Query 032039
Match_columns 148
No_of_seqs 18 out of 20
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 14:02:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4abo_I MAL3, microtubule integ 38.9 15 0.00052 28.1 2.1 53 65-118 52-106 (145)
2 2qjx_A Protein BIM1; calponin 34.8 21 0.00072 26.4 2.2 54 65-119 56-111 (127)
3 3ukn_A Novel protein similar t 33.4 57 0.002 22.6 4.2 45 65-109 29-76 (212)
4 2r8u_A Microtubule-associated 28.1 29 0.001 28.6 2.2 53 65-118 62-116 (268)
5 3mfq_A TROA, high-affinity zin 23.6 52 0.0018 25.6 2.8 48 65-112 125-179 (282)
6 1xnl_A ASLV/FP, membrane prote 23.4 26 0.0009 20.9 0.8 16 110-126 4-19 (29)
7 3en2_A Probable primosomal rep 19.4 9.3 0.00032 27.0 -2.1 7 67-73 14-20 (101)
8 3k8a_A Putative primosomal rep 17.2 11 0.00038 26.2 -2.1 7 67-73 19-25 (103)
9 3fhw_A Primosomal replication 16.7 12 0.00041 26.9 -2.1 7 67-73 13-19 (115)
10 4fx0_A Probable transcriptiona 14.7 43 0.0015 22.9 0.5 33 97-129 6-38 (148)
No 1
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=38.89 E-value=15 Score=28.08 Aligned_cols=53 Identities=23% Similarity=0.442 Sum_probs=37.4
Q ss_pred CCChhhHHHHHHHHHHHHHhhccccccccCCch--hhhhhccccchhhhhhhhccC
Q 032039 65 QLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPA--MAYNVSRNLSFFTRIFTQFFG 118 (148)
Q Consensus 65 EIDPeLRysFqRNfQFLqRvfsidt~vkpLPp~--ma~nvsRNl~FFtriFTQFfd 118 (148)
..++.+.|.|.+||.-||.+|.=-.+=|++|-. +.-..-.||-|. .-|-.|||
T Consensus 52 kf~a~~e~e~i~NfKlLQ~~F~k~~I~k~ipV~kLvKgk~QDNlEFl-QWfkkf~d 106 (145)
T 4abo_I 52 NFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFV-QWAKRFWD 106 (145)
T ss_dssp CSSCCSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTTCHHHHHHHH-HHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccchHhHHHHH-HHHHHHHH
Confidence 567888999999999999999776777777743 444555677642 33444444
No 2
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=34.78 E-value=21 Score=26.39 Aligned_cols=54 Identities=24% Similarity=0.462 Sum_probs=37.9
Q ss_pred CCChhhHHHHHHHHHHHHHhhccccccccCCch--hhhhhccccchhhhhhhhccCC
Q 032039 65 QLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPA--MAYNVSRNLSFFTRIFTQFFGK 119 (148)
Q Consensus 65 EIDPeLRysFqRNfQFLqRvfsidt~vkpLPp~--ma~nvsRNl~FFtriFTQFfd~ 119 (148)
..++..-|.|.+||.-||.+|.=-.+-+++|-. +.-..-.||-|. .-|-.|||.
T Consensus 56 kf~a~~e~e~~~N~k~LQ~~f~k~~I~k~ipV~kLvKgrfQDNlEFl-QWfkkf~d~ 111 (127)
T 2qjx_A 56 KFNATAEYEFQTNYKILQSCFSRHGIEKTVYVDKLIRCKFQDNLEFL-QWLKKHWIR 111 (127)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHTTTCHHHHHHHH-HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccCchhHHHHH-HHHHHHHHh
Confidence 455667799999999999999777777777753 444455677653 345666653
No 3
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=33.42 E-value=57 Score=22.57 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=35.8
Q ss_pred CCChhhHHHHHHHHHHH---HHhhccccccccCCchhhhhhccccchh
Q 032039 65 QLDPQLRYSFQRNYQFL---QRVFSIDTVVKPLPPAMAYNVSRNLSFF 109 (148)
Q Consensus 65 EIDPeLRysFqRNfQFL---qRvfsidt~vkpLPp~ma~nvsRNl~FF 109 (148)
.|+++||..-.+-|++. ++.+..+.++.-||+.+...+...+.-.
T Consensus 29 ~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~ 76 (212)
T 3ukn_A 29 RLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKE 76 (212)
T ss_dssp TCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCG
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHH
Confidence 78999999888888877 4455668899999999998887766543
No 4
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=28.14 E-value=29 Score=28.63 Aligned_cols=53 Identities=25% Similarity=0.447 Sum_probs=37.4
Q ss_pred CCChhhHHHHHHHHHHHHHhhccccccccCCch--hhhhhccccchhhhhhhhccC
Q 032039 65 QLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPA--MAYNVSRNLSFFTRIFTQFFG 118 (148)
Q Consensus 65 EIDPeLRysFqRNfQFLqRvfsidt~vkpLPp~--ma~nvsRNl~FFtriFTQFfd 118 (148)
.+++.+.|-|.+||.-||.+|.=-.+=|++|-. +....-.||-|. .-|-.|||
T Consensus 62 kf~a~~e~e~i~N~k~LQ~~F~k~~I~k~ipV~kLvkgk~qDNlEFl-qWfkkf~d 116 (268)
T 2r8u_A 62 KFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFV-QWFKKFFD 116 (268)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHTTTCHHHHHHHH-HHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccCchhHHHHH-HHHHHHHH
Confidence 578889999999999999999776777777753 344455676542 33444444
No 5
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=23.57 E-value=52 Score=25.62 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=31.1
Q ss_pred CCChhhHHHHHHHHH-HHHHhhcccc----ccccCCchhhhhhc--cccchhhhh
Q 032039 65 QLDPQLRYSFQRNYQ-FLQRVFSIDT----VVKPLPPAMAYNVS--RNLSFFTRI 112 (148)
Q Consensus 65 EIDPeLRysFqRNfQ-FLqRvfsidt----~vkpLPp~ma~nvs--RNl~FFtri 112 (148)
++||+-+=.|+.|++ |+++.=.+|. .+.++|..-.+=|+ .-++.|.+-
T Consensus 125 ~~dP~~a~~y~~N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~ 179 (282)
T 3mfq_A 125 KLLPAKAEMIQKNTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAAS 179 (282)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHH
T ss_pred HhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHH
Confidence 899999999999999 5555545554 66778753333222 345555554
No 6
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.41 E-value=26 Score=20.91 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=12.4
Q ss_pred hhhhhhccCCcchhhhh
Q 032039 110 TRIFTQFFGKFDFGEHY 126 (148)
Q Consensus 110 triFTQFfd~~Gi~~~~ 126 (148)
.|||+-||.| ||+.+|
T Consensus 4 Ari~as~faP-GvaAAq 19 (29)
T 1xnl_A 4 ARIFASILAP-GVAAAQ 19 (29)
T ss_dssp TSSTTTSSST-TTHHHH
T ss_pred hhHHHHHhCc-cHHHHH
Confidence 5899999987 676654
No 7
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=19.40 E-value=9.3 Score=26.96 Aligned_cols=7 Identities=29% Similarity=0.691 Sum_probs=5.2
Q ss_pred ChhhHHH
Q 032039 67 DPQLRYS 73 (148)
Q Consensus 67 DPeLRys 73 (148)
||||||+
T Consensus 14 dPelRyT 20 (101)
T 3en2_A 14 REVMRYT 20 (101)
T ss_dssp ECCCEEC
T ss_pred CccEEEC
Confidence 6788875
No 8
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=17.16 E-value=11 Score=26.23 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=5.2
Q ss_pred ChhhHHH
Q 032039 67 DPQLRYS 73 (148)
Q Consensus 67 DPeLRys 73 (148)
||||||+
T Consensus 19 dPelRyt 25 (103)
T 3k8a_A 19 AFPIRYT 25 (103)
T ss_dssp ECCCEEC
T ss_pred CCceEEC
Confidence 7788874
No 9
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=16.67 E-value=12 Score=26.89 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=5.2
Q ss_pred ChhhHHH
Q 032039 67 DPQLRYS 73 (148)
Q Consensus 67 DPeLRys 73 (148)
||||||+
T Consensus 13 dPelRyT 19 (115)
T 3fhw_A 13 CGAMRHT 19 (115)
T ss_dssp ECCCEEC
T ss_pred CcceEEC
Confidence 6788875
No 10
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=14.69 E-value=43 Score=22.90 Aligned_cols=33 Identities=6% Similarity=0.150 Sum_probs=19.7
Q ss_pred hhhhhhccccchhhhhhhhccCCcchhhhhhhh
Q 032039 97 AMAYNVSRNLSFFTRIFTQFFGKFDFGEHYWEL 129 (148)
Q Consensus 97 ~ma~nvsRNl~FFtriFTQFfd~~Gi~~~~~si 129 (148)
.++|+|.|--.-+++.|.+.+.+-||...|+++
T Consensus 6 cl~f~l~ra~r~~~~~~~~~l~~~gLt~~q~~v 38 (148)
T 4fx0_A 6 CACYTTRRAARQLGQAYDRALRPSGLTNTQFST 38 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHGGGTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 345555555455566666666667777666654
Done!