Query 032039
Match_columns 148
No_of_seqs 18 out of 20
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 08:46:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09933 DUF2165: Predicted sm 48.7 10 0.00023 30.1 1.4 17 74-90 29-45 (160)
2 COG5472 Predicted small integr 37.1 4.4 9.6E-05 33.1 -2.3 18 74-91 29-46 (164)
3 COG1460 Uncharacterized protei 29.8 42 0.00092 26.0 2.1 24 65-88 26-49 (114)
4 PF15366 DUF4597: Domain of un 28.4 55 0.0012 23.3 2.3 32 36-69 29-62 (62)
5 KOG2178 Predicted sugar kinase 26.9 31 0.00068 31.7 1.1 31 92-131 190-220 (409)
6 PF14770 TMEM18: Transmembrane 21.6 30 0.00064 26.5 -0.1 18 103-122 63-80 (123)
7 PF00525 Crystallin: Alpha cry 20.3 30 0.00064 24.3 -0.3 15 108-123 19-33 (59)
8 cd03721 SOCS_ASB2 SOCS (suppre 18.5 1.1E+02 0.0024 19.7 2.0 26 71-99 11-36 (45)
9 cd01137 PsaA Metal binding pro 16.6 66 0.0014 26.3 0.9 32 65-96 139-175 (287)
10 cd05135 RasGAP_RASAL Ras GTPas 14.7 1.7E+02 0.0036 25.5 2.9 33 68-100 141-175 (333)
No 1
>PF09933 DUF2165: Predicted small integral membrane protein (DUF2165); InterPro: IPR018681 This family of various hypothetical prokaryotic proteins has no known function.
Probab=48.71 E-value=10 Score=30.14 Aligned_cols=17 Identities=41% Similarity=0.856 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhccccc
Q 032039 74 FQRNYQFLQRVFSIDTV 90 (148)
Q Consensus 74 FqRNfQFLqRvfsidt~ 90 (148)
|.=|+||+|.|+|.||.
T Consensus 29 y~sN~~fV~hVlsMdt~ 45 (160)
T PF09933_consen 29 YGSNFQFVRHVLSMDTT 45 (160)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 56799999999999988
No 2
>COG5472 Predicted small integral membrane protein [Function unknown]
Probab=37.13 E-value=4.4 Score=33.11 Aligned_cols=18 Identities=33% Similarity=0.816 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhcccccc
Q 032039 74 FQRNYQFLQRVFSIDTVV 91 (148)
Q Consensus 74 FqRNfQFLqRvfsidt~v 91 (148)
|+-||||++-|+|.||+.
T Consensus 29 yntNfvFV~HVlSMDT~f 46 (164)
T COG5472 29 YNTNFVFVHHVLSMDTIF 46 (164)
T ss_pred cccceEeeeeeeeccccC
Confidence 678999999999999983
No 3
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.75 E-value=42 Score=25.99 Aligned_cols=24 Identities=13% Similarity=0.412 Sum_probs=20.8
Q ss_pred CCChhhHHHHHHHHHHHHHhhccc
Q 032039 65 QLDPQLRYSFQRNYQFLQRVFSID 88 (148)
Q Consensus 65 EIDPeLRysFqRNfQFLqRvfsid 88 (148)
+.|+||+|.++||..+++++=.+|
T Consensus 26 ~~~~eL~y~~~~al~y~~kFakld 49 (114)
T COG1460 26 EREEELTYEQREALEYAEKFAKLD 49 (114)
T ss_pred cccccchHHHHHHHHHHHHHhcCC
Confidence 679999999999999999876544
No 4
>PF15366 DUF4597: Domain of unknown function (DUF4597)
Probab=28.45 E-value=55 Score=23.32 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=17.8
Q ss_pred cCCCCCeeeecCCCCCCCC--CCCCCCCCCCCCChh
Q 032039 36 EPGATPTMHVPRKVKGSRY--DDVDDDNDDLQLDPQ 69 (148)
Q Consensus 36 qpg~t~TM~vP~~~k~~~~--~~~d~~d~~~EIDPe 69 (148)
-|--|. |.+||. .++.. +....-.||.|||||
T Consensus 29 PPTPTg-~~lpRD-s~~~vwlDe~gs~~dD~e~dpE 62 (62)
T PF15366_consen 29 PPTPTG-MMLPRD-SRRTVWLDETGSCPDDGELDPE 62 (62)
T ss_pred CCCCCc-eecccc-cCcceecccccCCCCccccCCC
Confidence 344444 449988 43221 333344556699997
No 5
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=26.90 E-value=31 Score=31.72 Aligned_cols=31 Identities=29% Similarity=0.731 Sum_probs=24.7
Q ss_pred ccCCchhhhhhccccchhhhhhhhccCCcchhhhhhhhhh
Q 032039 92 KPLPPAMAYNVSRNLSFFTRIFTQFFGKFDFGEHYWELGR 131 (148)
Q Consensus 92 kpLPp~ma~nvsRNl~FFtriFTQFfd~~Gi~~~~~siG~ 131 (148)
++.||+|++++. -|||.| +--++|.|+.|-+
T Consensus 190 ~~VPPV~sFslG-slGFLt--------pf~f~~f~~~l~~ 220 (409)
T KOG2178|consen 190 RSVPPVLSFSLG-SLGFLT--------PFPFANFQEQLAR 220 (409)
T ss_pred CCCCCeEEeecC-Cccccc--------cccHHHHHHHHHH
Confidence 568999999999 899988 4467777777644
No 6
>PF14770 TMEM18: Transmembrane protein 18
Probab=21.59 E-value=30 Score=26.48 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=13.0
Q ss_pred ccccchhhhhhhhccCCcch
Q 032039 103 SRNLSFFTRIFTQFFGKFDF 122 (148)
Q Consensus 103 sRNl~FFtriFTQFfd~~Gi 122 (148)
++|-.-|.+- ||||+.|+
T Consensus 63 a~nW~~Fs~q--nYFDs~G~ 80 (123)
T PF14770_consen 63 ARNWRSFSKQ--NYFDSSGV 80 (123)
T ss_pred HHHHHHHhhc--cCcCCCCe
Confidence 4565556554 99999995
No 7
>PF00525 Crystallin: Alpha crystallin A chain, N terminal; InterPro: IPR003090 The crystallins are water-soluble structural proteins that occur in high concentration in the cytoplasm of eye lens fibre cells. Four major groups of crystallin have been distinguished on the basis of size, charge and immunological properties: alpha-, beta- and gamma-crystallins occur in all vertebrate classes (though gamma-crystallins are low or absent in avian lenses); and delta-crystallin is found exclusively in reptiles and birds [, ]. Alpha-crystallin occurs as large aggregates, comprising two types of related subunits (A and B) that are highly similar to the small (15-30kDa) heat shock proteins (HSPs), particularly in their C-terminal halves. The relationship between these families is one of classic gene duplication and divergence, from the small HSP family, allowing adaptation to novel functions. Divergence probably occurred prior to evolution of the eye lens, alpha-crystallin being found in small amounts in tissues outside the lens []. Alpha-crystallin has chaperone-like properties including the ability to prevent the precipitation of denatured proteins and to increase cellular tolerance to stress []. It has been suggested that these functions are important for the maintenance of lens transparency and the prevention of cataracts. This is supported by the observation that alpha-crystallin mutations show an association with cataract formation. This entry represents the N-terminal domain of alpha-crystallin. It is not necessary for dimerisation or chaperone activity, but appears to be required for the formation of higher order aggregates [, ].; GO: 0005212 structural constituent of eye lens; PDB: 2YGD_P.
Probab=20.31 E-value=30 Score=24.29 Aligned_cols=15 Identities=47% Similarity=0.591 Sum_probs=10.5
Q ss_pred hhhhhhhhccCCcchh
Q 032039 108 FFTRIFTQFFGKFDFG 123 (148)
Q Consensus 108 FFtriFTQFfd~~Gi~ 123 (148)
+=+|||.|+|. ||+.
T Consensus 19 ~PsRiFDQ~FG-EgL~ 33 (59)
T PF00525_consen 19 FPSRIFDQNFG-EGLF 33 (59)
T ss_dssp -SCHHHCTTSE-ESST
T ss_pred CchhhHHHhhc-cccC
Confidence 34799999996 4543
No 8
>cd03721 SOCS_ASB2 SOCS (suppressors of cytokine signaling) box of ASB2-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB2 targets specific proteins to destruction by the proteasome in leukemia cells that have been induced to differentiate. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=18.45 E-value=1.1e+02 Score=19.69 Aligned_cols=26 Identities=35% Similarity=0.600 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhccccccccCCchhh
Q 032039 71 RYSFQRNYQFLQRVFSIDTVVKPLPPAMA 99 (148)
Q Consensus 71 RysFqRNfQFLqRvfsidt~vkpLPp~ma 99 (148)
|++.++.+.. ++.-.|+.+ |||+.+.
T Consensus 11 Rl~IR~~lg~-~~l~~I~~L--~LP~~Lk 36 (45)
T cd03721 11 RLKVRTLIGI-NRIKLIDTL--PLPPRLI 36 (45)
T ss_pred HHHHHHHHhH-HhhccCccC--CCCHHHH
Confidence 6777777776 555578777 8998764
No 9
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=16.61 E-value=66 Score=26.30 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=24.8
Q ss_pred CCChhhHHHHHHHHH-HHHHhhcccc----ccccCCc
Q 032039 65 QLDPQLRYSFQRNYQ-FLQRVFSIDT----VVKPLPP 96 (148)
Q Consensus 65 EIDPeLRysFqRNfQ-FLqRvfsidt----~vkpLPp 96 (148)
++||+-+=.|+.|++ |+++.-.++. .++++|.
T Consensus 139 ~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~~~~~ 175 (287)
T cd01137 139 EADPANAETYQKNAAAYKAKLKALDEWAKAKFATIPA 175 (287)
T ss_pred HHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 889999999999998 5565555555 6777765
No 10
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=14.72 E-value=1.7e+02 Score=25.50 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHH-HHHHhh-ccccccccCCchhhh
Q 032039 68 PQLRYSFQRNYQ-FLQRVF-SIDTVVKPLPPAMAY 100 (148)
Q Consensus 68 PeLRysFqRNfQ-FLqRvf-sidt~vkpLPp~ma~ 100 (148)
||.|=.+-+|.+ +++.++ +|-.-+.-+|+.|+|
T Consensus 141 ~e~~e~~i~~L~~~~~~~~~~I~~S~~~~P~~lR~ 175 (333)
T cd05135 141 EEVRESSLEMLQGYLSSITDAIVGSVSQCPPVMRL 175 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhCCHHHHH
Confidence 355544555555 344444 355556678988876
Done!