Query 032038
Match_columns 148
No_of_seqs 152 out of 1117
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 08:45:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 2E-57 4.3E-62 315.6 15.7 148 1-148 1-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 2.3E-55 4.9E-60 311.4 17.3 146 2-147 6-152 (153)
3 PLN00172 ubiquitin conjugating 100.0 6.2E-53 1.4E-57 300.2 18.5 147 1-147 1-147 (147)
4 PTZ00390 ubiquitin-conjugating 100.0 1.8E-52 4E-57 299.1 18.5 147 2-148 3-149 (152)
5 KOG0419 Ubiquitin-protein liga 100.0 2.6E-52 5.6E-57 283.0 14.9 144 2-145 5-148 (152)
6 KOG0418 Ubiquitin-protein liga 100.0 3.6E-47 7.9E-52 272.1 14.6 147 2-148 4-154 (200)
7 KOG0425 Ubiquitin-protein liga 100.0 2.3E-46 4.9E-51 260.9 15.7 143 3-145 7-163 (171)
8 KOG0424 Ubiquitin-protein liga 100.0 1.6E-45 3.5E-50 253.2 15.1 147 2-148 5-158 (158)
9 cd00195 UBCc Ubiquitin-conjuga 100.0 2.9E-45 6.4E-50 259.3 16.3 139 4-142 2-141 (141)
10 PF00179 UQ_con: Ubiquitin-con 100.0 1.8E-45 4E-50 260.0 15.1 138 5-142 1-140 (140)
11 smart00212 UBCc Ubiquitin-conj 100.0 2E-44 4.3E-49 256.1 17.3 143 4-146 1-145 (145)
12 KOG0426 Ubiquitin-protein liga 100.0 2.3E-44 4.9E-49 244.5 14.1 145 1-145 4-162 (165)
13 KOG0421 Ubiquitin-protein liga 100.0 1.1E-44 2.4E-49 249.2 12.0 142 3-145 31-172 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 1.3E-40 2.8E-45 227.9 14.2 146 1-147 2-149 (153)
15 KOG0420 Ubiquitin-protein liga 100.0 1.2E-38 2.5E-43 225.4 12.1 145 2-147 29-175 (184)
16 KOG0416 Ubiquitin-protein liga 100.0 1.6E-38 3.4E-43 224.3 11.8 143 2-147 4-148 (189)
17 KOG0423 Ubiquitin-protein liga 100.0 2E-38 4.2E-43 224.5 8.2 146 3-148 12-157 (223)
18 KOG0427 Ubiquitin conjugating 100.0 4.9E-33 1.1E-37 188.9 11.6 117 2-119 16-134 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 2E-29 4.3E-34 184.3 15.2 112 2-115 6-120 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 2.2E-26 4.8E-31 168.9 13.9 139 5-144 23-167 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 2.3E-23 5E-28 155.3 9.5 110 2-114 12-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 9.8E-18 2.1E-22 145.4 7.6 109 4-112 854-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 1.4E-15 3.1E-20 132.2 10.6 111 3-113 284-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 1.1E-14 2.3E-19 99.9 8.1 109 4-112 8-123 (138)
25 KOG0897 Predicted ubiquitin-co 98.9 2.5E-09 5.4E-14 71.6 6.0 93 49-142 12-110 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.9 9.4E-09 2E-13 71.9 7.3 67 46-112 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.6 8.7E-08 1.9E-12 66.1 5.9 78 30-112 32-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.4 2E-07 4.2E-12 65.0 3.3 95 3-103 26-135 (161)
29 KOG3357 Uncharacterized conser 97.8 4.7E-05 1E-09 52.5 4.8 94 3-102 29-137 (167)
30 KOG2391 Vacuolar sorting prote 97.8 0.00026 5.7E-09 56.1 9.4 81 29-114 51-139 (365)
31 PF14462 Prok-E2_E: Prokaryoti 96.9 0.012 2.7E-07 40.4 8.8 89 20-111 13-120 (122)
32 PF05773 RWD: RWD domain; Int 96.9 0.0046 9.9E-08 41.0 6.2 69 4-73 4-74 (113)
33 smart00591 RWD domain in RING 96.5 0.042 9.2E-07 36.0 8.8 27 46-72 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.8 0.1 2.2E-06 37.7 8.3 62 51-112 56-126 (162)
35 PF09765 WD-3: WD-repeat regio 92.3 0.26 5.5E-06 39.0 4.6 85 4-111 102-187 (291)
36 KOG0309 Conserved WD40 repeat- 88.3 2.4 5.3E-05 37.7 7.3 67 5-72 424-491 (1081)
37 KOG4018 Uncharacterized conser 85.8 2.3 4.9E-05 32.0 5.2 61 7-69 8-70 (215)
38 PF06113 BRE: Brain and reprod 75.7 11 0.00023 30.5 6.0 68 30-109 53-123 (333)
39 PF14460 Prok-E2_D: Prokaryoti 75.6 4.3 9.3E-05 29.5 3.6 40 71-113 90-133 (175)
40 TIGR03737 PRTRC_B PRTRC system 73.2 6.5 0.00014 30.0 4.1 39 71-113 131-173 (228)
41 smart00340 HALZ homeobox assoc 59.6 8.3 0.00018 21.4 1.7 14 3-16 21-34 (44)
42 cd00421 intradiol_dioxygenase 56.1 19 0.00042 25.2 3.7 25 46-70 64-89 (146)
43 cd07981 TAF12 TATA Binding Pro 54.7 45 0.00098 20.4 4.8 43 105-147 6-48 (72)
44 cd03457 intradiol_dioxygenase_ 53.9 22 0.00047 26.3 3.7 25 46-70 85-109 (188)
45 KOG0177 20S proteasome, regula 52.7 4.1 8.9E-05 30.2 -0.3 32 81-112 135-166 (200)
46 PF06113 BRE: Brain and reprod 51.1 42 0.00091 27.2 5.1 28 47-75 305-332 (333)
47 PF03847 TFIID_20kDa: Transcri 48.5 58 0.0013 19.9 4.5 43 105-147 4-46 (68)
48 PF14135 DUF4302: Domain of un 47.4 67 0.0015 24.3 5.7 69 2-81 10-102 (235)
49 cd03459 3,4-PCD Protocatechuat 46.2 35 0.00075 24.4 3.7 25 46-70 71-100 (158)
50 KOG4445 Uncharacterized conser 45.0 29 0.00062 27.8 3.3 25 48-72 45-69 (368)
51 KOG0662 Cyclin-dependent kinas 45.0 25 0.00054 26.5 2.8 55 62-116 167-225 (292)
52 cd05845 Ig2_L1-CAM_like Second 44.1 59 0.0013 21.1 4.3 26 45-72 16-41 (95)
53 COG0544 Tig FKBP-type peptidyl 41.1 70 0.0015 26.9 5.2 13 50-62 211-223 (441)
54 KOG3285 Spindle assembly check 35.9 66 0.0014 23.8 3.8 40 3-42 121-160 (203)
55 TIGR02423 protocat_alph protoc 35.8 57 0.0012 24.2 3.6 25 46-70 95-124 (193)
56 PF13950 Epimerase_Csub: UDP-g 35.2 45 0.00098 19.8 2.5 20 91-110 36-55 (62)
57 KOG2851 Eukaryotic-type DNA pr 33.7 91 0.002 25.7 4.6 33 77-109 331-369 (412)
58 cd03463 3,4-PCD_alpha Protocat 33.2 68 0.0015 23.6 3.6 25 46-70 91-120 (185)
59 PF12018 DUF3508: Domain of un 32.4 72 0.0016 25.0 3.8 30 117-146 237-266 (281)
60 PF09280 XPC-binding: XPC-bind 32.1 79 0.0017 18.7 3.1 22 118-139 33-54 (59)
61 PF11333 DUF3135: Protein of u 30.6 1.2E+02 0.0026 19.3 4.0 24 122-145 8-31 (83)
62 PF03366 YEATS: YEATS family; 30.1 1.4E+02 0.0029 19.0 4.2 40 31-72 2-41 (84)
63 PRK11700 hypothetical protein; 29.5 2.4E+02 0.0052 21.0 6.8 70 30-105 88-184 (187)
64 PF09606 Med15: ARC105 or Med1 28.6 19 0.00041 32.5 0.0 25 48-72 714-738 (799)
65 PRK15486 hpaC 4-hydroxyphenyla 28.2 31 0.00066 25.0 1.0 69 6-91 6-77 (170)
66 PF12065 DUF3545: Protein of u 26.3 48 0.001 19.8 1.4 12 4-15 37-48 (59)
67 PF09892 DUF2119: Uncharacteri 26.1 2.8E+02 0.0061 20.7 5.8 79 63-146 105-191 (193)
68 PF01175 Urocanase: Urocanase; 25.1 86 0.0019 27.0 3.2 26 121-146 272-297 (546)
69 TIGR02296 HpaC 4-hydroxyphenyl 24.9 32 0.0007 24.3 0.6 30 62-91 36-68 (154)
70 cd01145 TroA_c Periplasmic bin 24.6 1.3E+02 0.0028 22.0 3.9 47 93-145 111-157 (203)
71 PRK05414 urocanate hydratase; 24.3 93 0.002 26.9 3.3 26 121-146 282-307 (556)
72 TIGR01228 hutU urocanate hydra 24.0 95 0.0021 26.7 3.3 26 121-146 273-298 (545)
73 PF09943 DUF2175: Uncharacteri 24.0 79 0.0017 21.0 2.3 21 31-53 1-21 (101)
74 COG2819 Predicted hydrolase of 24.0 1.3E+02 0.0027 23.6 3.8 30 42-71 15-46 (264)
75 KOG4064 Cysteine dioxygenase C 24.0 1.5E+02 0.0032 21.4 3.8 49 93-145 7-60 (196)
76 TIGR02439 catechol_proteo cate 21.9 1.4E+02 0.0029 23.7 3.6 25 46-70 179-221 (285)
77 smart00803 TAF TATA box bindin 21.7 1.9E+02 0.0042 17.3 3.7 29 118-146 19-47 (65)
78 cd01020 TroA_b Metal binding p 21.6 1.9E+02 0.0041 22.1 4.4 48 92-145 97-144 (264)
79 PF00845 Gemini_BL1: Geminivir 21.6 2.3E+02 0.005 22.1 4.7 47 28-74 100-154 (276)
80 COG3866 PelB Pectate lyase [Ca 21.5 1.7E+02 0.0038 23.6 4.1 39 31-70 197-239 (345)
81 PF04314 DUF461: Protein of un 20.8 1.3E+02 0.0027 19.9 2.9 27 32-58 77-103 (110)
82 PF00779 BTK: BTK motif; Inte 20.5 37 0.0008 17.6 0.2 17 73-89 2-19 (32)
83 cd03464 3,4-PCD_beta Protocate 20.5 1.6E+02 0.0034 22.4 3.6 25 46-70 121-152 (220)
84 cd03461 1,2-HQD Hydroxyquinol 20.3 1.5E+02 0.0033 23.3 3.6 25 46-70 171-213 (277)
85 TIGR03615 RutF pyrimidine util 20.0 49 0.0011 23.4 0.8 67 8-91 4-73 (156)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-57 Score=315.63 Aligned_cols=148 Identities=78% Similarity=1.412 Sum_probs=145.9
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
||.+||++|+++|++.+++|+++.++.+|+++|+++|.||.+||||||+|.+.|.||++||++||+|+|.|+||||||+.
T Consensus 1 ~a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 1 MASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+|.||+|+|.++|+|+.+|..||.+|+++|.+||+++|+++++|.+|+.|+.+|.++||+|+++||++
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-55 Score=311.39 Aligned_cols=146 Identities=60% Similarity=1.172 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCC-CcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
|.+||++|+++|++.++.++++.++++ |+++|++.|.||++||||||.|++.|.||++||++||+|+|.++||||||++
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 678999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|+||+++|.+.|+|+++|.+||.+|+++|.+||.++|+|.|||++|++|+++|.++||+++++||.
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
No 3
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=6.2e-53 Score=300.17 Aligned_cols=147 Identities=74% Similarity=1.327 Sum_probs=144.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
||.+||++|+++|++++++++.+.++++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++||||+.
T Consensus 1 ma~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 1 MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred ChHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|.||+++|.++|+|++|+++||.+|+++|.+|++++|+|.+||++|.+|+++|.++|++|+++||.
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999983
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.8e-52 Score=299.06 Aligned_cols=147 Identities=48% Similarity=0.893 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
++|||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
|.||+++|.++|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|+++||++
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999964
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-52 Score=283.02 Aligned_cols=144 Identities=43% Similarity=0.923 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
|-|||++|+++|+++++.|++..|+++|++.|.+.|+||.+|||+||+|++.|.|+++||.+||.|+|.+..||||||.+
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~ 84 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD 84 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHh
Q 032038 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 145 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
|.+|+|+|...|+|++++..||.+||+||.+||+++|+|.|||++|++|+.+|.++++..+.+.
T Consensus 85 G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 85 GSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred CcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998864
No 6
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-47 Score=272.09 Aligned_cols=147 Identities=46% Similarity=0.833 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHHhcCC---CCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccc
Q 032038 2 ASKRILKELKDLQKDP---PTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNI 78 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv 78 (148)
|.+|+++|++++.+++ ..|+.++.+++|+.+..+.|.||+|||||||+|.+.|++|++||++||+|+|.|+||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 4799999999999997 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 79 NS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 79 ~~-~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
.+ +|.||+|++.+.|.+++||+.+|++||++|..|++.+|.+.+.|+.|.+|++.|.++||.|+..||+|
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 95 99999999999999999999999999999999999999999999999999999999999999999986
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-46 Score=260.89 Aligned_cols=143 Identities=38% Similarity=0.846 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHhcCCCCCeeEeecCC-CcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCC
Q 032038 3 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
..-|+++|++|++++.+|+.+..+++ |+++|.+.|.||++|.|+||.|+..+.||.+||.+||+++|.+.+||||||++
T Consensus 7 ~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~ 86 (171)
T KOG0425|consen 7 SLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYED 86 (171)
T ss_pred HHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCC
Confidence 46799999999999999999988876 89999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCcc-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHh
Q 032038 82 GSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 145 (148)
Q Consensus 82 G~icl~~l~-------------~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
|.+|+++|- +.|+|..|+++||++|.+||.+||..+|+|.+||+.|++++++|.++++.+|++-
T Consensus 87 G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 87 GDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 999999983 4599999999999999999999999999999999999999999999999998863
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-45 Score=253.23 Aligned_cols=147 Identities=39% Similarity=0.790 Sum_probs=141.9
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecC-----CCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCc
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 76 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hp 76 (148)
|+.||+.|-+.+.++.+-|+++.|+. .|++.|++.|.|+.||+||||.|.+++.||++||.+||+++|.+++|||
T Consensus 5 ~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HP 84 (158)
T KOG0424|consen 5 ALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHP 84 (158)
T ss_pred HHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCC
Confidence 67899999999999999999999886 4799999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeccCccCC--CCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 77 NINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 77 nv~~~G~icl~~l~~~--W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
|||++|.|||++|.+. |+|++||.+||..|++||.+||..+|+|.||...|.+|+.+|.++||.++++||.+
T Consensus 85 NVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 85 NVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred CcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 9999999999999754 99999999999999999999999999999999999999999999999999999974
No 9
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=2.9e-45 Score=259.25 Aligned_cols=139 Identities=59% Similarity=1.142 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCCCc
Q 032038 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~G~ 83 (148)
|||++|++++++.++.|+.+.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCccCC-CCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHH
Q 032038 84 ICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWT 142 (148)
Q Consensus 84 icl~~l~~~-W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 142 (148)
||++++... |+|++++.+||.+|+++|.+|+.++++|.+|+.+|++|+++|.++|+.|+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999876 99999999999999999999999999999999999999999999999874
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.8e-45 Score=259.98 Aligned_cols=138 Identities=57% Similarity=1.140 Sum_probs=129.0
Q ss_pred HHHHHHHHHhcCCCCCeeEeecCC-CcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCCCc
Q 032038 5 RILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~G~ 83 (148)
||++|+++++++++.|+.+.+.++ |+.+|+++|.||++|+|+||.|++.|.||++||++||+|+|.|+|+||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCccC-CCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHH
Q 032038 84 ICLDILKE-QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWT 142 (148)
Q Consensus 84 icl~~l~~-~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 142 (148)
||+++|.. .|+|++++.+||.+|+++|.+|+.++++|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999974 599999999999999999999999999999999999999999999999984
No 11
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2e-44 Score=256.10 Aligned_cols=143 Identities=62% Similarity=1.169 Sum_probs=139.1
Q ss_pred HHHHHHHHHHhcCCCCCeeEeecCC-CcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCCC
Q 032038 4 KRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~G 82 (148)
+||++|++++++.+++|+.+.+.++ |+++|+++|.||++|+|+||.|++.|.||++||.+||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999988875 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCcc-CCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 032038 83 SICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 146 (148)
Q Consensus 83 ~icl~~l~-~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.||++++. ++|+|++++.+||.+|+++|.+|+.++++|.+|+++|++++++|.++|+.++++++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999998 89999999999999999999999999999999999999999999999999999985
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-44 Score=244.55 Aligned_cols=145 Identities=39% Similarity=0.856 Sum_probs=139.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEeecC-CCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcccc
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~ 79 (148)
+|+|||++||++|-.++++|+.+.|.+ +|+++|.+.|.||++|+|+||.|..+++||.+||.+||+++|...+|||||+
T Consensus 4 ~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy 83 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIY 83 (165)
T ss_pred hHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCccc
Confidence 489999999999999999999999886 6899999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCcc-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHh
Q 032038 80 SNGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 145 (148)
Q Consensus 80 ~~G~icl~~l~-------------~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
++|+||+++|- +.|+|.++++.||.++.+||.+||-++.+|.+|+.+|++|+++|.+.|+..++|-
T Consensus 84 ~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKt 162 (165)
T KOG0426|consen 84 PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKT 162 (165)
T ss_pred CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 99999999983 4699999999999999999999999999999999999999999999999998875
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-44 Score=249.23 Aligned_cols=142 Identities=39% Similarity=0.768 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCCC
Q 032038 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~G 82 (148)
.|||++|+-.|+-...+||++.|..||++.|.++|.||.+|+|+|..|++.+.||.+||++||+|+|+|+.||||||..|
T Consensus 31 ~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~G 110 (175)
T KOG0421|consen 31 TKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSG 110 (175)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHh
Q 032038 83 SICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 145 (148)
Q Consensus 83 ~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
.||+|+|.+.|+..++++.||.+||++|-+||..+|+|..||.+|. |.++|++.+.+.-++.
T Consensus 111 nIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 111 NICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999 9999999998876653
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-40 Score=227.94 Aligned_cols=146 Identities=38% Similarity=0.801 Sum_probs=137.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCee-EeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcccc
Q 032038 1 MASKRILKELKDLQKDPPTSCS-AGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~-~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~ 79 (148)
+|.+||.+|+..|++++...+. +...+.|+..|.+.|. |.+.||..|.|.++|.||.+|||+||+|.|.|.|||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4789999999999998776443 4455689999999999 9999999999999999999999999999999999999999
Q ss_pred CCCceeccCc-cCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 80 SNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 80 ~~G~icl~~l-~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+.|.+|+.++ .++|.|++.+.+||+.|.+++.+|+++.|++.|+|..|..|+..|.++|.++++||+.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 9999999988 4899999999999999999999999999999999999999999999999999999984
No 15
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=225.38 Aligned_cols=145 Identities=35% Similarity=0.675 Sum_probs=127.7
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcc--eeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcccc
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMF--HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~--~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~ 79 (148)
|+-||++|..+++--+....++....+++. +.+++|. |+++.|+||.|.|.+.+|+.||++||+|+|+|+||||||+
T Consensus 29 a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId 107 (184)
T KOG0420|consen 29 ALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNID 107 (184)
T ss_pred HHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcC
Confidence 567888888887654433333322234444 5899998 9999999999999999999999999999999999999999
Q ss_pred CCCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 80 SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
.+|.|||++|+++|.|+.+|.+|+..|+++|.+|++++|+|.|||..+++|++.|...||.....++-
T Consensus 108 ~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 108 LDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred CcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999998877653
No 16
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-38 Score=224.33 Aligned_cols=143 Identities=36% Similarity=0.759 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC-
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS- 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~- 80 (148)
+.||+-.|...|..... .+...++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|.++||||||+.
T Consensus 4 ~~rRid~Dv~KL~~s~y---eV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMSDY---EVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhcCC---eEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 45899999988887543 47778889999999999999999999999999999999999999999999999999995
Q ss_pred CCceeccCccCCCCCcCCHHHHHHH-HHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~-l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|.|||+.++..|+|.+++..|+.. |-.||.-||+.+|+|.|||.+|..+++.|++++++++++||+
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999984 566888999999999999999999999999999999999996
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-38 Score=224.51 Aligned_cols=146 Identities=40% Similarity=0.715 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCCC
Q 032038 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~G 82 (148)
+|.|.+|++.+...|++|+.|.+.++|+....+.|.||.||||++|.|+..+.+..+||.+||+-+|+|+||||||-.+|
T Consensus 12 ik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNG 91 (223)
T KOG0423|consen 12 IKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANG 91 (223)
T ss_pred HHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 83 SICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 83 ~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+||.+.|..+|+|+.+|++||..|+.+|..|++++++|.||+++..++.++|.+.||.++.-||++
T Consensus 92 EICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 92 EICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred eehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999863
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-33 Score=188.94 Aligned_cols=117 Identities=38% Similarity=0.791 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecc-cCccccC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINS 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i-~Hpnv~~ 80 (148)
|++||++|+.++|.+|+.|+... +.+|+.+|.+.+.|.+||.|+|..|++.++||+.||++.|+|.|..++ .||+|++
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYS 94 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYS 94 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceec
Confidence 78999999999999999999987 779999999999999999999999999999999999999999999875 6999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCC-CCCCCC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDP-NPDDPL 119 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p-~~~~~~ 119 (148)
||.||+++|.+.|+|++++.+|.++|.+||++- ....|.
T Consensus 95 NGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 95 NGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT 134 (161)
T ss_pred CCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence 999999999999999999999999999999863 333443
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-29 Score=184.30 Aligned_cols=112 Identities=36% Similarity=0.780 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
|.|||++||+.|+++|.+++.+.|..+|+.+||.+|.||++|||+||.|+.+|+||.+||++||-|++.|+ +..+-.+
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktn 83 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTN 83 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999987 4555567
Q ss_pred CceeccCc---cCCCCCcCCHHHHHHHHHHhhcCCCC
Q 032038 82 GSICLDIL---KEQWSPALTISKVLLSICSLLTDPNP 115 (148)
Q Consensus 82 G~icl~~l---~~~W~p~~~l~~il~~l~~ll~~p~~ 115 (148)
-++||++- .+.|+|++++..||..|.++|.+..+
T Consensus 84 tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 84 TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 79999765 58999999999999999999986443
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.2e-26 Score=168.88 Aligned_cols=139 Identities=26% Similarity=0.452 Sum_probs=127.5
Q ss_pred HHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCC--CCCeeEEeecccCccccC-C
Q 032038 5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPF--KPPKVAFRTKVFHPNINS-N 81 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~--~pP~v~f~t~i~Hpnv~~-~ 81 (148)
-|+.|+..+.+.+.+|+++.|+-.|-+.|.++|++ ..+.|.||+|+|+|.+|++||. +.|+|.|.+.++||+|.+ +
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~s 101 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKS 101 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCc
Confidence 57889999999999999999999999999999996 4557999999999999999994 689999999999999995 9
Q ss_pred CceeccCccCCCCCcC-CHHHHHHHHHHhhcCCCCCCC--CcHHHHHHHHHCHHHHHHHHHHHHHH
Q 032038 82 GSICLDILKEQWSPAL-TISKVLLSICSLLTDPNPDDP--LVPEIAHMYKTDRNKYETTARSWTQK 144 (148)
Q Consensus 82 G~icl~~l~~~W~p~~-~l~~il~~l~~ll~~p~~~~~--~n~~a~~~~~~~~~~f~~~~~~~~~~ 144 (148)
+.+|++-....|...- +|+++|..+|..|++|+...+ .|+||+.+|++++++|.++|+++++.
T Consensus 102 keLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 102 KELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred cceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999987777798886 599999999999999987765 59999999999999999999999874
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.3e-23 Score=155.32 Aligned_cols=110 Identities=37% Similarity=0.817 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
|.|||++|-++|+ +|.+.+...|.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+ +..+..+
T Consensus 12 aVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVN 88 (314)
T ss_pred HHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeC
Confidence 6799999999999 788888889999999999999999999999999999999999999999999999987 4555567
Q ss_pred CceeccCc---cCCCCCcCCHHHHHHHHHHhhc-CCC
Q 032038 82 GSICLDIL---KEQWSPALTISKVLLSICSLLT-DPN 114 (148)
Q Consensus 82 G~icl~~l---~~~W~p~~~l~~il~~l~~ll~-~p~ 114 (148)
-.||+++- .+.|.|+++++..|..|..+|- .|+
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 89999886 4889999999999999999885 343
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=9.8e-18 Score=145.40 Aligned_cols=109 Identities=33% Similarity=0.669 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeec--ccCccccCC
Q 032038 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK--VFHPNINSN 81 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~--i~Hpnv~~~ 81 (148)
+..+.|++.|..+.+.|++|...++.+.-..+.|.||.||||..|.|.|.+.||.+||.+||.+...+. .++||.|.+
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 557788999999999999999999988889999999999999999999999999999999999999875 579999999
Q ss_pred CceeccCcc-------CCCCCcCCHHHHHHHHHHhhcC
Q 032038 82 GSICLDILK-------EQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 82 G~icl~~l~-------~~W~p~~~l~~il~~l~~ll~~ 112 (148)
|+||+++|. +.|+|+.++.++|.+||.|+-+
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 999999994 5699999999999999999864
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.4e-15 Score=132.18 Aligned_cols=111 Identities=41% Similarity=0.727 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeec---ccCcccc
Q 032038 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK---VFHPNIN 79 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~---i~Hpnv~ 79 (148)
.+|+++|++.+.+..+.++.+.+.+..+...++.|.||.||||++|.|.|.|.||..||..||.+.+.+. .+.||.|
T Consensus 284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY 363 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY 363 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999877 5799999
Q ss_pred CCCceeccCcc-------CCCCCc-CCHHHHHHHHHHhhcCC
Q 032038 80 SNGSICLDILK-------EQWSPA-LTISKVLLSICSLLTDP 113 (148)
Q Consensus 80 ~~G~icl~~l~-------~~W~p~-~~l~~il~~l~~ll~~p 113 (148)
.+|+||+++|- +.|+|. .+|.++|..||.++.+.
T Consensus 364 n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 364 NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 99999999882 679999 68999999999999754
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.1e-14 Score=99.88 Aligned_cols=109 Identities=28% Similarity=0.508 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCCCCeeEeecCC--C--cceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcccc
Q 032038 4 KRILKELKDLQKDPPTSCSAGPVAE--D--MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~~--~--~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~ 79 (148)
-||.+|+.+=++--.++......++ | +..|.+.|.||+.|+||+.+|.+.|....+||..||+|+|.+++.-+.|+
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn 87 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVN 87 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccc
Confidence 4788888777765444443333332 3 78899999999999999999999999999999999999999999888888
Q ss_pred -CCCceeccCc--cCCCCCcCCHHHHHHHHHHhhcC
Q 032038 80 -SNGSICLDIL--KEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 80 -~~G~icl~~l--~~~W~p~~~l~~il~~l~~ll~~ 112 (148)
.+|.+.-..+ ..+|...+++..+|..++.++..
T Consensus 88 ~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 88 SSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 4888876433 38899999999999999986654
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.5e-09 Score=71.61 Aligned_cols=93 Identities=19% Similarity=0.432 Sum_probs=70.4
Q ss_pred EEEEEEEcCCCCCCCCCeeEEeeccc-CccccCCCceeccCcc-CCCCCcCCHHHHHHHHHHhhcCCC--CCCCCcHHHH
Q 032038 49 VFLVTIHFPPDYPFKPPKVAFRTKVF-HPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPN--PDDPLVPEIA 124 (148)
Q Consensus 49 ~f~~~i~~p~~yP~~pP~v~f~t~i~-Hpnv~~~G~icl~~l~-~~W~p~~~l~~il~~l~~ll~~p~--~~~~~n~~a~ 124 (148)
..-+.+.|+++||+.||.++...++- -.-|-.+|.||+.++. ++|+.+++++.++.++..++.... ...+++.+-.
T Consensus 12 ~ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk 91 (122)
T KOG0897|consen 12 NILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK 91 (122)
T ss_pred eeEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh
Confidence 35678889999999999999886643 3455579999999995 789999999999999999999764 4455555433
Q ss_pred HHH--HHCHHHHHHHHHHHH
Q 032038 125 HMY--KTDRNKYETTARSWT 142 (148)
Q Consensus 125 ~~~--~~~~~~f~~~~~~~~ 142 (148)
+| ..-.+.|+..++...
T Consensus 92 -~~s~~qa~~sfksLv~~he 110 (122)
T KOG0897|consen 92 -LYSHSQAQQSFKSLVQIHE 110 (122)
T ss_pred -HhhHHHHHHHHHHHHHHHH
Confidence 43 345566776666553
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.87 E-value=9.4e-09 Score=71.94 Aligned_cols=67 Identities=33% Similarity=0.780 Sum_probs=61.0
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeEEeecc---cCccccCCCceec---cCccCCCCCcCCHHHHHHHHHHhhcC
Q 032038 46 AGGVFLVTIHFPPDYPFKPPKVAFRTKV---FHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 46 ~gg~f~~~i~~p~~yP~~pP~v~f~t~i---~Hpnv~~~G~icl---~~l~~~W~p~~~l~~il~~l~~ll~~ 112 (148)
.|+.+.+.|.||+.||..||.|....+- +-|||+.+|.+|+ +..-+.|.|.-.+.++|.++..+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999997544 6799999999999 77779999999999999999999984
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.63 E-value=8.7e-08 Score=66.07 Aligned_cols=78 Identities=24% Similarity=0.590 Sum_probs=55.2
Q ss_pred cceeEEEEeCCCCCCCCCCEE--EEEEEcCCCCCCCCCeeEEeecc-----cCccccCCCceeccCccCCCCC-cCCHHH
Q 032038 30 MFHWQATIMGPPDSPYAGGVF--LVTIHFPPDYPFKPPKVAFRTKV-----FHPNINSNGSICLDILKEQWSP-ALTISK 101 (148)
Q Consensus 30 ~~~w~~~i~gp~~t~y~gg~f--~~~i~~p~~yP~~pP~v~f~t~i-----~Hpnv~~~G~icl~~l~~~W~p-~~~l~~ 101 (148)
+....++|. -.|+|..| .+.|-+|++||.+||.+...... -+.+|+++|+|.+..| ++|++ +.+|.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 555555554 24888887 57778999999999999885332 2449999999999888 78988 678999
Q ss_pred HHHHHHHhhcC
Q 032038 102 VLLSICSLLTD 112 (148)
Q Consensus 102 il~~l~~ll~~ 112 (148)
++..|...|.+
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99999998874
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.43 E-value=2e-07 Score=64.98 Aligned_cols=95 Identities=22% Similarity=0.371 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCeeEEeec
Q 032038 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV----------FLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~~p~~yP~~pP~v~f~t~ 72 (148)
..||..||..|-+ +++...++-..|.-.=.-++||.|.|.+ |.+++.+|..||..||.|..-.-
T Consensus 26 ~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 4799999999876 3333333334444333446666666655 67788899999999999987421
Q ss_pred -ccCccccCCCceeccCcc-CCC---CCcCCHHHHH
Q 032038 73 -VFHPNINSNGSICLDILK-EQW---SPALTISKVL 103 (148)
Q Consensus 73 -i~Hpnv~~~G~icl~~l~-~~W---~p~~~l~~il 103 (148)
--....+-+|.||++... .-| .|.++|.+.+
T Consensus 100 dGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 224556679999998774 334 6777877765
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=4.7e-05 Score=52.49 Aligned_cols=94 Identities=21% Similarity=0.364 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCeeEEeec
Q 032038 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV----------FLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~~p~~yP~~pP~v~f~t~ 72 (148)
.+||..||+.|.. +++...++-..|.-.=..++||.|-|.+ |.+++.+|-.||..+|.+....-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 4799999999876 3333444445565444568899888876 66777789999999999875311
Q ss_pred -ccCccccCCCceeccCc-cCCC---CCcCCHHHH
Q 032038 73 -VFHPNINSNGSICLDIL-KEQW---SPALTISKV 102 (148)
Q Consensus 73 -i~Hpnv~~~G~icl~~l-~~~W---~p~~~l~~i 102 (148)
--.-..+.+|.||+.-. ..-| .|..++.+.
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 11234556899999644 3456 455566554
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00026 Score=56.11 Aligned_cols=81 Identities=22% Similarity=0.509 Sum_probs=62.6
Q ss_pred CcceeEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCeeEEeec-----ccCccccCCCceeccCccCCCCCc-CCHH
Q 032038 29 DMFHWQATIMGPPDSPYAGGVFL--VTIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDILKEQWSPA-LTIS 100 (148)
Q Consensus 29 ~~~~w~~~i~gp~~t~y~gg~f~--~~i~~p~~yP~~pP~v~f~t~-----i~Hpnv~~~G~icl~~l~~~W~p~-~~l~ 100 (148)
+++...++|. ++|.|.+|. +.|-+.+.||..||.+..... --|-+|+++|.|.|..| .+|.+. .+|.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLV 125 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHH
Confidence 3555555554 568887765 667799999999999976421 13899999999999999 789766 5699
Q ss_pred HHHHHHHHhhcCCC
Q 032038 101 KVLLSICSLLTDPN 114 (148)
Q Consensus 101 ~il~~l~~ll~~p~ 114 (148)
.+++.|.+.|.++.
T Consensus 126 ~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 126 GLIQELIAAFSEDP 139 (365)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999998653
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.95 E-value=0.012 Score=40.44 Aligned_cols=89 Identities=21% Similarity=0.391 Sum_probs=60.5
Q ss_pred CeeEeecCCCcceeEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCCCce--eccC-------
Q 032038 20 SCSAGPVAEDMFHWQATIMG--PPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI--CLDI------- 88 (148)
Q Consensus 20 ~~~~~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~G~i--cl~~------- 88 (148)
|+..+.+.+.-..|.+ |.| .+.+.|.+..-.+-|.+|..||..+|-+.+..+-.... .+|.+ |-+.
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~ 89 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGR 89 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCe
Confidence 5566666666677766 656 55666999999999999999999998766654322111 12333 3221
Q ss_pred -------ccCCCCCcC-CHHHHHHHHHHhhc
Q 032038 89 -------LKEQWSPAL-TISKVLLSICSLLT 111 (148)
Q Consensus 89 -------l~~~W~p~~-~l~~il~~l~~ll~ 111 (148)
....|.|.. +|.+.|..|...|.
T Consensus 90 ~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 90 TWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 124699988 59999988887764
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.88 E-value=0.0046 Score=41.05 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecc
Q 032038 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG--PPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV 73 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i 73 (148)
.+.+.|+..|+.-=+... ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 467788888888543333 22233455566666632 2344445568999999999999999999877653
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.49 E-value=0.042 Score=36.02 Aligned_cols=27 Identities=15% Similarity=0.408 Sum_probs=22.6
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeEEeec
Q 032038 46 AGGVFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 46 ~gg~f~~~i~~p~~yP~~pP~v~f~t~ 72 (148)
....+.+.+.+|++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999988753
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.78 E-value=0.1 Score=37.75 Aligned_cols=62 Identities=34% Similarity=0.537 Sum_probs=49.2
Q ss_pred EEEEEcCCCCCCCCCeeEEeeccc---CccccCC-----CceeccCcc-CCCCCcCCHHHHHHHHHHhhcC
Q 032038 51 LVTIHFPPDYPFKPPKVAFRTKVF---HPNINSN-----GSICLDILK-EQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 51 ~~~i~~p~~yP~~pP~v~f~t~i~---Hpnv~~~-----G~icl~~l~-~~W~p~~~l~~il~~l~~ll~~ 112 (148)
.+.|.|+.+||..+|.|.+....| +||++.. ..+|+---. ..|.++.++..+|..|...|..
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 356899999999999877765433 5888855 679985432 6799999999999999999863
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=92.32 E-value=0.26 Score=38.97 Aligned_cols=85 Identities=20% Similarity=0.445 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCCCc
Q 032038 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~G~ 83 (148)
++|.+|+.++..+... .+ -.++++...++.+. -+.....++|.+|.+||.++|.+...-++
T Consensus 102 s~ll~EIe~IGW~kl~--~i-~~d~~ls~i~l~~~------D~~R~H~l~l~l~~~yp~~~p~~~~~~P~---------- 162 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLV--QI-QFDDDLSTIKLKIF------DSSRQHYLELKLPSNYPFEPPSCSLDLPI---------- 162 (291)
T ss_dssp -CHHHHHHHHHCGCCE--EE-EE-CCCSEEEEEEE------TTCEEEEEEEETTTTTTTSEEEECS-TTS----------
T ss_pred HHHHHHHHHhccccce--EE-ecCCCccEEEEEEE------cCCceEEEEEEECCCCCCCCceeeCCCCc----------
Confidence 5688888888775432 22 13578888888887 22367889999999999999965322111
Q ss_pred eeccCccCCCCC-cCCHHHHHHHHHHhhc
Q 032038 84 ICLDILKEQWSP-ALTISKVLLSICSLLT 111 (148)
Q Consensus 84 icl~~l~~~W~p-~~~l~~il~~l~~ll~ 111 (148)
.+...|.+ ..++.+++.+.+..+.
T Consensus 163 ----~~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 163 ----PFSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp -----HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred ----chhhhhcccccCHHHHHHHHHHHHH
Confidence 11246888 5678877766665553
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.32 E-value=2.4 Score=37.72 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCC-CCeeEEeec
Q 032038 5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFK-PPKVAFRTK 72 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~-pP~v~f~t~ 72 (148)
-|.+|+.-|-. ..+.+.++-.+-.-....+.+.||--..-.-...++.|.||.+||.+ +|.++|..+
T Consensus 424 nLgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 424 NLGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hHHhHHhHhhc-cccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 35555555443 22334444333445667777777654432223458899999999975 789999643
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=85.80 E-value=2.3 Score=32.04 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCC--CCCCCCCCEEEEEEEcCCCCCCCCCeeEE
Q 032038 7 LKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP--PDSPYAGGVFLVTIHFPPDYPFKPPKVAF 69 (148)
Q Consensus 7 ~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp--~~t~y~gg~f~~~i~~p~~yP~~pP~v~f 69 (148)
.+|+..|...-+.... +..+.+...+.+.|.-- .+.-+.| .+.+.+.++++||..+|-+.+
T Consensus 8 e~E~EaLeSIY~de~~-~i~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 8 EEELEALESIYPDEFK-HINSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred HHHHHHHHHhccchhh-hhhccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 3455556554332221 11223333355555421 1222333 788999999999999999944
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=75.72 E-value=11 Score=30.49 Aligned_cols=68 Identities=25% Similarity=0.496 Sum_probs=46.7
Q ss_pred cceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEe-ecccCccccCCCceeccCccCCCCCcC--CHHHHHHHH
Q 032038 30 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFR-TKVFHPNINSNGSICLDILKEQWSPAL--TISKVLLSI 106 (148)
Q Consensus 30 ~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~-t~i~Hpnv~~~G~icl~~l~~~W~p~~--~l~~il~~l 106 (148)
.....+.| ||.|...+-+|.|...||..||-+.|. ..-|+|... . +..| .+|++.- .+..++..|
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCchHHHHHHHHH
Confidence 44566665 499999999999999999999999996 334777432 1 1222 5787774 355555555
Q ss_pred HHh
Q 032038 107 CSL 109 (148)
Q Consensus 107 ~~l 109 (148)
..+
T Consensus 121 ~~~ 123 (333)
T PF06113_consen 121 RQL 123 (333)
T ss_pred HHH
Confidence 543
No 39
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=75.64 E-value=4.3 Score=29.52 Aligned_cols=40 Identities=25% Similarity=0.427 Sum_probs=23.6
Q ss_pred ecccC---ccccCCCceeccCccCCCCCcCCHHHHHHHHHHhh-cCC
Q 032038 71 TKVFH---PNINSNGSICLDILKEQWSPALTISKVLLSICSLL-TDP 113 (148)
Q Consensus 71 t~i~H---pnv~~~G~icl~~l~~~W~p~~~l~~il~~l~~ll-~~p 113 (148)
|++|| +||+.+|.||+.... .|......-+..+.+.| .++
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 44555 489999999997642 23443344455555444 444
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=73.16 E-value=6.5 Score=30.04 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=26.5
Q ss_pred ecccC---ccccCCCceeccCccCCCCCcC-CHHHHHHHHHHhhcCC
Q 032038 71 TKVFH---PNINSNGSICLDILKEQWSPAL-TISKVLLSICSLLTDP 113 (148)
Q Consensus 71 t~i~H---pnv~~~G~icl~~l~~~W~p~~-~l~~il~~l~~ll~~p 113 (148)
|++|| +||+++|.||+.... .|.. ++.+ +....+.|.+-
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S 173 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSS 173 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCC
Confidence 34565 388899999997653 4544 5666 77777777643
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=59.57 E-value=8.3 Score=21.44 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhcC
Q 032038 3 SKRILKELKDLQKD 16 (148)
Q Consensus 3 ~kRL~~E~~~l~~~ 16 (148)
.+||++|+.+|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999999875
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=56.14 E-value=19 Score=25.20 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=22.5
Q ss_pred CCCEEEEEEEcCCCCC-CCCCeeEEe
Q 032038 46 AGGVFLVTIHFPPDYP-FKPPKVAFR 70 (148)
Q Consensus 46 ~gg~f~~~i~~p~~yP-~~pP~v~f~ 70 (148)
+.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 4588999999999999 999999885
No 43
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=54.66 E-value=45 Score=20.42 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=33.8
Q ss_pred HHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 105 SICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 105 ~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
.|+.++..-++...+.++|...+.+--+.|...+-..+.++|+
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666677889999999999999999888887776663
No 44
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=53.86 E-value=22 Score=26.30 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.7
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeEEe
Q 032038 46 AGGVFLVTIHFPPDYPFKPPKVAFR 70 (148)
Q Consensus 46 ~gg~f~~~i~~p~~yP~~pP~v~f~ 70 (148)
+.|.|.|+=.+|--||..+|.|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 5688999999999999999999885
No 45
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=52.70 E-value=4.1 Score=30.18 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=26.5
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~ 112 (148)
.+.+|++++.+.|+|.+|..+-+.-++.++.+
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~E 166 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVLE 166 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999988887766666543
No 46
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=51.06 E-value=42 Score=27.16 Aligned_cols=28 Identities=32% Similarity=0.714 Sum_probs=22.7
Q ss_pred CCEEEEEEEcCCCCCCCCCeeEEeecccC
Q 032038 47 GGVFLVTIHFPPDYPFKPPKVAFRTKVFH 75 (148)
Q Consensus 47 gg~f~~~i~~p~~yP~~pP~v~f~t~i~H 75 (148)
+=.|-+.+.+|..||...|.++|.+ +||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 3447788889999999999999986 344
No 47
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=48.52 E-value=58 Score=19.89 Aligned_cols=43 Identities=14% Similarity=0.324 Sum_probs=31.0
Q ss_pred HHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 105 SICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 105 ~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
.|+.++..-++...+.+++..+..+=-+.|...+-..+.+.|+
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAK 46 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAK 46 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777778888999999999998889999888887777663
No 48
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=47.40 E-value=67 Score=24.34 Aligned_cols=69 Identities=20% Similarity=0.319 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCC-------------------C-
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY-------------------P- 61 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~y-------------------P- 61 (148)
+..||...++++++. ..+...-|.+... |...---|| |.+.++|.++= -
T Consensus 10 ~~eR~~e~~~~~k~~---------L~~a~~GW~~~yy-p~~~~~~GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~~ 78 (235)
T PF14135_consen 10 PAERINEALAEYKKI---------LTSAPNGWKLEYY-PKTDQSYGG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYRL 78 (235)
T ss_pred HHHHHHHHHHHHHHH---------HhcCCCceEEEEE-CCCCccCCc-EEEEEEECCCCeEEEEEccCCCCceeeEEEEE
Confidence 457888888888772 2233344888887 444321233 88888877553 2
Q ss_pred --CCCCeeEEeec--ccCccccCC
Q 032038 62 --FKPPKVAFRTK--VFHPNINSN 81 (148)
Q Consensus 62 --~~pP~v~f~t~--i~Hpnv~~~ 81 (148)
..-|.+.|.|- +.|-..+++
T Consensus 79 ~~~~gp~LsFdTyN~~iH~~s~p~ 102 (235)
T PF14135_consen 79 KQDQGPVLSFDTYNEYIHYFSDPS 102 (235)
T ss_pred ecCCceEEEEEeCCceEEEccCCC
Confidence 23377777652 567665543
No 49
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=46.15 E-value=35 Score=24.44 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=22.1
Q ss_pred CCCEEEEEEEcCCCCC-----CCCCeeEEe
Q 032038 46 AGGVFLVTIHFPPDYP-----FKPPKVAFR 70 (148)
Q Consensus 46 ~gg~f~~~i~~p~~yP-----~~pP~v~f~ 70 (148)
+.|.|.|.-.+|--|| ..||.|.|.
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 4588999999999999 799999885
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=45.04 E-value=29 Score=27.83 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=22.6
Q ss_pred CEEEEEEEcCCCCCCCCCeeEEeec
Q 032038 48 GVFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 48 g~f~~~i~~p~~yP~~pP~v~f~t~ 72 (148)
.++.+.+..++.||.+-|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5688999999999999999999765
No 51
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=44.98 E-value=25 Score=26.48 Aligned_cols=55 Identities=29% Similarity=0.554 Sum_probs=44.2
Q ss_pred CCCCeeEEeecccCcccc--CCCceeccCccCCC--CCcCCHHHHHHHHHHhhcCCCCC
Q 032038 62 FKPPKVAFRTKVFHPNIN--SNGSICLDILKEQW--SPALTISKVLLSICSLLTDPNPD 116 (148)
Q Consensus 62 ~~pP~v~f~t~i~Hpnv~--~~G~icl~~l~~~W--~p~~~l~~il~~l~~ll~~p~~~ 116 (148)
..||-|.|-.+.|.-.|+ +.|.|--++-..+| .|+-++.+-|..|..++-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 479999999999999998 56766666666666 67888999999999999877543
No 52
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=44.06 E-value=59 Score=21.13 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=21.6
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeeEEeec
Q 032038 45 YAGGVFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 45 y~gg~f~~~i~~p~~yP~~pP~v~f~t~ 72 (148)
-+|..+.|...-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46788899999999999 589988754
No 53
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=41.11 E-value=70 Score=26.89 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=11.6
Q ss_pred EEEEEEcCCCCCC
Q 032038 50 FLVTIHFPPDYPF 62 (148)
Q Consensus 50 f~~~i~~p~~yP~ 62 (148)
..+.++||++|+.
T Consensus 211 k~i~vtFP~dy~a 223 (441)
T COG0544 211 KDIKVTFPEDYHA 223 (441)
T ss_pred eEEEEEcccccch
Confidence 6788999999995
No 54
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.94 E-value=66 Score=23.80 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCC
Q 032038 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPD 42 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~ 42 (148)
.+|+++|++.+.++-...++..|.-+-.-.+.+.+.--.+
T Consensus 121 ~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD 160 (203)
T KOG3285|consen 121 LKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKD 160 (203)
T ss_pred HHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCC
Confidence 6899999999999887788888887777777777764333
No 55
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=35.81 E-value=57 Score=24.18 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.0
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeeEEe
Q 032038 46 AGGVFLVTIHFPPDYPF-----KPPKVAFR 70 (148)
Q Consensus 46 ~gg~f~~~i~~p~~yP~-----~pP~v~f~ 70 (148)
+.|.|.|.-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 45779999999999998 88888764
No 56
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=35.16 E-value=45 Score=19.83 Aligned_cols=20 Identities=10% Similarity=0.371 Sum_probs=12.7
Q ss_pred CCCCCcCCHHHHHHHHHHhh
Q 032038 91 EQWSPALTISKVLLSICSLL 110 (148)
Q Consensus 91 ~~W~p~~~l~~il~~l~~ll 110 (148)
-+|.|.++|.+++...-...
T Consensus 36 LgW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp C----SSSHHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHHH
Confidence 47999999999998766644
No 57
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=33.74 E-value=91 Score=25.66 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=25.7
Q ss_pred ccc-CCCceeccCcc---CCCCCcC--CHHHHHHHHHHh
Q 032038 77 NIN-SNGSICLDILK---EQWSPAL--TISKVLLSICSL 109 (148)
Q Consensus 77 nv~-~~G~icl~~l~---~~W~p~~--~l~~il~~l~~l 109 (148)
.|+ .+|+||.++=- +...|.. +|.+++..|.++
T Consensus 331 cVHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 331 CVHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred cccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 355 49999997652 6677776 799999999888
No 58
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=33.23 E-value=68 Score=23.62 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=20.2
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeeEEe
Q 032038 46 AGGVFLVTIHFPPDYPF-----KPPKVAFR 70 (148)
Q Consensus 46 ~gg~f~~~i~~p~~yP~-----~pP~v~f~ 70 (148)
+.|.|.|.-.+|-.||. .||.|.|.
T Consensus 91 ~~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 91 ADGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34789999999999995 78877664
No 59
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=32.45 E-value=72 Score=24.97 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 032038 117 DPLVPEIAHMYKTDRNKYETTARSWTQKYA 146 (148)
Q Consensus 117 ~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.-.+.+|+..|.++++.|.+.+.+.+++.+
T Consensus 237 ~F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 237 AFSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred EeCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 447889999999999999999999988754
No 60
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=32.14 E-value=79 Score=18.75 Aligned_cols=22 Identities=5% Similarity=0.221 Sum_probs=19.1
Q ss_pred CCcHHHHHHHHHCHHHHHHHHH
Q 032038 118 PLVPEIAHMYKTDRNKYETTAR 139 (148)
Q Consensus 118 ~~n~~a~~~~~~~~~~f~~~~~ 139 (148)
..|++.+.+..+|+++|.+...
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHCHHHHHHHHc
Confidence 4689999999999999998764
No 61
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=30.56 E-value=1.2e+02 Score=19.29 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=19.3
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHh
Q 032038 122 EIAHMYKTDRNKYETTARSWTQKY 145 (148)
Q Consensus 122 ~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
+...++++|+++|.+..++.++..
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee~ 31 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEEM 31 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHH
Confidence 456788999999999888877654
No 62
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=30.07 E-value=1.4e+02 Score=18.99 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=26.8
Q ss_pred ceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeec
Q 032038 31 FHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 31 ~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~ 72 (148)
.+|.+.+.|+.+.....-+=+++..+.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 57999999988865556667788888888776 55555544
No 63
>PRK11700 hypothetical protein; Provisional
Probab=29.51 E-value=2.4e+02 Score=20.96 Aligned_cols=70 Identities=20% Similarity=0.470 Sum_probs=43.7
Q ss_pred cceeEEEE---eCCCCCCC-CCCEEEEEEEcCC--------------CCCCCCCeeEEe--e------cccCcccc-CCC
Q 032038 30 MFHWQATI---MGPPDSPY-AGGVFLVTIHFPP--------------DYPFKPPKVAFR--T------KVFHPNIN-SNG 82 (148)
Q Consensus 30 ~~~w~~~i---~gp~~t~y-~gg~f~~~i~~p~--------------~yP~~pP~v~f~--t------~i~Hpnv~-~~G 82 (148)
+..|.+.. .=|.+..| ..|.=|+++.+|. +.|..++-|++. + +.-+|-|- ++|
T Consensus 88 ~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~ 167 (187)
T PRK11700 88 VGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDG 167 (187)
T ss_pred eCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEeeC
Confidence 45565444 33544444 5677789999883 344555545544 3 25678787 699
Q ss_pred ceeccCccCCCCCcCCHHHHHHH
Q 032038 83 SICLDILKEQWSPALTISKVLLS 105 (148)
Q Consensus 83 ~icl~~l~~~W~p~~~l~~il~~ 105 (148)
.+|+.+. .++|..|+.+
T Consensus 168 ~vcIK~H------P~slk~IV~S 184 (187)
T PRK11700 168 GICIKFH------PHSIKEIVAS 184 (187)
T ss_pred CEEEEEc------CccHHHHHHh
Confidence 9999866 3567777653
No 64
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=28.58 E-value=19 Score=32.54 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=0.0
Q ss_pred CEEEEEEEcCCCCCCCCCeeEEeec
Q 032038 48 GVFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 48 g~f~~~i~~p~~yP~~pP~v~f~t~ 72 (148)
.+=.+.|.+|.+||..+|.+.+.+.
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHH
Confidence 3446889999999999999877544
No 65
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=28.22 E-value=31 Score=25.01 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEe---ecccCccccCCC
Q 032038 6 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFR---TKVFHPNINSNG 82 (148)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~---t~i~Hpnv~~~G 82 (148)
+..++++.+..-..|+.+-...++-.. . |-+-.-...+. .+||.|.+. +..-|+.+..+|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~~~~-~------------G~Tvss~~SvS----ldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGDAGR-C------------GITATAVCSVT----DTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecCCCc-E------------EEEEEEEEEeE----cCCCEEEEEECCCCchhHHHHhCC
Confidence 456788888888888887543222111 1 11111111111 369999884 345688898999
Q ss_pred ceeccCccC
Q 032038 83 SICLDILKE 91 (148)
Q Consensus 83 ~icl~~l~~ 91 (148)
.+|+++|.+
T Consensus 69 ~F~VnvL~~ 77 (170)
T PRK15486 69 KLCINVLNH 77 (170)
T ss_pred eEEEEEChh
Confidence 999999954
No 66
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=26.28 E-value=48 Score=19.82 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhc
Q 032038 4 KRILKELKDLQK 15 (148)
Q Consensus 4 kRL~~E~~~l~~ 15 (148)
+||++||+++.-
T Consensus 37 ~rL~kEL~d~D~ 48 (59)
T PF12065_consen 37 QRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHccc
Confidence 689999988865
No 67
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=26.15 E-value=2.8e+02 Score=20.68 Aligned_cols=79 Identities=14% Similarity=0.300 Sum_probs=44.5
Q ss_pred CCCeeEEeeccc--------CccccCCCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHH
Q 032038 63 KPPKVAFRTKVF--------HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY 134 (148)
Q Consensus 63 ~pP~v~f~t~i~--------Hpnv~~~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f 134 (148)
.||.|-+...+. +-.-.+.-.+|+.+--.+|....+...++.-|.....+.+.++ .-..+....-+=
T Consensus 105 VPplidl~ngVLigSVSP~iR~k~F~k~~~C~TlEvP~~~~~~~~~~~~~iL~~~~~s~~Rde-----~i~kl~~~YP~q 179 (193)
T PF09892_consen 105 VPPLIDLGNGVLIGSVSPIIRRKYFKKEDFCMTLEVPNWKSDESKEEVLEILEIIKESKNRDE-----FIEKLKKKYPEQ 179 (193)
T ss_pred CCCeeeccCCeEEeecCHHHHhcccCccceEEEEEcCCCccHHHHHHHHHHHHHHhcCCCHHH-----HHHHHHHHhhHH
Confidence 577777754432 2221234578987666688877776666666666656665533 222222222223
Q ss_pred HHHHHHHHHHhh
Q 032038 135 ETTARSWTQKYA 146 (148)
Q Consensus 135 ~~~~~~~~~~~a 146 (148)
.++|+..+++|-
T Consensus 180 ~~~A~~~a~~f~ 191 (193)
T PF09892_consen 180 AKKAKEYAKEFY 191 (193)
T ss_pred HHHHHHHHHHhc
Confidence 567777777764
No 68
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=25.09 E-value=86 Score=27.03 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=22.0
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhh
Q 032038 121 PEIAHMYKTDRNKYETTARSWTQKYA 146 (148)
Q Consensus 121 ~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+.++..+|+++|.+.+++..+++.
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rhv 297 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARHV 297 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 46777888999999999999988764
No 69
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=24.91 E-value=32 Score=24.28 Aligned_cols=30 Identities=27% Similarity=0.651 Sum_probs=24.2
Q ss_pred CCCCeeEEe---ecccCccccCCCceeccCccC
Q 032038 62 FKPPKVAFR---TKVFHPNINSNGSICLDILKE 91 (148)
Q Consensus 62 ~~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~ 91 (148)
.+||.|.+. ...-|+.|..+|.+|+++|.+
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~~ 68 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLAH 68 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECcH
Confidence 479999884 345688999999999999953
No 70
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=24.56 E-value=1.3e+02 Score=22.02 Aligned_cols=47 Identities=11% Similarity=0.300 Sum_probs=34.9
Q ss_pred CCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHh
Q 032038 93 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 145 (148)
Q Consensus 93 W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
|.....+..+...|...|..-++.. +..|++|.+.|.++.+.--+++
T Consensus 111 Wldp~~~~~~a~~I~~~L~~~dP~~------~~~y~~N~~~~~~~l~~l~~~~ 157 (203)
T cd01145 111 WLDPNNAPALAKALADALIELDPSE------QEEYKENLRVFLAKLNKLLREW 157 (203)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8777778888999999998765533 4578888888888776655443
No 71
>PRK05414 urocanate hydratase; Provisional
Probab=24.35 E-value=93 Score=26.86 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=22.3
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhh
Q 032038 121 PEIAHMYKTDRNKYETTARSWTQKYA 146 (148)
Q Consensus 121 ~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+..+.++|++.|.+.|++..+++.
T Consensus 282 ee~~~lr~~dp~~~~~~~~~Sm~rhv 307 (556)
T PRK05414 282 EEAAELRAEDPEEFVKAAKASMARHV 307 (556)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 46777889999999999999988764
No 72
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=24.04 E-value=95 Score=26.70 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=22.0
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhh
Q 032038 121 PEIAHMYKTDRNKYETTARSWTQKYA 146 (148)
Q Consensus 121 ~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+.++..+|+++|.+.|++...++.
T Consensus 273 ee~~~lr~~dp~~~~~~~~~Sm~rhv 298 (545)
T TIGR01228 273 EDADKLRQEEPEAYVKAAKQSMAKHV 298 (545)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 46777888999999999999988764
No 73
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=24.01 E-value=79 Score=21.02 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=17.1
Q ss_pred ceeEEEEeCCCCCCCCCCEEEEE
Q 032038 31 FHWQATIMGPPDSPYAGGVFLVT 53 (148)
Q Consensus 31 ~~w~~~i~gp~~t~y~gg~f~~~ 53 (148)
.+|.+.|-| +..|+|-.|.|.
T Consensus 1 ~kWkC~iCg--~~I~~gqlFTF~ 21 (101)
T PF09943_consen 1 KKWKCYICG--KPIYEGQLFTFT 21 (101)
T ss_pred CceEEEecC--CeeeecceEEEe
Confidence 369999987 668999998873
No 74
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=24.01 E-value=1.3e+02 Score=23.63 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=26.4
Q ss_pred CCCCCCCEEEEEEEcCCCCCCCC--CeeEEee
Q 032038 42 DSPYAGGVFLVTIHFPPDYPFKP--PKVAFRT 71 (148)
Q Consensus 42 ~t~y~gg~f~~~i~~p~~yP~~p--P~v~f~t 71 (148)
.+.+.|..|++.+..|.+||-.- |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 45688999999999999999887 9999874
No 75
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=23.98 E-value=1.5e+02 Score=21.44 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=33.7
Q ss_pred CCCcC-CHHHHHHHHHHhhcCCCCCCCCcHHH----HHHHHHCHHHHHHHHHHHHHHh
Q 032038 93 WSPAL-TISKVLLSICSLLTDPNPDDPLVPEI----AHMYKTDRNKYETTARSWTQKY 145 (148)
Q Consensus 93 W~p~~-~l~~il~~l~~ll~~p~~~~~~n~~a----~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
..|.+ ++.+++.+|..+|..... |.|. -..|+.|+.++.+.|+.---+|
T Consensus 7 ~~p~~~sl~dLv~~lh~~F~~~~v----nveeV~~lM~sYkSnp~EWr~yAkFD~y~Y 60 (196)
T KOG4064|consen 7 LKPRMISLVDLVVQLHEIFQQKLV----NVEEVMKLMASYKSNPNEWRRYAKFDMYKY 60 (196)
T ss_pred cCchhhhHHHHHHHHHHHHHhccc----CHHHHHHHHHHhhcCHHHHHHHHhhhHHHH
Confidence 45554 688899999998875432 3332 2358889999998888765444
No 76
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=21.85 E-value=1.4e+02 Score=23.72 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=20.6
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeEEe
Q 032038 46 AGGVFLVTIHFPPDYP------------------FKPPKVAFR 70 (148)
Q Consensus 46 ~gg~f~~~i~~p~~yP------------------~~pP~v~f~ 70 (148)
+.|.|.|.=.+|.-|| ..||.|.|.
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 4578999999999997 568888774
No 77
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=21.69 E-value=1.9e+02 Score=17.27 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 032038 118 PLVPEIAHMYKTDRNKYETTARSWTQKYA 146 (148)
Q Consensus 118 ~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.++.+++..+.++-+.|.+.+-+.+.+|+
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~ 47 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFM 47 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999988888877777765
No 78
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.63 E-value=1.9e+02 Score=22.11 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=35.8
Q ss_pred CCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHh
Q 032038 92 QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 145 (148)
Q Consensus 92 ~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
-|..-.....+...|...|..-++.. +..|++|.++|.++.+...+++
T Consensus 97 ~Wldp~n~~~~a~~I~~~L~~~dP~~------~~~y~~N~~~~~~~l~~l~~~~ 144 (264)
T cd01020 97 LWYDPETMSKVANALADALVKADPDN------KKYYQANAKKFVASLKPLAAKI 144 (264)
T ss_pred eecCHhHHHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 38877888899999999998766533 3477788888888876655444
No 79
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=21.63 E-value=2.3e+02 Score=22.11 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=32.3
Q ss_pred CCcceeEEEEeCCCCCCCCC---CEEEEEEEcC-----CCCCCCCCeeEEeeccc
Q 032038 28 EDMFHWQATIMGPPDSPYAG---GVFLVTIHFP-----PDYPFKPPKVAFRTKVF 74 (148)
Q Consensus 28 ~~~~~w~~~i~gp~~t~y~g---g~f~~~i~~p-----~~yP~~pP~v~f~t~i~ 74 (148)
.|..-|++....-+.-..+| ..|+..+++. .+-||+||+|+.+++-|
T Consensus 100 KDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 100 KDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 45666887777433333333 3366777765 68899999999998855
No 80
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=21.48 E-value=1.7e+02 Score=23.60 Aligned_cols=39 Identities=33% Similarity=0.626 Sum_probs=27.7
Q ss_pred ceeEEEEeCCC-CCCCCCCEEEEEEE---cCCCCCCCCCeeEEe
Q 032038 31 FHWQATIMGPP-DSPYAGGVFLVTIH---FPPDYPFKPPKVAFR 70 (148)
Q Consensus 31 ~~w~~~i~gp~-~t~y~gg~f~~~i~---~p~~yP~~pP~v~f~ 70 (148)
.+|+..|.|-+ ..-|++|.+++++. |-.-+ ...|+|||-
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~-qR~PriRfG 239 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY-QRGPRIRFG 239 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEecccccccc-ccCCceEee
Confidence 46899999944 44888999988876 32333 456699994
No 81
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=20.77 E-value=1.3e+02 Score=19.88 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=21.8
Q ss_pred eeEEEEeCCCCCCCCCCEEEEEEEcCC
Q 032038 32 HWQATIMGPPDSPYAGGVFLVTIHFPP 58 (148)
Q Consensus 32 ~w~~~i~gp~~t~y~gg~f~~~i~~p~ 58 (148)
-.++.|.|+...+=.|..+.++|.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 478899999998999999999999864
No 82
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=20.48 E-value=37 Score=17.62 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=9.6
Q ss_pred ccCccccCCCc-eeccCc
Q 032038 73 VFHPNINSNGS-ICLDIL 89 (148)
Q Consensus 73 i~Hpnv~~~G~-icl~~l 89 (148)
.|||.++.+|+ .|....
T Consensus 2 ~yHPg~~~~g~W~CC~q~ 19 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQT 19 (32)
T ss_dssp EE-SS-EETTCESSSS-S
T ss_pred CcCCCcccCCcCcCCCCc
Confidence 48999997665 666433
No 83
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=20.48 E-value=1.6e+02 Score=22.42 Aligned_cols=25 Identities=24% Similarity=0.627 Sum_probs=21.0
Q ss_pred CCCEEEEEEEcCCCCCC-------CCCeeEEe
Q 032038 46 AGGVFLVTIHFPPDYPF-------KPPKVAFR 70 (148)
Q Consensus 46 ~gg~f~~~i~~p~~yP~-------~pP~v~f~ 70 (148)
+.|.|.|.-..|--||. .||.|.|.
T Consensus 121 ~~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 121 DDGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 45889999999999975 78988874
No 84
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=20.31 E-value=1.5e+02 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.608 Sum_probs=20.9
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeEEe
Q 032038 46 AGGVFLVTIHFPPDYP------------------FKPPKVAFR 70 (148)
Q Consensus 46 ~gg~f~~~i~~p~~yP------------------~~pP~v~f~ 70 (148)
+.|.|.|.-..|.-|| ..||.|.|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 4688999999999999 478888774
No 85
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=20.02 E-value=49 Score=23.41 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEe---ecccCccccCCCce
Q 032038 8 KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFR---TKVFHPNINSNGSI 84 (148)
Q Consensus 8 ~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~---t~i~Hpnv~~~G~i 84 (148)
.++++.+..-..|+.+-...+. +.+ .|-+..-. ..--.+||.+.+. +..-|+.+..+|.+
T Consensus 4 ~~fr~am~~~~~gV~vVT~~~~------------~~~-~g~tvss~----~svS~~PP~v~v~l~~~s~t~~~i~~s~~F 66 (156)
T TIGR03615 4 QAFRDAMSRLGAAVNIITTDGP------------AGR-AGFTASAV----CSVTDTPPTLLVCLNRSASAYPAFKQNGTL 66 (156)
T ss_pred HHHHHHHhccCCCeEEEEeecC------------CCc-eeEEEEeE----eeccCCCCEEEEEeCCCcchhHHHHhCCeE
Confidence 4677777777777776543211 111 11111111 1123579999884 34568889899999
Q ss_pred eccCccC
Q 032038 85 CLDILKE 91 (148)
Q Consensus 85 cl~~l~~ 91 (148)
++++|..
T Consensus 67 ~VnvL~~ 73 (156)
T TIGR03615 67 CVNTLAA 73 (156)
T ss_pred EEEECcH
Confidence 9999953
Done!