Query 032037
Match_columns 148
No_of_seqs 314 out of 1269
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1748 Acyl carrier protein/N 99.9 1.2E-27 2.5E-32 177.4 7.4 94 55-148 36-131 (131)
2 PRK07117 acyl carrier protein; 99.8 2E-20 4.4E-25 128.5 7.5 78 66-144 1-79 (79)
3 PRK05350 acyl carrier protein; 99.8 9.6E-20 2.1E-24 125.0 7.7 80 66-145 2-81 (82)
4 PRK05883 acyl carrier protein; 99.8 2.2E-19 4.7E-24 126.3 9.2 83 64-146 8-90 (91)
5 CHL00124 acpP acyl carrier pro 99.8 1.2E-19 2.7E-24 123.9 7.6 82 66-147 1-82 (82)
6 PRK08172 putative acyl carrier 99.8 1.1E-19 2.3E-24 125.6 7.2 77 70-146 4-80 (82)
7 PRK05828 acyl carrier protein; 99.8 1.9E-19 4E-24 125.1 8.1 81 66-147 1-82 (84)
8 PRK12449 acyl carrier protein; 99.8 2.8E-19 6E-24 121.6 8.1 79 66-144 1-79 (80)
9 PTZ00171 acyl carrier protein; 99.8 4.2E-19 9.2E-24 134.9 8.3 83 65-147 65-147 (148)
10 PRK07639 acyl carrier protein; 99.8 8.8E-19 1.9E-23 121.9 8.8 81 66-146 1-84 (86)
11 TIGR00517 acyl_carrier acyl ca 99.8 1.9E-18 4.1E-23 116.7 7.0 75 69-143 2-76 (77)
12 COG0236 AcpP Acyl carrier prot 99.7 9.7E-18 2.1E-22 114.6 7.4 77 68-144 3-79 (80)
13 PRK06508 acyl carrier protein; 99.7 2.7E-17 5.9E-22 116.2 6.1 79 69-147 2-91 (93)
14 PRK09184 acyl carrier protein; 99.7 6.9E-17 1.5E-21 113.2 7.8 78 68-145 4-88 (89)
15 PRK00982 acpP acyl carrier pro 99.7 1E-16 2.2E-21 108.2 7.1 76 69-144 2-77 (78)
16 PRK07081 acyl carrier protein; 99.6 2.3E-15 4.9E-20 104.0 6.3 74 72-146 2-79 (83)
17 PRK05087 D-alanine--poly(phosp 99.6 7.2E-15 1.6E-19 100.7 7.1 74 70-143 2-77 (78)
18 PF00550 PP-binding: Phosphopa 99.5 3E-14 6.5E-19 92.6 8.1 67 73-140 1-67 (67)
19 PF14573 PP-binding_2: Acyl-ca 99.4 1.8E-12 3.9E-17 90.5 6.9 79 67-146 7-90 (96)
20 TIGR01688 dltC D-alanine--poly 99.2 1.7E-11 3.7E-16 83.2 5.5 68 73-141 2-72 (73)
21 TIGR02813 omega_3_PfaA polyket 98.9 4.9E-09 1.1E-13 106.8 8.1 79 66-144 1303-1383(2582)
22 smart00823 PKS_PP Phosphopante 98.8 5.6E-08 1.2E-12 63.3 8.2 74 69-143 11-85 (86)
23 PRK06060 acyl-CoA synthetase; 98.4 1E-06 2.2E-11 79.7 8.3 75 69-144 544-619 (705)
24 TIGR02813 omega_3_PfaA polyket 98.1 3.8E-06 8.1E-11 86.3 6.4 79 66-144 1207-1287(2582)
25 TIGR03443 alpha_am_amid L-amin 98.1 9.9E-06 2.1E-10 78.2 8.4 77 67-144 845-921 (1389)
26 PRK10252 entF enterobactin syn 97.9 3.5E-05 7.7E-10 73.6 8.0 75 67-144 975-1049(1296)
27 PRK12467 peptide synthase; Pro 97.6 0.00014 3E-09 77.3 7.6 73 67-142 3602-3674(3956)
28 PRK05691 peptide synthase; Val 97.5 0.00022 4.7E-09 76.3 8.0 76 66-144 582-657 (4334)
29 PRK05691 peptide synthase; Val 97.5 0.00031 6.7E-09 75.2 8.2 74 67-143 4238-4311(4334)
30 PF07377 DUF1493: Protein of u 97.5 0.00026 5.7E-09 51.1 5.4 59 69-127 2-64 (111)
31 PRK12316 peptide synthase; Pro 97.5 0.00032 7E-09 76.0 7.9 74 67-143 5069-5142(5163)
32 PRK12467 peptide synthase; Pro 97.4 0.00041 8.8E-09 73.9 7.6 74 67-143 1027-1100(3956)
33 PRK12316 peptide synthase; Pro 97.2 0.00071 1.5E-08 73.5 7.2 74 67-143 2513-2586(5163)
34 COG3433 Aryl carrier domain [S 97.1 0.0016 3.4E-08 44.1 5.4 68 76-145 4-71 (74)
35 KOG1202 Animal-type fatty acid 97.0 0.0004 8.8E-09 67.6 2.4 55 73-128 2007-2062(2376)
36 PF10501 Ribosomal_L50: Riboso 96.4 0.025 5.5E-07 40.8 8.0 75 67-142 5-81 (112)
37 TIGR02372 4_coum_CoA_lig 4-cou 94.9 0.14 3E-06 44.0 7.8 80 65-144 2-93 (386)
38 PF08766 DEK_C: DEK C terminal 80.4 3.9 8.5E-05 25.5 4.0 25 101-125 17-41 (54)
39 KOG1178 Non-ribosomal peptide 80.1 2.2 4.8E-05 41.7 4.1 54 88-142 614-667 (1032)
40 smart00151 SWIB SWI complex, B 62.1 19 0.0004 24.0 4.3 64 54-118 9-75 (77)
41 KOG2452 Formyltetrahydrofolate 62.0 19 0.00042 32.9 5.5 73 72-146 324-397 (881)
42 smart00550 Zalpha Z-DNA-bindin 46.9 17 0.00036 23.6 2.0 46 66-117 2-49 (68)
43 PF03471 CorC_HlyC: Transporte 46.8 30 0.00066 22.8 3.3 29 111-142 16-44 (81)
44 PF00874 PRD: PRD domain; Int 43.1 25 0.00054 22.4 2.4 21 107-127 59-79 (89)
45 PF02201 SWIB: SWIB/MDM2 domai 41.6 4.2 9E-05 27.1 -1.6 64 52-116 7-73 (76)
46 KOG1142 Transcription initiati 37.6 7.4 0.00016 32.3 -1.0 74 55-132 162-235 (258)
47 COG1905 NuoE NADH:ubiquinone o 37.1 21 0.00044 27.7 1.4 66 72-145 93-158 (160)
48 PF04028 DUF374: Domain of unk 30.5 45 0.00097 22.3 2.1 27 7-34 32-58 (74)
49 PF09346 SMI1_KNR4: SMI1 / KNR 29.4 36 0.00078 23.0 1.6 17 109-125 5-21 (130)
50 smart00860 SMI1_KNR4 SMI1 / KN 27.7 53 0.0011 21.4 2.1 18 109-126 5-22 (129)
51 COG0232 Dgt dGTP triphosphohyd 27.5 30 0.00066 30.6 1.1 14 17-32 131-144 (412)
52 PRK00157 rplL 50S ribosomal pr 23.9 73 0.0016 23.6 2.4 21 102-122 15-35 (123)
53 PF14568 SUKH_6: SMI1-KNR4 cel 23.4 63 0.0014 21.9 1.9 17 109-125 2-18 (120)
54 TIGR00855 L12 ribosomal protei 22.6 78 0.0017 23.6 2.3 22 101-122 15-36 (126)
55 PF06720 Phi-29_GP16_7: Bacter 22.5 1.5E+02 0.0032 21.9 3.7 32 113-144 77-113 (130)
56 COG0851 MinE Septum formation 21.6 94 0.002 21.8 2.4 28 64-91 35-62 (88)
57 COG1669 Predicted nucleotidylt 21.0 3.2E+02 0.0068 19.4 6.0 55 71-125 10-77 (97)
58 PF03776 MinE: Septum formatio 20.9 58 0.0013 21.4 1.2 26 66-91 25-50 (70)
59 COG0222 RplL Ribosomal protein 20.5 92 0.002 23.2 2.3 18 105-122 18-35 (124)
60 TIGR01215 minE cell division t 20.2 63 0.0014 22.0 1.3 24 68-91 38-61 (81)
No 1
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=1.2e-27 Score=177.36 Aligned_cols=94 Identities=51% Similarity=0.746 Sum_probs=89.4
Q ss_pred HHHHHHhcCCC--CChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCC
Q 032037 55 QLSRQMCASTS--ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTC 132 (148)
Q Consensus 55 ~~~r~~~~~~~--~t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~T 132 (148)
++.|.|+...+ ++++++.++|..+++.+.++++++++++++|.+|||+||||.||++|+|||||||+||+++++++.|
T Consensus 36 ~l~r~~s~~~p~~l~k~~v~~RVl~VVk~~dki~~~k~~~~s~f~~DLGlDSLD~VEiVMAlEEEFgiEIpd~dAdki~t 115 (131)
T KOG1748|consen 36 GLLRSYSAELPRCLAKKEVVDRVLDVVKKFDKIDPSKLTTDSDFFKDLGLDSLDTVEIVMALEEEFGIEIPDEDADKIKT 115 (131)
T ss_pred hHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhcCCccccchhhHHHHhcCCcccccchhhhhhHHHhCCccCcchhhhhCC
Confidence 56788888766 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCC
Q 032037 133 CADVARYIASEAGEKE 148 (148)
Q Consensus 133 V~dlv~~I~~~~~ake 148 (148)
++++++||.++.+.+|
T Consensus 116 ~~da~~yI~~~~d~ke 131 (131)
T KOG1748|consen 116 VRDAADYIADKPDVKE 131 (131)
T ss_pred HHHHHHHHHhcccccC
Confidence 9999999999998775
No 2
>PRK07117 acyl carrier protein; Validated
Probab=99.83 E-value=2e-20 Score=128.49 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=74.3
Q ss_pred CChHHHHHHHHHHHHhhh-CCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 032037 66 ANPDEIMHRVIALVKKFD-KTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 144 (148)
Q Consensus 66 ~t~~eI~~~I~~il~~~l-~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~ 144 (148)
+++++|.++|++++++.+ ++++++|+++++| .|||+|||+++++++++|++||++||++++.++.||+++++||.+++
T Consensus 1 M~~~ei~~~v~~ii~e~~p~i~~~~I~~~~~l-~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~~ 79 (79)
T PRK07117 1 MDKQRIFDILVRHIREVLPDLDQHQFQPEDSL-VDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAKL 79 (79)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCHHHCCCCCCh-hhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHhC
Confidence 467899999999999999 7999999999999 68999999999999999999999999999999999999999999874
No 3
>PRK05350 acyl carrier protein; Provisional
Probab=99.81 E-value=9.6e-20 Score=125.02 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=76.7
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhhC
Q 032037 66 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEAG 145 (148)
Q Consensus 66 ~t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~~ 145 (148)
++++++.++|++++++.+++++++++++++|..+|||||++.++++++||++|||+||++++..+.||+++++||.++.+
T Consensus 2 m~~~~i~~~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~~ 81 (82)
T PRK05350 2 MTREEILERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLLK 81 (82)
T ss_pred CCHHHHHHHHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHhc
Confidence 57889999999999999999999999999988999999999999999999999999999999999999999999998864
No 4
>PRK05883 acyl carrier protein; Validated
Probab=99.80 E-value=2.2e-19 Score=126.27 Aligned_cols=83 Identities=22% Similarity=0.324 Sum_probs=78.9
Q ss_pred CCCChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 032037 64 TSANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 143 (148)
Q Consensus 64 ~~~t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~ 143 (148)
.+.++++|.+++++++++.++++++.|+++++|..+||||||++++++++||++|||+||++++.++.||+++++||.++
T Consensus 8 ~~~~~~~I~~~l~~iia~~l~v~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~~ 87 (91)
T PRK05883 8 MTSSPSTVSATLLSILRDDLNVDLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAAK 87 (91)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hCC
Q 032037 144 AGE 146 (148)
Q Consensus 144 ~~a 146 (148)
.+.
T Consensus 88 ~~~ 90 (91)
T PRK05883 88 VRD 90 (91)
T ss_pred ccC
Confidence 653
No 5
>CHL00124 acpP acyl carrier protein; Validated
Probab=99.80 E-value=1.2e-19 Score=123.89 Aligned_cols=82 Identities=37% Similarity=0.602 Sum_probs=78.0
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhhC
Q 032037 66 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEAG 145 (148)
Q Consensus 66 ~t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~~ 145 (148)
+++++|.++|.+++++.++++++.++++++|..+|||||+++++|++++|++|||+||++++.++.|++++++||.++++
T Consensus 1 M~~~~i~~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~ 80 (82)
T CHL00124 1 MTKNDIFEKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKIN 80 (82)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHhc
Confidence 46789999999999999999999999999997789999999999999999999999999999999999999999999987
Q ss_pred CC
Q 032037 146 EK 147 (148)
Q Consensus 146 ak 147 (148)
.|
T Consensus 81 ~~ 82 (82)
T CHL00124 81 KK 82 (82)
T ss_pred cC
Confidence 65
No 6
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=99.80 E-value=1.1e-19 Score=125.60 Aligned_cols=77 Identities=25% Similarity=0.412 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhhCC
Q 032037 70 EIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEAGE 146 (148)
Q Consensus 70 eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~~a 146 (148)
++.+++++++++.+++++++|+++++|.+||||||+++++|+++||++|||+||++++.++.|++++++||.+++..
T Consensus 4 ~i~~~v~~iiae~l~v~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~~~ 80 (82)
T PRK08172 4 DIEARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSLES 80 (82)
T ss_pred cHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999998754
No 7
>PRK05828 acyl carrier protein; Validated
Probab=99.80 E-value=1.9e-19 Score=125.06 Aligned_cols=81 Identities=25% Similarity=0.364 Sum_probs=76.0
Q ss_pred CChHHHHHHHHHHHHh-hhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 032037 66 ANPDEIMHRVIALVKK-FDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 144 (148)
Q Consensus 66 ~t~~eI~~~I~~il~~-~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~ 144 (148)
+++++|.++|++++++ .++++++.++++++| .|||+|||++++++++||++|||+||++++.++.|++++++||.++.
T Consensus 1 m~~~eI~~~i~~ii~e~~~~~~~d~i~~~~~~-~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~ 79 (84)
T PRK05828 1 MQEMEILLKIKEIAKKKNFAVTLDESNINKPY-RELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELK 79 (84)
T ss_pred CCHHHHHHHHHHHHHHhccCCCcccccCCCCH-HhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHH
Confidence 5789999999999998 589999999999999 78999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 032037 145 GEK 147 (148)
Q Consensus 145 ~ak 147 (148)
..+
T Consensus 80 ~~~ 82 (84)
T PRK05828 80 KQK 82 (84)
T ss_pred hcc
Confidence 654
No 8
>PRK12449 acyl carrier protein; Provisional
Probab=99.80 E-value=2.8e-19 Score=121.64 Aligned_cols=79 Identities=28% Similarity=0.561 Sum_probs=75.7
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 032037 66 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 144 (148)
Q Consensus 66 ~t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~ 144 (148)
+++++|.+++++++++.+++++..++++++|..+|||||+++++|++++|++|||+||++++.++.|++++++||.+++
T Consensus 1 m~~~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 79 (80)
T PRK12449 1 MTREEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQRL 79 (80)
T ss_pred CCHHHHHHHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHhc
Confidence 4688999999999999999999999999999889999999999999999999999999999999999999999998875
No 9
>PTZ00171 acyl carrier protein; Provisional
Probab=99.78 E-value=4.2e-19 Score=134.95 Aligned_cols=83 Identities=40% Similarity=0.656 Sum_probs=79.6
Q ss_pred CCChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 032037 65 SANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 144 (148)
Q Consensus 65 ~~t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~ 144 (148)
.++++++.++|++++++.+++++++|+++++|.+|||||||+.+||+++||++|||+||++++.++.|++++++||.++.
T Consensus 65 ~~~~~~v~~~l~eiiae~l~vd~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~V~~~~ 144 (148)
T PTZ00171 65 LLSKEDVLTRVKKVVKNFEKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDYIEQNN 144 (148)
T ss_pred ccCHHHHHHHHHHHHHHHhCCCHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHHHHHHHH
Confidence 36789999999999999999999999999999889999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 032037 145 GEK 147 (148)
Q Consensus 145 ~ak 147 (148)
++|
T Consensus 145 ~~~ 147 (148)
T PTZ00171 145 MAK 147 (148)
T ss_pred hcc
Confidence 776
No 10
>PRK07639 acyl carrier protein; Provisional
Probab=99.78 E-value=8.8e-19 Score=121.94 Aligned_cols=81 Identities=14% Similarity=0.281 Sum_probs=75.3
Q ss_pred CChHHHHHHHHHHHHhhhCCCC-CCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhh--ccCCCHHHHHHHHHH
Q 032037 66 ANPDEIMHRVIALVKKFDKTDA-HKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKA--DKLTCCADVARYIAS 142 (148)
Q Consensus 66 ~t~~eI~~~I~~il~~~l~vd~-~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl--~~~~TV~dlv~~I~~ 142 (148)
+++++|.++|+++|++.+++++ ++++++++|.++||+||+++++++++||++|||+||++++ .++.||+++++||.+
T Consensus 1 M~~~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~ 80 (86)
T PRK07639 1 MRREALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEE 80 (86)
T ss_pred CCHHHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHH
Confidence 4788999999999999999975 8899999999999999999999999999999999999987 699999999999998
Q ss_pred hhCC
Q 032037 143 EAGE 146 (148)
Q Consensus 143 ~~~a 146 (148)
+.+.
T Consensus 81 ~~~~ 84 (86)
T PRK07639 81 LQPL 84 (86)
T ss_pred hhcc
Confidence 7643
No 11
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=99.76 E-value=1.9e-18 Score=116.74 Aligned_cols=75 Identities=47% Similarity=0.723 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 032037 69 DEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 143 (148)
Q Consensus 69 ~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~ 143 (148)
+++.++|++++++.+++++++++++++|..+|||||+++++|++.+|++||++||++++.++.|++++++||.++
T Consensus 2 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 76 (77)
T TIGR00517 2 QEIFEKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEEN 76 (77)
T ss_pred hHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHhc
Confidence 478999999999999999999999999988999999999999999999999999999999999999999999875
No 12
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=9.7e-18 Score=114.55 Aligned_cols=77 Identities=40% Similarity=0.614 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 032037 68 PDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 144 (148)
Q Consensus 68 ~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~ 144 (148)
...+.+++++++.+.+++++.+++++++|..|||+|||++++|+++||++|||+||++++.++.|++++++||.++.
T Consensus 3 ~~~~~~~i~~ii~e~l~~~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~~ 79 (80)
T COG0236 3 MEAIEERVKDIIAEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEELL 79 (80)
T ss_pred hHHHHHHHHHHHHHHhCCchhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHhc
Confidence 35689999999999999999999999999767999999999999999999999999999999999999999999864
No 13
>PRK06508 acyl carrier protein; Provisional
Probab=99.70 E-value=2.7e-17 Score=116.22 Aligned_cols=79 Identities=19% Similarity=0.350 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhc-----------cCCCHHHHH
Q 032037 69 DEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKAD-----------KLTCCADVA 137 (148)
Q Consensus 69 ~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~-----------~~~TV~dlv 137 (148)
+.+.++|++++++.+++++++|+++++|.++||||||++++|+++||++|||+||++++. .+.|+++++
T Consensus 2 ~~i~ekv~~Ilae~~~vd~~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i~~ee~~~~~n~~~~~~~~~~~l~~~~ 81 (93)
T PRK06508 2 SSTFDKVADIIAETSDIPRDTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLPLEQWTQEVNEGKVPTEEYFVLKNLC 81 (93)
T ss_pred hHHHHHHHHHHHHHhCCCHHHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCccCHHHHHHhhcccccccchHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999864 455888999
Q ss_pred HHHHHhhCCC
Q 032037 138 RYIASEAGEK 147 (148)
Q Consensus 138 ~~I~~~~~ak 147 (148)
.+|.+...+|
T Consensus 82 ~~i~~~~~~~ 91 (93)
T PRK06508 82 AKIDELVAAK 91 (93)
T ss_pred HHHHHHHHhh
Confidence 9999877665
No 14
>PRK09184 acyl carrier protein; Provisional
Probab=99.70 E-value=6.9e-17 Score=113.25 Aligned_cols=78 Identities=14% Similarity=0.297 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHhhhCC---CCCCCCCCCCc-cccCCCChhHHHHHHHHHHHHhCCccChhh---hccCCCHHHHHHHH
Q 032037 68 PDEIMHRVIALVKKFDKT---DAHKVTETADF-QKDLSLDSLDRVELVMAFEEEFSVEIPEEK---ADKLTCCADVARYI 140 (148)
Q Consensus 68 ~~eI~~~I~~il~~~l~v---d~~~It~d~~l-~~dLGlDSLd~VELv~~LEeeFgIeIp~~d---l~~~~TV~dlv~~I 140 (148)
-+++.++|+++|.+.+++ ++++|+++++| ..+||+||+++++|++++|++||++||+++ +..+.||+++++||
T Consensus 4 ~~~l~~~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~I 83 (89)
T PRK09184 4 MTALERELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAYV 83 (89)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHHH
Confidence 468999999999999984 89999999996 557999999999999999999999998765 45589999999999
Q ss_pred HHhhC
Q 032037 141 ASEAG 145 (148)
Q Consensus 141 ~~~~~ 145 (148)
.++..
T Consensus 84 ~~~~~ 88 (89)
T PRK09184 84 AAHRT 88 (89)
T ss_pred HHhhc
Confidence 98654
No 15
>PRK00982 acpP acyl carrier protein; Provisional
Probab=99.68 E-value=1e-16 Score=108.20 Aligned_cols=76 Identities=43% Similarity=0.656 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 032037 69 DEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 144 (148)
Q Consensus 69 ~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~ 144 (148)
.++.+++++++++.++++++.++++++|..++||||++.++++..+|++||+++|++++.++.|++++++||.++.
T Consensus 2 ~~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 77 (78)
T PRK00982 2 SEIFEKVKKIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKHQ 77 (78)
T ss_pred hHHHHHHHHHHHHHHCCCHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHHhc
Confidence 3688999999999999999999999999889999999999999999999999999999999999999999998764
No 16
>PRK07081 acyl carrier protein; Provisional
Probab=99.59 E-value=2.3e-15 Score=104.00 Aligned_cols=74 Identities=23% Similarity=0.404 Sum_probs=66.3
Q ss_pred HHHHHHHHHhh--hCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhc--cCCCHHHHHHHHHHhhCC
Q 032037 72 MHRVIALVKKF--DKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKAD--KLTCCADVARYIASEAGE 146 (148)
Q Consensus 72 ~~~I~~il~~~--l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~--~~~TV~dlv~~I~~~~~a 146 (148)
.++|++++.+. ++++++.++++++| .++||||+++++++++||++|||+||++++. .+.|+++++++|.++.+.
T Consensus 2 ~~~i~~ii~~~~~~~~~~~~i~~d~~l-~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~~ 79 (83)
T PRK07081 2 KNTIRTILKKVAKLEVPIDSIADDADL-YEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQDA 79 (83)
T ss_pred hHHHHHHHHHHHcCCCCHHhcCCCCCH-hhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHhh
Confidence 57889999998 45577899999999 6899999999999999999999999999984 599999999999987654
No 17
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=99.57 E-value=7.2e-15 Score=100.68 Aligned_cols=74 Identities=19% Similarity=0.358 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhcc--CCCHHHHHHHHHHh
Q 032037 70 EIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADK--LTCCADVARYIASE 143 (148)
Q Consensus 70 eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~--~~TV~dlv~~I~~~ 143 (148)
++.++|+++|.+..+.+..+++++++|..++++||+++++|+++||++|||+||++++.. +.|++.+++||.+.
T Consensus 2 ~i~~~I~~iL~~~~~~~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~l 77 (78)
T PRK05087 2 DFKEQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEEL 77 (78)
T ss_pred cHHHHHHHHHHHHhCCChhccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHHc
Confidence 478899999999988888889999999777779999999999999999999999999855 99999999999875
No 18
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=99.55 E-value=3e-14 Score=92.63 Aligned_cols=67 Identities=34% Similarity=0.552 Sum_probs=63.8
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHH
Q 032037 73 HRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYI 140 (148)
Q Consensus 73 ~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I 140 (148)
++|++++++.+++++++++++++| .++|+||++.++++..+|++||+++|..++.+..|++++++||
T Consensus 1 e~l~~~~~~~l~~~~~~i~~~~~~-~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 1 EQLREIIAEVLGVDPEEIDPDTDF-FDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHTSSGGCTSTTSBT-TTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCcCHhhCCCCCCH-HHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 578899999999999999999999 5899999999999999999999999999999999999999986
No 19
>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A.
Probab=99.37 E-value=1.8e-12 Score=90.50 Aligned_cols=79 Identities=30% Similarity=0.576 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCCCCCCCCc-----cccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHH
Q 032037 67 NPDEIMHRVIALVKKFDKTDAHKVTETADF-----QKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIA 141 (148)
Q Consensus 67 t~~eI~~~I~~il~~~l~vd~~~It~d~~l-----~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~ 141 (148)
+-+.+.++|..++++++.-+ .++++.+.+ .+++.|||||.||+++.+|++|+|.||++.++++.|++++++||.
T Consensus 7 d~nav~~~i~g~~kkyl~~~-~~it~~skL~e~rt~e~r~wD~LDtVefvldVEe~F~V~IpDE~aDN~~tvqeIadfvv 85 (96)
T PF14573_consen 7 DINAVTEYILGMLKKYLSEG-EEITYTSKLEESRTKEDRAWDSLDTVEFVLDVEEEFDVTIPDETADNIKTVQEIADFVV 85 (96)
T ss_dssp -HHHHHHHHHHHHHTTB-TT-----TTS-GGGSBBTTSSB--HHHHHHHHHHHHHHHT----HHHHTT--SHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCC-CccChhhhhHHhccccccccchhhhHHHHHhHHHHcCcccCccccchhhHHHHHHHHHH
Confidence 34678889999999886432 234444443 478999999999999999999999999999999999999999999
Q ss_pred HhhCC
Q 032037 142 SEAGE 146 (148)
Q Consensus 142 ~~~~a 146 (148)
+..+.
T Consensus 86 ~~r~~ 90 (96)
T PF14573_consen 86 QERQS 90 (96)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 87654
No 20
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=99.23 E-value=1.7e-11 Score=83.15 Aligned_cols=68 Identities=16% Similarity=0.362 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCccccCCC-ChhHHHHHHHHHHHHhCCccChhhh--ccCCCHHHHHHHHH
Q 032037 73 HRVIALVKKFDKTDAHKVTETADFQKDLSL-DSLDRVELVMAFEEEFSVEIPEEKA--DKLTCCADVARYIA 141 (148)
Q Consensus 73 ~~I~~il~~~l~vd~~~It~d~~l~~dLGl-DSLd~VELv~~LEeeFgIeIp~~dl--~~~~TV~dlv~~I~ 141 (148)
++|+++++++.+.+.....++++| -+.|+ ||++.|+|+.+||++|||+||+.++ +++.|++.++++|.
T Consensus 2 e~i~eIL~~i~~~~~~~~~~d~~L-~~~GllDS~~~v~Li~~lE~ef~I~i~~~el~~enf~S~~~i~~~v~ 72 (73)
T TIGR01688 2 NGVLDILAEVTGSDDVKENPDLEL-FEEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIVAKLE 72 (73)
T ss_pred hHHHHHHHHHhcCcccccCccHHH-HHccchhHHHHHHHHHHHHHHhCCccCHHHcCHHHhcCHHHHHHHHh
Confidence 578889999877655567889999 56675 9999999999999999999999996 88999999999886
No 21
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.87 E-value=4.9e-09 Score=106.76 Aligned_cols=79 Identities=18% Similarity=0.319 Sum_probs=75.0
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhC--CccChhhhccCCCHHHHHHHHHHh
Q 032037 66 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFS--VEIPEEKADKLTCCADVARYIASE 143 (148)
Q Consensus 66 ~t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFg--IeIp~~dl~~~~TV~dlv~~I~~~ 143 (148)
.+.+++.++|++++++.++++.+.++++.+|..|||+||++.+|+++.+|++|+ .+++++++.++.|++++++||..+
T Consensus 1303 ~~~~~v~~~vl~vvae~tgyp~e~L~~d~~le~DLGiDSI~~vEil~~le~~f~~~~~i~~e~l~~l~Tl~div~~i~~~ 1382 (2582)
T TIGR02813 1303 TDLIQIQNVMLEVVADKTGYPTEMLELEMDMEADLGIDSIKRVEILGTVQDTLPDLPELSPEDLAECRTLGEIVSYMQSK 1382 (2582)
T ss_pred ccHHHHHHHHHHHHHHHhCCCHHHcCcccCchhhcCCCHHHHHHHHHHHHHhcCCcCCCChhHhhhcccHHHHHHHHhhc
Confidence 456799999999999999999999999999999999999999999999999999 899999999999999999999875
Q ss_pred h
Q 032037 144 A 144 (148)
Q Consensus 144 ~ 144 (148)
.
T Consensus 1383 ~ 1383 (2582)
T TIGR02813 1383 V 1383 (2582)
T ss_pred c
Confidence 4
No 22
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=98.78 E-value=5.6e-08 Score=63.30 Aligned_cols=74 Identities=26% Similarity=0.271 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCC-CCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 032037 69 DEIMHRVIALVKKFDKTDAHK-VTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 143 (148)
Q Consensus 69 ~eI~~~I~~il~~~l~vd~~~-It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~ 143 (148)
..+.+.+...+...++..... ++.+.+| .++|+||+..+++...++++|++++|..++....|+..+++++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~~ 85 (86)
T smart00823 11 RLLLDLVREQVAAVLGHAAAEAIDPDRPF-RDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAE 85 (86)
T ss_pred HHHHHHHHHHHHHHHCCCccccCCCCCCH-HHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHHh
Confidence 356777888888888877666 4889999 7899999999999999999999999999998999999999999865
No 23
>PRK06060 acyl-CoA synthetase; Validated
Probab=98.40 E-value=1e-06 Score=79.66 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhhhCCC-CCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 032037 69 DEIMHRVIALVKKFDKTD-AHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 144 (148)
Q Consensus 69 ~eI~~~I~~il~~~l~vd-~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~ 144 (148)
..+.+.|...+++.++.+ ++.++++.+| .+||+|||+.+++...|++.||+++|...+.+..|+..++++|.+.+
T Consensus 544 ~~~~~~v~~~~a~vl~~~~~~~i~~~~~f-~~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~~~ 619 (705)
T PRK06060 544 RLVVDAVCAEAAKMLGEPDPWSVDQDLAF-SELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEAEL 619 (705)
T ss_pred HHHHHHHHHHHHHHhCCCChhhCCCCCCh-hhcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHHHh
Confidence 456678888999999984 6789999999 89999999999999999999999999999999999999999998775
No 24
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.13 E-value=3.8e-06 Score=86.29 Aligned_cols=79 Identities=22% Similarity=0.356 Sum_probs=73.4
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhC--CccChhhhccCCCHHHHHHHHHHh
Q 032037 66 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFS--VEIPEEKADKLTCCADVARYIASE 143 (148)
Q Consensus 66 ~t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFg--IeIp~~dl~~~~TV~dlv~~I~~~ 143 (148)
....++.+.+.+++++..|++.+.++++.++..|||+||+..+|++..++++|+ .+++++++.+++|++++++|+...
T Consensus 1207 ~~~~~~~~~~l~vvae~tgyp~e~L~ld~d~eaDLgIDSIkrveil~~l~~~~~~~~e~~pe~l~~~rTl~~iv~~~~~~ 1286 (2582)
T TIGR02813 1207 VNDSAIQQVMMEVVAEKTGYPTEMLELEMDMEADLGIDSIKRVEILGSVQEIINDLPELNPEDLAELRTLGEIVNYMQSK 1286 (2582)
T ss_pred cchhHHHHHHHHHHHhhccCChHhcccccccccccCcchhhhHHhhhhhhhhccCCCCCChhhhcccccHHHHHHhhccc
Confidence 456789999999999999999999999999999999999999999999999998 789999999999999999998654
Q ss_pred h
Q 032037 144 A 144 (148)
Q Consensus 144 ~ 144 (148)
.
T Consensus 1287 ~ 1287 (2582)
T TIGR02813 1287 V 1287 (2582)
T ss_pred c
Confidence 3
No 25
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=98.11 E-value=9.9e-06 Score=78.23 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=70.5
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 032037 67 NPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 144 (148)
Q Consensus 67 t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~ 144 (148)
...++.+.+.+++.+.++.++++++++.+| -++|.|||..++++..|+++||+++|..++.+..|+.+++++|....
T Consensus 845 ~~~~~~~~l~~~~~~vl~~~~~~i~~~~~f-f~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~~ 921 (1389)
T TIGR03443 845 EFTETEREIRDLWLELLPNRPATISPDDSF-FDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRLK 921 (1389)
T ss_pred CCCHHHHHHHHHHHHHhCCCccccCcCcch-hhcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhh
Confidence 345788899999999999988889999999 89999999999999999999999999999999999999999997543
No 26
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=97.91 E-value=3.5e-05 Score=73.60 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=68.7
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 032037 67 NPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 144 (148)
Q Consensus 67 t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~ 144 (148)
...+++..+.+++++.++++ .+..+++| -++|.|||..++++..|++.||+++|..++.+..|++++.++|.+..
T Consensus 975 ~~~~~e~~l~~~~~~~l~~~--~~~~~~~f-f~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~~ 1049 (1296)
T PRK10252 975 PKTGTETIIAAAFSSLLGCD--VVDADADF-FALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAEE 1049 (1296)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CCCCCcCH-HHcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhccc
Confidence 34577889999999999986 68999999 89999999999999999999999999999999999999999998653
No 27
>PRK12467 peptide synthase; Provisional
Probab=97.62 E-value=0.00014 Score=77.32 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHH
Q 032037 67 NPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIAS 142 (148)
Q Consensus 67 t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~ 142 (148)
...++++.+.++++++++++ .|..+.+| -+||.|||..++|+..++++||+++|..++.+..|+.++++++..
T Consensus 3602 p~~~~e~~l~~i~~~vL~~~--~i~~~d~F-f~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467 3602 PRSEVEQQLAAIWADVLGVE--QVGVTDNF-FELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CCCCCcch-hcccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
Confidence 44678899999999999985 58999999 899999999999999999999999999999999999999999975
No 28
>PRK05691 peptide synthase; Validated
Probab=97.55 E-value=0.00022 Score=76.26 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=69.0
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 032037 66 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 144 (148)
Q Consensus 66 ~t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~ 144 (148)
....+++..+.++++++++++ .|.++.+| .+||.|||..++++..++++||+.++..++....|+.++++++..+.
T Consensus 582 ~~~~~~e~~l~~~~~~vL~~~--~i~~~~~f-f~lGgdSL~a~~l~~~l~~~~g~~l~v~~i~~~~ti~~la~~l~~~~ 657 (4334)
T PRK05691 582 ASGDELQARIAAIWCEQLKVE--QVAADDHF-FLLGGNSIAATQVVARLRDELGIDLNLRQLFEAPTLAAFSAAVARQL 657 (4334)
T ss_pred CCcchHHHHHHHHHHHHhCCC--CCCcCCch-hhcccchHHHHHHHHHHHHHhCCcCchhhhhcccchHHHHHHHHHhh
Confidence 344678899999999999984 68999999 89999999999999999999999999999999999999999997654
No 29
>PRK05691 peptide synthase; Validated
Probab=97.49 E-value=0.00031 Score=75.17 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 032037 67 NPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 143 (148)
Q Consensus 67 t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~ 143 (148)
.+.+++.+|.++++++++++ +|..+.+| -++|.|||.++.++.++++.||+++|..++.+..|+.+++++|...
T Consensus 4238 p~~~~e~~l~~iw~~vL~~~--~i~~~d~F-f~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~~ 4311 (4334)
T PRK05691 4238 PRNELEQTLATIWADVLKVE--RVGVHDNF-FELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEGL 4311 (4334)
T ss_pred CCCHHHHHHHHHHHHHhCCC--cCCCCCch-hhcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhhh
Confidence 45788999999999999985 58999999 8899999999999999999999999999999999999999999753
No 30
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=97.48 E-value=0.00026 Score=51.09 Aligned_cols=59 Identities=29% Similarity=0.483 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhhCC----CCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhh
Q 032037 69 DEIMHRVIALVKKFDKT----DAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKA 127 (148)
Q Consensus 69 ~eI~~~I~~il~~~l~v----d~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl 127 (148)
+++.++|.+.+.+..+. ....+++++++..|||++--++.+++.+..++|+|++..=++
T Consensus 2 ~~i~~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~Vd~~~f~~ 64 (111)
T PF07377_consen 2 DDIEQEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNVDLSDFDF 64 (111)
T ss_pred chHHHHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCCCcCccCH
Confidence 47889999999999887 577899999999999999999999999999999999865443
No 31
>PRK12316 peptide synthase; Provisional
Probab=97.46 E-value=0.00032 Score=75.95 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 032037 67 NPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 143 (148)
Q Consensus 67 t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~ 143 (148)
...++..++.++++++++++ .|..+.+| -+||.|||.++.|+..++++||++++..++....|+++++++|...
T Consensus 5069 ~~~~~e~~l~~i~~~vL~~~--~i~~~~~F-f~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~~ 5142 (5163)
T PRK12316 5069 PRSELEQQVAAIWAEVLQLE--RVGLDDNF-FELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLAAFVELAAAA 5142 (5163)
T ss_pred CCcHHHHHHHHHHHHHhCCC--CCCCCCCh-hhccchHHHHHHHHHHHHHHcCCCCCHHHHHcCCCHHHHHHHHHhc
Confidence 34678899999999999875 58999999 8999999999999999999999999999999999999999999754
No 32
>PRK12467 peptide synthase; Provisional
Probab=97.39 E-value=0.00041 Score=73.91 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 032037 67 NPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 143 (148)
Q Consensus 67 t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~ 143 (148)
...+++..+.++++++++++ .|..+.+| -+||.|||..++++..++++||++++..++.+..|+.++++++...
T Consensus 1027 p~~~~e~~l~~i~~~vL~~~--~i~~~d~F-f~lGgdSl~a~~l~~~~~~~~g~~l~~~~lf~~~t~~~la~~~~~~ 1100 (3956)
T PRK12467 1027 PQTELEKRLAAIWADVLKVE--RVGLTDNF-FELGGHSLLATQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAVAAQ 1100 (3956)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CCCCCCCc-hhccCccHHHHHHHHHHHHHhCCCcchHHhhccchHHHHHHHhhhh
Confidence 34578889999999999985 58999999 8999999999999999999999999999999999999999999764
No 33
>PRK12316 peptide synthase; Provisional
Probab=97.22 E-value=0.00071 Score=73.47 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 032037 67 NPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 143 (148)
Q Consensus 67 t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~ 143 (148)
...++++.+.++++++++++ .|..+.+| -+||.|||..++++..++++||++|+..++.+..|+.+++..+...
T Consensus 2513 p~~~~e~~l~~iw~~vL~~~--~i~~~d~F-f~lGgdSl~a~~l~~~~~~~~g~~l~~~~~f~~~ti~~la~~l~~~ 2586 (5163)
T PRK12316 2513 PQEGLEQRLAAIWQAVLKVE--QVGLDDHF-FELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLESG 2586 (5163)
T ss_pred CCCHHHHHHHHHHHHHhCCC--ccCCCCch-hhhcchHHHHHHHHHHHHHHhCCCcCHHHHhhCccHHHHhhhhhhh
Confidence 34678889999999999985 58899999 8999999999999999999999999999999999999999988654
No 34
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.10 E-value=0.0016 Score=44.14 Aligned_cols=68 Identities=10% Similarity=0.165 Sum_probs=57.4
Q ss_pred HHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhhC
Q 032037 76 IALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEAG 145 (148)
Q Consensus 76 ~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~~ 145 (148)
.+.+.+.++.++++++++.+| -+.|+||+-+|.++....+. |.+|...++..-.|++.=-+.+....+
T Consensus 4 r~~~~~Ll~e~~~~l~dqeNL-i~~GLDSiR~M~L~~~wR~~-G~~i~F~~La~~PTl~aW~qLl~~~~~ 71 (74)
T COG3433 4 REQIAELLGESVEELDDQENL-IDYGLDSIRMMALLERWRKR-GADIDFAQLAANPTLAAWWQLLSTRSK 71 (74)
T ss_pred HHHHHHHHcCChhhcCchhhH-HHhchhHHHHHHHHHHHHHc-CCcccHHHHHhCccHHHHHHHHHhccc
Confidence 345556666688899999999 89999999999999999777 999999999999999988877776544
No 35
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=96.98 E-value=0.0004 Score=67.56 Aligned_cols=55 Identities=29% Similarity=0.428 Sum_probs=49.4
Q ss_pred HHHHHHHHhhhCC-CCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhc
Q 032037 73 HRVIALVKKFDKT-DAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKAD 128 (148)
Q Consensus 73 ~~I~~il~~~l~v-d~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~ 128 (148)
-.++.-|+.++|+ |...++.+++| .|||+|||+.+|+-..||.+|++.+...|+.
T Consensus 2007 ~dLiatiA~IlGlrD~~~vn~~asL-aDLGlDSLMsvEikQtLER~~dlVLS~qEiR 2062 (2376)
T KOG1202|consen 2007 RDLIATIAHILGLRDLKAVNDDASL-ADLGLDSLMSVEIKQTLEREFDLVLSAQEIR 2062 (2376)
T ss_pred ccHHHHHHHHhcchhHhhccCCCch-hhccchhhhhHHHHHHHhhhhceeeeHHHHH
Confidence 3467778888998 78899999999 9999999999999999999999999888763
No 36
>PF10501 Ribosomal_L50: Ribosomal subunit 39S; InterPro: IPR018305 This entry represents the L50 protein from the mitochondrial 39S ribosomal subunit. L50 appears to be a secondary RNA-binding protein []. The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units []. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [].; GO: 0005739 mitochondrion
Probab=96.43 E-value=0.025 Score=40.83 Aligned_cols=75 Identities=13% Similarity=0.262 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCCC-CCCCCccccCCCCh-hHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHH
Q 032037 67 NPDEIMHRVIALVKKFDKTDAHKV-TETADFQKDLSLDS-LDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIAS 142 (148)
Q Consensus 67 t~~eI~~~I~~il~~~l~vd~~~I-t~d~~l~~dLGlDS-Ld~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~ 142 (148)
..+++.++|.+..++.++.+.... ..+..+ .+..++. -.-..++.++.+.+|..||+..+..+.|++++++|+..
T Consensus 5 ~~e~l~~~i~e~~~e~~~~~~~~~~~~~~~~-~~~~l~D~~~KF~~lKrl~~~tGh~ipD~~L~~~~T~~dl~~~~~~ 81 (112)
T PF10501_consen 5 PPEDLEEIIEESAKEVLGAEGFGSQSWNNDW-LDISLEDLQLKFAFLKRLQQLTGHRIPDSKLHSIHTVGDLLNFYEK 81 (112)
T ss_pred CHHHHHHHHHHHHHHHhcccccccccCCccc-cccccCCHHHHHHHHHHHHHHHCCCCCcHHHHhcCCHHHHHHHHHH
Confidence 467888999999999888654433 345555 4555544 45678999999999999999999999999999999954
No 37
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=94.88 E-value=0.14 Score=44.03 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHHhhhCCCCC---------CCCCCCCc-cccCCCChhHHHHHHHHHHHHhCCc-cChhh-hccCCC
Q 032037 65 SANPDEIMHRVIALVKKFDKTDAH---------KVTETADF-QKDLSLDSLDRVELVMAFEEEFSVE-IPEEK-ADKLTC 132 (148)
Q Consensus 65 ~~t~~eI~~~I~~il~~~l~vd~~---------~It~d~~l-~~dLGlDSLd~VELv~~LEeeFgIe-Ip~~d-l~~~~T 132 (148)
.++.+.|...+..+|...+.--.. .++.|+.+ ...+|+|||..++|+.++-+.|++. -.-++ +..-.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (386)
T TIGR02372 2 VLDAEAVGRLLVSLIAAEQQEGRVQHHQMPEARLLTADLRIDEETLGLDSLLRLSLVTAVAGFFHLSDTGTEDYLLVRRR 81 (386)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCCCcccCchhhhcccccccccccccccHHHHHHHHHHHHHHhcccccchhhhhhhhcc
Confidence 356788888999998888643222 27778888 4679999999999999999999993 23333 456678
Q ss_pred HHHHHHHHHHhh
Q 032037 133 CADVARYIASEA 144 (148)
Q Consensus 133 V~dlv~~I~~~~ 144 (148)
+++-++.|.+.-
T Consensus 82 ~~~~~~~~~~~~ 93 (386)
T TIGR02372 82 IGEWVDLIAHHS 93 (386)
T ss_pred HHHHHHHHHhcC
Confidence 999999887543
No 38
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=80.39 E-value=3.9 Score=25.47 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=16.5
Q ss_pred CCChhHHHHHHHHHHHHhCCccChh
Q 032037 101 SLDSLDRVELVMAFEEEFSVEIPEE 125 (148)
Q Consensus 101 GlDSLd~VELv~~LEeeFgIeIp~~ 125 (148)
+++++..-.+..+||++||+++.+.
T Consensus 17 dl~~vT~k~vr~~Le~~~~~dL~~~ 41 (54)
T PF08766_consen 17 DLDTVTKKQVREQLEERFGVDLSSR 41 (54)
T ss_dssp -GGG--HHHHHHHHHHH-SS--SHH
T ss_pred CHhHhhHHHHHHHHHHHHCCCcHHH
Confidence 4678888999999999999998753
No 39
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.11 E-value=2.2 Score=41.66 Aligned_cols=54 Identities=24% Similarity=0.146 Sum_probs=47.2
Q ss_pred CCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHH
Q 032037 88 HKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIAS 142 (148)
Q Consensus 88 ~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~ 142 (148)
..++++++| -++|.||+..+-++..+...+.++.|..-..+..|+..+..-+..
T Consensus 614 ~~~s~d~~f-F~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~ 667 (1032)
T KOG1178|consen 614 AIVSPDSSF-FQLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIR 667 (1032)
T ss_pred cccCCCcch-hhhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhh
Confidence 468899999 899999999999999999999999999988888888877655443
No 40
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=62.14 E-value=19 Score=24.00 Aligned_cols=64 Identities=14% Similarity=0.303 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHhhhCCC---CCCCCCCCCccccCCCChhHHHHHHHHHHHHh
Q 032037 54 KQLSRQMCASTSANPDEIMHRVIALVKKFDKTD---AHKVTETADFQKDLSLDSLDRVELVMAFEEEF 118 (148)
Q Consensus 54 ~~~~r~~~~~~~~t~~eI~~~I~~il~~~l~vd---~~~It~d~~l~~dLGlDSLd~VELv~~LEeeF 118 (148)
+.+...+ .....++.++...+.+.|++.-=.| ...|..|..|..-+|-|++.+.++...|...|
T Consensus 9 ~~L~~~l-g~~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~~~~v~~~~~~~ll~~Hl 75 (77)
T smart00151 9 PELAKVL-GAPEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFGKDRMDMFEMNKLLTPHL 75 (77)
T ss_pred HHHHHHh-CCCcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHCcCeecHHHHHHHHHHHc
Confidence 3443333 3466899999999999999663223 34588888887778999999999888887765
No 41
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=62.01 E-value=19 Score=32.95 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhC-CccChhhhccCCCHHHHHHHHHHhhCC
Q 032037 72 MHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFS-VEIPEEKADKLTCCADVARYIASEAGE 146 (148)
Q Consensus 72 ~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFg-IeIp~~dl~~~~TV~dlv~~I~~~~~a 146 (148)
.+.+++++..++.- .-+++.+++| -.-|..|.|.+.|+-++.+-.| .++..+++..-.|+++.++.+..++..
T Consensus 324 ~~~~~~iw~~il~k-v~~v~~~tdf-f~sga~s~dv~rlveeik~~~~g~ele~~~iy~~~t~g~~i~~~ir~lrg 397 (881)
T KOG2452|consen 324 AEAVRSVWQRILPK-VLEVEDSTDF-FKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKLRG 397 (881)
T ss_pred HHHHHHHHHHhcch-heeecccchH-hhcCccchhHHHHHHHHHHhCCcceeccCceEeccchhhHHHHHHHHhcC
Confidence 45677777766542 1357788999 6779999999999999998887 899999998999999999999887754
No 42
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=46.94 E-value=17 Score=23.59 Aligned_cols=46 Identities=13% Similarity=0.325 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHHHhhhC--CCCCCCCCCCCccccCCCChhHHHHHHHHHHHH
Q 032037 66 ANPDEIMHRVIALVKKFDK--TDAHKVTETADFQKDLSLDSLDRVELVMAFEEE 117 (148)
Q Consensus 66 ~t~~eI~~~I~~il~~~l~--vd~~~It~d~~l~~dLGlDSLd~VELv~~LEee 117 (148)
.++++..++|+.++++.-+ +... .+.+.||+++-..-.++..|+++
T Consensus 2 ~~~~~~~~~IL~~L~~~g~~~~ta~------eLa~~lgl~~~~v~r~L~~L~~~ 49 (68)
T smart00550 2 LTQDSLEEKILEFLENSGDETSTAL------QLAKNLGLPKKEVNRVLYSLEKK 49 (68)
T ss_pred CCchHHHHHHHHHHHHCCCCCcCHH------HHHHHHCCCHHHHHHHHHHHHHC
Confidence 3567788889999887643 3332 33388999999999999999887
No 43
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=46.84 E-value=30 Score=22.80 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=20.0
Q ss_pred HHHHHHHhCCccChhhhccCCCHHHHHHHHHH
Q 032037 111 VMAFEEEFSVEIPEEKADKLTCCADVARYIAS 142 (148)
Q Consensus 111 v~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~ 142 (148)
+..+++.||+++|.+ +..|++.++--...
T Consensus 16 l~~l~~~~~~~l~~~---~~~Tl~G~i~~~l~ 44 (81)
T PF03471_consen 16 LDDLNELLGLDLPEE---DYDTLGGLILEQLG 44 (81)
T ss_dssp HHHHHHHHTS-TTTT---TTSBHHHHHHHHHT
T ss_pred HHHHHHHHCcCCCcc---chhhHHHHHHHHcC
Confidence 357889999999985 45588887644433
No 44
>PF00874 PRD: PRD domain; InterPro: IPR011608 Transcriptional antiterminators and activators containing phosphoenolpyruvate: sugar phosphotransferase system (PTS) regulation domains (PRDs) form a class of bacterial regulatory proteins whose activity is modulated by phosphorylation. These regulators stimulate the expression of genes and operons involved in carbohydrate metabolism. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria [, ] and are often characterised by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators, IPR004341 from INTERPRO) or DNA (for activators), and a duplicated PRD module which is phosphorylated on conserved histidines by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations are thought to modify the stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain [, , ]. PRDs are characterised by the presence of a duplicated regulatory module of ~100 residues that can be reversibly phosphorylated on histidyl residues by the PTS. PRDs in transcriptional antiterminators and activators are PTS regulatory targets that are (de)phosphorylated in response to the availability of carbon sources [, , , , ]. The PRD domain comprises one and often two highly conserved histidines. It forms a compact bundle comprising five helices (alpha1-alpha5). The core of the PRD module consists of two pairs of antiparallel helices making an angle of ~60 degrees. The first pair contains the antiparallel helices alpha1 and alpha4, while the second pair contains alpha2 and alpha5. The third helix (alpha3) is oriented perpendicularly to alpha5 at the periphery of the bundle. The helices are connected by loops of varying length [, , ].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1TLV_A 1H99_A 3GWH_A 3UFE_B 3RIO_A 3NUF_A.
Probab=43.13 E-value=25 Score=22.36 Aligned_cols=21 Identities=14% Similarity=0.531 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhCCccChhhh
Q 032037 107 RVELVMAFEEEFSVEIPEEKA 127 (148)
Q Consensus 107 ~VELv~~LEeeFgIeIp~~dl 127 (148)
+-++...+++.||+++|++|+
T Consensus 59 a~~~~~~l~~~~~i~~~~~Ei 79 (89)
T PF00874_consen 59 AKEICERLEKRYGITLPDDEI 79 (89)
T ss_dssp HHHHHHHHHHHHTS-S-HHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHH
Confidence 456778889999999998885
No 45
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=41.59 E-value=4.2 Score=27.15 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=41.9
Q ss_pred hhHHHHHHHhcCCCCChHHHHHHHHHHHHhhhCCC---CCCCCCCCCccccCCCChhHHHHHHHHHHH
Q 032037 52 VLKQLSRQMCASTSANPDEIMHRVIALVKKFDKTD---AHKVTETADFQKDLSLDSLDRVELVMAFEE 116 (148)
Q Consensus 52 ~~~~~~r~~~~~~~~t~~eI~~~I~~il~~~l~vd---~~~It~d~~l~~dLGlDSLd~VELv~~LEe 116 (148)
.++.+.+.+. ....|+.+|...|.+.|++.-=.| ...|..|..|..-+|-|++..-++-..+..
T Consensus 7 ls~~L~~~lg-~~~~sr~~v~~~lw~YIk~~~L~dp~~k~~I~cD~~L~~lf~~~~v~~~~i~~~l~~ 73 (76)
T PF02201_consen 7 LSPELAEFLG-EDELSRSEVVKRLWQYIKENNLQDPKDKRIIICDEKLKKLFGKDSVNFFEIPKLLKP 73 (76)
T ss_dssp HHHHHHHHTT--SCEEHHHHHHHHHHHHHHTTSBESSSTTEEE-TTSHHHHHHTSECSEEETTHHHHH
T ss_pred CCHHHHHHhC-CCCCCHHHHHHHHHHHHHHhcCCCcccCceEecCHHHHHHhCCCeecHhhHHHHHHH
Confidence 3455554333 334899999999999999883333 345888888876677787766555554443
No 46
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=37.63 E-value=7.4 Score=32.34 Aligned_cols=74 Identities=18% Similarity=0.368 Sum_probs=48.3
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCC
Q 032037 55 QLSRQMCASTSANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTC 132 (148)
Q Consensus 55 ~~~r~~~~~~~~t~~eI~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~T 132 (148)
.+.+.+....-++ +++++-|.+|..+|.. +-++-...|.+.-.-|-|+.-+|...||.+|+++||....+++.+
T Consensus 162 dLvqqId~~~~LD-~dVedlLleiADdFV~---sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~iPgf~sd~~~~ 235 (258)
T KOG1142|consen 162 DLVQQIDGTTKLD-DDVEDLLLEIADDFVS---SIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEIPGFSSDEKRS 235 (258)
T ss_pred HHHHhhcCccccc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHhcccCccchhheeeeeeccccccCCCcccccccc
Confidence 3445554444333 3677777776666642 112233444455667778888999999999999999988777763
No 47
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=37.06 E-value=21 Score=27.68 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhhC
Q 032037 72 MHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEAG 145 (148)
Q Consensus 72 ~~~I~~il~~~l~vd~~~It~d~~l~~dLGlDSLd~VELv~~LEeeFgIeIp~~dl~~~~TV~dlv~~I~~~~~ 145 (148)
.+.|.+.+.+.+++++.+.++|-.| |+.-++=+.+.-..=-+-|.++.+.. .|...+.+.|.+..+
T Consensus 93 s~~l~~~l~~~lgi~~gett~DG~f-------tl~~v~ClGaC~~AP~vmind~~~~~-lt~e~l~eil~~~~~ 158 (160)
T COG1905 93 SEALLKALEKKLGIKPGETTADGKF-------TLEPVECLGACGQAPVVMINDDVYGR-LTPEKLEEILEKLKA 158 (160)
T ss_pred hHHHHHHHHHHhCCCCCCcCCCCeE-------EEeeeeeecccccCCEEEECCchhcc-CCHHHHHHHHHHHhc
Confidence 3567778889999999999999999 66666666655555555566665555 677777776665543
No 48
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=30.52 E-value=45 Score=22.33 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=21.8
Q ss_pred cCeeeeeccchhhhhHHHHHHHHhhhhh
Q 032037 7 GGFELICKFNATLNMQNIKETILRYVRV 34 (148)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~r~~~l~~~~~ 34 (148)
=||+.|-|+.--|...++|. ++++++-
T Consensus 32 ~G~~~iRGSs~rgg~~Alr~-~~~~lk~ 58 (74)
T PF04028_consen 32 FGFRTIRGSSSRGGARALRE-MLRALKE 58 (74)
T ss_pred cCCCeEEeCCCCcHHHHHHH-HHHHHHC
Confidence 37888889888888888887 7788773
No 49
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=29.44 E-value=36 Score=23.03 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=11.8
Q ss_pred HHHHHHHHHhCCccChh
Q 032037 109 ELVMAFEEEFSVEIPEE 125 (148)
Q Consensus 109 ELv~~LEeeFgIeIp~~ 125 (148)
+=+.++|+++|+.+|++
T Consensus 5 ~~I~~~E~~lg~~LP~~ 21 (130)
T PF09346_consen 5 EEIQELEEKLGVRLPDD 21 (130)
T ss_dssp HHHHHHHHHHTS---HH
T ss_pred HHHHHHHHHhCCCCcHH
Confidence 45789999999999986
No 50
>smart00860 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.
Probab=27.68 E-value=53 Score=21.45 Aligned_cols=18 Identities=22% Similarity=0.602 Sum_probs=15.3
Q ss_pred HHHHHHHHHhCCccChhh
Q 032037 109 ELVMAFEEEFSVEIPEEK 126 (148)
Q Consensus 109 ELv~~LEeeFgIeIp~~d 126 (148)
+-+.++|+++|+.+|.+=
T Consensus 5 ~~i~~~e~~lg~~LP~~y 22 (129)
T smart00860 5 EEIAELEKKLGIKLPEDY 22 (129)
T ss_pred HHHHHHHHHHCCCCCHHH
Confidence 567889999999999863
No 51
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=27.52 E-value=30 Score=30.63 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=10.1
Q ss_pred hhhhhHHHHHHHHhhh
Q 032037 17 ATLNMQNIKETILRYV 32 (148)
Q Consensus 17 ~~~~~~~~r~~~l~~~ 32 (148)
|.||.|+|| ||..|
T Consensus 131 FEGNAQ~fR--IlT~L 144 (412)
T COG0232 131 FEGNAQTFR--ILTKL 144 (412)
T ss_pred CcccchhhH--HHHHh
Confidence 459999999 44443
No 52
>PRK00157 rplL 50S ribosomal protein L7/L12; Reviewed
Probab=23.86 E-value=73 Score=23.62 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=17.4
Q ss_pred CChhHHHHHHHHHHHHhCCcc
Q 032037 102 LDSLDRVELVMAFEEEFSVEI 122 (148)
Q Consensus 102 lDSLd~VELv~~LEeeFgIeI 122 (148)
|.=+...||+..||++|||.-
T Consensus 15 LtllE~~eLv~~lee~fgv~a 35 (123)
T PRK00157 15 MTVLELSELVKALEEKFGVSA 35 (123)
T ss_pred CCHHHHHHHHHHHHHHcCCCc
Confidence 444678899999999999974
No 53
>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A.
Probab=23.43 E-value=63 Score=21.92 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=11.4
Q ss_pred HHHHHHHHHhCCccChh
Q 032037 109 ELVMAFEEEFSVEIPEE 125 (148)
Q Consensus 109 ELv~~LEeeFgIeIp~~ 125 (148)
+-+..+|+++|+.+|.+
T Consensus 2 e~I~~~E~~Lg~~lP~~ 18 (120)
T PF14568_consen 2 EEIEEAEKKLGVKLPED 18 (120)
T ss_dssp HHHHHHHHHHTS---HH
T ss_pred hHHHHHHHHhCCCCCHH
Confidence 34778999999999975
No 54
>TIGR00855 L12 ribosomal protein L7/L12. THis model resembles Pfam model pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus.
Probab=22.58 E-value=78 Score=23.56 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=17.9
Q ss_pred CCChhHHHHHHHHHHHHhCCcc
Q 032037 101 SLDSLDRVELVMAFEEEFSVEI 122 (148)
Q Consensus 101 GlDSLd~VELv~~LEeeFgIeI 122 (148)
++.=+...||+..||++|||.-
T Consensus 15 ~LTllE~~eLv~~lee~fgV~a 36 (126)
T TIGR00855 15 EMTVLELSELVKALEEKFGVSA 36 (126)
T ss_pred hCCHHHHHHHHHHHHHhcCCCc
Confidence 3445778899999999999974
No 55
>PF06720 Phi-29_GP16_7: Bacteriophage phi-29 early protein GP16.7; InterPro: IPR009595 The early-expressed gene 16.7 is conserved in bacteriophage phi-29 and related phages. It encodes a membrane protein, GP16.7, consisting of an N-terminal transmembrane domain and a C-terminal DNA-binding and dimerisation domain. GP16.7 plays an important role in organising membrane-associated bacteriophage DNA replication [, ]. The C-terminal domain has a similar secondary structure similar to homeodomains, but forms a fundamentally different tertiary structure consisting of a six-helical dimeric fold []. Multimerisation of this dimer leads to efficient DNA binding.; PDB: 2C5R_B 2BNK_A 1ZAE_B.
Probab=22.50 E-value=1.5e+02 Score=21.95 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=19.9
Q ss_pred HHHHHhCCccChhh-----hccCCCHHHHHHHHHHhh
Q 032037 113 AFEEEFSVEIPEEK-----ADKLTCCADVARYIASEA 144 (148)
Q Consensus 113 ~LEeeFgIeIp~~d-----l~~~~TV~dlv~~I~~~~ 144 (148)
.+=++=||.||.+- ..++.|-+++.+||+.+.
T Consensus 77 DlYe~SnIrIP~DIIEdl~~~~L~Te~eVmnYiEnqR 113 (130)
T PF06720_consen 77 DLYEQSNIRIPSDIIEDLVNQRLQTEQEVMNYIENQR 113 (130)
T ss_dssp HHHHHTT----HHHHHHHHTT--SSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHhhH
Confidence 44566799999864 377899999999999764
No 56
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=21.63 E-value=94 Score=21.79 Aligned_cols=28 Identities=14% Similarity=0.382 Sum_probs=22.6
Q ss_pred CCCChHHHHHHHHHHHHhhhCCCCCCCC
Q 032037 64 TSANPDEIMHRVIALVKKFDKTDAHKVT 91 (148)
Q Consensus 64 ~~~t~~eI~~~I~~il~~~l~vd~~~It 91 (148)
++---+++.+.|.++|+++..++++.+.
T Consensus 35 ~pd~l~~Lr~eIl~VI~KYV~id~d~v~ 62 (88)
T COG0851 35 QPDYLEQLRKEILEVISKYVQIDPDKVE 62 (88)
T ss_pred CcchHHHHHHHHHHHHHHHheeCcccEE
Confidence 3444578889999999999999988765
No 57
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=20.98 E-value=3.2e+02 Score=19.41 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhhCCC---------CCCCCCCCCc----cccCCCChhHHHHHHHHHHHHhCCccChh
Q 032037 71 IMHRVIALVKKFDKTD---------AHKVTETADF----QKDLSLDSLDRVELVMAFEEEFSVEIPEE 125 (148)
Q Consensus 71 I~~~I~~il~~~l~vd---------~~~It~d~~l----~~dLGlDSLd~VELv~~LEeeFgIeIp~~ 125 (148)
+..++...+++..|+. ..+-+|++++ .-.-|..-++.+++...|++-||+.++--
T Consensus 10 ~lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDILVef~~~~~ll~~~~l~~~L~~llg~~VDL~ 77 (97)
T COG1669 10 ILRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDILVEFEPGKTLLDLVRLEDELSDLLGRKVDLV 77 (97)
T ss_pred HHHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeEEeecCCccHHHHHHHHHHHHHHhCCeeeee
Confidence 3555666666554431 2344555554 12457899999999999999999988643
No 58
>PF03776 MinE: Septum formation topological specificity factor MinE; InterPro: IPR005527 Cytokinesis needs to be regulated spatially in order to ensure that it occurs between the daughter genomes. In prokaryotes such as Escherichia coli, cytokinesis is initiated by FtsZ, a tubulin-like protein that assembles into a ring structure at the cell centre called the Z ring. A fundamental problem in prokaryotic cell biology is to understand how the midcell division site is identified. Two major negative regulatory systems are known to be involved in preventing Z-ring assembly at all sites except the midcell. One of these systems, called nucleoid occlusion, blocks Z-ring assembly in the area occupied by an unsegregated nucleoid until a critical stage in chromosome replication or segregation is reached. The other system consists of three proteins, MinC, MinD and MinE, which prevent assembly of Z rings in regions of the cell not covered by the nucleoid, such as the cell poles. MinC is an inhibitor of FtsZ polymerisation, resulting in the inhibition of Z ring assembly in the cell; MinD greatly enhances the inhibitory effects of MinC in vivo; and MinE antagonizes the effects of MinC and MinD []. MinE is a small bifunctional protein. The amino terminus of MinE is required to interact with MinD, while the carboxyl terminus is required for `topological specificity' - that is, the ability of MinE to antagonise MinCD inhibition of Z rings at the midcell position but not at the poles.; GO: 0032955 regulation of barrier septum formation, 0051301 cell division; PDB: 2KXO_A 3MCD_B 3KU7_A 3R9J_C 3R9I_E 1EV0_B.
Probab=20.94 E-value=58 Score=21.42 Aligned_cols=26 Identities=12% Similarity=0.368 Sum_probs=19.1
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCCCC
Q 032037 66 ANPDEIMHRVIALVKKFDKTDAHKVT 91 (148)
Q Consensus 66 ~t~~eI~~~I~~il~~~l~vd~~~It 91 (148)
-.-+.+.+.|+++++++..++++.++
T Consensus 25 ~~l~~lk~eil~viskYv~i~~~~v~ 50 (70)
T PF03776_consen 25 DYLEQLKKEILEVISKYVEIDEEDVE 50 (70)
T ss_dssp SSHHHHHHHHHHHHHHHS---CCCEE
T ss_pred HHHHHHHHHHHHHHHhheecCcccEE
Confidence 46678999999999999998877654
No 59
>COG0222 RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]
Probab=20.52 E-value=92 Score=23.18 Aligned_cols=18 Identities=50% Similarity=0.663 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHhCCcc
Q 032037 105 LDRVELVMAFEEEFSVEI 122 (148)
Q Consensus 105 Ld~VELv~~LEeeFgIeI 122 (148)
|.+.+|+.++|+.||+.=
T Consensus 18 lel~eLvk~~eekfgVsa 35 (124)
T COG0222 18 LELSELVKALEEKFGVTA 35 (124)
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 567899999999999963
No 60
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=20.19 E-value=63 Score=21.98 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCC
Q 032037 68 PDEIMHRVIALVKKFDKTDAHKVT 91 (148)
Q Consensus 68 ~~eI~~~I~~il~~~l~vd~~~It 91 (148)
-+.+.+.|+++|+++..+++++++
T Consensus 38 l~~mk~dil~VIskY~~id~~~v~ 61 (81)
T TIGR01215 38 LEELRKEILEVISKYVEIDPEMVE 61 (81)
T ss_pred HHHHHHHHHHHHHHheecchHhEE
Confidence 368889999999999999887664
Done!