BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032039
MGKTKKDLLTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDD
NDDLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFFGKF
DFGEHYWELGRWKMNDFMHRSKFQPNKL

High Scoring Gene Products

Symbol, full name Information P value
AT1G33810 protein from Arabidopsis thaliana 1.1e-25

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032039
        (148 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2012688 - symbol:AT1G33810 "AT1G33810" species...   291  1.1e-25   1


>TAIR|locus:2012688 [details] [associations]
            symbol:AT1G33810 "AT1G33810" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009507 "chloroplast" evidence=IDA] [GO:0045036 "protein
            targeting to chloroplast" evidence=RCA] [GO:0009536 "plastid"
            evidence=IDA] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009941
            GO:GO:0009535 EMBL:AY088347 EMBL:BT005025 EMBL:AK117437
            EMBL:AK229107 IPI:IPI00543544 RefSeq:NP_564429.1 UniGene:At.39872
            IntAct:Q8L9M8 STRING:Q8L9M8 PaxDb:Q8L9M8 PRIDE:Q8L9M8
            EnsemblPlants:AT1G33810.1 GeneID:840273 KEGG:ath:AT1G33810
            TAIR:At1g33810 eggNOG:NOG307987 HOGENOM:HOG000242546
            InParanoid:Q8L9M8 OMA:FTQFFDP PhylomeDB:Q8L9M8
            ProtClustDB:CLSN2688249 Genevestigator:Q8L9M8 Uniprot:Q8L9M8
        Length = 138

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 66/119 (55%), Positives = 75/119 (63%)

Query:     1 MGKTKKDLLTKAPWRXXXXXXXXXXXXXXXLKVTREPGATPTMHVPRK--VKGSRYXXXX 58
             M K KK+LL+KAPWR               LKVT++      MHVP +   KGS      
Sbjct:     1 MAK-KKELLSKAPWRGDDEDDSDKFSNAK-LKVTKDSDGMSKMHVPSRGTKKGS---LAD 55

Query:    59 XXXXXXXXXPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFFTRIFTQFF 117
                      PQLRYSF RNYQFLQ VF+IDT+VKPLPP+MA+NVSRNLSFFTRIFTQFF
Sbjct:    56 DDDDSLEIDPQLRYSFNRNYQFLQSVFTIDTLVKPLPPSMAFNVSRNLSFFTRIFTQFF 114


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.139   0.448    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      148       120   0.00091  102 3  11 22  0.43    30
                                                     29  0.48    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  543 (58 KB)
  Total size of DFA:  130 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.92u 0.12s 10.04t   Elapsed:  00:00:00
  Total cpu time:  9.92u 0.12s 10.04t   Elapsed:  00:00:00
  Start:  Fri May 10 12:25:52 2013   End:  Fri May 10 12:25:52 2013

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