Query 032038
Match_columns 148
No_of_seqs 152 out of 1117
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 14:01:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 2.2E-54 7.7E-59 308.1 19.1 148 1-148 4-151 (151)
2 2c2v_B Ubiquitin-conjugating e 100.0 7.7E-54 2.6E-58 306.2 16.7 147 2-148 6-152 (154)
3 1z2u_A Ubiquitin-conjugating e 100.0 1.6E-53 5.4E-58 303.5 18.1 147 1-147 4-150 (150)
4 2r0j_A Ubiquitin carrier prote 100.0 1.4E-53 4.9E-58 303.4 17.7 147 2-148 2-148 (149)
5 1fxt_A Ubiquitin-conjugating e 100.0 6.4E-54 2.2E-58 305.2 15.7 147 1-147 1-149 (149)
6 2ayv_A Ubiquitin-conjugating e 100.0 3.8E-53 1.3E-57 305.8 19.7 146 1-146 21-166 (166)
7 2c4o_A Ubiquitin-conjugating e 100.0 4.3E-53 1.5E-57 305.3 19.2 147 1-147 19-165 (165)
8 1zdn_A Ubiquitin-conjugating e 100.0 5.7E-53 1.9E-57 302.9 17.4 145 2-146 14-158 (158)
9 1ayz_A UBC2, ubiquitin-conjuga 100.0 9.6E-53 3.3E-57 304.5 18.7 146 2-147 5-150 (169)
10 2aak_A UBC1, ubiquitin conjuga 100.0 1.4E-52 4.8E-57 299.2 19.1 146 2-147 5-150 (152)
11 1jat_A Ubiquitin-conjugating e 100.0 3.5E-53 1.2E-57 303.1 15.4 148 1-148 5-152 (155)
12 3h8k_A Ubiquitin-conjugating e 100.0 4.3E-52 1.5E-56 300.0 20.0 147 2-148 4-164 (164)
13 1yh2_A HSPC150 protein similar 100.0 4E-52 1.4E-56 301.4 19.8 147 2-148 5-155 (169)
14 2bep_A Ubiquitin-conjugating e 100.0 3.3E-52 1.1E-56 299.2 19.0 147 2-148 9-159 (159)
15 3rcz_B SUMO-conjugating enzyme 100.0 4.5E-52 1.6E-56 299.4 18.3 146 2-147 11-163 (163)
16 2e2c_A Ubiquitin conjugating e 100.0 5.4E-52 1.9E-56 297.3 18.3 145 2-147 10-154 (156)
17 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1E-51 3.4E-56 304.4 18.6 147 1-147 32-192 (193)
18 3bzh_A Ubiquitin-conjugating e 100.0 1.6E-51 5.6E-56 303.6 19.6 146 2-147 49-194 (194)
19 2ucz_A UBC7, ubiquitin conjuga 100.0 1.3E-51 4.5E-56 297.7 18.6 146 2-147 5-164 (165)
20 2gjd_A Ubiquitin-conjugating e 100.0 1E-51 3.5E-56 296.1 17.2 146 2-147 5-157 (157)
21 3k9o_A Ubiquitin-conjugating e 100.0 2.1E-51 7.3E-56 305.0 19.3 148 1-148 5-156 (201)
22 2pwq_A Ubiquitin conjugating e 100.0 9.4E-52 3.2E-56 309.1 17.5 147 2-148 24-171 (216)
23 2grr_A Ubiquitin-conjugating e 100.0 2.3E-51 7.9E-56 295.3 17.6 147 2-148 8-161 (161)
24 1wzv_A Ubiquitin-conjugating e 100.0 2.5E-51 8.6E-56 293.5 17.0 146 1-147 4-151 (155)
25 1i7k_A Ubiquitin-conjugating e 100.0 2.4E-51 8.3E-56 299.3 16.5 147 1-148 30-176 (179)
26 1tte_A Ubiquitin-conjugating e 100.0 3.6E-51 1.2E-55 305.8 14.0 148 1-148 2-151 (215)
27 3fn1_B NEDD8-conjugating enzym 100.0 5.4E-50 1.9E-54 289.8 18.3 145 2-147 15-167 (167)
28 3e46_A Ubiquitin-conjugating e 100.0 5.4E-50 1.8E-54 305.6 19.1 147 2-148 58-208 (253)
29 2onu_A Ubiquitin-conjugating e 100.0 1.9E-50 6.5E-55 288.0 12.2 144 2-148 3-148 (152)
30 3rz3_A Ubiquitin-conjugating e 100.0 2.6E-49 9E-54 289.8 18.1 146 2-147 8-173 (183)
31 1yrv_A Ubiquitin-conjugating l 100.0 1.2E-49 4.1E-54 288.1 15.5 142 2-144 24-168 (169)
32 1c4z_D UBCH7, ubiquitin conjug 100.0 2.7E-50 9.2E-55 287.9 11.6 147 1-148 2-150 (154)
33 2awf_A Ubiquitin-conjugating e 100.0 1.9E-49 6.5E-54 288.0 15.0 141 1-141 17-172 (172)
34 2z5d_A Ubiquitin-conjugating e 100.0 1.9E-49 6.4E-54 289.1 13.4 142 2-147 26-169 (179)
35 2y9m_A Ubiquitin-conjugating e 100.0 2E-48 7E-53 282.6 17.9 146 2-147 7-168 (172)
36 1y8x_A Ubiquitin-conjugating e 100.0 1.6E-48 5.4E-53 280.2 17.1 140 2-144 7-147 (160)
37 4ddg_A Ubiquitin-conjugating e 100.0 2E-48 6.8E-53 314.5 18.3 148 1-148 3-150 (399)
38 2nvu_C NEDD8-conjugating enzym 100.0 6E-48 2.1E-52 281.8 16.7 140 2-144 27-167 (180)
39 1yf9_A Ubiquitin carrier prote 100.0 4.7E-48 1.6E-52 280.3 14.6 142 2-147 13-156 (171)
40 3o2u_A NEDD8-conjugating enzym 100.0 4.7E-47 1.6E-51 279.2 15.6 141 2-145 30-177 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 1.6E-45 5.4E-50 266.3 13.5 138 2-139 9-163 (167)
42 2q0v_A Ubiquitin-conjugating e 100.0 7.2E-44 2.4E-48 254.8 10.7 128 2-130 22-156 (156)
43 3ceg_A Baculoviral IAP repeat- 100.0 3.4E-43 1.2E-47 275.1 14.8 146 2-147 77-243 (323)
44 2fo3_A Ubiquitin-conjugating e 100.0 5.2E-43 1.8E-47 242.3 13.5 115 2-116 7-122 (125)
45 2h2y_A Ubiquitin-conjugating e 100.0 4.1E-42 1.4E-46 240.8 15.0 114 2-115 21-135 (136)
46 2a4d_A Ubiquitin-conjugating e 100.0 4.6E-42 1.6E-46 246.1 13.3 123 2-124 26-156 (160)
47 1jat_B Ubiquitin-conjugating e 100.0 5.5E-43 1.9E-47 245.9 7.3 125 2-127 7-138 (138)
48 2a7l_A Hypothetical ubiquitin- 100.0 7.7E-41 2.6E-45 234.2 12.8 109 3-111 24-136 (136)
49 2hlw_A Ubiquitin-conjugating e 100.0 1.8E-41 6.1E-46 245.4 9.8 123 2-124 36-166 (170)
50 2f4w_A Ubiquitin-conjugating e 100.0 2.3E-39 8E-44 237.6 15.9 135 1-137 14-154 (187)
51 1zuo_A Hypothetical protein LO 100.0 3.5E-40 1.2E-44 241.7 3.6 137 2-146 28-181 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 2.5E-29 8.5E-34 178.5 2.6 96 3-104 34-144 (172)
53 3r3q_A Suppressor protein STP2 99.8 5.8E-21 2E-25 136.4 9.5 113 4-117 31-161 (162)
54 3kpa_A Probable ubiquitin fold 99.8 4.8E-21 1.7E-25 133.2 0.4 95 3-103 36-145 (168)
55 3obq_A Tumor susceptibility ge 99.6 2E-15 6.9E-20 106.0 6.9 101 6-112 25-138 (146)
56 2ebm_A RWD domain-containing p 97.0 0.0079 2.7E-07 40.3 9.8 66 4-71 13-78 (128)
57 2day_A Ring finger protein 25; 96.4 0.029 1E-06 37.4 8.8 68 5-72 12-83 (128)
58 2yz0_A Serine/threonine-protei 96.2 0.047 1.6E-06 36.9 9.2 66 5-71 14-85 (138)
59 3zqs_A E3 ubiquitin-protein li 95.8 0.17 5.8E-06 36.3 10.6 84 4-111 4-87 (186)
60 2ebk_A RWD domain-containing p 95.7 0.099 3.4E-06 34.8 8.7 65 5-70 11-78 (128)
61 2daw_A RWD domain containing p 95.5 0.098 3.3E-06 36.3 8.4 23 49-71 76-98 (154)
62 1ukx_A GCN2, GCN2 EIF2alpha ki 94.2 0.3 1E-05 32.7 7.8 67 4-71 13-86 (137)
63 2dax_A Protein C21ORF6; RWD do 93.6 0.22 7.6E-06 34.2 6.5 25 48-72 73-97 (152)
64 2cwb_A Chimera of immunoglobul 89.8 0.061 2.1E-06 35.3 0.0 37 111-147 19-55 (108)
65 3u3c_B Paxillin LD2 peptide; 4 80.1 1.3 4.6E-05 20.5 2.0 19 3-21 7-25 (26)
66 1h3o_B Transcription initiatio 38.9 41 0.0014 20.2 3.7 42 106-147 11-52 (76)
67 2f4m_B UV excision repair prot 34.1 43 0.0015 19.2 3.1 20 119-138 37-56 (61)
68 2bum_A Protocatechuate 3,4-dio 33.9 40 0.0014 24.3 3.6 25 46-70 109-138 (209)
69 1pve_A HHR23B, UV excision rep 31.5 44 0.0015 19.9 2.9 22 118-139 38-59 (72)
70 1zoq_C CREB-binding protein, i 31.0 24 0.00082 19.1 1.5 43 103-147 3-46 (47)
71 3zqs_A E3 ubiquitin-protein li 27.5 62 0.0021 22.9 3.6 54 48-106 124-179 (186)
72 3s7v_A Major capsid protein VP 27.3 1.3E+02 0.0044 22.5 5.3 24 63-86 214-239 (277)
73 2jrw_A Cyclic extended PEP.1; 27.2 16 0.00056 16.8 0.3 16 61-76 4-19 (26)
74 3kxt_A Chromatin protein CREN7 25.9 94 0.0032 17.4 3.4 11 52-62 46-56 (56)
75 1kbh_B CREB-binding protein, n 24.5 1E+02 0.0035 17.4 5.1 44 103-147 10-53 (59)
76 3pft_A Flavin reductase; desul 24.5 27 0.00093 23.6 1.2 30 63-92 43-75 (157)
77 3g9r_A Fusion complex of HIV-1 23.6 54 0.0019 17.1 2.0 13 3-15 30-42 (42)
78 2fkn_A Urocanate hydratase; ro 22.9 65 0.0022 26.6 3.3 26 121-146 278-303 (552)
79 1x87_A Urocanase protein; stru 22.8 65 0.0022 26.6 3.3 26 121-146 277-302 (551)
80 1uwk_A Urocanate hydratase; hy 22.5 67 0.0023 26.5 3.3 26 121-146 282-307 (557)
81 1sid_A Polyomavirus coat prote 21.5 1.6E+02 0.0055 23.0 5.1 24 63-86 249-274 (383)
82 2ccv_A Helix pomatia agglutini 21.4 1.4E+02 0.0047 18.6 4.1 23 47-70 28-50 (101)
83 1vps_A Polyomavirus VP1 pentam 21.3 2.1E+02 0.0071 21.5 5.5 24 63-86 218-243 (289)
84 2cu9_A Spcia1, histone chapero 20.5 1.7E+02 0.0057 20.2 4.6 38 29-66 36-86 (161)
85 4fmh_A VP1; viral capsid prote 20.2 1.8E+02 0.0062 21.9 5.0 42 42-86 204-247 (289)
86 1b33_N Phycobilisome 7.8 KD li 20.2 84 0.0029 18.4 2.6 27 3-29 33-59 (67)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=2.2e-54 Score=308.14 Aligned_cols=148 Identities=65% Similarity=1.220 Sum_probs=145.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
+|.|||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.
T Consensus 4 ~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 83 (151)
T 4gpr_A 4 MAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK 83 (151)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+|.||+++|.++|+|+++|.+||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 84 NGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999974
No 2
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.7e-54 Score=306.24 Aligned_cols=147 Identities=46% Similarity=0.864 Sum_probs=142.3
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
|.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 6 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 85 (154)
T 2c2v_B 6 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 85 (154)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 86 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN 152 (154)
T ss_dssp CBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999974
No 3
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=1.6e-53 Score=303.47 Aligned_cols=147 Identities=80% Similarity=1.410 Sum_probs=144.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
+|.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 83 (150)
T 1z2u_A 4 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 83 (150)
T ss_dssp HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 84 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999995
No 4
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.4e-53 Score=303.38 Aligned_cols=147 Identities=48% Similarity=0.906 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 81 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 82 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 82 GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp CBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999974
No 5
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=6.4e-54 Score=305.18 Aligned_cols=147 Identities=48% Similarity=0.931 Sum_probs=144.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEeecCC-CcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcccc
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~ 79 (148)
||.+||++|+++|++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 1 ~~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~ 80 (149)
T 1fxt_A 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 80 (149)
T ss_dssp CCHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCc
Confidence 6889999999999999999999999887 999999999999999999999999999999999999999999999999999
Q ss_pred C-CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 80 S-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 80 ~-~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
. +|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 81 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 81 SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp SSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 7 9999999999999999999999999999999999999999999999999999999999999999996
No 6
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=3.8e-53 Score=305.81 Aligned_cols=146 Identities=79% Similarity=1.373 Sum_probs=143.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
+|.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 21 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~ 100 (166)
T 2ayv_A 21 GALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINS 100 (166)
T ss_dssp THHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 146 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 101 ~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 101 QGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999997
No 7
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=4.3e-53 Score=305.32 Aligned_cols=147 Identities=81% Similarity=1.401 Sum_probs=144.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
+|.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 19 ~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~ 98 (165)
T 2c4o_A 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 98 (165)
T ss_dssp HHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 99 ~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 99 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred CCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999995
No 8
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.7e-53 Score=302.90 Aligned_cols=145 Identities=39% Similarity=0.702 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
|.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.+
T Consensus 14 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 93 (158)
T 1zdn_A 14 IIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGAN 93 (158)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 032038 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 146 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 94 G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 94 GEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp SBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
No 9
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=9.6e-53 Score=304.48 Aligned_cols=146 Identities=38% Similarity=0.827 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
|.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+.+
T Consensus 5 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~ 84 (169)
T 1ayz_A 5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYAN 84 (169)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 85 G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 85 GEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp SBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 10
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.4e-52 Score=299.16 Aligned_cols=146 Identities=44% Similarity=0.886 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
|.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 5 a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 84 (152)
T 2aak_A 5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYAD 84 (152)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 85 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 150 (152)
T 2aak_A 85 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150 (152)
T ss_dssp SBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999999999999996
No 11
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=3.5e-53 Score=303.14 Aligned_cols=148 Identities=45% Similarity=0.823 Sum_probs=144.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
+|.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 84 (155)
T 1jat_A 5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 84 (155)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 85 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~ 152 (155)
T 1jat_A 85 LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 152 (155)
T ss_dssp TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred CCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999963
No 12
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=4.3e-52 Score=299.98 Aligned_cols=147 Identities=40% Similarity=0.802 Sum_probs=143.1
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCC-CcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
|.|||++|+++|+++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 4 a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~ 83 (164)
T 3h8k_A 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP 83 (164)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCC
Confidence 789999999999999999999999876 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCcc-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 81 NGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~-------------~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|.||+++|. ++|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++.
T Consensus 84 ~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s~~ 163 (164)
T 3h8k_A 84 DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLG 163 (164)
T ss_dssp TSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred CCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 9999999996 789999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 032038 148 G 148 (148)
Q Consensus 148 ~ 148 (148)
+
T Consensus 164 ~ 164 (164)
T 3h8k_A 164 L 164 (164)
T ss_dssp C
T ss_pred C
Confidence 4
No 13
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4e-52 Score=301.42 Aligned_cols=147 Identities=40% Similarity=0.800 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 5 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~ 84 (169)
T 1yh2_A 5 RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSA 84 (169)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCcc----CCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 82 GSICLDILK----EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 82 G~icl~~l~----~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
|.||+++|. ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 85 G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 155 (169)
T 1yh2_A 85 GRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ 155 (169)
T ss_dssp CBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccc
Confidence 999999998 8999999999999999999999999999999999999999999999999999999963
No 14
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=3.3e-52 Score=299.20 Aligned_cols=147 Identities=44% Similarity=0.833 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHHhcC---CCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccc
Q 032038 2 ASKRILKELKDLQKD---PPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNI 78 (148)
Q Consensus 2 a~kRL~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv 78 (148)
|.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 9 a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni 88 (159)
T 2bep_A 9 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI 88 (159)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCC
Confidence 579999999999985 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 79 NS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 79 ~~-~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+. +|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+|
T Consensus 89 ~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 159 (159)
T 2bep_A 89 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159 (159)
T ss_dssp CTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 94 99999999999999999999999999999999999999999999999999999999999999999986
No 15
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=4.5e-52 Score=299.35 Aligned_cols=146 Identities=38% Similarity=0.773 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCC-----CcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCc
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 76 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~-----~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hp 76 (148)
|.+||++|+++|++++++|+++.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||
T Consensus 11 ~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HP 90 (163)
T 3rcz_B 11 CKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHP 90 (163)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccC
Confidence 789999999999999999999999876 899999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeccCccC--CCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 77 NINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 77 nv~~~G~icl~~l~~--~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
||+.+|.||+++|.+ +|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus 91 nV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 91 NVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163 (163)
T ss_dssp TBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence 999999999999975 49999999999999999999999999999999999999999999999999999983
No 16
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=5.4e-52 Score=297.26 Aligned_cols=145 Identities=37% Similarity=0.732 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
|.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.+
T Consensus 10 ~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 89 (156)
T 2e2c_A 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQS 89 (156)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCccC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++| +|+++|.++||+|+++||.
T Consensus 90 G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~ 154 (156)
T 2e2c_A 90 GNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS 154 (156)
T ss_dssp CBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred ceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999 8999999999999999984
No 17
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1e-51 Score=304.41 Aligned_cols=147 Identities=47% Similarity=0.862 Sum_probs=140.7
Q ss_pred ChHHHHHHHHHHHhcCCC-------------CCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCee
Q 032038 1 MASKRILKELKDLQKDPP-------------TSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKV 67 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~-------------~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v 67 (148)
+|.+||++|+++|+++++ .|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|
T Consensus 32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V 111 (193)
T 2f4z_A 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM 111 (193)
T ss_dssp CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence 367999999999999876 7999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCcccc-CCCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 032038 68 AFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 146 (148)
Q Consensus 68 ~f~t~i~Hpnv~-~~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
+|.|+||||||+ .+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya 191 (193)
T 2f4z_A 112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA 191 (193)
T ss_dssp EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence 999999999999 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 032038 147 M 147 (148)
Q Consensus 147 ~ 147 (148)
+
T Consensus 192 ~ 192 (193)
T 2f4z_A 192 K 192 (193)
T ss_dssp C
T ss_pred c
Confidence 7
No 18
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.6e-51 Score=303.63 Aligned_cols=146 Identities=62% Similarity=1.152 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 81 (148)
|.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||||+.+
T Consensus 49 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~ 128 (194)
T 3bzh_A 49 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQ 128 (194)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++|++|+++||+
T Consensus 129 G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 129 GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp CBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999996
No 19
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-51 Score=297.72 Aligned_cols=146 Identities=41% Similarity=0.838 Sum_probs=141.9
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecC-CCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
|.+||++|+++|++++++|+++.+.+ +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.
T Consensus 5 a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~ 84 (165)
T 2ucz_A 5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP 84 (165)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCC
Confidence 67999999999999999999999986 69999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCc-------------cCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 81 NGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l-------------~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|.||+++| .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++.
T Consensus 85 ~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~~~ 164 (165)
T 2ucz_A 85 NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSLG 164 (165)
T ss_dssp TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred CCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhh
Confidence 999999999 6889999999999999999999999999999999999999999999999999999874
No 20
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1e-51 Score=296.08 Aligned_cols=146 Identities=35% Similarity=0.734 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecC-----CCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCc
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 76 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hp 76 (148)
|.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|+|+||.|++.|.||++||++||+|+|.|++|||
T Consensus 5 a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 84 (157)
T 2gjd_A 5 CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHP 84 (157)
T ss_dssp HHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccC
Confidence 67999999999999999999999875 3899999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeccCccC--CCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 77 NINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 77 nv~~~G~icl~~l~~--~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 85 nv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 85 NVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp TBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred CCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 999999999999987 79999999999999999999999999999999999999999999999999999996
No 21
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=2.1e-51 Score=304.99 Aligned_cols=148 Identities=44% Similarity=0.833 Sum_probs=143.3
Q ss_pred ChHHHHHHHHHHHhcC---CCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcc
Q 032038 1 MASKRILKELKDLQKD---PPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN 77 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpn 77 (148)
+|.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 5 ~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 84 (201)
T 3k9o_A 5 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 84 (201)
T ss_dssp TTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCC
Confidence 4789999999999987 3689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC-CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 78 INS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 78 v~~-~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
|+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 85 v~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 156 (201)
T 3k9o_A 85 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 156 (201)
T ss_dssp BCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred CcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 995 99999999999999999999999999999999999999999999999999999999999999999975
No 22
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=9.4e-52 Score=309.13 Aligned_cols=147 Identities=47% Similarity=0.900 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcccc-C
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-S 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~-~ 80 (148)
|.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+ .
T Consensus 24 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~ 103 (216)
T 2pwq_A 24 ELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQ 103 (216)
T ss_dssp HHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCC
Confidence 679999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 104 ~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~ 171 (216)
T 2pwq_A 104 TGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG 171 (216)
T ss_dssp TCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999974
No 23
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=2.3e-51 Score=295.33 Aligned_cols=147 Identities=37% Similarity=0.743 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecC-----CCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCc
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 76 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hp 76 (148)
|.+||++|+++|++++++|+.+.+.. +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||
T Consensus 8 a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 87 (161)
T 2grr_A 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 87 (161)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccC
Confidence 57999999999999999999998874 5899999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeccCccC--CCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 77 NINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 77 nv~~~G~icl~~l~~--~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 88 nv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 161 (161)
T 2grr_A 88 NVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 161 (161)
T ss_dssp TBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence 999999999999975 899999999999999999999999999999999999999999999999999999985
No 24
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=2.5e-51 Score=293.54 Aligned_cols=146 Identities=37% Similarity=0.786 Sum_probs=142.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeE-eecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcccc
Q 032038 1 MASKRILKELKDLQKDPPTSCSA-GPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~-~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~ 79 (148)
+|.+||++|+++|+++++.|+.+ .+.++|+++|+++|. |++|||+||.|++.|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 82 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 82 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence 37899999999999999999999 788899999999999 9999999999999999999999999999999999999999
Q ss_pred CCCceeccCc-cCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 80 SNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 80 ~~G~icl~~l-~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
.+|.||+++| .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 83 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~ 151 (155)
T 1wzv_A 83 ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 151 (155)
T ss_dssp TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCE
T ss_pred CCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999 8999999999999999999999999999999999999999999999999999999996
No 25
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.4e-51 Score=299.29 Aligned_cols=147 Identities=33% Similarity=0.620 Sum_probs=142.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
.+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 30 ~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~ 109 (179)
T 1i7k_A 30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT 109 (179)
T ss_dssp CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCcccc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++| +|+++|.++|++++++++.+
T Consensus 110 ~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~ 176 (179)
T 1i7k_A 110 QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176 (179)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC-
T ss_pred CCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999 99999999999999999864
No 26
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=3.6e-51 Score=305.78 Aligned_cols=148 Identities=46% Similarity=0.912 Sum_probs=143.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEeecCCC-cceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcccc
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~~-~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~ 79 (148)
+|.+||++|+++|++++++|+++.+.++| +++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 47899999999999999999999998875 66999999999999999999999999999999999999999999999999
Q ss_pred C-CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 80 S-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 80 ~-~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
. +|.||+++|.++|+|++||.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~ 151 (215)
T 1tte_A 82 SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE 151 (215)
T ss_dssp SSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCC
T ss_pred CCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 8 99999999999999999999999999999999999999999999999999999999999999999964
No 27
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=5.4e-50 Score=289.76 Aligned_cols=145 Identities=34% Similarity=0.640 Sum_probs=139.2
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeec-CCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~-~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
+.|||++|+++|+++++.|+++.+. ++|+..|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 15 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 93 (167)
T 3fn1_B 15 RDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE 93 (167)
T ss_dssp HHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCC
Confidence 5799999999999999999999865 47899999998 899999999999999999999999999999999999999999
Q ss_pred CCceeccCccC------CCCCcCCHHHHHHHHHHhhcC-CCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 81 NGSICLDILKE------QWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~------~W~p~~~l~~il~~l~~ll~~-p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|.||+++|.. +|+|+++|.+||.+|+++|.+ ||+++|+|.||+++|++|+++|.++||+|+++||+
T Consensus 94 ~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 94 TGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp TCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 99999999975 799999999999999999999 69999999999999999999999999999999996
No 28
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=5.4e-50 Score=305.57 Aligned_cols=147 Identities=44% Similarity=0.833 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHHhcC---CCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccc
Q 032038 2 ASKRILKELKDLQKD---PPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNI 78 (148)
Q Consensus 2 a~kRL~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv 78 (148)
|.+||++||++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||
T Consensus 58 a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV 137 (253)
T 3e46_A 58 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI 137 (253)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCc
Confidence 679999999999987 47899999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 79 NS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 79 ~~-~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+. +|.||+++|.++|+|+++|.+||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 138 ~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 138 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 208 (253)
T ss_dssp CTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred cCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 94 99999999999999999999999999999999999999999999999999999999999999999975
No 29
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=1.9e-50 Score=288.04 Aligned_cols=144 Identities=30% Similarity=0.644 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC-
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS- 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~- 80 (148)
|.|||++|++++++. |+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.
T Consensus 3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~ 79 (152)
T 2onu_A 3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEA 79 (152)
T ss_dssp CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCc
Confidence 679999999999874 6888899999999999999999999999999999999999999999999999999999994
Q ss_pred CCceeccCccCCCCCcCCHHHHHHH-HHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~-l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+|.||+++|.++|+|++++.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 80 ~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~ 148 (152)
T 2onu_A 80 SGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK 148 (152)
T ss_dssp TCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCG
T ss_pred CCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999998 6899999999999999999999999999999999999999963
No 30
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=2.6e-49 Score=289.85 Aligned_cols=146 Identities=36% Similarity=0.749 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEe-ecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
|.|||++||++|+++++.|+++. +.++|+++|+++|.||++|+|+||.|++.|.||++||++||+|+|.|++|||||+.
T Consensus 8 a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~ 87 (183)
T 3rz3_A 8 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 87 (183)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCC
Confidence 67999999999999999999998 66789999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCcc-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHH------CHHHHHHHHHHH
Q 032038 81 NGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT------DRNKYETTARSW 141 (148)
Q Consensus 81 ~G~icl~~l~-------------~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~------~~~~f~~~~~~~ 141 (148)
+|.||+++|. ++|+|+++|.+||.+|+++|.+||+++|+|.+|+++|++ ++++|.++|+++
T Consensus 88 ~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v~~~ 167 (183)
T 3rz3_A 88 TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQ 167 (183)
T ss_dssp TSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 9999999996 789999999999999999999999999999999999998 789999999999
Q ss_pred HHHhhC
Q 032038 142 TQKYAM 147 (148)
Q Consensus 142 ~~~~a~ 147 (148)
+++++.
T Consensus 168 v~~s~~ 173 (183)
T 3rz3_A 168 VLGTKV 173 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998863
No 31
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-49 Score=288.14 Aligned_cols=142 Identities=34% Similarity=0.640 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccc-cC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNI-NS 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv-~~ 80 (148)
|.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+|||||| +.
T Consensus 24 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~ 103 (169)
T 1yrv_A 24 AYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPH 103 (169)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999 68
Q ss_pred CCceeccCcc--CCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHH
Q 032038 81 NGSICLDILK--EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 144 (148)
Q Consensus 81 ~G~icl~~l~--~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~ 144 (148)
+|.||+++|. ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++ ++++++
T Consensus 104 ~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 104 TGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp TCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred CCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 9999999998 89999999999999999999999999999999999999999999999 888764
No 32
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=2.7e-50 Score=287.93 Aligned_cols=147 Identities=38% Similarity=0.833 Sum_probs=137.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEee-cCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcccc
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGP-VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~-~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~ 79 (148)
+|.+||++|+++|+++++.|+.+.+ .++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 80 (154)
T 1c4z_D 2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID 80 (154)
T ss_dssp --CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC
Confidence 4679999999999999999998654 5679999999998 9999999999999999999999999999999999999999
Q ss_pred CCCceeccCcc-CCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 80 SNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 80 ~~G~icl~~l~-~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
.+|.||+++|. ++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 81 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (154)
T 1c4z_D 81 EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK 150 (154)
T ss_dssp TTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred CCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 99999999996 8999999999999999999999999999999999999999999999999999999963
No 33
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.9e-49 Score=287.98 Aligned_cols=141 Identities=38% Similarity=0.856 Sum_probs=109.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEeecC-CCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcccc
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~ 79 (148)
.|.|||++|+++|+++++.|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 17 ~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~ 96 (172)
T 2awf_A 17 RGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD 96 (172)
T ss_dssp TTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCC
Confidence 367999999999999999999999876 6999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCcc-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHH-HHHHHHHHH
Q 032038 80 SNGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRN-KYETTARSW 141 (148)
Q Consensus 80 ~~G~icl~~l~-------------~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~-~f~~~~~~~ 141 (148)
.+|.||+++|. ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|++ +|+++||+|
T Consensus 97 ~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 97 KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp TTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred CCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 99999999996 689999999999999999999999999999999999999999 999999975
No 34
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-49 Score=289.10 Aligned_cols=142 Identities=32% Similarity=0.709 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC-
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS- 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~- 80 (148)
|.|||++|+++|+. +|+++.+. +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 26 a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~ 101 (179)
T 2z5d_A 26 GKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEA 101 (179)
T ss_dssp HHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCC
Confidence 57999999999985 47888887 67999999999999999999999999999999999999999999999999998
Q ss_pred CCceeccCccCCCCCcCCHHHHHHH-HHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~-l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|.||+++|.++|+|+++|.+||.+ |+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 102 ~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~ 169 (179)
T 2z5d_A 102 SGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 169 (179)
T ss_dssp TCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSS
T ss_pred CCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999 999999999999999999999999999999999999999996
No 35
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=2e-48 Score=282.61 Aligned_cols=146 Identities=33% Similarity=0.659 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHHhc-C-C------CC---CeeEee-cCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEE
Q 032038 2 ASKRILKELKDLQK-D-P------PT---SCSAGP-VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF 69 (148)
Q Consensus 2 a~kRL~~E~~~l~~-~-~------~~---~~~~~~-~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f 69 (148)
|.+||++|+++|++ . + +. ++.+.+ .++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus 7 ~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f 86 (172)
T 2y9m_A 7 CMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISF 86 (172)
T ss_dssp HHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred HHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEE
Confidence 57999999999998 5 3 32 466777 67899999999999999999999999999999999999999999
Q ss_pred ee-cccCcccc-CCCceeccCcc-CCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHH-CHHHHHHHHHHHHHHh
Q 032038 70 RT-KVFHPNIN-SNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRNKYETTARSWTQKY 145 (148)
Q Consensus 70 ~t-~i~Hpnv~-~~G~icl~~l~-~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~-~~~~f~~~~~~~~~~~ 145 (148)
.| +||||||+ .+|.||+++|. ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++ |+++|.++||+|++++
T Consensus 87 ~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~~~ 166 (172)
T 2y9m_A 87 MQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAER 166 (172)
T ss_dssp CTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred eeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99 99999996 79999999998 899999999999999999999999999999999999999 9999999999999998
Q ss_pred hC
Q 032038 146 AM 147 (148)
Q Consensus 146 a~ 147 (148)
+.
T Consensus 167 ~~ 168 (172)
T 2y9m_A 167 ER 168 (172)
T ss_dssp HC
T ss_pred Hh
Confidence 73
No 36
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-48 Score=280.22 Aligned_cols=140 Identities=34% Similarity=0.727 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEe-ecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
|.+||++|+++| ++++|+++. +.++|+++|+++| ||++|||+||.|++.|.||++||++||+|+|.|++|||||+.
T Consensus 7 ~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 83 (160)
T 1y8x_A 7 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 83 (160)
T ss_dssp HHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCC
Confidence 679999999999 467899998 7889999999998 999999999999999999999999999999999999999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHH
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 144 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~ 144 (148)
+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|++.
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~ 147 (160)
T 1y8x_A 84 EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 147 (160)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred CCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999874
No 37
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=2e-48 Score=314.52 Aligned_cols=148 Identities=80% Similarity=1.381 Sum_probs=145.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
+|.|||++|+++|++++++|+++.|.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||++
T Consensus 3 ~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 82 (399)
T 4ddg_A 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82 (399)
T ss_dssp HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+|.||+++|.++|+|++++.+||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 83 ~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~ 150 (399)
T 4ddg_A 83 NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG 150 (399)
T ss_dssp TCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred CCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999974
No 38
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6e-48 Score=281.78 Aligned_cols=140 Identities=33% Similarity=0.701 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEe-ecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
|.+||++|+++| ++++|+++. +.++|+++|+++| ||++|||+||.|++.|.||++||++||+|+|.|++|||||+.
T Consensus 27 ~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~ 103 (180)
T 2nvu_C 27 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 103 (180)
T ss_dssp HHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCC
Confidence 679999999999 467899998 7889999999998 999999999999999999999999999999999999999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHH
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 144 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~ 144 (148)
+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|++.
T Consensus 104 ~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~ 167 (180)
T 2nvu_C 104 EGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 167 (180)
T ss_dssp TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred CCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999874
No 39
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=4.7e-48 Score=280.29 Aligned_cols=142 Identities=27% Similarity=0.645 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcccc-C
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-S 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~-~ 80 (148)
|.+||++|+++|++++. + + +.++|+++|+++|.||++|+|+||.|++.|.||++||++||+|+|.|+||||||+ .
T Consensus 13 ~~~RL~~El~~l~~~~~-~--v-~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~ 88 (171)
T 1yf9_A 13 SNRRREMDYMRLCNSTR-K--V-YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDER 88 (171)
T ss_dssp CCHHHHHHHHHHHSSSS-C--E-EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCC-C--C-CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCccc
Confidence 46999999999999874 3 3 3578999999999999999999999999999999999999999999999999999 5
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHH-HHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSI-CSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l-~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|.||+++|.++|+|+++|.+||.+| ++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 89 ~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~ 156 (171)
T 1yf9_A 89 SGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156 (171)
T ss_dssp TCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999997 79999999999999999999999999999999999999996
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=4.7e-47 Score=279.17 Aligned_cols=141 Identities=30% Similarity=0.612 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEe----ecCCCcc---eeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccc
Q 032038 2 ASKRILKELKDLQKDPPTSCSAG----PVAEDMF---HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF 74 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~----~~~~~~~---~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~ 74 (148)
|.+||++||++|+ +++|+++. +.++|++ +|+++|. |++|||+||.|++.|.||++||++||+|+|.|++|
T Consensus 30 a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 106 (190)
T 3o2u_A 30 ARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIF 106 (190)
T ss_dssp HHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred HHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcc
Confidence 6799999999999 67899998 7889999 9999997 88899999999999999999999999999999999
Q ss_pred CccccCCCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHh
Q 032038 75 HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 145 (148)
Q Consensus 75 Hpnv~~~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|++..
T Consensus 107 HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~ 177 (190)
T 3o2u_A 107 HPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGG 177 (190)
T ss_dssp CTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTC
T ss_pred cCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999654
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.6e-45 Score=266.35 Aligned_cols=138 Identities=27% Similarity=0.587 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHhcCC------------CCCeeEeecCCCcceeEEEEeCCCCCCCC--CCEEEEEEEcCCCCCCCCCee
Q 032038 2 ASKRILKELKDLQKDP------------PTSCSAGPVAEDMFHWQATIMGPPDSPYA--GGVFLVTIHFPPDYPFKPPKV 67 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~------------~~~~~~~~~~~~~~~w~~~i~gp~~t~y~--gg~f~~~i~~p~~yP~~pP~v 67 (148)
|.|||++|+++|++++ ..++.+.+.++|+++|+++|.||++|+|+ ||.|++.|.||++||++||+|
T Consensus 9 a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v 88 (167)
T 4ds2_A 9 SNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTV 88 (167)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEE
Confidence 6799999999999977 77899999999999999999999999999 999999999999999999999
Q ss_pred EEeecccCccccCCCceeccCccCCCCCcCCHHHHHH-HHHHhhcC--CCCCCCCcHHHHHHHHHCHHHHHHHHH
Q 032038 68 AFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL-SICSLLTD--PNPDDPLVPEIAHMYKTDRNKYETTAR 139 (148)
Q Consensus 68 ~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~l~~il~-~l~~ll~~--p~~~~~~n~~a~~~~~~~~~~f~~~~~ 139 (148)
+|.|++|||||+.+|.||+++|.++|+|++++.++|. .|++++.. |++++|+|.|||++|++|+++|.++||
T Consensus 89 ~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr 163 (167)
T 4ds2_A 89 RFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163 (167)
T ss_dssp EESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred EEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence 9999999999999999999999999999999999754 67777774 899999999999999999999999998
No 42
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=7.2e-44 Score=254.78 Aligned_cols=128 Identities=28% Similarity=0.505 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHhcC-CCCCeeEeecC-C--CcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcc
Q 032038 2 ASKRILKELKDLQKD-PPTSCSAGPVA-E--DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN 77 (148)
Q Consensus 2 a~kRL~~E~~~l~~~-~~~~~~~~~~~-~--~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpn 77 (148)
+.+||++|+++|+++ ++.|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 22 ~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN 101 (156)
T 2q0v_A 22 RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSC 101 (156)
T ss_dssp HHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCC
Confidence 679999999999998 78899998864 3 5999999999999999999999999999999999999999999999999
Q ss_pred ccCCCce---eccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHC
Q 032038 78 INSNGSI---CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD 130 (148)
Q Consensus 78 v~~~G~i---cl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~ 130 (148)
|+.+|.| |+++|. +|+|+++|.+||.+|+++|.+|++++++|++|+++|++|
T Consensus 102 V~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 102 VDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp BCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred CccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 9999999 888886 599999999999999999999999999999999988765
No 43
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=3.4e-43 Score=275.11 Aligned_cols=146 Identities=33% Similarity=0.583 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHHhcCCCCC----eeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeec-----
Q 032038 2 ASKRILKELKDLQKDPPTS----CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK----- 72 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~----~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~----- 72 (148)
+.+||++|+++|++++++| +.+.+.++|+..|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+
T Consensus 77 ~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ 156 (323)
T 3ceg_A 77 RARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSV 156 (323)
T ss_dssp HHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcc
Confidence 5799999999999987764 4566788999999999999999999999999999999999999999999998
Q ss_pred ccCccccCCCceeccCcc-------CCCCCcC-CHHHHHHHHHHhhc--CCCCCCCCcHHH--HHHHHHCHHHHHHHHHH
Q 032038 73 VFHPNINSNGSICLDILK-------EQWSPAL-TISKVLLSICSLLT--DPNPDDPLVPEI--AHMYKTDRNKYETTARS 140 (148)
Q Consensus 73 i~Hpnv~~~G~icl~~l~-------~~W~p~~-~l~~il~~l~~ll~--~p~~~~~~n~~a--~~~~~~~~~~f~~~~~~ 140 (148)
+|||||+.+|.||+++|. ++|+|++ +|.+||.+|++||. +|++++|+|.++ +.++.+|+++|.++|+.
T Consensus 157 ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~ 236 (323)
T 3ceg_A 157 RFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQ 236 (323)
T ss_dssp CCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHHHH
Confidence 999999999999999997 6899999 89999999999996 677799999987 57899999999999999
Q ss_pred HHHHhhC
Q 032038 141 WTQKYAM 147 (148)
Q Consensus 141 ~~~~~a~ 147 (148)
|+.+||+
T Consensus 237 ~t~k~A~ 243 (323)
T 3ceg_A 237 ATVKWAM 243 (323)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9999996
No 44
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=5.2e-43 Score=242.26 Aligned_cols=115 Identities=37% Similarity=0.709 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecc-cCccccC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINS 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i-~Hpnv~~ 80 (148)
|.+||++|+++++++++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++ |||||+.
T Consensus 7 a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~ 86 (125)
T 2fo3_A 7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYS 86 (125)
T ss_dssp --CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCC
Confidence 679999999999999999999999999999999999999999999999999999999999999999999996 9999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCCC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPD 116 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~ 116 (148)
+|.||+++|.++|+|++++.+||.+|+++|.+|+..
T Consensus 87 ~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~ 122 (125)
T 2fo3_A 87 NGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEK 122 (125)
T ss_dssp TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-----
T ss_pred CCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccc
Confidence 999999999999999999999999999999999764
No 45
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=4.1e-42 Score=240.81 Aligned_cols=114 Identities=38% Similarity=0.720 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecc-cCccccC
Q 032038 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINS 80 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i-~Hpnv~~ 80 (148)
|.+||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+.
T Consensus 21 ~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~ 100 (136)
T 2h2y_A 21 ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYS 100 (136)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCC
Confidence 679999999999999999999999999999999999999999999999999999999999999999999996 9999999
Q ss_pred CCceeccCccCCCCCcCCHHHHHHHHHHhhcCCCC
Q 032038 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~l~~ll~~p~~ 115 (148)
+|.||+++|.++|+|++++.+||.+|+++|.+|+.
T Consensus 101 ~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 101 NGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 99999999999999999999999999999999874
No 46
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=4.6e-42 Score=246.08 Aligned_cols=123 Identities=32% Similarity=0.516 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHHhcCCCCC-eeEeec-CCC--cceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcc
Q 032038 2 ASKRILKELKDLQKDPPTS-CSAGPV-AED--MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN 77 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~-~~~~~~-~~~--~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpn 77 (148)
+.+||++|+++|++++++| +.+.+. ++| +++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++||||
T Consensus 26 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 105 (160)
T 2a4d_A 26 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 105 (160)
T ss_dssp HHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCC
Confidence 5689999999999998888 777764 444 899999999999999999999999999999999999999999999999
Q ss_pred cc-CCCceeccCcc--CCCCCcCCHHHHHHHHHHhhc-CCCCCCCCcHHHH
Q 032038 78 IN-SNGSICLDILK--EQWSPALTISKVLLSICSLLT-DPNPDDPLVPEIA 124 (148)
Q Consensus 78 v~-~~G~icl~~l~--~~W~p~~~l~~il~~l~~ll~-~p~~~~~~n~~a~ 124 (148)
|+ .+|.||+++|. ++|+|+++|++||.+|+++|. +||+++|+|.|||
T Consensus 106 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 106 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp BCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred EECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 99 69999999997 899999999999999999995 6999999999986
No 47
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=5.5e-43 Score=245.87 Aligned_cols=125 Identities=31% Similarity=0.617 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHhcC-CCCCeeEeecC-C--CcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcc
Q 032038 2 ASKRILKELKDLQKD-PPTSCSAGPVA-E--DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN 77 (148)
Q Consensus 2 a~kRL~~E~~~l~~~-~~~~~~~~~~~-~--~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpn 77 (148)
+.+||++|+++++++ ++.|+++.+.+ + |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 7 ~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 86 (138)
T 1jat_B 7 RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPC 86 (138)
T ss_dssp HHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCC
Confidence 468999999999998 78999998864 3 4999999999999999999999999999999999999999999999999
Q ss_pred ccCC-Cce--eccCccCCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHH
Q 032038 78 INSN-GSI--CLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 127 (148)
Q Consensus 78 v~~~-G~i--cl~~l~~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~ 127 (148)
|+.+ |.| |++++. +|+|++++.+||.+|+++|.+||+++++|++|+.+|
T Consensus 87 v~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 87 VNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp BCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred EeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 9975 999 899885 899999999999999999999999999999987643
No 48
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.7e-41 Score=234.16 Aligned_cols=109 Identities=42% Similarity=0.809 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcCCCCCeeEe--ecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeeccc--Cccc
Q 032038 3 SKRILKELKDLQKDPPTSCSAG--PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF--HPNI 78 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~--~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~--Hpnv 78 (148)
.+||++|++++++++++|+++. +.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++| ||||
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV 103 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV 103 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccC
Confidence 3999999999999999999965 78899999999999999999999999999999999999999999999999 9999
Q ss_pred cCCCceeccCccCCCCCcCCHHHHHHHHHHhhc
Q 032038 79 NSNGSICLDILKEQWSPALTISKVLLSICSLLT 111 (148)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~l~~il~~l~~ll~ 111 (148)
+.+|+||+++|.++|+|++++++||.+|+++|.
T Consensus 104 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 104 YSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp CTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 999999999999999999999999999999984
No 49
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1.8e-41 Score=245.37 Aligned_cols=123 Identities=32% Similarity=0.516 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHhcCCCCC-eeEeec-CCC--cceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCcc
Q 032038 2 ASKRILKELKDLQKDPPTS-CSAGPV-AED--MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN 77 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~~~~-~~~~~~-~~~--~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpn 77 (148)
+.+||++|+++|++++++| +.+.+. ++| +++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 36 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 115 (170)
T 2hlw_A 36 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 115 (170)
T ss_dssp HHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSS
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCC
Confidence 5799999999999998888 677764 444 999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCceeccCcc--CCCCCcCCHHHHHHHHHHhhc-CCCCCCCCcHHHH
Q 032038 78 IN-SNGSICLDILK--EQWSPALTISKVLLSICSLLT-DPNPDDPLVPEIA 124 (148)
Q Consensus 78 v~-~~G~icl~~l~--~~W~p~~~l~~il~~l~~ll~-~p~~~~~~n~~a~ 124 (148)
|+ .+|.||+++|. ++|+|+++|.+||.+|+++|. .||+++|+|.|||
T Consensus 116 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 116 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp BCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred EeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 99 79999999997 899999999999999999997 5899999999886
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-39 Score=237.61 Aligned_cols=135 Identities=24% Similarity=0.566 Sum_probs=112.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccC
Q 032038 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 80 (148)
.|.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+ ||+|+.
T Consensus 14 ~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~ 91 (187)
T 2f4w_A 14 TATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKC 91 (187)
T ss_dssp CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceecc
Confidence 367999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred CCceeccCc---cCCCCCcCCHHHHHHHHHHhhcCCCCCCC---CcHHHHHHHHHCHHHHHHH
Q 032038 81 NGSICLDIL---KEQWSPALTISKVLLSICSLLTDPNPDDP---LVPEIAHMYKTDRNKYETT 137 (148)
Q Consensus 81 ~G~icl~~l---~~~W~p~~~l~~il~~l~~ll~~p~~~~~---~n~~a~~~~~~~~~~f~~~ 137 (148)
+|.||+++| .++|+|+++|.+||.+|+++|.+|+++.. ...+..+.+..+...|+.+
T Consensus 92 ~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g~~~~~~~~r~~~a~~s~~~~~~ 154 (187)
T 2f4w_A 92 NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLK 154 (187)
T ss_dssp TSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHHHhhc
Confidence 999999999 68999999999999999999999987644 2333344444444444433
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=3.5e-40 Score=241.73 Aligned_cols=137 Identities=24% Similarity=0.539 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHhcCC---CCCeeEeecCCCcceeEEEEeCC-CCCCCCC-----------CEEEEEEEcCCCCCCCCCe
Q 032038 2 ASKRILKELKDLQKDP---PTSCSAGPVAEDMFHWQATIMGP-PDSPYAG-----------GVFLVTIHFPPDYPFKPPK 66 (148)
Q Consensus 2 a~kRL~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~gp-~~t~y~g-----------g~f~~~i~~p~~yP~~pP~ 66 (148)
|.+||++||++|++++ +.++++.++++|+++|+++|.|| ++|||+| |.|+++|.||++||++||+
T Consensus 28 a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~ 107 (186)
T 1zuo_A 28 ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPF 107 (186)
T ss_dssp HHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCe
Confidence 6799999999999988 68899999999999999999997 9999998 8999999999999999999
Q ss_pred eEEeecccCc-cccCCCceeccCcc-CCCCCcCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHH
Q 032038 67 VAFRTKVFHP-NINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 144 (148)
Q Consensus 67 v~f~t~i~Hp-nv~~~G~icl~~l~-~~W~p~~~l~~il~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~ 144 (148)
|+|.|++||| ||+.+|.||+++|. ++|+|+++|.+||.+|+++|.+|+.... |..++++|.+.++.++.+
T Consensus 108 V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~~--------~~~~~~~Y~~~~~~~~~~ 179 (186)
T 1zuo_A 108 VRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQ--------FGANKNQYNLARAQQSYN 179 (186)
T ss_dssp EEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEEC--------TTCCTTCCCHHHHHHHHH
T ss_pred EEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhHh--------hccCHHHHhHHHHHHHHH
Confidence 9999999999 69999999999996 7899999999999999999999865432 233455666666666554
Q ss_pred hh
Q 032038 145 YA 146 (148)
Q Consensus 145 ~a 146 (148)
.+
T Consensus 180 ~~ 181 (186)
T 1zuo_A 180 SI 181 (186)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.95 E-value=2.5e-29 Score=178.45 Aligned_cols=96 Identities=18% Similarity=0.304 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeeEEeec
Q 032038 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGG----------VFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg----------~f~~~i~~p~~yP~~pP~v~f~t~ 72 (148)
.+||++|++.|++ ++.+..+|++.|.+.+.||+||+|+|| .|.+++.||++||.+||+|+|.+.
T Consensus 34 ~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~ 107 (172)
T 2z6o_A 34 VQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPEL 107 (172)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred HHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCC
Confidence 7899999999999 467888999999999999999999999 999999999999999999999998
Q ss_pred -ccCccccCCCceeccCc-cC---CCCCcCCHHHHHH
Q 032038 73 -VFHPNINSNGSICLDIL-KE---QWSPALTISKVLL 104 (148)
Q Consensus 73 -i~Hpnv~~~G~icl~~l-~~---~W~p~~~l~~il~ 104 (148)
++||||+.+|+||+++| .. .|+|.++|.++|.
T Consensus 108 ~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~ 144 (172)
T 2z6o_A 108 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMA 144 (172)
T ss_dssp TTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred CCCCCCCCCCCcEechhhccccccccCCccCHHHHHh
Confidence 99999999999999999 43 4569999999984
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.84 E-value=5.8e-21 Score=136.37 Aligned_cols=113 Identities=25% Similarity=0.415 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcC-CC--CCeeEeecCCCcceeEEEEeCCCCCCCCCCE---EEEEEEcCCCCCCCCCeeEEeec-----
Q 032038 4 KRILKELKDLQKD-PP--TSCSAGPVAEDMFHWQATIMGPPDSPYAGGV---FLVTIHFPPDYPFKPPKVAFRTK----- 72 (148)
Q Consensus 4 kRL~~E~~~l~~~-~~--~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~---f~~~i~~p~~yP~~pP~v~f~t~----- 72 (148)
+|..+|...+.+. +. +...+...++...++-+.+.|.-.++|+|+. |.+.|.||++||++||.|.|.++
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 5677787777653 22 2223344556667777777777779999999 88999999999999999988551
Q ss_pred -----cc-CccccCCCceeccCccCCCCC-cCCHHHHHHHHHHhhcCCCCCC
Q 032038 73 -----VF-HPNINSNGSICLDILKEQWSP-ALTISKVLLSICSLLTDPNPDD 117 (148)
Q Consensus 73 -----i~-Hpnv~~~G~icl~~l~~~W~p-~~~l~~il~~l~~ll~~p~~~~ 117 (148)
|+ |||||.+|+||+++| ++|+| +.++.++|.+|+++|.+|+++.
T Consensus 111 ~~~~~I~~hpnVD~~G~I~lpyL-~~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 111 TISSSLPIQEYIDSNGWIALPIL-HAWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp TSCTTSTHHHHBCTTSBBCCGGG-GSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred ccccccCCCCCCCCCCcEeCccc-ccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 77 999999999999999 57999 5799999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.80 E-value=4.8e-21 Score=133.20 Aligned_cols=95 Identities=24% Similarity=0.420 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeeEEeec
Q 032038 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGG----------VFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg----------~f~~~i~~p~~yP~~pP~v~f~t~ 72 (148)
..||..||..|-+ +++...++-..|...+.||+||+|.|+ .|.+++.||.+||.+||+|+|.+.
T Consensus 36 ~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~l 109 (168)
T 3kpa_A 36 TARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPEL 109 (168)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccc
Confidence 4799999999987 556666777899999999999999999 899999999999999999999995
Q ss_pred -ccCccccCCCceeccCcc-CCC---CCcCCHHHHH
Q 032038 73 -VFHPNINSNGSICLDILK-EQW---SPALTISKVL 103 (148)
Q Consensus 73 -i~Hpnv~~~G~icl~~l~-~~W---~p~~~l~~il 103 (148)
++||+++.+|+|||+++. .-| .|.++|...|
T Consensus 110 dgkt~kmYr~GkICLdIhwkPlW~~n~P~fGiahal 145 (168)
T 3kpa_A 110 EGKTVKMYRGGKICMTTHFFPLWARNVPYFGISHVL 145 (168)
T ss_dssp TTTCSSEETTTEECCCTTHHHHHHHTTTTCCHHHHH
T ss_pred cCcCccccCCCcEEeccccchhhHhcCCchhHHHHH
Confidence 899999999999999871 122 3445666554
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.59 E-value=2e-15 Score=105.98 Aligned_cols=101 Identities=19% Similarity=0.390 Sum_probs=78.9
Q ss_pred HHHHHHHHhcC-CCCCeeEe---ecCCCcceeEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCeeEEeec------c
Q 032038 6 ILKELKDLQKD-PPTSCSAG---PVAEDMFHWQATIMGPPDSPYAGGVFL--VTIHFPPDYPFKPPKVAFRTK------V 73 (148)
Q Consensus 6 L~~E~~~l~~~-~~~~~~~~---~~~~~~~~w~~~i~gp~~t~y~gg~f~--~~i~~p~~yP~~pP~v~f~t~------i 73 (148)
..+|...+.+. +....... ....++..|.++|. .+|+|+.|. +.|.||++||++||.| |.++ .
T Consensus 25 t~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~ 99 (146)
T 3obq_A 25 TVRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIK 99 (146)
T ss_dssp HHHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEEC
T ss_pred hHHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEEC
Confidence 44566666553 22111111 23368999999997 579999988 5999999999999999 6655 5
Q ss_pred cCccccCCCceeccCccCCCCC-cCCHHHHHHHHHHhhcC
Q 032038 74 FHPNINSNGSICLDILKEQWSP-ALTISKVLLSICSLLTD 112 (148)
Q Consensus 74 ~Hpnv~~~G~icl~~l~~~W~p-~~~l~~il~~l~~ll~~ 112 (148)
.|||||.+|+||++.|.+ |++ +.+|.+++..|++.|.+
T Consensus 100 ~~~~Vd~~G~i~lpyL~~-W~~~~snL~~ll~~l~~~F~~ 138 (146)
T 3obq_A 100 TGKHVDANGKIYLPYLHE-WKHPQSDLLGLIQVMIVVFGD 138 (146)
T ss_dssp CBTTBCTTCBBCCHHHHT-CCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCEecccccc-cCCCCCCHHHHHHHHHHHHhh
Confidence 899999999999999954 988 67899999999999974
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.04 E-value=0.0079 Score=40.31 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEee
Q 032038 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT 71 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t 71 (148)
.+...|+..|+.--+..+.+ ..+....+.+.|....+..-+.-.+.+.+.+|++||.+||.+.+.+
T Consensus 13 e~q~~EleaL~sIy~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 13 EEQRNELEALESIYPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHCSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred HHHHHHHHHHHHHccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 45677888888744343433 2333456666665222222234578999999999999999998764
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.39 E-value=0.029 Score=37.45 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCCCCeeEeecC--CCcceeEEEEeCCCCCCC--CCCEEEEEEEcCCCCCCCCCeeEEeec
Q 032038 5 RILKELKDLQKDPPTSCSAGPVA--EDMFHWQATIMGPPDSPY--AGGVFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~--~~~~~w~~~i~gp~~t~y--~gg~f~~~i~~p~~yP~~pP~v~f~t~ 72 (148)
+...|+..|+.--+..+.+.... .+...+.+.|..+.+..- ..-.+.+.+.+|++||..+|.|...+.
T Consensus 12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 46778888887544444432111 123445555542222111 124788999999999999999988763
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.047 Score=36.92 Aligned_cols=66 Identities=12% Similarity=0.224 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCCCeeEeecC------CCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEee
Q 032038 5 RILKELKDLQKDPPTSCSAGPVA------EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT 71 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~------~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t 71 (148)
+-..|+..|+.--+..+.+.-.. .....+.+.|....+ .-..-.+.+.+.+|++||..||.|.+.+
T Consensus 14 ~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 14 IQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp HHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred HHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 35667777776433333321110 124567777763222 1123578899999999999999998764
No 59
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=95.76 E-value=0.17 Score=36.34 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCCCCeeEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCCCc
Q 032038 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~G~ 83 (148)
.+|.+|+.++-=+. +.-.+.++....+.+.. =.|..+.++|.++.+||.+||.+...-|. |.
T Consensus 4 ~~li~Ei~~iGW~~-----l~~id~~~~~i~l~~~D-----~~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~------ 65 (186)
T 3zqs_A 4 SSLIEEIGTLGWDK-----LVYADTCFSTIKLKAED-----ASGREHLITLKLKAKYPAESPDYFVDFPV--PF------ 65 (186)
T ss_dssp CSHHHHHHHHCGGG-----EEEECTTSSEEEEEEEC-----TTSCEEEEEEECCTTTTTSCCEEECCCSS--CC------
T ss_pred HHHHHHHHHhCCce-----eeeecCCccEEEEEEEe-----CCCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc------
Confidence 36777887773211 22335678888888873 34688999999999999999987654332 11
Q ss_pred eeccCccCCCCCcCCHHHHHHHHHHhhc
Q 032038 84 ICLDILKEQWSPALTISKVLLSICSLLT 111 (148)
Q Consensus 84 icl~~l~~~W~p~~~l~~il~~l~~ll~ 111 (148)
.-.|++..++.+++.+.+..+.
T Consensus 66 ------~~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 66 ------CASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp ------CCCCCTTCCHHHHHHHHHHHHH
T ss_pred ------ccccCCCccHHHHHHHHHHHHH
Confidence 1479999999988887776664
No 60
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.65 E-value=0.099 Score=34.84 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCCC--CeeE-eecCCCcceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEe
Q 032038 5 RILKELKDLQKDPPT--SCSA-GPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFR 70 (148)
Q Consensus 5 RL~~E~~~l~~~~~~--~~~~-~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~ 70 (148)
+...|+..|+.--.. .+.+ .....+...+.+.|.. .+..-..-.+.+.+.+|.+||..||.|...
T Consensus 11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 456677777763211 2322 1111234577777763 321111347999999999999999998754
No 61
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=95.48 E-value=0.098 Score=36.26 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEEEEcCCCCCCCCCeeEEee
Q 032038 49 VFLVTIHFPPDYPFKPPKVAFRT 71 (148)
Q Consensus 49 ~f~~~i~~p~~yP~~pP~v~f~t 71 (148)
.+.+.|.+|.+||..+|.|...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999998665
No 62
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=94.17 E-value=0.3 Score=32.74 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCCCCeeEeecCC-----CcceeEEEEeCCCCC--CCCCCEEEEEEEcCCCCCCCCCeeEEee
Q 032038 4 KRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDS--PYAGGVFLVTIHFPPDYPFKPPKVAFRT 71 (148)
Q Consensus 4 kRL~~E~~~l~~~~~~~~~~~~~~~-----~~~~w~~~i~gp~~t--~y~gg~f~~~i~~p~~yP~~pP~v~f~t 71 (148)
.+...|+..|+.--...+....... ......+.|. +.+. .-..-.+.+.+.||++||..+|.|...+
T Consensus 13 e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 13 QRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp HHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred HHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 3456788888764333333321111 1345556665 3221 0012468999999999999999998753
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.60 E-value=0.22 Score=34.19 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=21.6
Q ss_pred CEEEEEEEcCCCCCCCCCeeEEeec
Q 032038 48 GVFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 48 g~f~~~i~~p~~yP~~pP~v~f~t~ 72 (148)
-.+.+.+.+|.+||..||.|.....
T Consensus 73 ~~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 73 AMFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEEECSSTTSSCCCCEEECT
T ss_pred ceEEEEEECCCCCCCCCCeEEEEcc
Confidence 3688999999999999999987653
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=89.80 E-value=0.061 Score=35.32 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred cCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 111 TDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 111 ~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+......|.+.+.|+.|.++++.|.++|+.|+.-+|.
T Consensus 19 ~~~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~ 55 (108)
T 2cwb_A 19 KGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDAT 55 (108)
T ss_dssp -------------------------------------
T ss_pred cCcccCCchhHHHHHHHHhchhccccccccccccCcC
Confidence 3345667889999999999999999999999966663
No 65
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=80.14 E-value=1.3 Score=20.54 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhcCCCCCe
Q 032038 3 SKRILKELKDLQKDPPTSC 21 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~ 21 (148)
+.||+-|+..+|.+|+.|.
T Consensus 7 ldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 7 LDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHhhhccCCCCCC
Confidence 4689999999999998874
No 66
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=38.87 E-value=41 Score=20.21 Aligned_cols=42 Identities=12% Similarity=0.235 Sum_probs=32.4
Q ss_pred HHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 106 ICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 106 l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
|+.|+..-++...+.+++..+..+=-+.|...+-..+.+.|+
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAK 52 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLAR 52 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554446677889999999888889999998888877764
No 67
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=34.05 E-value=43 Score=19.21 Aligned_cols=20 Identities=5% Similarity=0.160 Sum_probs=17.8
Q ss_pred CcHHHHHHHHHCHHHHHHHH
Q 032038 119 LVPEIAHMYKTDRNKYETTA 138 (148)
Q Consensus 119 ~n~~a~~~~~~~~~~f~~~~ 138 (148)
.|++.+.+..+|+++|.+..
T Consensus 37 ~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 37 ENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp HCHHHHHHHHHSHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHH
Confidence 58899999999999998875
No 68
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=33.89 E-value=40 Score=24.25 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeeEEe
Q 032038 46 AGGVFLVTIHFPPDYPF-----KPPKVAFR 70 (148)
Q Consensus 46 ~gg~f~~~i~~p~~yP~-----~pP~v~f~ 70 (148)
+.|.|.|+-.+|--||. .||.|.|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 56899999999999998 78888775
No 69
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=31.47 E-value=44 Score=19.90 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=19.3
Q ss_pred CCcHHHHHHHHHCHHHHHHHHH
Q 032038 118 PLVPEIAHMYKTDRNKYETTAR 139 (148)
Q Consensus 118 ~~n~~a~~~~~~~~~~f~~~~~ 139 (148)
..|++.+.+..+|+++|.+...
T Consensus 38 ~~NPqL~q~I~~n~e~Fl~ll~ 59 (72)
T 1pve_A 38 RENPQLLQQISQHQEHFIQMLN 59 (72)
T ss_dssp TTCHHHHHHHHTTHHHHHHHHH
T ss_pred hHCHHHHHHHHHCHHHHHHHHc
Confidence 3689999999999999998874
No 70
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=31.02 E-value=24 Score=19.07 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCCCCCC-CcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 103 LLSICSLLTDPNPDDP-LVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 103 l~~l~~ll~~p~~~~~-~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
|..|..-+.+|+ +| .+..+....+.|+..-...+|.-+.+|++
T Consensus 3 LqqLl~tlksp~--sp~qqqqvl~ILksnPqLMAAfIkQR~~~y~~ 46 (47)
T 1zoq_C 3 LQDLLRTLKSPS--SPQQQQQVLNILKSNPQLMAAFIKQRTAKYVA 46 (47)
T ss_dssp HHHHHHTCCSCC--CHHHHHHHHHHHHTCHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcc
Confidence 344444555554 33 45667788999999888888888877765
No 71
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=27.54 E-value=62 Score=22.91 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=34.4
Q ss_pred CEEEEEEEcCCCCCCCCCeeEEeecc--cCccccCCCceeccCccCCCCCcCCHHHHHHHH
Q 032038 48 GVFLVTIHFPPDYPFKPPKVAFRTKV--FHPNINSNGSICLDILKEQWSPALTISKVLLSI 106 (148)
Q Consensus 48 g~f~~~i~~p~~yP~~pP~v~f~t~i--~Hpnv~~~G~icl~~l~~~W~p~~~l~~il~~l 106 (148)
....+.|.+....|...|.++|..+- -+|.-. +++--...|.+..++.+=|..|
T Consensus 124 ~~vsl~i~vdP~~P~~lPe~~FlG~~~~v~~lr~-----~~~~nl~~Wd~~~~i~~NL~~i 179 (186)
T 3zqs_A 124 NNVSINIEVDPRHPTMLPECFFLGADHVVKPLGI-----KLSRNIHLWDPENSVLQNLKDV 179 (186)
T ss_dssp TTEEEEEECCTTSTTSCCEEEEEECHHHHHHHHH-----HHHHHGGGCCTTSCHHHHHHHH
T ss_pred CCcEEEEEECCCCCCcCCceEEECChHHHHHHHH-----HHhhhHhhcCCCCCHHHHHHHH
Confidence 44678899999999999999998651 111100 1110015799999876655544
No 72
>3s7v_A Major capsid protein VP1; jelly-roll, antiparallel beta sandwich, major capsid protein protein; 2.55A {Ki polyomavirus} PDB: 3s7x_A
Probab=27.30 E-value=1.3e+02 Score=22.45 Aligned_cols=24 Identities=33% Similarity=0.761 Sum_probs=20.0
Q ss_pred CCCeeEEeecccCccccCCCc--eec
Q 032038 63 KPPKVAFRTKVFHPNINSNGS--ICL 86 (148)
Q Consensus 63 ~pP~v~f~t~i~Hpnv~~~G~--icl 86 (148)
.||.+.|....-.+..|++|. +|.
T Consensus 214 TPPVl~ftNt~TTvLLDENGVGpLCk 239 (277)
T 3s7v_A 214 TPPVVSYGNNSTIPLLDENGIGILCL 239 (277)
T ss_dssp CCCEEEEESSCCEECCCTTSCCEECT
T ss_pred CCCeEEecCceeEEEEcCCCcccccc
Confidence 699999998888889998764 775
No 73
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=27.22 E-value=16 Score=16.79 Aligned_cols=16 Identities=31% Similarity=0.785 Sum_probs=8.4
Q ss_pred CCCCCeeEEeecccCc
Q 032038 61 PFKPPKVAFRTKVFHP 76 (148)
Q Consensus 61 P~~pP~v~f~t~i~Hp 76 (148)
|...|.-.|..+-|||
T Consensus 4 pmtlpenyfserpyhp 19 (26)
T 2jrw_A 4 PMTLPENYFSERPYHP 19 (26)
T ss_dssp CCCCSSSSCCSSSCCS
T ss_pred ccccchhhcccCCCCC
Confidence 3344444455556665
No 74
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=25.93 E-value=94 Score=17.42 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=8.9
Q ss_pred EEEEcCCCCCC
Q 032038 52 VTIHFPPDYPF 62 (148)
Q Consensus 52 ~~i~~p~~yP~ 62 (148)
|+-.+|++||.
T Consensus 46 fR~k~pddy~~ 56 (56)
T 3kxt_A 46 FRHKLPDDYPI 56 (56)
T ss_dssp EEEECCTTCCC
T ss_pred eeeeCcCcCCC
Confidence 56788999984
No 75
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=24.52 E-value=1e+02 Score=17.39 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=32.4
Q ss_pred HHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 032038 103 LLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 147 (148)
Q Consensus 103 l~~l~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
|..|..-+.+|. ..-.+..+....+.|+..-...+|..+.+|.+
T Consensus 10 LqqLl~tlksp~-speqqqqvl~ILksNPqLMAAfIKQR~~~~~~ 53 (59)
T 1kbh_B 10 LQDLLRTLKSPS-SPQQQQQVLNILKSNPQLMAAFIKQRTAKYVA 53 (59)
T ss_dssp HHHHHHHHHSCT-TTTCSTHHHHHHTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhc
Confidence 444555556665 33357788899999999988888888888765
No 76
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=24.48 E-value=27 Score=23.57 Aligned_cols=30 Identities=30% Similarity=0.542 Sum_probs=23.6
Q ss_pred CCCeeEEe---ecccCccccCCCceeccCccCC
Q 032038 63 KPPKVAFR---TKVFHPNINSNGSICLDILKEQ 92 (148)
Q Consensus 63 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 92 (148)
.||.|.+. +.--|++|..+|.+|+++|.++
T Consensus 43 ~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~ 75 (157)
T 3pft_A 43 EPPLVAFAVQNSSTTWPKLKDLPSLGISVLGEA 75 (157)
T ss_dssp TTTEEEEEEETTCSSHHHHTTSSCEEEEECBTT
T ss_pred CCcEEEEEECCCCchHHHHHhCCEEEEEECCHH
Confidence 68988884 3345889999999999999643
No 77
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=23.55 E-value=54 Score=17.08 Aligned_cols=13 Identities=46% Similarity=0.639 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhc
Q 032038 3 SKRILKELKDLQK 15 (148)
Q Consensus 3 ~kRL~~E~~~l~~ 15 (148)
.+|+..|++++.+
T Consensus 30 ~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 30 IKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 5899999998753
No 78
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=22.95 E-value=65 Score=26.60 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=22.1
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhh
Q 032038 121 PEIAHMYKTDRNKYETTARSWTQKYA 146 (148)
Q Consensus 121 ~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+..+..+|+++|.+.|++..+++.
T Consensus 278 ee~~~l~~~dp~~~~~~~~~Sm~rhv 303 (552)
T 2fkn_A 278 DEADRLRQDTPELYVRLAKQSMKKHV 303 (552)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 46777889999999999999988764
No 79
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=22.79 E-value=65 Score=26.56 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.1
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhh
Q 032038 121 PEIAHMYKTDRNKYETTARSWTQKYA 146 (148)
Q Consensus 121 ~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+..+..+|+++|.+.|++..+++.
T Consensus 277 ee~~~l~~~dp~~~~~~~~~Sm~rhv 302 (551)
T 1x87_A 277 DEAAELRARDPKQYIARAKQSIAAHV 302 (551)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 46777889999999999999988764
No 80
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=22.46 E-value=67 Score=26.54 Aligned_cols=26 Identities=8% Similarity=-0.041 Sum_probs=22.1
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhh
Q 032038 121 PEIAHMYKTDRNKYETTARSWTQKYA 146 (148)
Q Consensus 121 ~~a~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+..+..+|+++|.+.|++..+++.
T Consensus 282 ee~~~l~~~dp~~~~~~~~~Sm~rhv 307 (557)
T 1uwk_A 282 EQYRDRAQTEPAAVVKAAKQSMAVHV 307 (557)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 46777889999999999999988764
No 81
>1sid_A Polyomavirus coat protein VP1; icosahedral virus; HET: SIA GAL BGC; 3.65A {Mouse polyomavirus} SCOP: b.121.6.1 PDB: 1sie_A*
Probab=21.46 E-value=1.6e+02 Score=22.99 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=18.9
Q ss_pred CCCeeEEeecccCccccCCCc--eec
Q 032038 63 KPPKVAFRTKVFHPNINSNGS--ICL 86 (148)
Q Consensus 63 ~pP~v~f~t~i~Hpnv~~~G~--icl 86 (148)
.||.+.|....-.+..|+||. +|.
T Consensus 249 TPPVlqftNt~TTvLLDENGVGpLCk 274 (383)
T 1sid_A 249 TPPVLQFTNTLTTVLLDENGVGPLCK 274 (383)
T ss_dssp CCCEEEEESSCEEECCCTTSCCCBCS
T ss_pred CCCeEEeccceeEEEEcCCCcccccc
Confidence 599999988777888888763 664
No 82
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=21.40 E-value=1.4e+02 Score=18.64 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=18.7
Q ss_pred CCEEEEEEEcCCCCCCCCCeeEEe
Q 032038 47 GGVFLVTIHFPPDYPFKPPKVAFR 70 (148)
Q Consensus 47 gg~f~~~i~~p~~yP~~pP~v~f~ 70 (148)
+..+...|.|+..|+. +|+|.+.
T Consensus 28 ~R~~~~~V~F~~~F~~-~P~V~v~ 50 (101)
T 2ccv_A 28 TRELAKNITFASPYCR-PPVVLLS 50 (101)
T ss_dssp CEEEEEEEECSSCCSS-CCEEEEE
T ss_pred ceEEEEEeEeCcccCC-CCEEEEE
Confidence 3468888999999995 8999874
No 83
>1vps_A Polyomavirus VP1 pentamer; virus coat protein, oligosaccharide binding, virus assembly, acid, viral protein; HET: SIA GAL NAG; 1.90A {Murine polyomavirus} SCOP: b.121.6.1 PDB: 1vpn_A* 1cn3_A
Probab=21.33 E-value=2.1e+02 Score=21.49 Aligned_cols=24 Identities=25% Similarity=0.629 Sum_probs=19.6
Q ss_pred CCCeeEEeecccCccccCCC--ceec
Q 032038 63 KPPKVAFRTKVFHPNINSNG--SICL 86 (148)
Q Consensus 63 ~pP~v~f~t~i~Hpnv~~~G--~icl 86 (148)
.||.+.|....-.+..|++| -+|.
T Consensus 218 TPpvl~ftNt~TtvLldEnGvGpLCk 243 (289)
T 1vps_A 218 TPPVLQFTNTLTTVLLDENGVGPLCK 243 (289)
T ss_dssp CCCEEEEESSCCEECCCTTSCCCEES
T ss_pred CCCeEEecCceeEEEEcCCCcccccc
Confidence 59999998888888899875 4775
No 84
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=20.54 E-value=1.7e+02 Score=20.19 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=27.7
Q ss_pred CcceeEEEEeCCCCC-------------CCCCCEEEEEEEcCCCCCCCCCe
Q 032038 29 DMFHWQATIMGPPDS-------------PYAGGVFLVTIHFPPDYPFKPPK 66 (148)
Q Consensus 29 ~~~~w~~~i~gp~~t-------------~y~gg~f~~~i~~p~~yP~~pP~ 66 (148)
+-.+|+++-.|..++ |..-|.++|.+.-+.-.|.+-|.
T Consensus 36 ~dlewkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd~~~IP~ 86 (161)
T 2cu9_A 36 SDLEWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPPNIDLLPQ 86 (161)
T ss_dssp SCEEEEEEEESSTTSCCCEEEEEEEEECSCCSEEEEEEEEECCCCGGGSSC
T ss_pred CCeEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEcCCCChhHCCC
Confidence 445898888885443 56778999998887767776666
No 85
>4fmh_A VP1; viral capsid protein, jelly roll, encapsidation, receptor BI sialylated oligosaccharides, viral protein; HET: SIA GAL; 1.85A {Merkel cell polyomavirus} PDB: 4fmg_A* 4fmi_A* 4fmj_A*
Probab=20.20 E-value=1.8e+02 Score=21.88 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=27.6
Q ss_pred CCCCCCCEEEEEEEcCCCCCCCCCeeEEeecccCccccCCCc--eec
Q 032038 42 DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGS--ICL 86 (148)
Q Consensus 42 ~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~G~--icl 86 (148)
-+.=|...|..++.=.. ..||.+.|....-.+..|+||. +|.
T Consensus 204 PsrNENtRYFG~~tGG~---~TPPVl~ftNt~TTvLLDENGVGpLCk 247 (289)
T 4fmh_A 204 PSKNENSRYYGSIQTGS---QTPTVLQFSNTLTTVLLDENGVGPLCK 247 (289)
T ss_dssp TTSCTTEEEEEEEECSS---SCCCEEEEETTCCEECCCTTSCCCBCG
T ss_pred CCcCcCceeeeEecCCC---CCCCeEEecCceeEEEEcCCCccccee
Confidence 33344555555544333 3699999988877888998764 775
No 86
>1b33_N Phycobilisome 7.8 KD linker polypeptide; light-harvesting protein, cyanobacteria, allophycocyanin, linker polypeptides; HET: BLA CYC; 2.30A {Mastigocladus laminosus} SCOP: d.30.1.1
Probab=20.19 E-value=84 Score=18.41 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCCCCeeEeecCCC
Q 032038 3 SKRILKELKDLQKDPPTSCSAGPVAED 29 (148)
Q Consensus 3 ~kRL~~E~~~l~~~~~~~~~~~~~~~~ 29 (148)
..|+..|++++++....-+++.|..++
T Consensus 33 y~rms~emQrI~r~GGkIvSItp~~~~ 59 (67)
T 1b33_N 33 YENWFREQQRIQKMGGKIVKVELATGK 59 (67)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETTCC
T ss_pred HHHHhHHHHHHHHcCCeEEEEEECCCC
Confidence 368999999999998877788777643
Done!