Query 032039
Match_columns 148
No_of_seqs 18 out of 20
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 14:03:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032039.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032039hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i58a_ d.122.1.3 (A:) Histidi 37.2 6.1 0.00044 24.7 1.3 20 26-45 165-184 (189)
2 d2qjza1 a.40.1.1 (A:13-132) Mi 30.7 12 0.00087 25.7 2.1 54 65-119 50-105 (120)
3 d3dmca1 d.17.4.10 (A:1-133) Un 20.1 8.4 0.00061 24.2 -0.4 12 113-124 122-133 (133)
4 d1q3ea_ b.82.3.2 (A:) HCN pace 19.3 16 0.0012 23.9 0.9 40 65-104 22-63 (193)
5 d1gkza2 d.122.1.4 (A:186-378) 18.2 21 0.0015 23.6 1.3 22 27-48 165-188 (193)
6 d1gz8a_ d.144.1.7 (A:) Cyclin- 16.2 17 0.0012 25.4 0.4 29 64-96 267-295 (298)
7 d2bmfa1 c.37.1.14 (A:483-618) 15.9 1.2E+02 0.0089 21.3 5.1 65 33-114 16-81 (136)
8 d2czvc1 d.58.59.1 (C:3-120) RN 14.9 21 0.0015 23.3 0.5 10 91-100 3-12 (118)
9 d1jm6a2 d.122.1.4 (A:1177-1366 11.2 42 0.0031 22.6 1.3 23 26-48 155-179 (190)
10 d1rkta2 a.121.1.1 (A:83-205) H 10.9 79 0.0057 20.1 2.6 20 66-85 37-56 (123)
No 1
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=37.15 E-value=6.1 Score=24.66 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=16.6
Q ss_pred ccccceeEeecCCCCCeeee
Q 032039 26 FKDAKLKVTREPGATPTMHV 45 (148)
Q Consensus 26 f~d~klkvT~qpg~t~TM~v 45 (148)
.-.|++.|++++|.++|..+
T Consensus 165 ~hgG~I~v~S~~g~GT~f~i 184 (189)
T d1i58a_ 165 SLNGSISIESEKDKGTKVTI 184 (189)
T ss_dssp HTTCEEEEEEETTTEEEEEE
T ss_pred HCCCEEEEEecCCCCEEEEE
Confidence 34678999999999998875
No 2
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.67 E-value=12 Score=25.71 Aligned_cols=54 Identities=24% Similarity=0.436 Sum_probs=37.3
Q ss_pred CCChhhHHHHHHHHHHHHHhhccccccccCCch--hhhhhccccchhhhhhhhccCC
Q 032039 65 QLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPA--MAYNVSRNLSFFTRIFTQFFGK 119 (148)
Q Consensus 65 EIDPeLRysFqRNfQFLqRvfsidt~vkpLPp~--ma~nvsRNl~FFtriFTQFfd~ 119 (148)
..++...|-|.+||.-||.+|.=-.+=+++|-. +.-....|+-| ..-|-.|||.
T Consensus 50 kf~a~~e~e~~~N~klLq~af~kl~I~k~i~v~kLikgk~qdnlef-lqWfk~f~d~ 105 (120)
T d2qjza1 50 KFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEF-VQWFKKFFDA 105 (120)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTCCHHHHHHH-HHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhcccchhHHHH-HHHHHHHHHh
Confidence 568888999999999999999777777777753 23333455543 3445555553
No 3
>d3dmca1 d.17.4.10 (A:1-133) Uncharacterized protein Ava2261 {Anabaena variabilis [TaxId: 1172]}
Probab=20.13 E-value=8.4 Score=24.18 Aligned_cols=12 Identities=17% Similarity=0.528 Sum_probs=9.5
Q ss_pred hhhccCCcchhh
Q 032039 113 FTQFFGKFDFGE 124 (148)
Q Consensus 113 FTQFfd~~Gi~~ 124 (148)
+..|||++|+.|
T Consensus 122 ~reY~ds~~~~~ 133 (133)
T d3dmca1 122 YREYFGSDGKSN 133 (133)
T ss_dssp EEEEECSCSBCC
T ss_pred EEEEECCCCccC
Confidence 578888888875
No 4
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.34 E-value=16 Score=23.86 Aligned_cols=40 Identities=15% Similarity=0.337 Sum_probs=31.1
Q ss_pred CCChhhHHHHHHHHHHHH--HhhccccccccCCchhhhhhcc
Q 032039 65 QLDPQLRYSFQRNYQFLQ--RVFSIDTVVKPLPPAMAYNVSR 104 (148)
Q Consensus 65 EIDPeLRysFqRNfQFLq--Rvfsidt~vkpLPp~ma~nvsR 104 (148)
.|.++|+..-.+.|+++- +.+.-+.+++.||+.+...+..
T Consensus 22 ~i~~~l~~rv~~y~~~~~~~~~~~~~~i~~~lp~~l~~~i~~ 63 (193)
T d1q3ea_ 22 KLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEIVN 63 (193)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcccccHHHHHHHCCcchhHHHHH
Confidence 688999988888888763 3445567889999999888764
No 5
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.21 E-value=21 Score=23.61 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=17.0
Q ss_pred cccceeEeecCCCCCeeee--cCC
Q 032039 27 KDAKLKVTREPGATPTMHV--PRK 48 (148)
Q Consensus 27 ~d~klkvT~qpg~t~TM~v--P~~ 48 (148)
-.++|.|.+++|.++|.++ |+-
T Consensus 165 ~gG~i~v~S~~g~Gt~f~l~L~~~ 188 (193)
T d1gkza2 165 LGGSLQLQSLQGIGTDVYLRLRHI 188 (193)
T ss_dssp TTCEEEEEEETTTEEEEEEEEECS
T ss_pred CCCEEEEEecCCCceEEEEEECCC
Confidence 3588999999998888765 544
No 6
>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.24 E-value=17 Score=25.44 Aligned_cols=29 Identities=38% Similarity=0.610 Sum_probs=20.4
Q ss_pred CCCChhhHHHHHHHHHHHHHhhccccccccCCc
Q 032039 64 LQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPP 96 (148)
Q Consensus 64 ~EIDPeLRysFqRNfQFLqRvfsidt~vkpLPp 96 (148)
+++||+-|+|.+ |.|+--| +..+-+|+|.
T Consensus 267 L~~dP~~R~t~~---ell~H~f-f~~~~~p~p~ 295 (298)
T d1gz8a_ 267 LHYDPNKRISAK---AALAHPF-FQDVTKPVPH 295 (298)
T ss_dssp TCSSTTTSCCHH---HHHTSGG-GTTCCCCCCC
T ss_pred ccCChhHCcCHH---HHhCCHh-hccCCCCCCC
Confidence 378888888876 5555555 5677788874
No 7
>d2bmfa1 c.37.1.14 (A:483-618) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=15.90 E-value=1.2e+02 Score=21.28 Aligned_cols=65 Identities=26% Similarity=0.514 Sum_probs=43.6
Q ss_pred EeecCCCCCeeeecCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHhhccccccccCCchhhhhhccc-cchhhh
Q 032039 33 VTREPGATPTMHVPRKVKGSRYDDVDDDNDDLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRN-LSFFTR 111 (148)
Q Consensus 33 vT~qpg~t~TM~vP~~~k~~~~~~~d~~d~~~EIDPeLRysFqRNfQFLqRvfsidt~vkpLPp~ma~nvsRN-l~FFtr 111 (148)
++..-|-.+++|-|...| ...-+..+-+..|=|--|. ++|++ --|||.+||+||.| .+..-|
T Consensus 16 i~~~~g~va~~ygpE~~K------~~~~~G~fRL~~E~RK~F~---~Ll~~--------~D~p~WLAw~VA~~g~~~~DR 78 (136)
T d2bmfa1 16 INTPEGIIPSMFEPEREK------VDAIDGEYRLRGEARKTFV---DLMRR--------GDLPVWLAYRVAAEGINYADR 78 (136)
T ss_dssp CCCTTCCCCCCCGGGSTT------CCCCTTTTCCCHHHHHHHH---HHHHT--------SCCCHHHHHHHHHTTCCTTCG
T ss_pred ccCCCCcceecccchhhc------ccCCCceeecChhhHHHHH---HHHhh--------cCCchhhhHHHHHcCCCcccc
Confidence 345667788899997733 2233344677777776553 23322 25899999999999 677777
Q ss_pred hhh
Q 032039 112 IFT 114 (148)
Q Consensus 112 iFT 114 (148)
-.+
T Consensus 79 ~W~ 81 (136)
T d2bmfa1 79 RWC 81 (136)
T ss_dssp GGG
T ss_pred cee
Confidence 776
No 8
>d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=14.93 E-value=21 Score=23.34 Aligned_cols=10 Identities=40% Similarity=0.810 Sum_probs=8.5
Q ss_pred cccCCchhhh
Q 032039 91 VKPLPPAMAY 100 (148)
Q Consensus 91 vkpLPp~ma~ 100 (148)
+|+|||.|+.
T Consensus 3 ~k~l~p~lR~ 12 (118)
T d2czvc1 3 LKTLPPTLRD 12 (118)
T ss_dssp CCCCCTTTSC
T ss_pred CCcCCCcccc
Confidence 6899999875
No 9
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=11.22 E-value=42 Score=22.62 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=17.3
Q ss_pred ccccceeEeecCCCCCee--eecCC
Q 032039 26 FKDAKLKVTREPGATPTM--HVPRK 48 (148)
Q Consensus 26 f~d~klkvT~qpg~t~TM--~vP~~ 48 (148)
.-.+++.|.+++|.++|+ ++|+.
T Consensus 155 ~hgG~I~v~s~~g~Gt~f~i~lP~~ 179 (190)
T d1jm6a2 155 YFQGDLQLFSMEGFGTDAVIYLKAL 179 (190)
T ss_dssp HTTCEEEEEEETTTEEEEEEEEESS
T ss_pred HCCCEEEEEecCCCceEEEEEEeCC
Confidence 457899999999876665 56754
No 10
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=10.92 E-value=79 Score=20.06 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=17.2
Q ss_pred CChhhHHHHHHHHHHHHHhh
Q 032039 66 LDPQLRYSFQRNYQFLQRVF 85 (148)
Q Consensus 66 IDPeLRysFqRNfQFLqRvf 85 (148)
=||++|=.+++.|+-++..+
T Consensus 37 Rdpeir~~~~~~~~~~~~~l 56 (123)
T d1rkta2 37 RNEERRQYLEKRYDLFVERF 56 (123)
T ss_dssp GCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 48999999999999777776
Done!