|+.|||+++..+||+.+ . |.+.
T Consensus 171 ~~~~~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~~~~~p~~yGf~~~~~~C~~~~-------~--~~~~---- 237 (270)
T cd01846 171 ARATALTAAYNAKLAEKLAELKAQHPGVNILLFDTNALFNDILDNPAAYGFTNVTDPCLDYV-------Y--SYSP---- 237 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHhCHHhcCCCcCcchhcCCC-------c--cccc----
Confidence 58999999999999999999999999999999999999999999999999999999999843 1 5432
Q ss_pred CcccccccccCCCCcceeecCCChhHHHHHHHHHHHHh
Q 032036 92 GKEIMVAKSCKVPAVRINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 92 g~~~~~~~~C~~p~~y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
.. .|.+|++|+|||++|||+++|++||+.+++
T Consensus 238 -----~~-~c~~~~~y~fwD~~HpT~~~~~~iA~~~~~ 269 (270)
T cd01846 238 -----RE-ACANPDKYLFWDEVHPTTAVHQLIAEEVAA 269 (270)
T ss_pred -----cC-CCCCccceEEecCCCccHHHHHHHHHHHHh
Confidence 34 899999999999999999999999999875
No 5
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=99.92 E-value=8.6e-25 Score=181.36 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeccHHHHHHHHhhhhcCCCCCcccccCCCccccccCccCCCCcccc
Q 032036 11 ATPFNDVARFFNSRLKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQAKKLGFENPLLACCGHGGKYNYDKNRKCGSKVTV 90 (148)
Q Consensus 11 ~~~~n~~~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~P~~yGf~n~~~~Cc~~gg~~~~~~~~~C~~~~~~ 90 (148)
.+.+|.++..||++|+++|++|++++|+++|+++|+|+++.+++++|++|||++++. ||+.| ..+ ....|.+.
T Consensus 298 ~~~~N~~a~~fN~~L~~~L~~L~~~~pg~~ivy~D~y~~~~~ii~nP~~yGF~~~~~-cCg~G-~~~--~~~~C~p~--- 370 (408)
T PRK15381 298 KRKLKDESIAHNALLKTNVEELKEKYPQHKICYYETADAFKVIMEAASNIGYDTENP-YTHHG-YVH--VPGAKDPQ--- 370 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEhHHHHHHHHhCHHhcCCCcccc-ccCCC-ccC--CccccCcc---
Confidence 578999999999999999999999999999999999999999999999999999876 99875 443 24567763
Q ss_pred CCcccccccccCCCCcceeecCCChhHHHHHHHHHHHH
Q 032036 91 NGKEIMVAKSCKVPAVRINWDGVHYTEAANKWVYDQII 128 (148)
Q Consensus 91 ~g~~~~~~~~C~~p~~y~fwD~~HPT~~~h~~iA~~~~ 128 (148)
.. +|+ +|+|||.+|||+++|+++|+.+-
T Consensus 371 ------~~-~C~---~YvFWD~vHPTe~ah~iiA~~~~ 398 (408)
T PRK15381 371 ------LD-ICP---QYVFNDLVHPTQEVHHCFAIMLE 398 (408)
T ss_pred ------cC-CCC---ceEecCCCCChHHHHHHHHHHHH
Confidence 34 785 99999999999999999999875
No 6
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=99.82 E-value=7.7e-20 Score=148.31 Aligned_cols=100 Identities=21% Similarity=0.373 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeccHHHHHHHHhhhhcCCCCCcccccCCCccccccCccCCCCccccCC
Q 032036 13 PFNDVARFFNSRLKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQAKKLGFENPLLACCGHGGKYNYDKNRKCGSKVTVNG 92 (148)
Q Consensus 13 ~~n~~~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~P~~yGf~n~~~~Cc~~gg~~~~~~~~~C~~~~~~~g 92 (148)
.+.+++..||..|.+.|++++ .+|+.+|++.+|++++.+|++|||+|++..||... .. ...|.+.
T Consensus 234 ~a~~~t~~~Na~L~~~L~~~g-----~nIi~iD~~~llk~im~nPa~fGlant~~~~c~~~-~~----~~~~~a~----- 298 (370)
T COG3240 234 QASQATIAFNASLTSQLEQLG-----GNIIRIDTYTLLKEIMTNPAEFGLANTTAPACDAT-VS----NPACSAS----- 298 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CcEEEeEhHHHHHHHHhCHHhcCcccCCCcccCcc-cC----Ccccccc-----
Confidence 788999999999999999885 79999999999999999999999999999999853 22 2256553
Q ss_pred cccccccccCCCCcceeecCCChhHHHHHHHHHHHHhCC
Q 032036 93 KEIMVAKSCKVPAVRINWDGVHYTEAANKWVYDQIINGS 131 (148)
Q Consensus 93 ~~~~~~~~C~~p~~y~fwD~~HPT~~~h~~iA~~~~~~~ 131 (148)
+.. .|..|++|+|||++|||+++|++||++++.-.
T Consensus 299 ---~p~-~~~~~~~ylFaD~vHPTt~~H~liAeyila~l 333 (370)
T COG3240 299 ---LPA-LCAAPQKYLFADSVHPTTAVHHLIAEYILARL 333 (370)
T ss_pred ---ccc-ccCCccceeeecccCCchHHHHHHHHHHHHHH
Confidence 112 45677789999999999999999999998643
No 7
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=99.32 E-value=3e-12 Score=96.46 Aligned_cols=78 Identities=36% Similarity=0.598 Sum_probs=67.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEEeccHHHHHH--HHhhhhcCCCCCcccccCCCccccccCc
Q 032036 5 IDDHGCATPFNDVARFFNSRLKAAVVQLRKDLP-LAAMTYVDIFSVKHSL--ITQAKKLGFENPLLACCGHGGKYNYDKN 81 (148)
Q Consensus 5 ~d~~~C~~~~n~~~~~fN~~L~~~l~~l~~~~~-~~~i~~~D~~~~~~~v--i~~P~~yGf~n~~~~Cc~~gg~~~~~~~ 81 (148)
.+..+|.+.++..+..||.+|++++.+|++.++ +.++.++|+++.+.+. +.+|..
T Consensus 154 ~~~~~~~~~~~~~~~~~n~~l~~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~~---------------------- 211 (234)
T PF00657_consen 154 KDSASCIERLNAIVAAFNSALREVAAQLRKDYPKGANVPYFDIYSIFSDMYGIQNPEN---------------------- 211 (234)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTEEEEEHHHHHHHHHHHHHGGH----------------------
T ss_pred ccccccchhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHHHhhhccCccc----------------------
Confidence 356789999999999999999999999987766 7899999999999997 555544
Q ss_pred cCCCCccccCCcccccccccCCCCcceeecCCChhHHHHHHHHHHH
Q 032036 82 RKCGSKVTVNGKEIMVAKSCKVPAVRINWDGVHYTEAANKWVYDQI 127 (148)
Q Consensus 82 ~~C~~~~~~~g~~~~~~~~C~~p~~y~fwD~~HPT~~~h~~iA~~~ 127 (148)
++|+|||++|||+++|++||+.|
T Consensus 212 -----------------------~~~~~~D~~Hpt~~g~~~iA~~i 234 (234)
T PF00657_consen 212 -----------------------DKYMFWDGVHPTEKGHKIIAEYI 234 (234)
T ss_dssp -----------------------HHCBBSSSSSB-HHHHHHHHHHH
T ss_pred -----------------------ceeccCCCcCCCHHHHHHHHcCC
Confidence 24799999999999999999975
No 8
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=97.48 E-value=0.0012 Score=51.16 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeccHH
Q 032036 12 TPFNDVARFFNSRLKAAVVQLRKDLPLAAMTYVDIFSV 49 (148)
Q Consensus 12 ~~~n~~~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~ 49 (148)
.........|-+.|..+|+++++..|+++|+++-...+
T Consensus 120 ~~~~~~~~~~~~~l~~~l~~i~~~~p~a~I~~~gyp~~ 157 (259)
T cd01823 120 GARDAALDEVGARLKAVLDRIRERAPNARVVVVGYPRL 157 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEeccccc
Confidence 33445567888999999999999899999888875444
No 9
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.41 E-value=0.00054 Score=50.08 Aligned_cols=66 Identities=17% Similarity=0.305 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeccHHHHHHHHhhhhcCCCCCcccccCCCccccccCccCCCCccccC
Q 032036 12 TPFNDVARFFNSRLKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQAKKLGFENPLLACCGHGGKYNYDKNRKCGSKVTVN 91 (148)
Q Consensus 12 ~~~n~~~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~P~~yGf~n~~~~Cc~~gg~~~~~~~~~C~~~~~~~ 91 (148)
...+.....||+.|++..++. .+.++|+++.+.+....+
T Consensus 126 ~~~~~~~~~~n~~l~~~a~~~-------~~~~iD~~~~~~~~~~~~---------------------------------- 164 (191)
T cd01834 126 AEYNANLAAYADAVRELAAEN-------GVAFVDLFTPMKEAFQKA---------------------------------- 164 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-------CCeEEecHHHHHHHHHhC----------------------------------
Confidence 456677777888777654432 488999999887643221
Q ss_pred CcccccccccCCCCcceeecCCChhHHHHHHHHHHHHhC
Q 032036 92 GKEIMVAKSCKVPAVRINWDGVHYTEAANKWVYDQIING 130 (148)
Q Consensus 92 g~~~~~~~~C~~p~~y~fwD~~HPT~~~h~~iA~~~~~~ 130 (148)
+..++++|++||++++|++||+.+.++
T Consensus 165 ------------~~~~~~~D~~Hpn~~G~~~~a~~~~~~ 191 (191)
T cd01834 165 ------------GEAVLTVDGVHPNEAGHRALARLWLEA 191 (191)
T ss_pred ------------CCccccCCCCCCCHHHHHHHHHHHHhC
Confidence 012356899999999999999998764
No 10
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.37 E-value=0.00035 Score=49.99 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.6
Q ss_pred cceeecCCChhHHHHHHHHHHHHhC
Q 032036 106 VRINWDGVHYTEAANKWVYDQIING 130 (148)
Q Consensus 106 ~y~fwD~~HPT~~~h~~iA~~~~~~ 130 (148)
+++.+|++||++++|+.||+.++++
T Consensus 132 ~~~~~Dg~Hpn~~Gy~~~a~~~~~~ 156 (157)
T cd01833 132 ADDLYDGLHPNDQGYKKMADAWYEA 156 (157)
T ss_pred cccccCCCCCchHHHHHHHHHHHhh
Confidence 5688999999999999999998864
No 11
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.10 E-value=0.0033 Score=45.55 Aligned_cols=97 Identities=11% Similarity=0.080 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEEeccHHHHHHHH-hhhhcCCCCCcccccC-CCccc-cccCccCCCCccccCCcc
Q 032036 18 ARFFNSRLKAAVVQLRKDLPLAAMTYVDIFSVKHSLIT-QAKKLGFENPLLACCG-HGGKY-NYDKNRKCGSKVTVNGKE 94 (148)
Q Consensus 18 ~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~-~P~~yGf~n~~~~Cc~-~gg~~-~~~~~~~C~~~~~~~g~~ 94 (148)
...|-+.|.++++.++++.|+.+++++.........-. +...--+.+.....|. .+-.+ .. ...+...
T Consensus 67 ~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~-~~~~~~~-------- 137 (169)
T cd01828 67 DEDIVANYRTILEKLRKHFPNIKIVVQSILPVGELKSIPNEQIEELNRQLAQLAQQEGVTFLDL-WAVFTNA-------- 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCccCcCCHHHHHHHHHHHHHHHHHCCCEEEec-hhhhcCC--------
Confidence 46777889999999999899999999876543200000 0000001111111111 00000 00 0000000
Q ss_pred cccccccCCCCcceeecCCChhHHHHHHHHHHHHh
Q 032036 95 IMVAKSCKVPAVRINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 95 ~~~~~~C~~p~~y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
. .+..+++.+|++||+++||+++|+.+..
T Consensus 138 ---~---~~~~~~~~~DgiHpn~~G~~~~a~~i~~ 166 (169)
T cd01828 138 ---D---GDLKNEFTTDGLHLNAKGYAVWAAALQP 166 (169)
T ss_pred ---C---CCcchhhccCccccCHHHHHHHHHHHHH
Confidence 0 0134678899999999999999999875
No 12
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=96.96 E-value=0.00051 Score=48.35 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEEeccHHHHHHHHhhhh-cCCCCCcccccCCCccccccCccCCCCccccCCcccc
Q 032036 18 ARFFNSRLKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQAKK-LGFENPLLACCGHGGKYNYDKNRKCGSKVTVNGKEIM 96 (148)
Q Consensus 18 ~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~P~~-yGf~n~~~~Cc~~gg~~~~~~~~~C~~~~~~~g~~~~ 96 (148)
...+...+.+.++.+++..|+.+++++............+.. -.+.......|.. ++..........
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~--------- 153 (187)
T cd00229 86 IDEFKANLEELLDALRERAPGAKVILITPPPPPPREGLLGRALPRYNEAIKAVAAE---NPAPSGVDLVDL--------- 153 (187)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCCCCCchhhHHHHHHHHHHHHHHHHH---cCCCcceEEEEh---------
Confidence 467788889999999888899999999887654321000000 0011111111110 000000000000
Q ss_pred cccccC-CCCcceeecCCChhHHHHHHHHHHHHh
Q 032036 97 VAKSCK-VPAVRINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 97 ~~~~C~-~p~~y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
.. ... .+..+++||++|||+++|+++|+.+++
T Consensus 154 ~~-~~~~~~~~~~~~Dg~H~~~~G~~~~a~~i~~ 186 (187)
T cd00229 154 AA-LLGDEDKSLYSPDGIHPNPAGHKLIAEALAS 186 (187)
T ss_pred hh-hhCCCccccccCCCCCCchhhHHHHHHHHhc
Confidence 01 111 146789999999999999999999874
No 13
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=96.96 E-value=0.0062 Score=44.20 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEEec
Q 032036 18 ARFFNSRLKAAVVQLRKDLPLAAMTYVDI 46 (148)
Q Consensus 18 ~~~fN~~L~~~l~~l~~~~~~~~i~~~D~ 46 (148)
.+.|-..++++++.+++..|+.++++...
T Consensus 69 ~~~~~~~~~~lv~~i~~~~~~~~iil~~~ 97 (171)
T cd04502 69 PEEVLRDFRELVNRIRAKLPDTPIAIISI 97 (171)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCcEEEEEe
Confidence 56688889999999999999998888764
No 14
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=96.82 E-value=0.0089 Score=44.55 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEEEecc
Q 032036 17 VARFFNSRLKAAVVQLRKDLPLAAMTYVDIF 47 (148)
Q Consensus 17 ~~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~ 47 (148)
..+.|=+.|.++|+.++++.|+.+|+++..+
T Consensus 100 ~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~~~ 130 (204)
T cd04506 100 AEETYQNNLKKIFKEIRKLNPDAPIFLVGLY 130 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 3467878999999999999999998888654
No 15
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.80 E-value=0.0097 Score=43.59 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEec
Q 032036 20 FFNSRLKAAVVQLRKDLPLAAMTYVDI 46 (148)
Q Consensus 20 ~fN~~L~~~l~~l~~~~~~~~i~~~D~ 46 (148)
.|-+.|.+++++++++.|++.|++...
T Consensus 75 ~~~~~~~~~i~~i~~~~p~~~iil~~~ 101 (177)
T cd01844 75 MVRERLGPLVKGLRETHPDTPILLVSP 101 (177)
T ss_pred HHHHHHHHHHHHHHHHCcCCCEEEEec
Confidence 678899999999999999998888764
No 16
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=96.69 E-value=0.019 Score=41.69 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEEec
Q 032036 18 ARFFNSRLKAAVVQLRKDLPLAAMTYVDI 46 (148)
Q Consensus 18 ~~~fN~~L~~~l~~l~~~~~~~~i~~~D~ 46 (148)
...|=..+.++++++++++|...|++.-.
T Consensus 76 ~~~~~~~~~~li~~i~~~~p~~~i~~~~~ 104 (169)
T cd01831 76 GEDFTNAYVEFIEELRKRYPDAPIVLMLG 104 (169)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 44566678889999999999998877653
No 17
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.55 E-value=0.0086 Score=43.76 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEEeccHH
Q 032036 18 ARFFNSRLKAAVVQLRKDLPLAAMTYVDIFSV 49 (148)
Q Consensus 18 ~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~ 49 (148)
.+.|=..|+.+++++++..|+.+|+++.....
T Consensus 76 ~~~~~~~~~~li~~i~~~~~~~~iv~~~~~~~ 107 (189)
T cd01825 76 ASEYRQQLREFIKRLRQILPNASILLVGPPDS 107 (189)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEcCCch
Confidence 45666888899999998889999999887543
No 18
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.51 E-value=0.031 Score=40.93 Aligned_cols=30 Identities=3% Similarity=-0.060 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEEecc
Q 032036 18 ARFFNSRLKAAVVQLRKDLPLAAMTYVDIF 47 (148)
Q Consensus 18 ~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~ 47 (148)
...|-..|.++++.+++..|+.+++++-..
T Consensus 88 ~~~~~~~l~~li~~i~~~~~~~~iil~t~~ 117 (188)
T cd01827 88 KDDFKKDYETMIDSFQALPSKPKIYICYPI 117 (188)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 356777899999999988899888887654
No 19
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=96.48 E-value=0.02 Score=41.79 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=20.6
Q ss_pred cceeecCCChhHHHHHHHHHHHHh
Q 032036 106 VRINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 106 ~y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
.++.=|++||++++|++||+.+++
T Consensus 161 ~~~~~DgiHpn~~G~~~~A~~i~~ 184 (185)
T cd01832 161 RLWASDRLHPSAAGHARLAALVLA 184 (185)
T ss_pred cccccCCCCCChhHHHHHHHHHhh
Confidence 345569999999999999999875
No 20
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=96.37 E-value=0.017 Score=43.69 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEEecc
Q 032036 18 ARFFNSRLKAAVVQLRKDLPLAAMTYVDIF 47 (148)
Q Consensus 18 ~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~ 47 (148)
...+=..|.++++++++++|+.+|+++-+.
T Consensus 108 ~~~~~~~l~~ii~~l~~~~P~~~Iil~~~~ 137 (214)
T cd01820 108 AEEIAEGILAIVEEIREKLPNAKILLLGLL 137 (214)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 344557788999999999999999888754
No 21
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=95.93 E-value=0.0039 Score=46.83 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=20.8
Q ss_pred CcceeecCCChhHHHHHHHHHHHH
Q 032036 105 AVRINWDGVHYTEAANKWVYDQII 128 (148)
Q Consensus 105 ~~y~fwD~~HPT~~~h~~iA~~~~ 128 (148)
..|+.+|++||+++||++||+.+.
T Consensus 178 ~~~~~~DGvHpn~~Gy~~~A~~i~ 201 (204)
T cd01830 178 PAYDSGDHLHPNDAGYQAMADAVD 201 (204)
T ss_pred cccCCCCCCCCCHHHHHHHHHhcC
Confidence 357778999999999999999863
No 22
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=95.71 E-value=0.0065 Score=43.58 Aligned_cols=25 Identities=28% Similarity=0.174 Sum_probs=21.7
Q ss_pred CcceeecCCChhHHHHHHHHHHHHh
Q 032036 105 AVRINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 105 ~~y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
.+++..|++||+++||+++|+.+.+
T Consensus 124 ~~~~~~DgiHpn~~G~~~~a~~i~~ 148 (150)
T cd01840 124 PDWFYGDGVHPNPAGAKLYAALIAK 148 (150)
T ss_pred chhhcCCCCCCChhhHHHHHHHHHH
Confidence 3567789999999999999999875
No 23
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=95.66 E-value=0.0084 Score=43.51 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.6
Q ss_pred ceeecCCChhHHHHHHHHHHHHh
Q 032036 107 RINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 107 y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
.+..|++||++++|++||+.+.+
T Consensus 150 ~~~~DglH~n~~Gy~~~a~~l~~ 172 (174)
T cd01841 150 EYTTDGLHFNPKGYQKLLEILEE 172 (174)
T ss_pred cccCCCcccCHHHHHHHHHHHHh
Confidence 56789999999999999999864
No 24
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=95.62 E-value=0.0072 Score=45.15 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.2
Q ss_pred CcceeecCCChhHHHHHHHHHHHHhC
Q 032036 105 AVRINWDGVHYTEAANKWVYDQIING 130 (148)
Q Consensus 105 ~~y~fwD~~HPT~~~h~~iA~~~~~~ 130 (148)
.+++..|++||++++|++||+.+.+.
T Consensus 157 ~~~~~~DGiHpn~~Gy~~~A~~i~~~ 182 (191)
T PRK10528 157 PQWMQDDGIHPNRDAQPFIADWMAKQ 182 (191)
T ss_pred HhhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 34677899999999999999998753
No 25
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=95.43 E-value=0.0093 Score=44.70 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.8
Q ss_pred eeecCCChhHHHHHHHHHHHHh
Q 032036 108 INWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 108 ~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
...|++|||+++|++||+.++.
T Consensus 182 ~~~DGvH~~~~G~~~~a~~l~~ 203 (208)
T cd01839 182 SPVDGVHLDADQHAALGQALAS 203 (208)
T ss_pred CCCCccCcCHHHHHHHHHHHHH
Confidence 4689999999999999999874
No 26
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=95.18 E-value=0.012 Score=42.43 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=21.2
Q ss_pred cceeecCCChhHHHHHHHHHHHHh
Q 032036 106 VRINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 106 ~y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
+++.-|++||++++|++||+.+..
T Consensus 151 ~~~~~DgvHpn~~G~~~~a~~i~~ 174 (177)
T cd01822 151 ELMQSDGIHPNAEGQPIIAENVWP 174 (177)
T ss_pred hhhCCCCCCcCHHHHHHHHHHHHH
Confidence 456789999999999999999875
No 27
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=95.16 E-value=0.012 Score=43.16 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEEeccH
Q 032036 18 ARFFNSRLKAAVVQLRKDLPLAAMTYVDIFS 48 (148)
Q Consensus 18 ~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~ 48 (148)
.+.|=..++++++++++++|+.+++++-...
T Consensus 87 ~~~~~~~~~~~i~~~~~~~~~~~ii~~t~~~ 117 (199)
T cd01838 87 LDEYKENLRKIVSHLKSLSPKTKVILITPPP 117 (199)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEEeCCCC
Confidence 4566677899999999888999998886543
No 28
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=95.14 E-value=0.013 Score=46.99 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEEEeccHHH
Q 032036 17 VARFFNSRLKAAVVQLRKDLPLAAMTYVDIFSVK 50 (148)
Q Consensus 17 ~~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~~ 50 (148)
-.+.|-+.|+++|+.|++..|.+.|+++.++.+.
T Consensus 143 ~~~~~~~nL~~~L~~Lr~~~P~~~V~lv~~~~~~ 176 (288)
T cd01824 143 SPQTFVKNLRKALDILRDEVPRAFVNLVGLLNVA 176 (288)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCcEEEEEcCCCcH
Confidence 4688889999999999999999999999887764
No 29
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=95.13 E-value=0.013 Score=43.35 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.0
Q ss_pred cceeecCCChhHHHHHHHHHHHHh
Q 032036 106 VRINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 106 ~y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
.++..|++|||+.+|++||+.+..
T Consensus 173 ~~~~~DgvH~~~~G~~~~a~~i~~ 196 (200)
T cd01829 173 RLRTNDGIHFTAAGGRKLAFYVEK 196 (200)
T ss_pred EeecCCCceECHHHHHHHHHHHHH
Confidence 456679999999999999999875
No 30
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=95.12 E-value=0.016 Score=42.29 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=21.8
Q ss_pred CcceeecCCChhHHHHHHHHHHHHh
Q 032036 105 AVRINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 105 ~~y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
...+..|++||+++||++||+.+..
T Consensus 157 ~~~~~~DgvHp~~~Gy~~~a~~i~~ 181 (183)
T cd04501 157 KPGLLTDGLHPSREGYRVMAPLAEK 181 (183)
T ss_pred cccccCCCCCCCHHHHHHHHHHHHH
Confidence 4566789999999999999999875
No 31
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=95.06 E-value=0.014 Score=43.12 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=19.8
Q ss_pred ceeecCCChhHHHHHHHHHHHHh
Q 032036 107 RINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 107 y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
++..|++||++++|++||+.+..
T Consensus 169 ~~~~Dg~Hpn~~G~~~~a~~~~~ 191 (193)
T cd01835 169 LAATDGIHPNAAGYGWLAWLVLH 191 (193)
T ss_pred hhccCCCCCCHHHHHHHHHHHhc
Confidence 44469999999999999999864
No 32
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=94.97 E-value=0.017 Score=42.94 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.9
Q ss_pred ceeecCCChhHHHHHHHHHHHHh
Q 032036 107 RINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 107 y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
++..|++||+++||++||+.++.
T Consensus 174 ~~~~DgvHp~~~G~~~~a~~i~~ 196 (198)
T cd01821 174 EGPGDNTHFSEKGADVVARLVAE 196 (198)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh
Confidence 67789999999999999999875
No 33
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=94.92 E-value=0.017 Score=42.51 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEEec
Q 032036 18 ARFFNSRLKAAVVQLRKDLPLAAMTYVDI 46 (148)
Q Consensus 18 ~~~fN~~L~~~l~~l~~~~~~~~i~~~D~ 46 (148)
...|=..|.++++.+++++|+.+|++.-+
T Consensus 86 ~~~~~~~l~~li~~i~~~~~~~~iiv~~~ 114 (191)
T cd01836 86 IARWRKQLAELVDALRAKFPGARVVVTAV 114 (191)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 45677788899999998889999888754
No 34
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=93.48 E-value=0.5 Score=38.40 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=18.5
Q ss_pred ecCCChhHHHHHHHHHHHHh
Q 032036 110 WDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 110 wD~~HPT~~~h~~iA~~~~~ 129 (148)
-|++||++.||.++|+.+++
T Consensus 285 ~DgfHpsq~g~~l~a~~lW~ 304 (305)
T cd01826 285 VDGFHPSQIANALLAEVFWK 304 (305)
T ss_pred ccCCCccHHHHHHHHHHhhc
Confidence 58999999999999999885
No 35
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=92.84 E-value=0.05 Score=38.39 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=16.7
Q ss_pred CcceeecCCChhHHHHHHH
Q 032036 105 AVRINWDGVHYTEAANKWV 123 (148)
Q Consensus 105 ~~y~fwD~~HPT~~~h~~i 123 (148)
..+++.|++|||+++|++|
T Consensus 161 ~~~~~~D~~Hp~~~G~~~~ 179 (179)
T PF13472_consen 161 PKYYFSDGVHPNPAGHQLI 179 (179)
T ss_dssp HTCTBTTSSSBBHHHHHHH
T ss_pred hhhcCCCCCCcCHHHhCcC
Confidence 3578899999999999986
No 36
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=91.20 E-value=0.16 Score=38.09 Aligned_cols=25 Identities=12% Similarity=0.132 Sum_probs=21.2
Q ss_pred cceeecCCChhHHHHHHHHHHHHhC
Q 032036 106 VRINWDGVHYTEAANKWVYDQIING 130 (148)
Q Consensus 106 ~y~fwD~~HPT~~~h~~iA~~~~~~ 130 (148)
.+..+|++||+.++|+.||+.+...
T Consensus 183 ~~~~~Dg~H~n~~Gy~~~a~~l~~~ 207 (216)
T COG2755 183 ELLTEDGLHPNAKGYQALAEALAEV 207 (216)
T ss_pred ccccCCCCCcCHhhHHHHHHHHHHH
Confidence 3445999999999999999998753
No 37
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=90.78 E-value=0.5 Score=35.49 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeccH
Q 032036 19 RFFNSRLKAAVVQLRKDLPLAAMTYVDIFS 48 (148)
Q Consensus 19 ~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~ 48 (148)
..|..++...|+.+++++|+.-|+++....
T Consensus 74 ~~~~~~~~~fv~~iR~~hP~tPIllv~~~~ 103 (178)
T PF14606_consen 74 EEFRERLDGFVKTIREAHPDTPILLVSPIP 103 (178)
T ss_dssp TTHHHHHHHHHHHHHTT-SSS-EEEEE---
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 468889999999999999999999988443
No 38
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=79.01 E-value=0.67 Score=36.08 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeccHHHHHHHHh----hhhcCCCCCcccccCCCcccccc---CccCCCCccccC
Q 032036 19 RFFNSRLKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQ----AKKLGFENPLLACCGHGGKYNYD---KNRKCGSKVTVN 91 (148)
Q Consensus 19 ~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~----P~~yGf~n~~~~Cc~~gg~~~~~---~~~~C~~~~~~~ 91 (148)
..|=.-|++++.-|+...|..+|+++-.--+-.+.-.. |..-|...+...| +.|+-. ....|+-.
T Consensus 96 ~Ey~dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~----~~Ya~ac~~la~e~~l~---- 167 (245)
T KOG3035|consen 96 EEYKDNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETV----GTYAKACANLAQEIGLY---- 167 (245)
T ss_pred HHHHHHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhccchhccchhhhhHH----HHHHHHHHHHHHHhCCe----
Confidence 45667788888888877788888887665544442111 1111211111111 122100 00011110
Q ss_pred Ccccccc-cccCCCCcceeecCCChhHHHHHHHHHHHHh
Q 032036 92 GKEIMVA-KSCKVPAVRINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 92 g~~~~~~-~~C~~p~~y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
...+.+. ..-.|..+-.|||++|.|..|++++.+.++.
T Consensus 168 ~vdlws~~Q~~~dw~~~~ltDGLHlS~~G~~ivf~Ei~k 206 (245)
T KOG3035|consen 168 VVDLWSKMQESDDWQTSCLTDGLHLSPKGNKIVFDEILK 206 (245)
T ss_pred eeeHHhhhhhcccHHHHHhccceeeccccchhhHHHHHH
Confidence 0000000 0122344567999999999999999999876
No 39
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=78.90 E-value=1.6 Score=32.90 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.1
Q ss_pred CcceeecCCChhHHHHHHHHHHHHh
Q 032036 105 AVRINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 105 ~~y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
..+--.|++|..+.|||.+++.+++
T Consensus 156 ~~~~~~DgVHwn~~a~r~ls~lll~ 180 (183)
T cd01842 156 MQHRVRDGVHWNYVAHRRLSNLLLA 180 (183)
T ss_pred HhhcCCCCcCcCHHHHHHHHHHHHH
Confidence 3455689999999999999998864
No 40
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=62.33 E-value=18 Score=25.65 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Q 032036 12 TPFNDVARFFNSRLKAAVVQLRKDL 36 (148)
Q Consensus 12 ~~~n~~~~~fN~~L~~~l~~l~~~~ 36 (148)
+..++++..||..|...|+++++++
T Consensus 71 ~q~e~lt~rF~~aL~~~L~~yq~~H 95 (128)
T PRK13717 71 AQSKALSARFNTALEASLQAWQQKH 95 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5678899999999999999999875
No 41
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=58.08 E-value=36 Score=27.60 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCc----EEEEEeccHHHHHHHHhhhhcCCCCC
Q 032036 12 TPFNDVARFFNSRLKAAVVQLRKDLPLA----AMTYVDIFSVKHSLITQAKKLGFENP 65 (148)
Q Consensus 12 ~~~n~~~~~fN~~L~~~l~~l~~~~~~~----~i~~~D~~~~~~~vi~~P~~yGf~n~ 65 (148)
+.+.+=...||.+|.+.-.++..++..+ -|++-|.|+.|.+ .||.+.+
T Consensus 180 a~y~aNlk~f~~~La~~d~~i~~~L~pvk~Kpf~VFHDAY~YFE~------~ygl~~~ 231 (318)
T COG4531 180 AKYDANLKDFEAQLAALDKKVGEELAPVKGKPFFVFHDAYGYFEN------AYGLKPL 231 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEechHHHHHH------hhCcccc
Confidence 3444556789999998888887777543 4889999999997 7888765
No 42
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=49.94 E-value=40 Score=23.43 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Q 032036 12 TPFNDVARFFNSRLKAAVVQLRKDL 36 (148)
Q Consensus 12 ~~~n~~~~~fN~~L~~~l~~l~~~~ 36 (148)
++.+.++..||..|...|+++++++
T Consensus 58 ~q~~~~~~rF~~~L~~~L~~yq~~H 82 (112)
T TIGR02744 58 AQQKALLGRFNALLEAELQAWQAQH 82 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5678899999999999999999876
No 43
>KOG3670 consensus Phospholipase [Lipid transport and metabolism]
Probab=43.87 E-value=17 Score=30.75 Aligned_cols=38 Identities=26% Similarity=0.457 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEEEeccHHHHHHHHh
Q 032036 17 VARFFNSRLKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQ 56 (148)
Q Consensus 17 ~~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~ 56 (148)
-.+.|-+-+++.+.-|+...|.+.|.++=...+ .+++.
T Consensus 210 ~~~~~~~~i~~Al~~L~~nvPR~iV~lvg~~~~--~~l~q 247 (397)
T KOG3670|consen 210 PVDQHKRNIRKALEILRDNVPRTIVSLVGMFNV--SLLRQ 247 (397)
T ss_pred chhHHHHHHHHHHHHHHhcCCceEEEEecCCCH--HHHHH
Confidence 456677789999999999999988888777666 55544
No 44
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=42.27 E-value=20 Score=25.43 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=19.9
Q ss_pred CcceeecCCChhHHHHHHHHHHHH
Q 032036 105 AVRINWDGVHYTEAANKWVYDQII 128 (148)
Q Consensus 105 ~~y~fwD~~HPT~~~h~~iA~~~~ 128 (148)
+.|++-|.+||...|+-.+-+.|.
T Consensus 101 ~~yfm~D~iHlgw~GWv~vd~~i~ 124 (130)
T PF04914_consen 101 EPYFMQDTIHLGWKGWVYVDQAIY 124 (130)
T ss_dssp STTSBSSSSSB-THHHHHHHHHHH
T ss_pred CCceeeecccCchhhHHHHHHHHH
Confidence 468999999999999988888765
No 45
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=41.16 E-value=36 Score=29.03 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeccH
Q 032036 22 NSRLKAAVVQLRKDLPLAAMTYVDIFS 48 (148)
Q Consensus 22 N~~L~~~l~~l~~~~~~~~i~~~D~~~ 48 (148)
...+.+.+++|++..|++.++|+|++.
T Consensus 157 sg~~~~R~~~L~~~~~~ld~iYvDV~~ 183 (425)
T PF12905_consen 157 SGARFKRFDQLKETVPNLDFIYVDVWY 183 (425)
T ss_dssp TTHHHHHHHHHHHHTTT--EEEEESTT
T ss_pred cchHHHHHHHHhccccCCCeEEEEecc
Confidence 335566678888888999999999863
No 46
>PF06812 ImpA-rel_N: ImpA-related N-terminal; InterPro: IPR010657 This entry represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=37.11 E-value=12 Score=22.71 Aligned_cols=9 Identities=33% Similarity=0.733 Sum_probs=7.5
Q ss_pred eeecCCChh
Q 032036 108 INWDGVHYT 116 (148)
Q Consensus 108 ~fwD~~HPT 116 (148)
-|||..||.
T Consensus 52 ~~W~~l~P~ 60 (62)
T PF06812_consen 52 NYWDSLHPQ 60 (62)
T ss_pred HCCcccCCC
Confidence 489999995
No 47
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=34.63 E-value=95 Score=21.38 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Q 032036 12 TPFNDVARFFNSRLKAAVVQLRKDL 36 (148)
Q Consensus 12 ~~~n~~~~~fN~~L~~~l~~l~~~~ 36 (148)
+.....+..||+.|...|.++++++
T Consensus 57 ~q~~a~t~~F~~aL~~~L~~~~~~h 81 (111)
T PF09677_consen 57 EQVEALTQRFMQALEASLAEYQAEH 81 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567889999999999999998754
No 48
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=34.18 E-value=66 Score=24.70 Aligned_cols=27 Identities=7% Similarity=0.074 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeccH
Q 032036 22 NSRLKAAVVQLRKDLPLAAMTYVDIFS 48 (148)
Q Consensus 22 N~~L~~~l~~l~~~~~~~~i~~~D~~~ 48 (148)
++.....++++++++|+.+|+.-|.+.
T Consensus 19 ~~l~~~Fi~~yk~~~P~dev~~~DL~~ 45 (202)
T COG1182 19 RKLADEFIETYKEKHPNDEVIERDLAA 45 (202)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeeccc
Confidence 455567899999999999999999875
No 49
>PTZ00195 60S ribosomal protein L18; Provisional
Probab=32.58 E-value=40 Score=25.78 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCchhhhhccc
Q 032036 117 EAANKWVYDQIINGSYSDPPIPMEMACRVM 146 (148)
Q Consensus 117 ~~~h~~iA~~~~~~~~~~~p~~~~~~~~~~ 146 (148)
..+|+.|++.++.-....||++++.+.+-|
T Consensus 42 a~fnk~VakRL~~sr~nRppVsLSrI~r~~ 71 (198)
T PTZ00195 42 SGFNKVVYQRLIKSRSNRAPISLSRIAVVM 71 (198)
T ss_pred CHHHHHHHHHHhcccccCCceeHHHHHHHH
Confidence 467999999999999999999999997644
No 50
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.96 E-value=34 Score=28.30 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.4
Q ss_pred cceeecCCChhHHHHHHHHHHHHh
Q 032036 106 VRINWDGVHYTEAANKWVYDQIIN 129 (148)
Q Consensus 106 ~y~fwD~~HPT~~~h~~iA~~~~~ 129 (148)
.+--=|++|.|.++.+.+|.++.+
T Consensus 292 rlR~~DGIh~T~~Gkrkla~~~~k 315 (354)
T COG2845 292 RLRAKDGIHFTKEGKRKLAFYLEK 315 (354)
T ss_pred EEeccCCceechhhHHHHHHHHHH
Confidence 445569999999999999999875
No 51
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=29.57 E-value=62 Score=19.67 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCC--cEEEEEeccHHHHHHH--HhhhhcCCCCCc
Q 032036 25 LKAAVVQLRKDLPL--AAMTYVDIFSVKHSLI--TQAKKLGFENPL 66 (148)
Q Consensus 25 L~~~l~~l~~~~~~--~~i~~~D~~~~~~~vi--~~P~~yGf~n~~ 66 (148)
+.++|.++-.+.++ ..+.+.++...+.... =+|..|||....
T Consensus 6 ~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~ 51 (74)
T PF12872_consen 6 LKKLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFSSLS 51 (74)
T ss_dssp HHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSSSHH
T ss_pred HHHHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCCcHH
Confidence 34444444323333 3688888888888877 457899997653
No 52
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=29.41 E-value=98 Score=20.91 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeccH
Q 032036 24 RLKAAVVQLRKDLPLAAMTYVDIFS 48 (148)
Q Consensus 24 ~L~~~l~~l~~~~~~~~i~~~D~~~ 48 (148)
.+.-.+.+|..+||++.|+-+|+..
T Consensus 38 ~i~P~~~~La~~y~~v~Flkvdvde 62 (106)
T KOG0907|consen 38 AIAPKFEKLAEKYPDVVFLKVDVDE 62 (106)
T ss_pred hhhhHHHHHHHHCCCCEEEEEeccc
Confidence 4566788999999999999999988
No 53
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=27.62 E-value=1.6e+02 Score=19.46 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeccHHHHHHHHhhhhcCCCC
Q 032036 23 SRLKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQAKKLGFEN 64 (148)
Q Consensus 23 ~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~P~~yGf~n 64 (148)
+.|...++++.+++++.+|+.+|+... ++ .++||...
T Consensus 40 ~~l~~~l~~la~~~~~v~f~~vd~~~~--~l---~~~~~i~~ 76 (113)
T cd02957 40 KILDSHLEELAAKYPETKFVKINAEKA--FL---VNYLDIKV 76 (113)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEchhh--HH---HHhcCCCc
Confidence 456677778888889999999999865 43 34566543
No 54
>PTZ00469 60S ribosomal subunit protein L18; Provisional
Probab=27.06 E-value=58 Score=24.69 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCchhhhhccc
Q 032036 117 EAANKWVYDQIINGSYSDPPIPMEMACRVM 146 (148)
Q Consensus 117 ~~~h~~iA~~~~~~~~~~~p~~~~~~~~~~ 146 (148)
..+|+.||+.+..-....||+|++.+.+-+
T Consensus 42 a~fwk~Va~RL~~srrnr~pVnLSkI~r~~ 71 (187)
T PTZ00469 42 ANFNKIIAKRLIMPKRFRPPLSLSKLHRHM 71 (187)
T ss_pred ChHHHHHHHHHhcccccCCceeHHHHHHHh
Confidence 468899999999988899999999998654
No 55
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=26.59 E-value=1.2e+02 Score=20.42 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeccHHHHHHHHhhhhcCCCC
Q 032036 23 SRLKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQAKKLGFEN 64 (148)
Q Consensus 23 ~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~P~~yGf~n 64 (148)
+.+...+.+|.+++|+++++.+|+...-. + .++|+...
T Consensus 38 ~~~~p~l~~la~~~~~i~f~~Vd~~~~~~-l---~~~~~v~~ 75 (113)
T cd02989 38 KIMDKHLEILAKKHLETKFIKVNAEKAPF-L---VEKLNIKV 75 (113)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcccCHH-H---HHHCCCcc
Confidence 35566777777788999999999887432 2 24566554
No 56
>PRK13555 azoreductase; Provisional
Probab=25.05 E-value=1.3e+02 Score=22.90 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=23.2
Q ss_pred HHHHHH-HHHHHHHHhCCCcEEEEEeccHH
Q 032036 21 FNSRLK-AAVVQLRKDLPLAAMTYVDIFSV 49 (148)
Q Consensus 21 fN~~L~-~~l~~l~~~~~~~~i~~~D~~~~ 49 (148)
|+.+|. ..++.++++.|+..+.+.|.|..
T Consensus 18 ~s~~la~~f~~~~~~~~p~~~V~~~DL~~~ 47 (208)
T PRK13555 18 VSSKMYETFVSTYKEANPNTEITELDLFAL 47 (208)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 566665 46778888889999999998875
No 57
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=24.33 E-value=1.3e+02 Score=22.27 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHh-CCCcEEEEEeccHH
Q 032036 19 RFFNSRLKAAVVQLRKD-LPLAAMTYVDIFSV 49 (148)
Q Consensus 19 ~~fN~~L~~~l~~l~~~-~~~~~i~~~D~~~~ 49 (148)
..||..|.....+|+++ .|++.+.++....+
T Consensus 10 ~~~~~al~~aa~~l~~~~~p~l~l~~~~~~el 41 (164)
T PF11965_consen 10 EHYNSALYRAAARLNRDHCPGLELSVFAAAEL 41 (164)
T ss_pred hhhhHHHHHHHHHHhhccCCCeEEEEEeHHHh
Confidence 56889999999999888 89999998877654
No 58
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=23.66 E-value=81 Score=23.53 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Q 032036 16 DVARFFNSRLKAAVVQLRKDLPLA 39 (148)
Q Consensus 16 ~~~~~fN~~L~~~l~~l~~~~~~~ 39 (148)
++-..||.-+++.|.++++..|++
T Consensus 124 R~psaYn~f~k~ei~rik~~~p~i 147 (170)
T PF04690_consen 124 RVPSAYNRFMKEEIQRIKAENPDI 147 (170)
T ss_pred CCchhHHHHHHHHHHHHHhcCCCC
Confidence 456789999999999999999876
No 59
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=22.92 E-value=1.3e+02 Score=24.98 Aligned_cols=37 Identities=5% Similarity=0.141 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEeccHHHHHHHHhhhhcC
Q 032036 25 LKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQAKKLG 61 (148)
Q Consensus 25 L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~P~~yG 61 (148)
.++...+..++||++.+-..=+-++...++.+|..|.
T Consensus 200 f~~~~~eva~~yp~v~~~~~~vD~~~~~lv~~P~~fD 236 (352)
T TIGR02089 200 WDEVFAEVAAEYPDVEWDSYHIDALAARFVLKPETFD 236 (352)
T ss_pred HHHHHHHHHhhCCCceEeeehHHHHHHHHhcChhhCc
Confidence 3445556677899988777777788899999999986
No 60
>cd08445 PBP2_BenM_CatM_CatR The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold. This CD includes the C-terminal of LysR-type transcription regulators, BenM, CatM, and CatR, which are involved in the benzoate catabolism. The BenM and CatM are paralogs with overlapping functions. BenM responds synergistically to two effectors, benzoate and cis,cis-muconate, to activate expression of the benABCDE operon which is involved in benzoate catabolism, while CatM responses only to muconate. BenM and CatM share high protein sequence identity and bind to the operator-promoter regions that have similar DNA sequences. In Pseudomonas species, phenolic compounds are converted by different enzymes to central intermediates, such as protocatechuate and catechols. Generally, unsubstituted compounds, such as benzoate, are metabolized by an ortho-cleavage pathway. The catBCA operon encodes three enzymes
Probab=21.64 E-value=1.5e+02 Score=20.62 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEe--ccHHHHHHHHhhhhcCC
Q 032036 22 NSRLKAAVVQLRKDLPLAAMTYVD--IFSVKHSLITQAKKLGF 62 (148)
Q Consensus 22 N~~L~~~l~~l~~~~~~~~i~~~D--~~~~~~~vi~~P~~yGf 62 (148)
...|...+.++++++|++++-+.. ...+...+.+.-...||
T Consensus 13 ~~~l~~~l~~~~~~~P~i~l~i~~~~~~~~~~~l~~~~~Dl~i 55 (203)
T cd08445 13 YGLLPELIRRFRQAAPDVEIELIEMTTVQQIEALKEGRIDVGF 55 (203)
T ss_pred HhHHHHHHHHHHHHCCCeEEEEEeCChHHHHHHHHcCCCcEEE
Confidence 456788899999999999887774 44566666655555665
No 61
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=21.59 E-value=83 Score=21.08 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=23.8
Q ss_pred CCcceeecCCChhHH-HHHHHHHHHHhCCCCCCCC
Q 032036 104 PAVRINWDGVHYTEA-ANKWVYDQIINGSYSDPPI 137 (148)
Q Consensus 104 p~~y~fwD~~HPT~~-~h~~iA~~~~~~~~~~~p~ 137 (148)
|=++-+-|..||++. -.+.+|++|.+..+.||.+
T Consensus 37 ~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV 71 (93)
T PF07315_consen 37 PFEFTYIDIENPPENDHDQQFAERILEDELFYPLV 71 (93)
T ss_dssp -EEEEEEETTT----HHHHHHHHHHHTTSS-SSEE
T ss_pred ceEEEEEecCCCCccHHHHHHHHHHHhcccccceE
Confidence 346788899999996 6789999999999999843
No 62
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=21.44 E-value=48 Score=26.24 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEEEeccHHHHHHHHhhhhcCCCCCcccccCCC
Q 032036 17 VARFFNSRLKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQAKKLGFENPLLACCGHG 73 (148)
Q Consensus 17 ~~~~fN~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~P~~yGf~n~~~~Cc~~g 73 (148)
+...|...|.....+-++ -.|.-++--.+-.++.+++ +|. .-..+.++|||+|
T Consensus 6 ~g~~yE~~l~~~~~~~~k-~~G~~~TP~~i~~l~~~~~-~~~--~~~~VlDPacGsG 58 (311)
T PF02384_consen 6 LGDLYEYFLKKFAKESRK-KLGQFYTPREIVDLMVKLL-NPK--KGDSVLDPACGSG 58 (311)
T ss_dssp HHHHHHHHHHHHHHCTTT-SCGGC---HHHHHHHHHHH-TT---TTEEEEETT-TTS
T ss_pred HHHHHHHHHHHHHHHhcc-ccceeehHHHHHHHHHhhh-hcc--ccceeechhhhHH
Confidence 455666555554333332 2355566666677777777 222 2234789999987
No 63
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp. causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.
Probab=21.17 E-value=1.8e+02 Score=21.62 Aligned_cols=33 Identities=18% Similarity=0.086 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeccHHHHHHHHh
Q 032036 24 RLKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQ 56 (148)
Q Consensus 24 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~ 56 (148)
.|..+++..+.++|++++.+++.-.-+-+-+.+
T Consensus 32 ~lp~lv~~~N~r~P~LnL~~~~~~~~~~~~i~~ 64 (177)
T PF03421_consen 32 MLPALVAAENARYPGLNLHFFDSPEDFVQAIKE 64 (177)
T ss_pred HHHHHHHHHhhcCCCCceEEcCCcHHHHHHHHh
Confidence 356678888999999999999997777766644
No 64
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=20.83 E-value=1.9e+02 Score=23.91 Aligned_cols=38 Identities=8% Similarity=0.186 Sum_probs=31.1
Q ss_pred HHHHHHHHHHH-hCCCcEEEEEeccHHHHHHHHhhhhcC
Q 032036 24 RLKAAVVQLRK-DLPLAAMTYVDIFSVKHSLITQAKKLG 61 (148)
Q Consensus 24 ~L~~~l~~l~~-~~~~~~i~~~D~~~~~~~vi~~P~~yG 61 (148)
..++...+..+ ++|++.+-..-+-++...++.+|..|+
T Consensus 195 lf~~~~~eva~~~yp~I~~~~~~vD~~~~~Lv~~P~~fd 233 (348)
T PF00180_consen 195 LFREVFQEVAKQEYPDIEVEHMLVDAAAMQLVKNPEQFD 233 (348)
T ss_dssp HHHHHHHHHHHHTHTTSEEEEEEHHHHHHHHHHSGGGES
T ss_pred HHHHHHHHHHHhhcceeEeeeeechhhhheeecCCccee
Confidence 34555666666 789999888888899999999999986
No 65
>PRK04005 50S ribosomal protein L18e; Provisional
Probab=20.41 E-value=71 Score=22.10 Aligned_cols=29 Identities=10% Similarity=0.011 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCchhhhhcc
Q 032036 117 EAANKWVYDQIINGSYSDPPIPMEMACRV 145 (148)
Q Consensus 117 ~~~h~~iA~~~~~~~~~~~p~~~~~~~~~ 145 (148)
...|+.||+.+......+.++|+.+|.+.
T Consensus 18 ~~~~~~v~~rl~~~r~~y~vVNL~~L~~~ 46 (111)
T PRK04005 18 APIWKDVAERLEKPRRRRAEVNLSKINRY 46 (111)
T ss_pred CcHHHHHHHHHhCCCCccceEEHHHHHhh
Confidence 45789999999999999999999999753
No 66
>cd08448 PBP2_LTTR_aromatics_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type regulator similar to CbnR which is involved in the regulation of chlorocatechol breakdown. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Ve
Probab=20.34 E-value=1.7e+02 Score=19.88 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEe--ccHHHHHHHHhhhhcCC
Q 032036 22 NSRLKAAVVQLRKDLPLAAMTYVD--IFSVKHSLITQAKKLGF 62 (148)
Q Consensus 22 N~~L~~~l~~l~~~~~~~~i~~~D--~~~~~~~vi~~P~~yGf 62 (148)
+..|...+.++.+++|++++-+.. ...+...+.+.--..||
T Consensus 12 ~~~l~~~l~~~~~~~P~i~i~i~~~~~~~~~~~l~~~~~Di~i 54 (197)
T cd08448 12 YRGLPRILRAFRAEYPGIEVALHEMSSAEQIEALLRGELDLGF 54 (197)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHcCCcceEE
Confidence 456778899999999999887764 44556666554445555
No 67
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=20.16 E-value=1.3e+02 Score=24.91 Aligned_cols=37 Identities=11% Similarity=0.258 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCcEEEEEeccHHHHHHHHhhhhcC
Q 032036 25 LKAAVVQLRKDLPLAAMTYVDIFSVKHSLITQAKKLG 61 (148)
Q Consensus 25 L~~~l~~l~~~~~~~~i~~~D~~~~~~~vi~~P~~yG 61 (148)
.++...+..++||++.+-..=+-++...++.+|..|.
T Consensus 197 f~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fD 233 (344)
T PRK03437 197 WQRTVDEVAAEYPDVTVDYQHVDAATIFMVTDPSRFD 233 (344)
T ss_pred HHHHHHHHHhhCCCceEeehhHHHHHHHHhcCcccCc
Confidence 3455666777899987777666777789999999986
No 68
>smart00340 HALZ homeobox associated leucin zipper.
Probab=20.14 E-value=1.1e+02 Score=17.48 Aligned_cols=16 Identities=38% Similarity=0.283 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 032036 20 FFNSRLKAAVVQLRKD 35 (148)
Q Consensus 20 ~fN~~L~~~l~~l~~~ 35 (148)
.=|++|+..+++|++.
T Consensus 19 eeNrRL~ke~~eLral 34 (44)
T smart00340 19 EENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3499999999999863
Done!