BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032039
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q12KG8|TYSY_SHEDO Thymidylate synthase OS=Shewanella denitrificans (strain OS217 /
ATCC BAA-1090 / DSM 15013) GN=thyA PE=3 SV=1
Length = 264
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 14 WRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRK 48
W GG ++ + KL+++REP A P M++ RK
Sbjct: 201 WTGGDTHLYSNHMEQTKLQLSREPHALPQMNILRK 235
>sp|Q603S2|TYSY_METCA Thymidylate synthase OS=Methylococcus capsulatus (strain ATCC 33009
/ NCIMB 11132 / Bath) GN=thyA PE=3 SV=1
Length = 260
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 14 WRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDD--NDDLQLDPQLR 71
W GG + + A+L++TREP PT+ + RK GS +D +D +D Q P ++
Sbjct: 197 WCGGDVHLYLNHLEQARLQLTREPYPPPTLKLARK-PGSLFDYRYEDFVVEDYQAHPHIK 255
Query: 72 YS 73
+
Sbjct: 256 AA 257
>sp|A4VGL9|TYSY_PSEU5 Thymidylate synthase OS=Pseudomonas stutzeri (strain A1501) GN=thyA
PE=3 SV=2
Length = 264
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 14 WRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVK 50
W GG A+ + A L++TREP PTM + +VK
Sbjct: 201 WSGGDCHLYANHLEQADLQLTREPLPLPTMKLNPEVK 237
>sp|Q8UDS3|TYSY_AGRT5 Thymidylate synthase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=thyA PE=3 SV=2
Length = 264
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 23 ADKFKDAKLKVTREPGATPTMHVPRKVK---GSRYDDVDDDN 61
A+ F+ A+L++TR P A PTM + VK G +++D +N
Sbjct: 210 ANHFEQAQLQMTRTPKALPTMRLNPDVKNLFGFKFEDFTLEN 251
>sp|Q8BIE6|FRM4A_MOUSE FERM domain-containing protein 4A OS=Mus musculus GN=Frmd4a PE=1
SV=2
Length = 1020
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 9 LTKAPWRGGGDDDEADKFKDAKLKVTREP 37
L K WRGGGD+ +A + ++ ++ R P
Sbjct: 860 LFKESWRGGGDEGDAGRLTPSRSQILRTP 888
>sp|Q75B91|EXO84_ASHGO Exocyst complex component EXO84 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=EXO84
PE=3 SV=2
Length = 697
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 37 PGATPTMHVPRKVKGSRYDDVDDDNDDLQLDPQLRYSFQRNY-QFLQRVFSIDTVVKPLP 95
PG T P K+K + Y+D D LQL P++ +R +QR S+ K +P
Sbjct: 19 PGKTRQQGSPTKLKSNAYEDFVSPRDTLQL-PEIGMKDRRKVGTSMQRRLSVHN-AKYIP 76
Query: 96 PAMAY 100
P + Y
Sbjct: 77 PPIDY 81
>sp|Q7N8U4|TYSY_PHOLL Thymidylate synthase OS=Photorhabdus luminescens subsp. laumondii
(strain TT01) GN=thyA PE=3 SV=1
Length = 264
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 14 WRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDDNDDLQLDPQ 69
W GG ++ + KL+++REP + P + + RK S +D DD + + DP
Sbjct: 201 WTGGDTHLYSNHMEQTKLQLSREPRSLPKLVIKRK-PASLFDYKFDDFEIVDYDPH 255
>sp|Q3V209|TMUB2_MOUSE Transmembrane and ubiquitin-like domain-containing protein 2 OS=Mus
musculus GN=Tmub2 PE=1 SV=1
Length = 319
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 10 TKAPWRGGGDDDEADKFKDAKLKVTREPGA 39
T+ P GG+DD+A++ D+ T EPGA
Sbjct: 96 TEHPHPSGGNDDKAEETSDSGGDATGEPGA 125
>sp|A7MR31|TYSY_CROS8 Thymidylate synthase OS=Cronobacter sakazakii (strain ATCC BAA-894)
GN=thyA PE=3 SV=1
Length = 264
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 14 WRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRK 48
W GG ++ + A+L++TREP P + + RK
Sbjct: 201 WTGGDTHLYSNHLEQARLQLTREPRPLPKLVIKRK 235
>sp|Q1LK81|TYSY_RALME Thymidylate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC
43123 / DSM 2839) GN=thyA PE=3 SV=1
Length = 264
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 14 WRGGGDDDEADKFKDAKLKVTREPGATPTM---HVPRKVKGSRYDDVD 58
W GG ++ F+ + +++REP PT+ H P + +YDD +
Sbjct: 201 WTGGDCHIYSNHFEQVETQLSREPMKLPTLRIKHRPDSIFDYKYDDFE 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,362,558
Number of Sequences: 539616
Number of extensions: 2428476
Number of successful extensions: 5967
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 5953
Number of HSP's gapped (non-prelim): 29
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)