Query 032040
Match_columns 148
No_of_seqs 118 out of 1093
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:47:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0740 ClpP Protease subunit 100.0 8.4E-42 1.8E-46 269.2 12.2 116 1-117 81-196 (200)
2 PRK12552 ATP-dependent Clp pro 100.0 8.6E-41 1.9E-45 267.7 12.0 117 1-118 103-219 (222)
3 PRK14513 ATP-dependent Clp pro 100.0 1.5E-39 3.4E-44 257.3 12.0 114 1-115 81-194 (201)
4 KOG0840 ATP-dependent Clp prot 100.0 1.2E-39 2.6E-44 263.6 10.6 113 1-114 146-258 (275)
5 PRK14514 ATP-dependent Clp pro 100.0 6.2E-39 1.3E-43 257.0 11.2 113 1-114 108-220 (221)
6 PRK12551 ATP-dependent Clp pro 100.0 1.8E-38 4E-43 250.3 11.2 113 1-114 79-191 (196)
7 CHL00028 clpP ATP-dependent Cl 100.0 3.9E-38 8.3E-43 249.2 12.3 114 1-115 84-198 (200)
8 PRK14512 ATP-dependent Clp pro 100.0 7.5E-36 1.6E-40 235.5 12.2 117 1-118 77-193 (197)
9 TIGR00493 clpP ATP-dependent C 100.0 1.6E-35 3.4E-40 232.4 10.8 111 1-112 80-190 (191)
10 PRK00277 clpP ATP-dependent Cl 100.0 1.2E-33 2.6E-38 223.1 11.2 115 1-116 85-199 (200)
11 PRK12553 ATP-dependent Clp pro 100.0 1.4E-32 3E-37 218.1 10.8 116 1-116 89-205 (207)
12 cd07013 S14_ClpP Caseinolytic 100.0 1.9E-32 4.2E-37 209.6 10.9 109 1-110 54-162 (162)
13 PF00574 CLP_protease: Clp pro 100.0 7.7E-33 1.7E-37 213.6 7.8 113 1-114 70-182 (182)
14 cd07017 S14_ClpP_2 Caseinolyti 100.0 6.6E-32 1.4E-36 207.8 9.2 109 1-110 63-171 (171)
15 cd07016 S14_ClpP_1 Caseinolyti 99.9 1.9E-23 4.2E-28 158.2 11.6 106 2-110 55-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 99.9 5.8E-22 1.3E-26 153.7 9.8 108 1-117 54-169 (172)
17 cd00394 Clp_protease_like Case 99.8 2E-20 4.2E-25 141.2 10.2 106 2-110 54-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 99.7 1.6E-16 3.5E-21 123.7 10.3 111 2-116 55-168 (187)
19 cd07021 Clp_protease_NfeD_like 99.7 7.6E-16 1.7E-20 119.9 10.0 108 3-118 56-176 (178)
20 cd07014 S49_SppA Signal peptid 99.4 1.4E-12 3E-17 100.4 9.8 100 4-113 70-169 (177)
21 TIGR00706 SppA_dom signal pept 99.2 2.8E-10 6E-15 89.9 10.3 104 6-112 62-194 (207)
22 cd07023 S49_Sppa_N_C Signal pe 99.1 3.7E-10 8E-15 88.9 9.4 107 4-113 65-200 (208)
23 cd07022 S49_Sppa_36K_type Sign 99.0 1.9E-09 4E-14 85.5 10.0 103 6-113 74-206 (214)
24 cd07019 S49_SppA_1 Signal pept 99.0 5.3E-09 1.2E-13 82.8 11.2 107 4-113 69-203 (211)
25 TIGR00705 SppA_67K signal pept 98.8 3.9E-08 8.4E-13 88.8 11.7 106 4-112 377-510 (584)
26 PF01343 Peptidase_S49: Peptid 98.6 4.1E-07 8.9E-12 68.8 9.9 106 4-112 5-139 (154)
27 cd07018 S49_SppA_67K_type Sign 98.6 7E-07 1.5E-11 71.2 10.1 105 4-112 77-212 (222)
28 cd06558 crotonase-like Crotona 98.1 1.5E-05 3.3E-10 61.0 7.6 89 3-113 91-181 (195)
29 PRK08258 enoyl-CoA hydratase; 97.8 0.00013 2.9E-09 59.8 9.1 90 3-114 111-203 (277)
30 COG0616 SppA Periplasmic serin 97.8 0.00011 2.4E-09 61.9 8.8 106 7-115 130-264 (317)
31 PRK05869 enoyl-CoA hydratase; 97.8 0.00014 3.1E-09 58.0 8.6 93 2-114 96-188 (222)
32 PRK06495 enoyl-CoA hydratase; 97.8 0.00013 2.9E-09 59.1 8.5 89 3-114 95-183 (257)
33 COG1030 NfeD Membrane-bound se 97.8 7.2E-05 1.6E-09 65.5 7.2 115 3-125 83-200 (436)
34 PRK06563 enoyl-CoA hydratase; 97.8 0.00013 2.8E-09 59.0 8.0 91 2-114 89-181 (255)
35 PRK06213 enoyl-CoA hydratase; 97.7 0.00018 3.8E-09 57.4 8.3 92 3-114 89-181 (229)
36 PRK11778 putative inner membra 97.7 0.00042 9E-09 59.0 10.6 105 5-114 154-287 (330)
37 PRK08139 enoyl-CoA hydratase; 97.7 0.00033 7.2E-09 57.2 9.5 91 3-114 102-192 (266)
38 PRK09674 enoyl-CoA hydratase-i 97.7 0.00026 5.7E-09 57.3 8.8 93 2-114 89-181 (255)
39 PRK06494 enoyl-CoA hydratase; 97.7 0.00035 7.5E-09 56.7 9.5 92 3-114 92-183 (259)
40 PRK06210 enoyl-CoA hydratase; 97.7 0.0002 4.3E-09 58.4 7.7 90 3-114 106-197 (272)
41 PRK08150 enoyl-CoA hydratase; 97.7 0.00032 6.9E-09 57.0 8.8 91 2-114 89-181 (255)
42 PRK07511 enoyl-CoA hydratase; 97.6 0.00037 8E-09 56.5 8.9 90 3-114 96-187 (260)
43 PRK09245 enoyl-CoA hydratase; 97.6 0.0002 4.3E-09 58.3 7.3 90 3-114 101-192 (266)
44 PRK06143 enoyl-CoA hydratase; 97.6 0.00033 7.2E-09 56.9 8.4 91 3-114 98-188 (256)
45 PRK07799 enoyl-CoA hydratase; 97.6 0.00039 8.5E-09 56.5 8.7 91 3-115 98-190 (263)
46 PRK03580 carnitinyl-CoA dehydr 97.6 0.00039 8.6E-09 56.5 8.6 92 3-114 92-183 (261)
47 PRK06688 enoyl-CoA hydratase; 97.6 0.00044 9.5E-09 55.9 8.8 90 3-114 94-185 (259)
48 PRK05981 enoyl-CoA hydratase; 97.6 0.00031 6.6E-09 57.2 7.8 91 2-114 100-192 (266)
49 PRK08260 enoyl-CoA hydratase; 97.6 0.00035 7.6E-09 57.9 8.3 90 3-114 111-202 (296)
50 KOG1680 Enoyl-CoA hydratase [L 97.6 0.00019 4.2E-09 59.7 6.6 100 4-125 126-227 (290)
51 PRK05862 enoyl-CoA hydratase; 97.6 0.00048 1E-08 55.8 8.9 91 2-114 91-183 (257)
52 PRK07938 enoyl-CoA hydratase; 97.6 0.00029 6.3E-09 57.0 7.5 89 3-114 92-180 (249)
53 PRK10949 protease 4; Provision 97.6 0.0009 1.9E-08 61.2 11.4 106 5-113 396-529 (618)
54 PRK06023 enoyl-CoA hydratase; 97.6 0.00032 6.9E-09 56.7 7.6 93 2-114 94-186 (251)
55 PRK06127 enoyl-CoA hydratase; 97.6 0.00041 8.8E-09 56.7 8.1 91 2-114 103-195 (269)
56 PLN02888 enoyl-CoA hydratase 97.5 0.00052 1.1E-08 56.1 8.5 91 2-114 96-188 (265)
57 PRK06144 enoyl-CoA hydratase; 97.5 0.00041 9E-09 56.5 7.8 92 3-114 100-192 (262)
58 PRK06142 enoyl-CoA hydratase; 97.5 0.00039 8.4E-09 56.8 7.7 89 3-113 107-197 (272)
59 TIGR02280 PaaB1 phenylacetate 97.5 0.00041 8.8E-09 56.2 7.7 90 3-114 91-182 (256)
60 PRK05980 enoyl-CoA hydratase; 97.5 0.00035 7.6E-09 56.6 7.2 90 3-114 98-189 (260)
61 PRK12478 enoyl-CoA hydratase; 97.5 0.00041 8.9E-09 57.8 7.7 89 3-114 110-198 (298)
62 TIGR01929 menB naphthoate synt 97.5 0.00043 9.4E-09 56.3 7.7 90 3-114 95-186 (259)
63 PLN02921 naphthoate synthase 97.5 0.0006 1.3E-08 57.7 8.7 90 3-114 159-250 (327)
64 PRK05995 enoyl-CoA hydratase; 97.5 0.00059 1.3E-08 55.4 8.3 91 3-114 97-187 (262)
65 PRK08138 enoyl-CoA hydratase; 97.5 0.0007 1.5E-08 55.0 8.7 90 3-114 96-187 (261)
66 PRK09120 p-hydroxycinnamoyl Co 97.5 0.0006 1.3E-08 56.0 8.3 92 3-114 102-193 (275)
67 PRK07110 polyketide biosynthes 97.5 0.00059 1.3E-08 55.1 8.0 92 3-114 92-183 (249)
68 PRK09076 enoyl-CoA hydratase; 97.5 0.00076 1.6E-08 54.7 8.6 90 3-114 93-184 (258)
69 PRK05809 3-hydroxybutyryl-CoA 97.5 0.0007 1.5E-08 54.9 8.4 92 3-114 95-186 (260)
70 PRK08259 enoyl-CoA hydratase; 97.5 0.00084 1.8E-08 54.5 8.9 89 4-114 92-182 (254)
71 PRK07260 enoyl-CoA hydratase; 97.5 0.00043 9.4E-09 56.0 7.0 92 3-114 96-187 (255)
72 PRK06190 enoyl-CoA hydratase; 97.5 0.00079 1.7E-08 54.9 8.5 93 2-114 91-183 (258)
73 PRK07396 dihydroxynaphthoic ac 97.4 0.00076 1.6E-08 55.3 8.4 92 3-114 105-196 (273)
74 PLN03214 probable enoyl-CoA hy 97.4 0.00069 1.5E-08 55.8 8.2 94 2-114 104-197 (278)
75 PRK08140 enoyl-CoA hydratase; 97.4 0.00059 1.3E-08 55.4 7.6 90 3-114 97-188 (262)
76 PRK07468 enoyl-CoA hydratase; 97.4 0.00074 1.6E-08 54.9 8.1 92 2-114 97-188 (262)
77 PRK07657 enoyl-CoA hydratase; 97.4 0.00084 1.8E-08 54.5 8.4 90 3-114 95-186 (260)
78 PF00378 ECH: Enoyl-CoA hydrat 97.4 0.00031 6.8E-09 56.1 5.8 92 3-115 88-180 (245)
79 PRK11423 methylmalonyl-CoA dec 97.4 0.00071 1.5E-08 55.1 7.7 93 2-114 93-185 (261)
80 COG1024 CaiD Enoyl-CoA hydrata 97.4 0.0008 1.7E-08 54.4 7.7 91 2-114 95-187 (257)
81 PRK08290 enoyl-CoA hydratase; 97.4 0.001 2.3E-08 55.0 8.6 90 3-114 116-205 (288)
82 PRK08252 enoyl-CoA hydratase; 97.4 0.0015 3.3E-08 52.9 9.3 92 3-114 89-180 (254)
83 PRK07658 enoyl-CoA hydratase; 97.4 0.00086 1.9E-08 54.2 7.9 93 2-114 91-183 (257)
84 PLN02664 enoyl-CoA hydratase/d 97.4 0.00094 2E-08 54.7 8.1 91 3-113 109-199 (275)
85 PRK07327 enoyl-CoA hydratase; 97.4 0.00095 2.1E-08 54.5 8.0 90 3-114 104-195 (268)
86 TIGR03210 badI 2-ketocyclohexa 97.4 0.0013 2.7E-08 53.5 8.6 92 3-114 92-183 (256)
87 PLN02600 enoyl-CoA hydratase 97.4 0.0014 3E-08 53.1 8.8 92 3-114 86-177 (251)
88 PRK08788 enoyl-CoA hydratase; 97.4 0.001 2.2E-08 55.4 8.2 91 4-114 120-210 (287)
89 PRK07659 enoyl-CoA hydratase; 97.3 0.00052 1.1E-08 55.8 6.0 87 3-111 96-184 (260)
90 PRK07509 enoyl-CoA hydratase; 97.3 0.00047 1E-08 55.9 5.6 91 3-113 100-190 (262)
91 PRK05864 enoyl-CoA hydratase; 97.3 0.0011 2.3E-08 54.5 7.4 90 3-114 107-199 (276)
92 PRK08272 enoyl-CoA hydratase; 97.2 0.0012 2.6E-08 54.8 7.4 89 3-114 125-213 (302)
93 TIGR03189 dienoyl_CoA_hyt cycl 97.2 0.0015 3.2E-08 53.0 7.3 90 3-113 87-176 (251)
94 PRK07112 polyketide biosynthes 97.2 0.001 2.2E-08 53.9 6.4 91 3-114 94-184 (255)
95 PRK05674 gamma-carboxygeranoyl 97.2 0.0015 3.3E-08 53.3 7.4 90 3-113 99-188 (265)
96 PRK08321 naphthoate synthase; 97.2 0.0032 7E-08 52.5 9.1 92 3-114 133-225 (302)
97 PRK08184 benzoyl-CoA-dihydrodi 97.1 0.0017 3.6E-08 58.7 7.7 118 3-145 121-240 (550)
98 PRK06072 enoyl-CoA hydratase; 97.1 0.0016 3.4E-08 52.6 6.7 88 2-110 86-173 (248)
99 PRK07854 enoyl-CoA hydratase; 97.1 0.0019 4E-08 52.1 7.1 90 3-112 84-173 (243)
100 PRK05870 enoyl-CoA hydratase; 97.1 0.00098 2.1E-08 53.8 5.1 87 3-111 93-181 (249)
101 PLN02267 enoyl-CoA hydratase/i 97.0 0.0036 7.8E-08 50.5 7.8 92 3-114 92-185 (239)
102 TIGR00705 SppA_67K signal pept 96.9 0.0078 1.7E-07 54.7 9.8 106 5-113 126-269 (584)
103 PF01972 SDH_sah: Serine dehyd 96.9 0.0094 2E-07 49.8 9.3 97 4-106 117-241 (285)
104 TIGR03200 dearomat_oah 6-oxocy 96.9 0.003 6.4E-08 54.5 6.5 90 3-114 122-213 (360)
105 PLN03230 acetyl-coenzyme A car 96.8 0.0038 8.3E-08 54.8 6.7 82 3-114 257-338 (431)
106 PRK12319 acetyl-CoA carboxylas 96.8 0.0044 9.5E-08 51.1 6.6 81 4-114 135-215 (256)
107 PRK07827 enoyl-CoA hydratase; 96.7 0.0031 6.7E-08 51.1 5.1 87 3-112 99-187 (260)
108 PRK11730 fadB multifunctional 96.6 0.011 2.4E-07 54.8 8.9 92 2-115 99-192 (715)
109 TIGR03222 benzo_boxC benzoyl-C 96.6 0.0045 9.8E-08 56.0 5.9 95 3-114 117-213 (546)
110 PRK05724 acetyl-CoA carboxylas 96.5 0.0066 1.4E-07 51.6 6.2 82 3-114 187-268 (319)
111 TIGR00513 accA acetyl-CoA carb 96.5 0.0057 1.2E-07 51.9 5.7 81 4-114 188-268 (316)
112 PLN02874 3-hydroxyisobutyryl-C 96.4 0.012 2.6E-07 50.8 6.8 91 3-114 103-193 (379)
113 TIGR03222 benzo_boxC benzoyl-C 96.3 0.019 4.1E-07 52.0 8.2 92 3-114 363-466 (546)
114 PRK11154 fadJ multifunctional 96.3 0.012 2.7E-07 54.4 7.1 93 2-114 98-192 (708)
115 PRK05617 3-hydroxyisobutyryl-C 96.3 0.0045 9.7E-08 52.6 3.8 89 3-114 98-188 (342)
116 TIGR02440 FadJ fatty oxidation 96.2 0.016 3.5E-07 53.6 7.5 91 2-114 93-187 (699)
117 CHL00198 accA acetyl-CoA carbo 96.1 0.016 3.5E-07 49.3 6.4 82 3-114 190-271 (322)
118 PLN02988 3-hydroxyisobutyryl-C 96.1 0.022 4.7E-07 49.3 7.2 89 3-114 103-193 (381)
119 PLN02157 3-hydroxyisobutyryl-C 95.9 0.017 3.6E-07 50.4 5.8 89 3-114 131-221 (401)
120 TIGR02437 FadB fatty oxidation 95.8 0.042 9E-07 51.1 8.1 90 3-114 100-191 (714)
121 TIGR03134 malonate_gamma malon 95.8 0.066 1.4E-06 43.7 8.2 96 4-127 106-203 (238)
122 PRK08184 benzoyl-CoA-dihydrodi 95.4 0.061 1.3E-06 48.7 7.3 92 3-114 367-470 (550)
123 PRK10949 protease 4; Provision 95.3 0.16 3.4E-06 46.8 9.7 106 5-113 145-288 (618)
124 PLN02851 3-hydroxyisobutyryl-C 95.2 0.046 9.9E-07 47.9 6.0 91 3-114 136-226 (407)
125 TIGR02441 fa_ox_alpha_mit fatt 95.2 0.18 4E-06 47.1 10.0 89 3-113 106-198 (737)
126 COG0825 AccA Acetyl-CoA carbox 94.6 0.063 1.4E-06 45.3 4.8 84 1-114 184-267 (317)
127 PLN03229 acetyl-coenzyme A car 94.2 0.054 1.2E-06 50.6 4.0 82 3-114 278-359 (762)
128 COG3904 Predicted periplasmic 93.5 0.23 5.1E-06 40.2 5.9 92 13-109 140-236 (245)
129 KOG1681 Enoyl-CoA isomerase [L 90.8 0.084 1.8E-06 43.5 0.4 94 3-115 124-217 (292)
130 COG0447 MenB Dihydroxynaphthoi 89.7 0.26 5.7E-06 40.4 2.4 107 1-130 112-222 (282)
131 TIGR01117 mmdA methylmalonyl-C 88.9 1 2.3E-05 40.5 5.9 98 5-119 388-487 (512)
132 KOG1682 Enoyl-CoA isomerase [L 87.6 0.47 1E-05 38.7 2.6 93 1-114 121-213 (287)
133 PLN02820 3-methylcrotonyl-CoA 85.5 3.7 8E-05 37.6 7.4 104 4-116 438-543 (569)
134 PF01039 Carboxyl_trans: Carbo 76.7 2.3 5E-05 37.9 2.9 96 4-115 366-466 (493)
135 TIGR00515 accD acetyl-CoA carb 67.8 26 0.00057 29.3 7.1 81 5-122 193-274 (285)
136 PRK05654 acetyl-CoA carboxylas 62.5 34 0.00073 28.8 6.7 78 5-119 194-272 (292)
137 KOG0016 Enoyl-CoA hydratase/is 57.8 10 0.00022 31.6 2.8 90 5-114 107-196 (266)
138 PF00681 Plectin: Plectin repe 53.7 8.4 0.00018 23.1 1.3 19 91-109 17-35 (45)
139 PF01381 HTH_3: Helix-turn-hel 52.8 31 0.00068 20.5 3.9 32 72-103 12-43 (55)
140 TIGR02675 tape_meas_nterm tape 52.1 31 0.00066 22.9 4.0 28 70-98 45-72 (75)
141 smart00250 PLEC Plectin repeat 51.4 10 0.00022 21.8 1.4 19 92-110 18-36 (38)
142 PF06972 DUF1296: Protein of u 49.3 22 0.00048 23.1 2.8 34 70-104 7-41 (60)
143 TIGR01729 taurine_ABC_bnd taur 45.9 1.1E+02 0.0024 24.5 7.2 30 72-101 227-256 (300)
144 TIGR03427 ABC_peri_uca ABC tra 44.1 43 0.00093 28.3 4.6 36 69-104 226-262 (328)
145 TIGR03070 couple_hipB transcri 42.2 64 0.0014 18.8 4.1 32 72-103 18-49 (58)
146 PF07027 DUF1318: Protein of u 41.8 1E+02 0.0022 21.7 5.4 47 37-90 25-71 (95)
147 KOG1679 Enoyl-CoA hydratase [L 40.5 37 0.00081 28.1 3.5 91 4-117 123-216 (291)
148 PHA00099 minor capsid protein 40.4 1.6E+02 0.0035 22.2 7.0 53 53-107 59-114 (147)
149 PRK09726 antitoxin HipB; Provi 39.4 96 0.0021 20.7 5.0 58 54-111 10-71 (88)
150 PF10593 Z1: Z1 domain; Inter 35.2 83 0.0018 25.4 4.8 68 19-92 7-77 (239)
151 PF14117 DUF4287: Domain of un 34.1 69 0.0015 20.8 3.4 31 71-101 5-36 (61)
152 PF05153 DUF706: Family of unk 32.2 1.2E+02 0.0026 25.2 5.2 71 68-140 5-81 (253)
153 PF12535 Nudix_N: Hydrolase of 31.4 35 0.00075 21.8 1.6 28 62-89 29-56 (58)
154 COG1099 Predicted metal-depend 30.3 1E+02 0.0022 25.5 4.5 32 82-114 166-210 (254)
155 TIGR03042 PS_II_psbQ_bact phot 29.4 2.5E+02 0.0055 21.2 6.2 43 19-73 12-54 (142)
156 PF04033 DUF365: Domain of unk 29.0 47 0.001 23.5 2.0 23 82-104 28-50 (97)
157 TIGR02763 chlamy_scaf chlamydi 28.6 2.3E+02 0.005 20.6 6.7 56 53-110 29-87 (114)
158 cd02791 MopB_CT_Nitrate-R-NapA 27.8 53 0.0011 22.7 2.2 15 94-108 37-51 (122)
159 PF02742 Fe_dep_repr_C: Iron d 27.0 1.6E+02 0.0035 18.9 4.3 43 58-100 5-48 (71)
160 PF13443 HTH_26: Cro/C1-type H 26.9 1.5E+02 0.0032 18.0 4.0 33 68-100 9-42 (63)
161 PRK11480 tauA taurine transpor 26.4 3.3E+02 0.0072 22.2 7.1 33 72-104 249-281 (320)
162 PF01466 Skp1: Skp1 family, di 26.0 2E+02 0.0043 18.9 6.4 49 55-103 17-68 (78)
163 TIGR02607 antidote_HigA addict 25.9 1.1E+02 0.0024 19.4 3.4 32 72-103 21-52 (78)
164 cd02434 Nodulin-21_like_3 Nodu 25.9 2.6E+02 0.0056 22.3 6.1 41 68-109 83-128 (225)
165 COG3093 VapI Plasmid maintenan 25.7 99 0.0022 22.3 3.3 34 72-105 26-59 (104)
166 PF14991 MLANA: Protein melan- 25.6 21 0.00047 26.2 -0.2 22 91-112 16-37 (118)
167 PF06971 Put_DNA-bind_N: Putat 25.0 1.8E+02 0.0038 18.0 4.0 35 56-90 10-49 (50)
168 cd02794 MopB_CT_DmsA-EC The Mo 24.4 71 0.0015 22.3 2.4 17 92-108 30-46 (121)
169 PF08004 DUF1699: Protein of u 24.1 45 0.00097 25.0 1.3 22 78-99 102-123 (131)
170 PF00165 HTH_AraC: Bacterial r 23.8 1.5E+02 0.0032 16.7 3.5 31 57-87 11-41 (42)
171 cd02787 MopB_CT_ydeP The MopB_ 23.7 46 0.001 23.0 1.3 16 93-108 32-47 (112)
172 PRK02866 cyanate hydratase; Va 23.1 1.8E+02 0.004 22.1 4.5 35 71-105 20-54 (147)
173 PF01568 Molydop_binding: Moly 22.5 44 0.00095 22.7 0.9 16 93-108 31-46 (110)
174 PRK07189 malonate decarboxylas 22.5 98 0.0021 26.2 3.2 39 6-46 146-186 (301)
175 PF13171 DUF4004: Protein of u 21.8 2.2E+02 0.0048 22.8 4.9 44 67-110 52-98 (199)
176 cd02786 MopB_CT_3 The MopB_CT_ 21.7 55 0.0012 22.5 1.3 16 93-108 32-47 (116)
177 PF07553 Lipoprotein_Ltp: Host 21.4 1.6E+02 0.0035 18.0 3.3 30 72-101 10-41 (48)
178 cd02785 MopB_CT_4 The MopB_CT_ 21.3 56 0.0012 23.0 1.3 16 93-108 33-48 (124)
179 TIGR03133 malonate_beta malona 21.3 1.1E+02 0.0023 25.6 3.1 39 6-46 137-177 (274)
180 PF14420 Clr5: Clr5 domain 21.2 1.3E+02 0.0027 18.6 2.8 36 63-99 4-39 (54)
181 cd02792 MopB_CT_Formate-Dh-Na- 20.9 84 0.0018 21.7 2.2 23 86-108 28-51 (122)
182 PF09675 Chlamy_scaf: Chlamydi 20.4 3.5E+02 0.0076 19.8 7.1 58 50-109 23-86 (114)
183 PF12844 HTH_19: Helix-turn-he 20.3 2.2E+02 0.0047 17.3 4.4 34 70-103 13-46 (64)
184 cd02775 MopB_CT Molybdopterin- 20.3 62 0.0014 21.3 1.3 17 92-108 23-39 (101)
185 PF13779 DUF4175: Domain of un 20.3 2.7E+02 0.0058 26.9 5.9 74 60-135 470-552 (820)
186 PHA01976 helix-turn-helix prot 20.3 2.2E+02 0.0048 17.4 4.1 31 71-101 17-47 (67)
No 1
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=8.4e-42 Score=269.22 Aligned_cols=116 Identities=35% Similarity=0.500 Sum_probs=112.7
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
|+|+++||+|+|+|+|||||++|++||++++|+++|||++|||||+ |+.+|+++|++++++++.+++..+.++|+++||
T Consensus 81 m~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TG 159 (200)
T COG0740 81 MQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYAEHTG 159 (200)
T ss_pred HHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCchhh
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAA 117 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~~ 117 (148)
++.++|.++|+||+||||+||++|||||+|++.....
T Consensus 160 q~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~~ 196 (200)
T COG0740 160 QTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREAA 196 (200)
T ss_pred CCHHHHHHhhcccccCCHHHHHHcCCcceeccccccc
Confidence 9999999999999999999999999999999876543
No 2
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=8.6e-41 Score=267.71 Aligned_cols=117 Identities=36% Similarity=0.562 Sum_probs=112.4
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
|++++++|+|+|+|+|+|+|++||++|++++|+++|||++|||||+ ++.+|++.|+++++++|+++++.+.++|+++||
T Consensus 103 m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~-~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG 181 (222)
T PRK12552 103 MRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPR-SGARGQATDIQIRAKEVLHNKRTMLEILSRNTG 181 (222)
T ss_pred HHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCC-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 6899999999999999999999999999999999999999999999 778999999999999999999999999999999
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCchhhh
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY 118 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~~~ 118 (148)
++.++|.++|+||+||||+||++|||||+|+++.....
T Consensus 182 ~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~~~~~ 219 (222)
T PRK12552 182 QTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRKDLP 219 (222)
T ss_pred CCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccCCcCC
Confidence 99999999999999999999999999999999765443
No 3
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.5e-39 Score=257.33 Aligned_cols=114 Identities=29% Similarity=0.457 Sum_probs=110.3
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
|+++++||+|+|+|+|+||||+|++||++++|+++|||++|||||+ ++.+|++.|+++++++|+++++.+.++|+++||
T Consensus 81 m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~-~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg 159 (201)
T PRK14513 81 MRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGS-AGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTD 159 (201)
T ss_pred HHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 6889999999999999999999999999999999999999999999 678999999999999999999999999999999
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCch
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 115 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~ 115 (148)
++.++|.++|+||+||||+||++|||||+|+++..
T Consensus 160 ~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 160 LPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred cCHHHHHHHhccCcccCHHHHHHcCCCcEEeccCC
Confidence 99999999999999999999999999999998744
No 4
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=263.57 Aligned_cols=113 Identities=44% Similarity=0.606 Sum_probs=110.8
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
|+||++||.|+|+|+|+|+|+|||++|+||+||++|||++|||||. ++++|++.|+.++++++.++++.+.++|+++||
T Consensus 146 Mq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~-gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tg 224 (275)
T KOG0840|consen 146 MQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPS-GGAGGQATDIVIQAKELMRIKEYLNEIYAKHTG 224 (275)
T ss_pred HHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccC-CCcCccchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999 779999999999999999999999999999999
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
+|.|+|.++|+||.||+|+||++|||||.|++..
T Consensus 225 q~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~p 258 (275)
T KOG0840|consen 225 QPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDHP 258 (275)
T ss_pred CcHHHHHhhhcccccCCHHHHHHhcchhhhhcCC
Confidence 9999999999999999999999999999999964
No 5
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=6.2e-39 Score=257.01 Aligned_cols=113 Identities=29% Similarity=0.491 Sum_probs=109.9
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
|+++++||+|+|+|+||||||+|+++|++++|+++|||++|||||+ ++..|+++|+++++++|+++++.+.++|+++||
T Consensus 108 m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~-~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG 186 (221)
T PRK14514 108 MQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPL-GGAQGQASDIEITAREIQKLKKELYTIIADHSG 186 (221)
T ss_pred HHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCC-cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 6889999999999999999999999999999999999999999999 778999999999999999999999999999999
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
++.++|.++|+||+||||+||++|||||+|++.+
T Consensus 187 ~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 187 TPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIKK 220 (221)
T ss_pred cCHHHHHHHhhcCccCCHHHHHHcCCccEEeecC
Confidence 9999999999999999999999999999999864
No 6
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.8e-38 Score=250.33 Aligned_cols=113 Identities=35% Similarity=0.485 Sum_probs=109.8
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
|+++++||+|+|+|+|+|+||+|+++|++++|+++|||++|||||+ ++..|+++|+++++++|+++++.+.++|+++||
T Consensus 79 m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~-~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG 157 (196)
T PRK12551 79 MQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPL-GGARGQASDIRIQADEILFLKERLNTELSERTG 157 (196)
T ss_pred HHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCC-cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999999999999999999999 678999999999999999999999999999999
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
++.++|.++|+||+||||+||++|||||+|+++.
T Consensus 158 ~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 158 QPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred cCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 9999999999999999999999999999999875
No 7
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=3.9e-38 Score=249.15 Aligned_cols=114 Identities=27% Similarity=0.401 Sum_probs=110.0
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGR-SSGPVTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~-~~G~~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
|+++++||+|+|+|+|+|+|++||++|++++|+++|||++|||||+ ++ ..|++.|+++++++|+++++.+.++|+++|
T Consensus 84 m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~-~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~T 162 (200)
T CHL00028 84 MQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPA-SSFYEGQASEFVLEAEELLKLRETITRVYAQRT 162 (200)
T ss_pred HHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCc-cCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999 55 899999999999999999999999999999
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCch
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 115 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~ 115 (148)
|++.++|.++|+||+||||+||++|||||+|+++..
T Consensus 163 g~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~~ 198 (200)
T CHL00028 163 GKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNNE 198 (200)
T ss_pred CcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecCc
Confidence 999999999999999999999999999999998754
No 8
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=7.5e-36 Score=235.46 Aligned_cols=117 Identities=25% Similarity=0.393 Sum_probs=111.5
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
|+++++||+|+|+|+|+|+|++|+++|++++|++.|||++|||||+ ++..|++.|+++.+++|+++++.+.++|+++||
T Consensus 77 i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~-~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg 155 (197)
T PRK14512 77 IRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPL-SGFKGVATDIEIYANELNKVKSELNDIIAKETG 155 (197)
T ss_pred HHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5788999999999999999999999999999999999999999999 678899999999999999999999999999999
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCchhhh
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY 118 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~~~ 118 (148)
++.++|.++|++|+||||+||++|||||+|+++..++.
T Consensus 156 ~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 156 QELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred cCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhH
Confidence 99999999999999999999999999999998766554
No 9
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=1.6e-35 Score=232.42 Aligned_cols=111 Identities=36% Similarity=0.495 Sum_probs=107.3
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
|+++++||+|+|+|+|+|+|++|+++|++++|++.|||++|||||+ ++..|++.|+++++++|+++++.+.++|+++||
T Consensus 80 l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~-~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg 158 (191)
T TIGR00493 80 MQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPL-GGAQGQASDIEIQANEILRLKGLLNDILANHTG 158 (191)
T ss_pred HHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCc-ccccCCcchhHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5678999999999999999999999999999999999999999999 668899999999999999999999999999999
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeec
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 112 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~ 112 (148)
++.++|+++|++|+||||+||++|||||+|++
T Consensus 159 ~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 159 QSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred cCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 99999999999999999999999999999986
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.2e-33 Score=223.10 Aligned_cols=115 Identities=37% Similarity=0.525 Sum_probs=110.2
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
|+++++||+|+|.|.|+|+|++|+++|++++|++.|||++|||+|+ ++.+|++.|++.++++++++++.+.++|+++||
T Consensus 85 i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~-~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg 163 (200)
T PRK00277 85 MQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPL-GGFQGQATDIEIHAREILKLKKRLNEILAEHTG 163 (200)
T ss_pred HHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCc-ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5678999999999999999999999999999999999999999999 778999999999999999999999999999999
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCchh
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 116 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~ 116 (148)
+++++|.++|++|+||||+||++|||||+|+++.++
T Consensus 164 ~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~~ 199 (200)
T PRK00277 164 QPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRKE 199 (200)
T ss_pred cCHHHHHHHhhCCccccHHHHHHcCCccEEeecCCC
Confidence 999999999999999999999999999999987543
No 11
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.98 E-value=1.4e-32 Score=218.10 Aligned_cols=116 Identities=34% Similarity=0.475 Sum_probs=109.8
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV-GRSSGPVTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~-~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
|+++++||+|+|+|.|+|+|++|+++|++++|++.|||++|||||+. ++..|++.|+++++++++++++.+.++|+++|
T Consensus 89 i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~t 168 (207)
T PRK12553 89 IQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHT 168 (207)
T ss_pred HHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999985 34789999999999999999999999999999
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCchh
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 116 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~ 116 (148)
|++.++|++++++++||||+||++|||||+|+++..+
T Consensus 169 g~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~d 205 (207)
T PRK12553 169 GQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSYRD 205 (207)
T ss_pred CCCHHHHHHHHhcCccccHHHHHHcCCccEEcCchhh
Confidence 9999999999999999999999999999999987654
No 12
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.98 E-value=1.9e-32 Score=209.60 Aligned_cols=109 Identities=32% Similarity=0.475 Sum_probs=105.3
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
|+.+++||+|+|.|+|+|+|++|+++|++++|++.||+++|||+|+ ++..|++.|+++.++++++.++.+.++|+++||
T Consensus 54 i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~-~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg 132 (162)
T cd07013 54 IKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPW-GGTLGDATDMRIYADLLLKVEGNLVSAYAHKTG 132 (162)
T ss_pred HHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecCEEEEEccCc-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999999999999999999 678899999999999999999999999999999
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceee
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKI 110 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~I 110 (148)
+++++|+++|++++||||+||++|||||+|
T Consensus 133 ~~~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 133 QSEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred cCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 999999999999999999999999999986
No 13
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=99.98 E-value=7.7e-33 Score=213.63 Aligned_cols=113 Identities=35% Similarity=0.502 Sum_probs=103.8
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
|+.++.||+|+|.|.|+|+|++|+++|++++|++.|||+||+|+|+ .+..|+..++++.++++++.++.+.++|+++||
T Consensus 70 i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~-~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg 148 (182)
T PF00574_consen 70 IRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPS-TGSGGNASELREQAKELEKLNERIANIYAERTG 148 (182)
T ss_dssp HHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CE-EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecce-eecccccchhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4578999999999999999999999999999999999999999998 668889999999999999999999999999999
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
+++++|.++|++|+||+|+||++|||||+|++++
T Consensus 149 ~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~~ 182 (182)
T PF00574_consen 149 LSKEEIEELMDRDTWLSAEEALEYGIIDEIIESR 182 (182)
T ss_dssp S-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS-
T ss_pred CcHHHHHHHHhCCccccHHHHHHcCCCCEeccCC
Confidence 9999999999999999999999999999999863
No 14
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=99.97 E-value=6.6e-32 Score=207.85 Aligned_cols=109 Identities=42% Similarity=0.595 Sum_probs=104.9
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
|++++.||+|+|.|+|+|+|++|+++|++++|++.|||++|+|+|+ ++..|++.+++..+++|+++++.+.++|+++||
T Consensus 63 l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg 141 (171)
T cd07017 63 MQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPL-GGAGGQASDIEIQAKEILRLRRRLNEILAKHTG 141 (171)
T ss_pred HHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCC-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567899999999999999999999999999999999999999999 678899999999999999999999999999999
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceee
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKI 110 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~I 110 (148)
++.++|.++|++++||||+||++|||||+|
T Consensus 142 ~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 142 QPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 999999999999999999999999999987
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.90 E-value=1.9e-23 Score=158.21 Aligned_cols=106 Identities=27% Similarity=0.344 Sum_probs=100.8
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
+.++.||+|++.|.|+|+|++|+++|+ +|++.|+|+||+|+|+ ++..|+..+++...+++++.++.+.+.|++++|+
T Consensus 55 ~~~~~pvi~~v~g~a~s~g~~ia~a~d--~~~~~~~a~~~~~~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~ 131 (160)
T cd07016 55 KRHKGKVTVKIDGLAASAASVIAMAGD--EVEMPPNAMLMIHNPS-TGAAGNADDLRKAADLLDKIDESIANAYAEKTGL 131 (160)
T ss_pred HhcCCCEEEEEcchHHhHHHHHHhcCC--eEEECCCcEEEEECCc-cccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 457899999999999999999999995 7999999999999998 6678889999999999999999999999999999
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceee
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKI 110 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~I 110 (148)
+.+++++++.+++||+++||+++||||+|
T Consensus 132 ~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 132 SEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred CHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 99999999999999999999999999986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.87 E-value=5.8e-22 Score=153.69 Aligned_cols=108 Identities=13% Similarity=0.089 Sum_probs=94.1
Q ss_pred CccccCceEEEeh---hhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCC-----HHHHHHHHHHHHHHHHHHH
Q 032040 1 MAYCKSKVYTVNC---GMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGP-----VTDMWRKAKDLEANAESYI 72 (148)
Q Consensus 1 m~~i~~~V~T~~~---G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~-----~~dl~~~a~~l~~~~~~l~ 72 (148)
|+..+.||.|+|. |+|+|+|++|+++|+ +|+|.|++++++|+|. .+ .|+ ..+.+....++..++.
T Consensus 54 i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~--~i~m~p~s~iG~~~pi-~~-~g~~~~~~~~~~ki~~~~~~~~r~--- 126 (172)
T cd07015 54 IQQSKIPVIIYVYPPGASAASAGTYIALGSH--LIAMAPGTSIGACRPI-LG-YSQNGSIIEAPPKITNYFIAYIKS--- 126 (172)
T ss_pred HHhcCcCEEEEEecCCCeehhHHHHHHHhcC--ceEECCCCEEEEcccc-cc-CCCCCccccchHHHHHHHHHHHHH---
Confidence 3567899999999 999999999999995 5999999999999997 43 355 5577777777766665
Q ss_pred HHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCchhh
Q 032040 73 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAA 117 (148)
Q Consensus 73 ~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~~ 117 (148)
|++++|++.+.+++++++++|||++||++|||||.|..+..+.
T Consensus 127 --~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~l 169 (172)
T cd07015 127 --LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINEL 169 (172)
T ss_pred --HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHH
Confidence 9999999999999999999999999999999999999886553
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.84 E-value=2e-20 Score=141.20 Aligned_cols=106 Identities=20% Similarity=0.260 Sum_probs=96.3
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGP--VTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~--~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
+.++.||.+++.|.|+|+|.+|+++|+ +|++.|++++++|+|+. ...+. ..+.+...+.++.+.+.+.+.+++++
T Consensus 54 ~~~~kpvva~~~g~~~s~g~~la~~~d--~~~~~~~a~~~~~g~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r 130 (161)
T cd00394 54 QASRKPVIAYVGGQAASAGYYIATAAN--KIVMAPGTRVGSHGPIG-GYGGNGNPTAQEADQRIILYFIARFISLVAENR 130 (161)
T ss_pred HHhCCCEEEEECChhHHHHHHHHhCCC--EEEECCCCEEEEeeeEE-ecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456899999999999999999999995 89999999999999984 44443 37777788899999999999999999
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceee
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 110 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~I 110 (148)
|++.+++.+++.++.||+++||+++||||+|
T Consensus 131 ~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 131 GQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred CCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 9999999999999999999999999999986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.69 E-value=1.6e-16 Score=123.71 Aligned_cols=111 Identities=21% Similarity=0.211 Sum_probs=90.1
Q ss_pred ccccCceEEEeh---hhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032040 2 AYCKSKVYTVNC---GMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKG 78 (148)
Q Consensus 2 ~~i~~~V~T~~~---G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~ 78 (148)
..++.||.+.+. |.|+|+|++|+++|+ .|++.|+|+|++|.|.. +..+...+...+.+.+..+.. ....|+++
T Consensus 55 ~~~~kPvia~v~~~~G~AasgG~~iala~D--~iva~p~a~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 130 (187)
T cd07020 55 LASPVPVVVYVYPSGARAASAGTYILLAAH--IAAMAPGTNIGAAHPVA-IGGGGGSDPVMEKKILNDAVA-YIRSLAEL 130 (187)
T ss_pred HhCCCCEEEEEecCCCCchhHHHHHHHhCC--ceeECCCCcEEeccccc-cCCCCcchHHHHHHHHHHHHH-HHHHHHHH
Confidence 356899999998 999999999999995 68999999999999973 323322233344445554443 57788999
Q ss_pred cCCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCchh
Q 032040 79 TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 116 (148)
Q Consensus 79 Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~ 116 (148)
+|.+.+.+++++.+..||+++||+++||||+|.++..+
T Consensus 131 ~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~ 168 (187)
T cd07020 131 RGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNE 168 (187)
T ss_pred cCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHH
Confidence 99999999999999999999999999999999987543
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.65 E-value=7.6e-16 Score=119.86 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=88.4
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
..+.||.+++.|.|+|+|++|++++ ++++|.|++.++.|.|. ....++..+ +.+.+....+.+-|++++|++
T Consensus 56 ~~~~pvva~V~g~AaSaG~~ia~a~--d~i~m~p~a~iG~~~~v-~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~ 127 (178)
T cd07021 56 NSPIPTIAYVNDRAASAGALIALAA--DEIYMAPGATIGAAEPI-PGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRD 127 (178)
T ss_pred hCCCCEEEEECCchHHHHHHHHHhC--CeEEECCCCeEecCeeE-cCCCccchh-----HHHHHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999 57999999999999998 433333222 223334445566799999999
Q ss_pred HHHHHHhhcCC-------------CcccHHHHHHcCCceeeecCchhhh
Q 032040 83 KEEIAKDIQRP-------------KYMQAKEAIVYGLADKIIDSQDAAY 118 (148)
Q Consensus 83 ~e~i~~~m~rd-------------~~lta~EA~eyGlID~Ii~~~~~~~ 118 (148)
.+.++.+++++ .|||++||+++|++|.|..+..+..
T Consensus 128 ~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 128 PDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred HHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 99999999999 5999999999999999988766543
No 20
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.42 E-value=1.4e-12 Score=100.42 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=87.3
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPK 83 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~~ 83 (148)
++.||.+++.|.|+|.|..|++++ +.|++.|++.|++|.++.+ ....-..++.+.+.+.+.+++..|++.
T Consensus 70 ~~kpVia~v~G~a~g~g~~la~a~--D~i~a~~~a~~~~~G~~~~--------~~~~~~~l~~~~~~~~~~v~~~rg~~~ 139 (177)
T cd07014 70 AGKPVVASGGGNAASGGYWISTPA--NYIVANPSTLVGSIGIFGV--------QLADQLSIENGYKRFITLVADNRHSTP 139 (177)
T ss_pred CCCCEEEEECCchhHHHHHHHHhC--CEEEECCCCeEEEechHhh--------HHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 578999999999999999999999 4799999999999977622 112234677888899999999999999
Q ss_pred HHHHHhhcCCCcccHHHHHHcCCceeeecC
Q 032040 84 EEIAKDIQRPKYMQAKEAIVYGLADKIIDS 113 (148)
Q Consensus 84 e~i~~~m~rd~~lta~EA~eyGlID~Ii~~ 113 (148)
+.+.+++....|++++||+++||||+|...
T Consensus 140 ~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~ 169 (177)
T cd07014 140 EQQIDKIAQGGVWTGQDAKANGLVDSLGSF 169 (177)
T ss_pred HHhHHHhcCcCeEeHHHHHHcCCcccCCCH
Confidence 999999999999999999999999999753
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.16 E-value=2.8e-10 Score=89.95 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=80.0
Q ss_pred CceEEEehhhhHHHHHHHHhcCCCCceeecccCeeee------ecCC---------------CC-------CCCC-CHHH
Q 032040 6 SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL------YLPV---------------VG-------RSSG-PVTD 56 (148)
Q Consensus 6 ~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMI------H~p~---------------~~-------~~~G-~~~d 56 (148)
.||.+++.|.|+|.|..|++++ ++|++.|++.+.. |... .+ .+.. +..+
T Consensus 62 kpvia~v~g~a~s~g~~la~aa--D~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~ 139 (207)
T TIGR00706 62 KPVVASMGGVAASGGYYIAMAA--DEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEE 139 (207)
T ss_pred CCEEEEECCccchHHHHHHhcC--CEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHH
Confidence 8999999999999999999999 5799999987533 3210 00 0001 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcCCceeeec
Q 032040 57 MWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 112 (148)
Q Consensus 57 l~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~ 112 (148)
-+..-..|+.+.+.+.+.+++.-|++.++++++++... +++++|+++||||+|..
T Consensus 140 ~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~-~~~~~A~~~gLvD~i~~ 194 (207)
T TIGR00706 140 RDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRV-FTGRQALKLRLVDKLGT 194 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCc-ccHHHHHHcCCCcccCC
Confidence 34444667777888888899999999999999988876 59999999999999964
No 22
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.13 E-value=3.7e-10 Score=88.93 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=83.1
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCCCCceeecccCee------eee------------cCCC---C-------CCC-CCH
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST------KLY------------LPVV---G-------RSS-GPV 54 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~i------MIH------------~p~~---~-------~~~-G~~ 54 (148)
.+.||.+++.|.|+|.|..|++++ ++|++.|+|.+ +.| ++.. + ... -+.
T Consensus 65 ~~kpvia~v~g~~~s~g~~lA~aa--D~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~ 142 (208)
T cd07023 65 AKKPVVASMGDVAASGGYYIAAAA--DKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTE 142 (208)
T ss_pred cCCcEEEEECCcchhHHHHHHhhC--CEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCH
Confidence 367999999999999999999999 47999999987 444 1211 0 000 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcCCceeeecC
Q 032040 55 TDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 113 (148)
Q Consensus 55 ~dl~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~ 113 (148)
.+-+.....|+.+.+.+.+.+++..|++.+++.++.+...| ++++|+++||||+|...
T Consensus 143 ~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~-~a~~A~~~gLiD~i~~~ 200 (208)
T cd07023 143 EERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVW-TGRQALELGLVDELGGL 200 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEE-EHHHHHHcCCCcccCCH
Confidence 34555566778888889999999999999999998887775 79999999999999753
No 23
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.04 E-value=1.9e-09 Score=85.54 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=81.2
Q ss_pred CceEEEehhhhHHHHHHHHhcCCCCceeecccCee------eeecCCCCC------------CCC------------CHH
Q 032040 6 SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST------KLYLPVVGR------------SSG------------PVT 55 (148)
Q Consensus 6 ~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~i------MIH~p~~~~------------~~G------------~~~ 55 (148)
.||.+++.|.|+|.|..|+++++ ++++.|++.+ +.|... .. ..| +..
T Consensus 74 KpViA~v~g~a~s~gy~lA~~aD--~i~a~~~a~~g~iG~~~~~~~~-~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~ 150 (214)
T cd07022 74 KPIVAFVNGLAASAAYWIASAAD--RIVVTPTAGVGSIGVVASHVDQ-SKALEKAGLKVTLIFAGAHKVDGNPDEPLSDE 150 (214)
T ss_pred CCEEEEECCchhhHHHHHHhcCC--EEEEcCCCeEEeeeEEEecCCH-HHHHHhCCCeEEEEEcCCCccCCCCCCCCCHH
Confidence 89999999999999999999994 7999999985 333321 00 011 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcCCceeeecC
Q 032040 56 DMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 113 (148)
Q Consensus 56 dl~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~ 113 (148)
+-+...+.|+.+.+.+.+.+++..|++.+++++.+ ...+++++|+++||||+|...
T Consensus 151 ~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~ 206 (214)
T cd07022 151 ARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTL 206 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCH
Confidence 44455567788888999999999999999999888 556899999999999999653
No 24
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.00 E-value=5.3e-09 Score=82.84 Aligned_cols=107 Identities=20% Similarity=0.156 Sum_probs=81.4
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeec---------------------CCCCC---CC-C---CHH
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL---------------------PVVGR---SS-G---PVT 55 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~---------------------p~~~~---~~-G---~~~ 55 (148)
.+.||.+++.|.|+|.|..|.+++ +.+++.|++++...- +..++ .. . +..
T Consensus 69 ~~kpVia~v~g~a~s~gy~la~~a--D~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e 146 (211)
T cd07019 69 AGKPVVVSAGGAAASGGYWISTPA--NYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPE 146 (211)
T ss_pred CCCCEEEEECCeehhHHHHHHHhC--CEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHH
Confidence 578999999999999999999999 578999998873221 11000 00 0 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcCCceeeecC
Q 032040 56 DMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 113 (148)
Q Consensus 56 dl~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~ 113 (148)
+-+.....++.+.+.+.+..++..+++++++++..+ ..+++++||+++||||+|...
T Consensus 147 ~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~-~~~~~~~~A~~~GLvD~i~~~ 203 (211)
T cd07019 147 AQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDF 203 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcC-CcEEeHHHHHHcCCcccCCCH
Confidence 223334667888889999999999999999988664 579999999999999999653
No 25
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.83 E-value=3.9e-08 Score=88.76 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=85.1
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCCCCceeecccCee------eeecCC---------------CC-------CCCCCHH
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST------KLYLPV---------------VG-------RSSGPVT 55 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~i------MIH~p~---------------~~-------~~~G~~~ 55 (148)
.+.||.+.+.|+|+|.|-.|.++|+ ++++.|++.+ +.+... .+ ....+..
T Consensus 377 ~gKPVva~~~g~aaSggY~iA~aaD--~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~ 454 (584)
T TIGR00705 377 RGKPVIVSMGAMAASGGYWIASAAD--YIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAE 454 (584)
T ss_pred CCCcEEEEECCccccHHHHHHHhCC--EEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHH
Confidence 3579999999999999999999994 7899999976 544210 00 0112455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcCCceeeec
Q 032040 56 DMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 112 (148)
Q Consensus 56 dl~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~ 112 (148)
+.+.....++...+.+.+..++..|++.++++.+.+...| +++||+++||||+|..
T Consensus 455 ~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~-tg~eA~~~GLVD~ig~ 510 (584)
T TIGR00705 455 DQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVW-TGEDAVSNGLVDALGG 510 (584)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCc-CHHHHHHcCCcccCCC
Confidence 6666777888888889999999999999999998888776 9999999999999954
No 26
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.62 E-value=4.1e-07 Score=68.75 Aligned_cols=106 Identities=19% Similarity=0.168 Sum_probs=75.3
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCC---------------------CC------CCC--CH
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV---------------------GR------SSG--PV 54 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~---------------------~~------~~G--~~ 54 (148)
.+.||.+++.|+++|.+=+|++++ ++.++.|.+.+...-... +. ... +.
T Consensus 5 ~~KpV~a~~~~~~~S~~Y~lAs~a--d~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~ 82 (154)
T PF01343_consen 5 SGKPVVAYAEGYAASGAYYLASAA--DEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE 82 (154)
T ss_dssp TT--EEEEEEEEEETHHHHHHTTS--SEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred cCCeEEEEECCcchhHHHHHHHcC--CEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence 467999999999999999999999 467999998876543220 00 001 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcCCceeeec
Q 032040 55 TDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 112 (148)
Q Consensus 55 ~dl~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~ 112 (148)
.+-+..-+.|+.+.+.+.+..++.-|++.++++++.+. ..+++++|+++||||+|..
T Consensus 83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~ 139 (154)
T PF01343_consen 83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGT 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCC
Confidence 33334446677778888888899999999999998877 7789999999999999954
No 27
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.56 E-value=7e-07 Score=71.23 Aligned_cols=105 Identities=18% Similarity=0.076 Sum_probs=78.9
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC-----------------------CC--------
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS-----------------------SG-------- 52 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~-----------------------~G-------- 52 (148)
.+.||.+++.| |+|.+-+|.++++ +.++.|++.+.+.-...... .+
T Consensus 77 ~~kpVia~~~~-~~sggy~lasaad--~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~ 153 (222)
T cd07018 77 SGKPVIAYADG-YSQGQYYLASAAD--EIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDM 153 (222)
T ss_pred hCCeEEEEeCC-CCchhhhhhhhCC--EEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccC
Confidence 35799999887 8899999999994 78999999999864321100 01
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcCCceeeec
Q 032040 53 PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 112 (148)
Q Consensus 53 ~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~ 112 (148)
+..+-+..-+.++.+.+.+.+..++.-+++.+++++..+ ...+++++|++.||||+|..
T Consensus 154 s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~-~~~~~~~~A~~~GLvD~i~~ 212 (222)
T cd07018 154 SPEAREQTQALLDSLWDQYLADVAASRGLSPDALEALID-LGGDSAEEALEAGLVDGLAY 212 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-cCCcHHHHHHHCCCCCcCCc
Confidence 112222334556667778888888888999999988877 56889999999999999964
No 28
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.09 E-value=1.5e-05 Score=60.98 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=64.8
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~--~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|..|++++ +.|++.++++|.+..+..+.. .|....+. ++.|
T Consensus 91 ~~~~p~Ia~v~G~a~g~G~~la~~~--D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~------------------~~~g 150 (195)
T cd06558 91 RLPKPVIAAVNGAALGGGLELALAC--DIRIAAEDAKFGLPEVKLGLVPGGGGTQRLP------------------RLVG 150 (195)
T ss_pred cCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEEechhhhcCCCCCCcHHHHHH------------------HHhC
Confidence 4688999999999999999999999 589999999998876654322 12221111 1112
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecC
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 113 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~ 113 (148)
.....+++-....++++||++.||||+|++.
T Consensus 151 --~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 151 --PARARELLLTGRRISAEEALELGLVDEVVPD 181 (195)
T ss_pred --HHHHHHHHHcCCccCHHHHHHcCCCCeecCh
Confidence 2333444555778899999999999999876
No 29
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=97.83 E-value=0.00013 Score=59.82 Aligned_cols=90 Identities=18% Similarity=0.303 Sum_probs=64.0
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS---SGPVTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~---~G~~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+....+|.. .|...-+. +..
T Consensus 111 ~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~------------------~~v 170 (277)
T PRK08258 111 ACPQPIIAAVDGVCAGAGAILAMAS--DLRLGTPSAKTAFLFTRVGLAGADMGACALLP------------------RII 170 (277)
T ss_pred hCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEEeccccccCcCCCCchHHHHHH------------------HHh
Confidence 5688999999999999999999999 589999999988765554322 12111111 111
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
| .....+++-....++++||+++||||+|..+.
T Consensus 171 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 203 (277)
T PRK08258 171 G--QGRASELLYTGRSMSAEEGERWGFFNRLVEPE 203 (277)
T ss_pred C--HHHHHHHHHcCCCCCHHHHHHcCCCcEecCHH
Confidence 2 12234445555789999999999999998754
No 30
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.83 E-value=0.00011 Score=61.88 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=75.4
Q ss_pred ceEEEehhhhHHHHHHHHhcCCCCceeecccCee------eeecCCC----------------------CCCCCCHHHHH
Q 032040 7 KVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST------KLYLPVV----------------------GRSSGPVTDMW 58 (148)
Q Consensus 7 ~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~i------MIH~p~~----------------------~~~~G~~~dl~ 58 (148)
||++.+-++|||.|.+|.++++ +.+|.|+|.+ +.|.... +.+.....+-+
T Consensus 130 PV~v~v~~~AASGGY~IA~aAd--~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~ 207 (317)
T COG0616 130 PVVVSVGGYAASGGYYIALAAD--KIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEER 207 (317)
T ss_pred CEEEEECCeecchhhhhhccCC--EEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHH
Confidence 8999999999999999999994 6799999864 2222110 00111222222
Q ss_pred H-HHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCch
Q 032040 59 R-KAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 115 (148)
Q Consensus 59 ~-~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~ 115 (148)
. .-+.++...+.+.+..++..+.+.+++.. ......+++++|++.||||++.+...
T Consensus 208 ~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~-~a~g~v~~g~~A~~~gLVDelg~~~~ 264 (317)
T COG0616 208 EILQKEIDETYDEFVDKVAEGRGLSDEAVDK-LATGRVWTGQQALELGLVDELGGLDD 264 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChhHHHH-HhccceecHHHhhhcCCchhcCCHHH
Confidence 2 33466667778888888889999988544 45556668999999999999977543
No 31
>PRK05869 enoyl-CoA hydratase; Validated
Probab=97.80 E-value=0.00014 Score=57.97 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=63.1
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
..++.||.+.+-|.|.+.|..|.+++ +.|++.++++|-+-....|..-+-. -. ..+.+..|
T Consensus 96 ~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g-~~---------------~~l~~~ig- 156 (222)
T PRK05869 96 AAIPKPTVAAITGYALGAGLTLALAA--DWRVSGDNVKFGATEILAGLAPSGD-GM---------------ARLTRAAG- 156 (222)
T ss_pred HhCCCCEEEEEcCEeecHHHHHHHhC--CEEEecCCCEEcCchhccCCCCCcc-HH---------------HHHHHHhC-
Confidence 35688999999999999999999999 5899999988766433322211110 00 01111222
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.....+++-...+++++||+++||||+|..+.
T Consensus 157 -~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 188 (222)
T PRK05869 157 -PSRAKELVFSGRFFDAEEALALGLIDEMVAPD 188 (222)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCch
Confidence 22334455555689999999999999998654
No 32
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=97.79 E-value=0.00013 Score=59.10 Aligned_cols=89 Identities=17% Similarity=0.089 Sum_probs=64.8
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+-....|.. |...- +.+..|
T Consensus 95 ~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~-~~~~~------------------l~~~~g-- 151 (257)
T PRK06495 95 ECAKPVIAAVNGPALGAGLGLVASC--DIIVASENAVFGLPEIDVGLA-GGGKH------------------AMRLFG-- 151 (257)
T ss_pred hCCCCEEEEECCeeehhHHHHHHhC--CEEEecCCCEeeChhhccCcc-ccHHH------------------HHHHhC--
Confidence 4688999999999999999999999 579999999887744433322 22111 112223
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.....+++-....++++||+++||||+|.++.
T Consensus 152 ~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (257)
T PRK06495 152 HSLTRRMMLTGYRVPAAELYRRGVIEACLPPE 183 (257)
T ss_pred HHHHHHHHHcCCeeCHHHHHHcCCcceecCHH
Confidence 34455666667789999999999999998754
No 33
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=7.2e-05 Score=65.54 Aligned_cols=115 Identities=18% Similarity=0.190 Sum_probs=84.1
Q ss_pred cccCceEEEeh---hhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 3 YCKSKVYTVNC---GMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 3 ~i~~~V~T~~~---G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
..+.||..++. +.|+|+||+|+++.. .-+|.|++.+-=-+|-.. .|++.+-+. ..+.-....+-.++.-
T Consensus 83 ~s~vPV~~yv~p~ga~AaSAGtyI~m~~h--iaaMAPgT~iGaa~Pi~~--~g~~~~~~~----~~n~~~ay~~~~A~~~ 154 (436)
T COG1030 83 NSPVPVIGYVVPDGARAASAGTYILMATH--IAAMAPGTNIGAATPIAG--GGTSAKEAN----TTNAAVAYIRSLAEER 154 (436)
T ss_pred cCCCCEEEEEcCCCcchhchhhHHHHhcC--hhhhCCCCcccccceecC--CCCCccchh----hHHHHHHHHHHHHHHc
Confidence 45778777774 589999999999994 568999998888888632 233322221 1122233455578888
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCchhhhchhhHHH
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRDYDM 125 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~~~~~~~~~~ 125 (148)
|+..+-.+++..++.-++++||.++|+||-|-.+..+.-.+.|...
T Consensus 155 gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~~g~~ 200 (436)
T COG1030 155 GRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKLDGRS 200 (436)
T ss_pred CCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHHHccCCc
Confidence 9999999999999999999999999999999877666555554433
No 34
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=97.77 E-value=0.00013 Score=59.03 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=63.5
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~--~G~~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
..++.||.+.+-|.|.+.|..|++++ +.|++.++++|-+.....|.. .|...-+ .+..
T Consensus 89 ~~~~kPvIAav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v 148 (255)
T PRK06563 89 RRLSKPLVVAVQGYCLTLGIELMLAA--DIVVAADNTRFAQLEVQRGILPFGGATLRF------------------PQAA 148 (255)
T ss_pred hcCCCCEEEEEcCeeecHHHHHHHhC--CEEEecCCCEEeChhhhcCCCCCccHHHHH------------------HHHh
Confidence 35789999999999999999999999 589999999887754443321 1211111 1111
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
| ...-.+++-....|+++||+++||||+|..+.
T Consensus 149 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK06563 149 G--WGNAMRYLLTGDEFDAQEALRLGLVQEVVPPG 181 (255)
T ss_pred h--HHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHH
Confidence 2 12233445555678999999999999998764
No 35
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=97.74 E-value=0.00018 Score=57.42 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=61.6
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeeccc-CeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN-SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pn-a~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
.++.||.+.+-|.|.+.|..|++++ +.|++.++ ++|.+-....|..-.. .-.. .+.++.|
T Consensus 89 ~~~kPvIAav~G~a~GgG~~lal~~--D~rva~~~~a~f~~pe~~~Gl~~~~-~~~~---------------~l~~~~g- 149 (229)
T PRK06213 89 SHPKPVIVACTGHAIAKGAFLLLSA--DYRIGVHGPFKIGLNEVAIGMTMPH-AAIE---------------LARDRLT- 149 (229)
T ss_pred cCCCCEEEEEcCeeeHHHHHHHHhC--CeeeEecCCcEEECchhhhCCcCCh-HHHH---------------HHHHHcC-
Confidence 5689999999999999999999999 58999998 8777632222211010 0000 0111122
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
....++++-...+++++||+++||||+|..+.
T Consensus 150 -~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~ 181 (229)
T PRK06213 150 -PSAFQRAVINAEMFDPEEAVAAGFLDEVVPPE 181 (229)
T ss_pred -HHHHHHHHHcCcccCHHHHHHCCCceeccChH
Confidence 12334455566789999999999999998643
No 36
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.72 E-value=0.00042 Score=59.03 Aligned_cols=105 Identities=15% Similarity=0.072 Sum_probs=69.2
Q ss_pred cCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCC-----C----------------C-------CCCC-CHH
Q 032040 5 KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV-----V----------------G-------RSSG-PVT 55 (148)
Q Consensus 5 ~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~-----~----------------~-------~~~G-~~~ 55 (148)
+.||++.+.++|+|.|=+|.++++ +-++.|.+.+-..-.. . | .+.. +..
T Consensus 154 ~kpVva~v~~~AASggY~iAsaAD--~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see 231 (330)
T PRK11778 154 GIPLTVAVDKVAASGGYMMACVAD--KIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEE 231 (330)
T ss_pred CCCEEEEECCchhhHHHHHHHhCC--EEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHH
Confidence 469999999999999999999995 6789998876432211 0 0 0001 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 56 DMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 56 dl~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
+-+..-+.|+.+.+.+.+..+++-+ ..++++..+.. .+++++|++.||||+|...+
T Consensus 232 ~Re~~q~~Ld~~y~~F~~~Va~~R~--~l~~~~va~G~-v~~g~~Al~~GLVD~Ig~~d 287 (330)
T PRK11778 232 GREKFREELEETHQLFKDFVQRYRP--QLDIDKVATGE-HWYGQQALELGLVDEIQTSD 287 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--cCCHHHHHhCC-CcCHHHHHHCCCCCcCCCHH
Confidence 3333445666666777777766543 23344444554 46899999999999997643
No 37
>PRK08139 enoyl-CoA hydratase; Validated
Probab=97.70 E-value=0.00033 Score=57.18 Aligned_cols=91 Identities=11% Similarity=0.138 Sum_probs=63.3
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||...+-|.|.+.|.-|++++ +.|++.++++|-+-....|..-+-. -. .| .+..|
T Consensus 102 ~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~~-~~-----~l-----------~r~vG-- 160 (266)
T PRK08139 102 ALPQPVIARVHGIATAAGCQLVASC--DLAVAADTARFAVPGVNIGLFCSTP-MV-----AL-----------SRNVP-- 160 (266)
T ss_pred hCCCCEEEEECceeeHHHHHHHHhC--CEEEEeCCCEEeCcccCcCCCCCcc-HH-----HH-----------HHHhC--
Confidence 5689999999999999999999999 5899999998866433323211111 00 11 11223
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|.++.
T Consensus 161 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 192 (266)
T PRK08139 161 RKQAMEMLLTGEFIDAATAREWGLVNRVVPAD 192 (266)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCccEeeChh
Confidence 23344555566678999999999999998754
No 38
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=97.70 E-value=0.00026 Score=57.32 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=64.1
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+-....|..-+-. - ...+.+..|
T Consensus 89 ~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g-~---------------~~~l~~~ig- 149 (255)
T PRK09674 89 QAFNKPLIAAVNGYALGAGCELALLC--DIVIAGENARFGLPEITLGIMPGAG-G---------------TQRLIRSVG- 149 (255)
T ss_pred HhCCCCEEEEECCEeehHHHHHHHhC--CEEEecCCCEEeCchhhcCCCCCcc-H---------------HHHHHHHhC-
Confidence 35789999999999999999999999 5899999998877444433211110 0 001112223
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....|+++||+++||||+|..+.
T Consensus 150 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK09674 150 -KSLASQMVLTGESITAQQAQQAGLVSEVFPPE 181 (255)
T ss_pred -HHHHHHHHHcCCccCHHHHHHcCCCcEecChH
Confidence 22334455555669999999999999998764
No 39
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=97.69 E-value=0.00035 Score=56.75 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=63.8
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+-....|..-+-. ... .+.+..|
T Consensus 92 ~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g-~~~---------------~l~~~vg-- 151 (259)
T PRK06494 92 DLDKPIIAAVNGVAMGGGFELALAC--DLIVAAENATFALPEPRVGLAALAG-GLH---------------RLPRQIG-- 151 (259)
T ss_pred cCCCCEEEEECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccCCCCCch-HHH---------------HHHHHcC--
Confidence 3578999999999999999999999 5899999998877444333211111 000 1122233
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|..+.
T Consensus 152 ~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (259)
T PRK06494 152 LKRAMGMILTGRRVTAREGLELGFVNEVVPAG 183 (259)
T ss_pred HHHHHHHHHcCCcCCHHHHHHcCCCcEecCHh
Confidence 33334455566689999999999999998753
No 40
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=97.66 E-value=0.0002 Score=58.41 Aligned_cols=90 Identities=12% Similarity=0.057 Sum_probs=65.4
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.++++|.+..+..|..- |...-+. +..
T Consensus 106 ~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------~~i- 164 (272)
T PRK06210 106 ALRKPVIAAINGACAGIGLTHALMC--DVRFAADGAKFTTAFARRGLIAEHGISWILP------------------RLV- 164 (272)
T ss_pred hCCCCEEEEECCeeehHHHHHHHhC--CEEEEeCCCEEechHHhcCCCCCCchhhhhH------------------hhh-
Confidence 4689999999999999999999999 5799999999988655533221 2111111 111
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
......+++-....++|+||+++||||+|..+.
T Consensus 165 -g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 197 (272)
T PRK06210 165 -GHANALDLLLSARTFYAEEALRLGLVNRVVPPD 197 (272)
T ss_pred -CHHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 234455666667778999999999999998653
No 41
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=97.66 E-value=0.00032 Score=56.97 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=62.1
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+=....|..- |...- +.+..
T Consensus 89 ~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~~~i 148 (255)
T PRK08150 89 QYGRVPVIAALHGAVVGGGLELASAA--HIRVADESTYFALPEGQRGIFVGGGGSVR------------------VPRLI 148 (255)
T ss_pred HhCCCCEEEEECCEEEcHHHHHHHhC--CEEEEeCCCEEeccccccCCCCCccHHHH------------------HHHHh
Confidence 35689999999999999999999999 5799999998876322222111 11111 11112
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
| ...-.+++-....|+++||+++||||+|..+.
T Consensus 149 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK08150 149 G--VARMTDMMLTGRVYDAQEGERLGLAQYLVPAG 181 (255)
T ss_pred C--HHHHHHHHHcCCcCCHHHHHHcCCccEeeCch
Confidence 2 22234444455678999999999999998864
No 42
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=97.64 E-value=0.00037 Score=56.50 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=63.9
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.++++|-+.....|..- |...-+ .+..|
T Consensus 96 ~~~kpvIAav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~vg 155 (260)
T PRK07511 96 AFPKPVIAAVEGAAAGAGFSLALAC--DLLVAARDAKFVMAYVKVGLTPDGGGSWFL------------------ARALP 155 (260)
T ss_pred cCCCCEEEEECCeeehHHHHHHHhC--CEEEeeCCCEEeccccccCcCCCchHHHHH------------------HHHhC
Confidence 4689999999999999999999999 5899999998887443323211 111111 11112
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|.++.
T Consensus 156 --~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 187 (260)
T PRK07511 156 --RQLATELLLEGKPISAERLHALGVVNRLAEPG 187 (260)
T ss_pred --HHHHHHHHHhCCCCCHHHHHHcCCccEeeCch
Confidence 33345556566789999999999999998764
No 43
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=97.63 E-value=0.0002 Score=58.27 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=61.7
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~--~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||...+-|.|.+.|.-|++++ +.|++.++++|.+-...+|.. .|...- +.+..|
T Consensus 101 ~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G~~p~~g~~~~------------------l~~~vG 160 (266)
T PRK09245 101 NLEVPVIAAVNGPAIGAGCDLACMC--DIRIASETARFAESFVKLGLIPGDGGAWL------------------LPRIIG 160 (266)
T ss_pred cCCCCEEEEECCEeecHHHHHHHhC--CEEEecCCCEEcccccccCcCCCcchhhh------------------HHHHhh
Confidence 4688999999999999999999999 589999999887644333221 111111 111112
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....|+++||+++||||+|..+.
T Consensus 161 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK09245 161 --MARAAEMAFTGDAIDAATALEWGLVSRVVPAD 192 (266)
T ss_pred --HHHHHHHHHcCCCcCHHHHHHcCCcceecCHH
Confidence 12233444455689999999999999998754
No 44
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=97.62 E-value=0.00033 Score=56.88 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=63.8
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+ |.+ ..|-+...- . ..+.+..|
T Consensus 98 ~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~--pe~--~~G~p~~~~-----~--------~~l~~~iG-- 156 (256)
T PRK06143 98 HFPVPVIARIPGWCLGGGLELAAAC--DLRIAAHDAQFGM--PEV--RVGIPSVIH-----A--------ALLPRLIG-- 156 (256)
T ss_pred hCCCCEEEEECCEEeehhHHHHHhC--CEEEecCCCEEeC--Ccc--ccCCCCccH-----H--------HHHHHhcC--
Confidence 4689999999999999999999999 5799999998877 442 122111100 0 11222233
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.....+++-....++|+||+++||||+|.++.
T Consensus 157 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 188 (256)
T PRK06143 157 WARTRWLLLTGETIDAAQALAWGLVDRVVPLA 188 (256)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCcCeecCHH
Confidence 23445556666789999999999999998754
No 45
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=97.61 E-value=0.00039 Score=56.50 Aligned_cols=91 Identities=12% Similarity=0.037 Sum_probs=63.7
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~--~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+-...+|.. .|... .+.+..|
T Consensus 98 ~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~vG 157 (263)
T PRK07799 98 RLTKPLIAAVEGPAIAGGTEILQGT--DIRVAGESAKFGISEAKWSLFPMGGSAV------------------RLVRQIP 157 (263)
T ss_pred cCCCCEEEEECCeEeccHHHHHHhC--CEEEecCCCEecCcccccCcCCCccHHH------------------HHHHHhC
Confidence 4688999999999999999999999 589999999877643332211 11110 1111222
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCch
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 115 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~ 115 (148)
.....+++-....|+++||+++||||+|.++..
T Consensus 158 --~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 190 (263)
T PRK07799 158 --YTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQ 190 (263)
T ss_pred --HHHHHHHHHcCCCCCHHHHHHcCCccEecCcch
Confidence 233455565666799999999999999987653
No 46
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=97.60 E-value=0.00039 Score=56.48 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=61.7
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.++++|-+ |.+. .|-..+.-- ...+- +..|
T Consensus 92 ~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~--pe~~--~G~~p~~g~----~~~l~--------~~vg-- 151 (261)
T PRK03580 92 DLDKPVIAAVNGYAFGGGFELALAA--DFIVCADNASFAL--PEAK--LGIVPDSGG----VLRLP--------KRLP-- 151 (261)
T ss_pred hCCCCEEEEECCeeehHHHHHHHHC--CEEEecCCCEEeC--cccc--cCcCCCccH----HHHHH--------HHhC--
Confidence 4688999999999999999999999 5799999998765 4421 121111100 00001 1112
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.....+++-....++++||+++||||+|..+.
T Consensus 152 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (261)
T PRK03580 152 PAIANEMVMTGRRMDAEEALRWGIVNRVVPQA 183 (261)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCCcEecCHh
Confidence 23344444455689999999999999998754
No 47
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=97.60 E-value=0.00044 Score=55.89 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=61.0
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.++++|-+.....|..- |...-+. +..|
T Consensus 94 ~~~kp~Iaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~------------------~~~G 153 (259)
T PRK06688 94 ALPKPVVAAVNGPAVGVGVSLALAC--DLVYASESAKFSLPFAKLGLCPDAGGSALLP------------------RLIG 153 (259)
T ss_pred cCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEecCchhhcCCCCCcchhhHHH------------------HHhh
Confidence 4688999999999999999999999 5899999998887544433211 1111111 1111
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++--...++++||+++||||+|.++.
T Consensus 154 --~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~ 185 (259)
T PRK06688 154 --RARAAEMLLLGEPLSAEEALRIGLVNRVVPAA 185 (259)
T ss_pred --HHHHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence 11222333334469999999999999998753
No 48
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=97.59 E-value=0.00031 Score=57.15 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=63.9
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
..++.||.+.+-|.|.+.|.-|.+++ +.|++.+++.|-+..+..|..- |...-+ .+..
T Consensus 100 ~~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~~e~~lG~~p~~g~~~~l------------------~~~v 159 (266)
T PRK05981 100 RNLPCPIVTAVNGPAAGVGMSFALMG--DLILCARSAYFLQAFRRIGLVPDGGSTWLL------------------PRLV 159 (266)
T ss_pred HhCCCCEEEEECCEeehHHHHHHHhC--CEEEecCCCEEechHhhcCCCCCccHHHHH------------------HHHh
Confidence 35689999999999999999999999 5899999999887665543221 211111 1111
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
| .....+++-....|+++||+++||||+|.++.
T Consensus 160 g--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK05981 160 G--KARAMELSLLGEKLPAETALQWGLVNRVVDDA 192 (266)
T ss_pred H--HHHHHHHHHhCCCcCHHHHHHcCCceEeeCHh
Confidence 1 12234444455679999999999999998754
No 49
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=97.59 E-value=0.00035 Score=57.90 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=63.1
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||...+-|.|.+.|.-|++++ +.|++.++++|-+....+|..- |...-+ .+..|
T Consensus 111 ~~pkPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~r~vG 170 (296)
T PRK08260 111 DSLKPVIAAVNGPAVGVGATMTLAM--DIRLASTAARFGFVFGRRGIVPEAASSWFL------------------PRLVG 170 (296)
T ss_pred hCCCCEEEEECCeeehHhHHHHHhC--CEEEeeCCCEEecchhhcCcCCCcchhhhH------------------HHhhC
Confidence 4688999999999999999999999 5899999998887544433211 111111 11112
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|.++.
T Consensus 171 --~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~ 202 (296)
T PRK08260 171 --LQTALEWVYSGRVFDAQEALDGGLVRSVHPPD 202 (296)
T ss_pred --HHHHHHHHHcCCccCHHHHHHCCCceeecCHH
Confidence 23334555555669999999999999998754
No 50
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=97.59 E-value=0.00019 Score=59.68 Aligned_cols=100 Identities=24% Similarity=0.191 Sum_probs=75.3
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGR--SSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~--~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
++.||..-+-|+|-.-|.-|.+.+ +-|||.++|.|+.-++.+|. .+|-..-+-. -.|
T Consensus 126 ~~KPvIaainG~AlgGG~ELalmC--Dirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r------------------~vG- 184 (290)
T KOG1680|consen 126 LKKPVIAAINGFALGGGLELALMC--DIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPR------------------IVG- 184 (290)
T ss_pred cccceeEeeeceeeccchhhhhhc--ceEeccCCCeecccccccCCccCCCchhhHHH------------------HhC-
Confidence 688999999999999999999999 47999999999998877653 3343333322 112
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCchhhhchhhHHH
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRDYDM 125 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~~~~~~~~~~ 125 (148)
...-.+++-....++++||++.|||++|....+.+-+...|-+
T Consensus 185 -~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~ 227 (290)
T KOG1680|consen 185 -KSRALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAE 227 (290)
T ss_pred -hHHHHHHHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHH
Confidence 2334566777888999999999999999988775555555443
No 51
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=97.59 E-value=0.00048 Score=55.79 Aligned_cols=91 Identities=19% Similarity=0.145 Sum_probs=61.8
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~--~G~~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+=....|.. .|... .+.+..
T Consensus 91 ~~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~~~v 150 (257)
T PRK05862 91 ARIRKPVIAAVAGYALGGGCELAMMC--DIIIAADTAKFGQPEIKLGVLPGMGGSQ------------------RLTRAV 150 (257)
T ss_pred HhCCCCEEEEEccEEeHHHHHHHHHC--CEEEEeCCCEEeCchhccCcCCCccHHH------------------HHHHHh
Confidence 35689999999999999999999999 589999999877632222211 11111 111222
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
|. ..-.+++-....++++||+++||||+|..+.
T Consensus 151 G~--~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK05862 151 GK--AKAMDLCLTGRMMDAAEAERAGLVSRVVPAD 183 (257)
T ss_pred CH--HHHHHHHHhCCccCHHHHHHcCCCCEeeCHh
Confidence 21 2233444455589999999999999998754
No 52
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=97.58 E-value=0.00029 Score=57.00 Aligned_cols=89 Identities=15% Similarity=0.182 Sum_probs=63.0
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+ |.+. .|-.... ..+.+..|
T Consensus 92 ~~~kPvIAav~G~a~GgG~~Lal~c--D~ria~~~a~f~~--pe~~--~G~~g~~---------------~~l~~~vg-- 148 (249)
T PRK07938 92 ECAVPVIAAVHGFCLGGGIGLVGNA--DVIVASDDATFGL--PEVD--RGALGAA---------------THLQRLVP-- 148 (249)
T ss_pred hCCCCEEEEEcCEEeehHHHHHHhC--CEEEEeCCCEeeC--ccce--ecCchhH---------------HHHHHhcC--
Confidence 4688999999999999999999999 5799999998876 5421 2211000 01122222
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|..+.
T Consensus 149 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 180 (249)
T PRK07938 149 QHLMRALFFTAATITAAELHHFGSVEEVVPRD 180 (249)
T ss_pred HHHHHHHHHhCCcCCHHHHHHCCCccEEeCHH
Confidence 33345555566789999999999999998753
No 53
>PRK10949 protease 4; Provisional
Probab=97.58 E-value=0.0009 Score=61.22 Aligned_cols=106 Identities=21% Similarity=0.184 Sum_probs=75.1
Q ss_pred cCceEEEehhhhHHHHHHHHhcCCCCceeecccCee------eeecC-------------------CCC--CCCC-CHHH
Q 032040 5 KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST------KLYLP-------------------VVG--RSSG-PVTD 56 (148)
Q Consensus 5 ~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~i------MIH~p-------------------~~~--~~~G-~~~d 56 (148)
+.||.+...++|+|.|=.|.++++ +-++.|++.. +.|.- ... .... +..+
T Consensus 396 gKPVvas~~~~aASggY~iA~aad--~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~ 473 (618)
T PRK10949 396 GKPVVVSMGGMAASGGYWISTPAN--YIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEF 473 (618)
T ss_pred CCcEEEEECCCCccHHHHHHHhcC--EEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHH
Confidence 479999999999999999999995 5688897642 23321 000 0001 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcCCceeeecC
Q 032040 57 MWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 113 (148)
Q Consensus 57 l~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~ 113 (148)
-+..-..++...+.+.+..++.-+++.+++++..+ ..-+|+++|++.||||+|..-
T Consensus 474 ~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~-Grv~tg~~A~~~GLVD~lG~~ 529 (618)
T PRK10949 474 QQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDF 529 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhc-CCcccHHHHHHcCCCccCCCH
Confidence 23334556666777888888888999999987654 467899999999999999663
No 54
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=97.57 E-value=0.00032 Score=56.73 Aligned_cols=93 Identities=16% Similarity=0.089 Sum_probs=62.6
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
..++.||...+-|.|.+.|.-|.+++ +.|++.++++|.+.....|..-+-.... .+.+..|
T Consensus 94 ~~~~kPvIAav~G~a~GgG~~la~ac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~----------------~l~~~~g- 154 (251)
T PRK06023 94 AEAEKPIVSGVDGLAIGIGTTIHLHC--DLTFASPRSLFRTPFVDLALVPEAGSSL----------------LAPRLMG- 154 (251)
T ss_pred HhCCCCEEEEeCCceecHHHHHHHhC--CEEEEeCCCEecCcccccCCCCCchHHH----------------HHHHHHh-
Confidence 35789999999999999999999999 5899999999987443323211111000 0111112
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.....+++-....++++||+++||||+|.++.
T Consensus 155 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (251)
T PRK06023 155 -HQRAFALLALGEGFSAEAAQEAGLIWKIVDEE 186 (251)
T ss_pred -HHHHHHHHHhCCCCCHHHHHHcCCcceeeCHH
Confidence 22233344444579999999999999998753
No 55
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=97.56 E-value=0.00041 Score=56.71 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=64.5
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+.....|..- |...-+. +..
T Consensus 103 ~~~~kPvIaav~G~a~GgG~~Lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------~~v 162 (269)
T PRK06127 103 ADYAKPTIACIRGYCIGGGMGIALAC--DIRIAAEDSRFGIPAARLGLGYGYDGVKNLV------------------DLV 162 (269)
T ss_pred HhCCCCEEEEECCEEecHHHHHHHhC--CEEEeeCCCEeeCchhhhCCCCCccHHHHHH------------------HHh
Confidence 35688999999999999999999999 5899999998888554433221 1111111 111
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
| .....+++-....++++||+++||||+|..+.
T Consensus 163 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 195 (269)
T PRK06127 163 G--PSAAKDLFYTARRFDAAEALRIGLVHRVTAAD 195 (269)
T ss_pred C--HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHH
Confidence 2 23344555556679999999999999998753
No 56
>PLN02888 enoyl-CoA hydratase
Probab=97.53 E-value=0.00052 Score=56.06 Aligned_cols=91 Identities=11% Similarity=0.097 Sum_probs=61.4
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
..++.||.+.+-|.|.+.|..|++++ +.|++.+++.|.+=....|..- |...-+ .+..
T Consensus 96 ~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v 155 (265)
T PLN02888 96 ERCRKPIIGAINGFAITAGFEIALAC--DILVASRGAKFIDTHAKFGIFPSWGLSQKL------------------SRII 155 (265)
T ss_pred HhCCCCEEEEECCeeechHHHHHHhC--CEEEecCCCEecCccccccCCCCccHhhHH------------------HHHh
Confidence 34688999999999999999999999 5899999998876322222111 111111 1112
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
| ...-.+++-....|+++||+++||||+|..+.
T Consensus 156 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 188 (265)
T PLN02888 156 G--ANRAREVSLTAMPLTAETAERWGLVNHVVEES 188 (265)
T ss_pred C--HHHHHHHHHhCCccCHHHHHHcCCccEeeChH
Confidence 2 22233344444578999999999999998754
No 57
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=97.53 E-value=0.00041 Score=56.45 Aligned_cols=92 Identities=14% Similarity=0.239 Sum_probs=62.4
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLP-VVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p-~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.++++|-+=.. .+|..-+-. ... .+.+..|
T Consensus 100 ~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~~G~~p~~g-~~~---------------~l~~~vG- 160 (262)
T PRK06144 100 QLRVPTIAAIAGACVGGGAAIAAAC--DLRIATPSARFGFPIARTLGNCLSMS-NLA---------------RLVALLG- 160 (262)
T ss_pred hCCCCEEEEECCeeeehHHHHHHhC--CEEEecCCCEeechhHHhccCCCCcc-HHH---------------HHHHHhC-
Confidence 4688999999999999999999999 5899999998865211 112111100 000 1222222
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.....+++-....++++||+++||||+|..+.
T Consensus 161 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (262)
T PRK06144 161 -AARVKDMLFTARLLEAEEALAAGLVNEVVEDA 192 (262)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHcCCcCeecCHH
Confidence 23344555566789999999999999998763
No 58
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=97.53 E-value=0.00039 Score=56.80 Aligned_cols=89 Identities=18% Similarity=0.243 Sum_probs=61.7
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~--~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.++++|-+.....|.. .|...-+ .+..|
T Consensus 107 ~~~kpvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~~G 166 (272)
T PRK06142 107 DCRKPVIAAVQGWCIGGGVDLISAC--DMRYASADAKFSVREVDLGMVADVGSLQRL------------------PRIIG 166 (272)
T ss_pred hCCCCEEEEecCccccchHHHHHhC--CEEEecCCCeecchhhhhCCCCCchHHHHH------------------HHHhC
Confidence 4688999999999999999999999 579999999876644333322 1211111 11122
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecC
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 113 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~ 113 (148)
.....+++-...-++++||+++||||+|..+
T Consensus 167 --~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~ 197 (272)
T PRK06142 167 --DGHLRELALTGRDIDAAEAEKIGLVNRVYDD 197 (272)
T ss_pred --HHHHHHHHHhCCCcCHHHHHHcCCccEecCC
Confidence 1233444445566999999999999999875
No 59
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=97.53 E-value=0.00041 Score=56.19 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=61.5
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|..|++++ +.|++.++++|.+-....|..- |...-+ .+..|
T Consensus 91 ~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~pe~~lG~~p~~g~~~~l------------------~~~vG 150 (256)
T TIGR02280 91 ALPLPVVCAVNGVAAGAGANLALAC--DIVLAAESARFIQAFAKIGLIPDSGGTWSL------------------PRLVG 150 (256)
T ss_pred hCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEEeChhhhcCCCCCccHHHHH------------------HHHhC
Confidence 4689999999999999999999999 5899999998876333222111 111111 11112
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|..+.
T Consensus 151 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 182 (256)
T TIGR02280 151 --RARAMGLAMLGEKLDARTAASWGLIWQVVDDA 182 (256)
T ss_pred --HHHHHHHHHcCCCCCHHHHHHcCCcceeeChH
Confidence 12223444455579999999999999998764
No 60
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=97.52 E-value=0.00035 Score=56.62 Aligned_cols=90 Identities=13% Similarity=0.133 Sum_probs=62.3
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~--~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+=....|.. .|...- +.+..|
T Consensus 98 ~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~~~vG 157 (260)
T PRK05980 98 AFPKPVIAAVNGLAFGGGCEITEAV--HLAIASERALFAKPEIRLGMPPTFGGTQR------------------LPRLAG 157 (260)
T ss_pred hCCCCEEEEEcCEEEhhhhHHhHhC--CEEEecCCCEecCcccccCCCCCchHhhH------------------HHhhcC
Confidence 4689999999999999999999999 579999999887632222221 111111 111222
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|..+.
T Consensus 158 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 189 (260)
T PRK05980 158 --RKRALELLLTGDAFSAERALEIGLVNAVVPHE 189 (260)
T ss_pred --HHHHHHHHHcCCccCHHHHHHcCCCCcccCHH
Confidence 22334555555679999999999999998754
No 61
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=97.52 E-value=0.00041 Score=57.76 Aligned_cols=89 Identities=8% Similarity=-0.058 Sum_probs=64.0
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+-...+ .|-... ..+ ..+. .
T Consensus 110 ~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~A~f~~pe~~l---~G~~~~-----~~~-----------~~~v--G 166 (298)
T PRK12478 110 RASKPVIAQVHGWCVGGASDYALCA--DIVIASDDAVIGTPYSRM---WGAYLT-----GMW-----------LYRL--S 166 (298)
T ss_pred hCCCCEEEEEccEEehhHHHHHHHC--CEEEEcCCcEEecccccc---ccCCch-----hHH-----------HHHh--h
Confidence 4689999999999999999999999 579999999888733331 121100 000 0112 2
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....|+|+||+++||||+|..+.
T Consensus 167 ~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~ 198 (298)
T PRK12478 167 LAKVKWHSLTGRPLTGVQAAEAELINEAVPFE 198 (298)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 34455666677889999999999999998753
No 62
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=97.51 E-value=0.00043 Score=56.26 Aligned_cols=90 Identities=18% Similarity=0.146 Sum_probs=62.2
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+-....|..- |...-+. +..|
T Consensus 95 ~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~------------------~~vG 154 (259)
T TIGR01929 95 TCPKPVIAMVNGYAIGGGHVLHVVC--DLTIAAENARFGQTGPKVGSFDGGYGSSYLA------------------RIVG 154 (259)
T ss_pred hCCCCEEEEEcCEEehHHHHHHHhC--CEEEecCCCEecCcccccccCCCccHHHHHH------------------HHhH
Confidence 4688999999999999999999999 5799999999888555433221 2111111 1111
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-...-++++||+++||||+|..+.
T Consensus 155 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (259)
T TIGR01929 155 --QKKAREIWFLCRQYDAEQALDMGLVNTVVPLA 186 (259)
T ss_pred --HHHHHHHHHhCCccCHHHHHHcCCcccccCHH
Confidence 11223344444579999999999999998753
No 63
>PLN02921 naphthoate synthase
Probab=97.51 E-value=0.0006 Score=57.74 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=64.5
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||...+-|.|.+.|..|.+++ +.|++.+++.|-+..+.+|..- |...- | .+..|
T Consensus 159 ~~~kPvIAaVnG~a~GGG~~Lalac--D~riA~~~A~f~~pe~~~Gl~p~~gg~~~-------L-----------~rliG 218 (327)
T PLN02921 159 RLPKPVIAMVAGYAVGGGHILHMVC--DLTIAADNAVFGQTGPKVGSFDAGYGSSI-------M-----------ARLVG 218 (327)
T ss_pred hCCCCEEEEECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccCCCCCccHHHH-------H-----------HHHhC
Confidence 4688999999999999999999999 5899999998888666544221 11111 1 11112
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....|+|+||+++||||+|....
T Consensus 219 --~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~ 250 (327)
T PLN02921 219 --QKKAREMWFLARFYTASEALKMGLVNTVVPLD 250 (327)
T ss_pred --HHHHHHHHHcCCcCCHHHHHHCCCceEEeCHH
Confidence 23334555556689999999999999998754
No 64
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=97.50 E-value=0.00059 Score=55.38 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=61.9
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.++++|.+-....| -..+.-- . .+.+..|
T Consensus 97 ~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G----l~p~~g~--~-----------~l~~~vg-- 155 (262)
T PRK05995 97 RCPKPVIARVHGDAYAGGMGLVAAC--DIAVAADHAVFCLSEVRLG----LIPATIS--P-----------YVIRAMG-- 155 (262)
T ss_pred cCCCCEEEEECCEEEhhHHHHHHhC--CEEEeeCCCEEeCcccccc----cCccchH--H-----------HHHHHhC--
Confidence 4688999999999999999999999 5799999998876333222 1111110 0 0112222
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-...-++++||+++||||+|..+.
T Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (262)
T PRK05995 156 ERAARRYFLTAERFDAAEALRLGLVHEVVPAE 187 (262)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCeecCHH
Confidence 23334445555668999999999999998643
No 65
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=97.50 E-value=0.0007 Score=55.01 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=61.7
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+=...+|..- |...- +.+..|
T Consensus 96 ~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~~~vG 155 (261)
T PRK08138 96 QCPKPVIAAVNGYALGGGCELAMHA--DIIVAGESASFGQPEIKVGLMPGAGGTQR------------------LVRAVG 155 (261)
T ss_pred hCCCCEEEEEccEEEcHHHHHHHhC--CEEEecCCCEeeCcccccccCCCCcHHHH------------------HHHHhC
Confidence 4688999999999999999999999 5799999998776333222111 11111 112222
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|..+.
T Consensus 156 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (261)
T PRK08138 156 --KFKAMRMALTGCMVPAPEALAIGLVSEVVEDE 187 (261)
T ss_pred --HHHHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence 22334445455579999999999999998764
No 66
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=97.49 E-value=0.0006 Score=55.99 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=62.2
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+.|.|.+.|.-|++++ +.|++.++++|.+ |.+. .|-..+.-- ...+.+..|
T Consensus 102 ~~~kPvIAav~G~a~GgG~~lal~c--D~~ia~~~a~f~~--pe~~--~Gl~p~~g~------------~~~l~~~iG-- 161 (275)
T PRK09120 102 WYQKPTIAMVNGWCFGGGFSPLVAC--DLAIAADEAQFGL--SEIN--WGIPPGGGV------------SKAMADTVG-- 161 (275)
T ss_pred hCCCCEEEEEcCEEechhHHHHHhC--CEEEEeCCcEecC--Cccc--cCCCCCcch------------HHHHHHHcC--
Confidence 4689999999999999999999999 5799999998877 4421 121111000 011122223
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....|+++||+++||||+|..+.
T Consensus 162 ~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~ 193 (275)
T PRK09120 162 HRDALYYIMTGETFTGRKAAEMGLVNESVPLA 193 (275)
T ss_pred HHHHHHHHhcCCccCHHHHHHcCCcceecCHH
Confidence 22334445555679999999999999998754
No 67
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=97.48 E-value=0.00059 Score=55.14 Aligned_cols=92 Identities=16% Similarity=0.125 Sum_probs=63.7
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|..|.+++ +.|++.++++|-+.....|..-+-.. . . .+.++.|
T Consensus 92 ~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~Gl~p~~g~-~-------~--------~l~~~~g-- 151 (249)
T PRK07110 92 NCPIPVIAAMQGHAIGGGLVLGLYA--DIVVLSRESVYTANFMKYGFTPGMGA-T-------A--------ILPEKLG-- 151 (249)
T ss_pred cCCCCEEEEecCceechHHHHHHhC--CEEEEeCCCEecCchhccCCCCCchH-H-------H--------HHHHHhC--
Confidence 5688999999999999999999999 58999999987653332221111100 0 0 1111222
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-...-++++||+++||||+|.++.
T Consensus 152 ~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~ 183 (249)
T PRK07110 152 LALGQEMLLTARYYRGAELKKRGVPFPVLPRA 183 (249)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCeEEeChH
Confidence 33455666677789999999999999998754
No 68
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=97.48 E-value=0.00076 Score=54.74 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=61.9
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||...+-|.|.+.|.-|++++ +.|++.++++|-+-....|..- |...-+ .+..|
T Consensus 93 ~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~iG 152 (258)
T PRK09076 93 AFRGVSIAAINGYAMGGGLECALAC--DIRIAEEQAQMALPEASVGLLPCAGGTQNL------------------PWLVG 152 (258)
T ss_pred hCCCCEEEEECCEEecHHHHHHHhC--CEEEecCCCEeeCcccccCCCCCccHHHHH------------------HHHhC
Confidence 4689999999999999999999999 5899999998877333322211 111111 11122
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|..+.
T Consensus 153 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 184 (258)
T PRK09076 153 --EGWAKRMILCGERVDAATALRIGLVEEVVEKG 184 (258)
T ss_pred --HHHHHHHHHcCCcCCHHHHHHCCCCceecCch
Confidence 22223444455678999999999999998764
No 69
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=97.48 E-value=0.0007 Score=54.86 Aligned_cols=92 Identities=18% Similarity=0.165 Sum_probs=62.1
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.++++|.+-....|.. .+.-- ...+.+..|
T Consensus 95 ~~~kPvIaav~G~a~GgG~~lal~c--D~~va~~~a~f~~pe~~~Gl~----p~~g~------------~~~l~~~vG-- 154 (260)
T PRK05809 95 NLDKPVIAAINGFALGGGCELSMAC--DIRIASEKAKFGQPEVGLGIT----PGFGG------------TQRLARIVG-- 154 (260)
T ss_pred cCCCCEEEEEcCeeecHHHHHHHhC--CEEEeeCCCEEeCcccccCCC----CCccH------------HHHHHHHhC--
Confidence 4688999999999999999999999 579999999887743332211 11100 001112222
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|..+.
T Consensus 155 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (260)
T PRK05809 155 PGKAKELIYTGDMINAEEALRIGLVNKVVEPE 186 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCCCcccChH
Confidence 12334445455678999999999999998753
No 70
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=97.47 E-value=0.00084 Score=54.47 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=62.1
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~--~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
++.||.+.+-|.|.+.|.-|++++ +.|++.++++|-+-....|.. .|... .+.+..|
T Consensus 92 ~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~~~iG- 150 (254)
T PRK08259 92 LSKPVIAAVSGYAVAGGLELALWC--DLRVAEEDAVFGVFCRRWGVPLIDGGTV------------------RLPRLIG- 150 (254)
T ss_pred CCCCEEEEECCEEEhHHHHHHHhC--CEEEecCCCEecCcccccCCCCCccHHH------------------HHHHHhC-
Confidence 578999999999999999999999 589999999876532221211 11110 1112223
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....|+++||+++||||+|..+.
T Consensus 151 -~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~ 182 (254)
T PRK08259 151 -HSRAMDLILTGRPVDADEALAIGLANRVVPKG 182 (254)
T ss_pred -HHHHHHHHHcCCccCHHHHHHcCCCCEeeChh
Confidence 23335555566689999999999999998764
No 71
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=97.46 E-value=0.00043 Score=55.99 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=63.0
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.++++|.+ |.+. .|-..+.-- .. .+.+..|
T Consensus 96 ~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~--pe~~--~Gl~p~~g~----~~--------~l~~~vg-- 155 (255)
T PRK07260 96 QLPKPVIMCVDGAVAGAAANMAVAA--DFCIASTKTKFIQ--AFVG--VGLAPDAGG----LF--------LLTRAIG-- 155 (255)
T ss_pred cCCCCEEEEecCeeehhhHHHHHhC--CEEEEeCCCEEec--hHhh--cCCCCCCch----hh--------hhHHhhC--
Confidence 4789999999999999999999999 5799999998776 4421 111111000 00 1111122
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.....+++-....+|++||+++||||+|.++.
T Consensus 156 ~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~ 187 (255)
T PRK07260 156 LNRATHLAMTGEALTAEKALEYGFVYRVAESE 187 (255)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCcceecCHh
Confidence 23345666667799999999999999998754
No 72
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=97.46 E-value=0.00079 Score=54.91 Aligned_cols=93 Identities=12% Similarity=0.040 Sum_probs=63.0
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+ |.. ..|-..+.- ....+.+..|
T Consensus 91 ~~~~kPvIAaV~G~a~GgG~~lalac--D~~ia~~~a~f~~--pe~--~~Gl~p~~g------------~~~~l~r~vG- 151 (258)
T PRK06190 91 PAMRKPVIGAINGAAVTGGLELALAC--DILIASERARFAD--THA--RVGILPGWG------------LSVRLPQKVG- 151 (258)
T ss_pred HhCCCCEEEEECCEeecHHHHHHHhC--CEEEEeCCCEEEC--ccc--ccCcCCCcc------------HHHHHHHHhC-
Confidence 35688999999999999999999999 5899999998875 442 112111110 0001111222
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|..+.
T Consensus 152 -~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 183 (258)
T PRK06190 152 -IGRARRMSLTGDFLDAADALRAGLVTEVVPHD 183 (258)
T ss_pred -HHHHHHHHHhCCccCHHHHHHcCCCeEecCHh
Confidence 33444555566689999999999999998754
No 73
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=97.45 E-value=0.00076 Score=55.29 Aligned_cols=92 Identities=22% Similarity=0.193 Sum_probs=62.1
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+=.+.+|..-+-. -.. .| .+..|
T Consensus 105 ~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~~-~~~----~l-----------~~~vG-- 164 (273)
T PRK07396 105 TCPKPVIAMVAGYAIGGGHVLHLVC--DLTIAADNAIFGQTGPKVGSFDGGY-GAS----YL-----------ARIVG-- 164 (273)
T ss_pred hCCCCEEEEECCEEehHHHHHHHhC--CEEEeeCCcEEecccccccccCCch-HHH----HH-----------HHHhh--
Confidence 4688999999999999999999999 5899999998877444433221110 000 01 11112
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.....+++-....|+++||+++||||+|..+.
T Consensus 165 ~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~ 196 (273)
T PRK07396 165 QKKAREIWFLCRQYDAQEALDMGLVNTVVPLA 196 (273)
T ss_pred HHHHHHHHHhCCCcCHHHHHHcCCcCeecCHH
Confidence 12234444455679999999999999998753
No 74
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=97.45 E-value=0.00069 Score=55.83 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=64.6
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+-....|.. ..+.. ....+.+..|
T Consensus 104 ~~~~kPvIAaV~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~lGl~---~p~~~------------~~~~l~~~~G- 165 (278)
T PLN03214 104 LRSRLATVCAIRGACPAGGCAVSLCC--DYRLQTTEGTMGLNEVALGIP---VPKFW------------ARLFMGRVID- 165 (278)
T ss_pred HcCCCCEEEEEcCcccchHHHHHHhC--CEEEecCCCEecCcHHHhCCC---CCChh------------HHHHHHHhcC-
Confidence 34688999999999999999999999 589999999887733332211 01110 0012233333
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-...-|+++||+++||||+|....
T Consensus 166 -~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~ 197 (278)
T PLN03214 166 -RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAA 197 (278)
T ss_pred -HHHHHHHHHcCCccCHHHHHHcCCCcEecChH
Confidence 34444556666679999999999999998753
No 75
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=97.45 E-value=0.00059 Score=55.38 Aligned_cols=90 Identities=17% Similarity=0.068 Sum_probs=61.5
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.++++|.+-....|..- |...-+ .+..|
T Consensus 97 ~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G~~p~~g~~~~l------------------~~~vG 156 (262)
T PRK08140 97 ALPLPVIAAVNGVAAGAGANLALAC--DIVLAARSASFIQAFVKIGLVPDSGGTWFL------------------PRLVG 156 (262)
T ss_pred hCCCCEEEEECCeeehhHHHHHHhC--CEEEecCCCEEeccccccCCCCCccHHHHH------------------HHHhC
Confidence 4688999999999999999999999 5899999999876322222111 111111 11111
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.....+++-...-++++||+++||||+|..+.
T Consensus 157 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 188 (262)
T PRK08140 157 --MARALGLALLGEKLSAEQAEQWGLIWRVVDDA 188 (262)
T ss_pred --HHHHHHHHHcCCCcCHHHHHHcCCccEeeChH
Confidence 12334445555679999999999999998754
No 76
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=97.44 E-value=0.00074 Score=54.93 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=63.5
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
..++.||.+.+-|.|.+.|.-|++++ +.|++.++++|-+-.... |-..+.-- . .+..+.|
T Consensus 97 ~~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~pe~~~----Gl~p~~g~--~-----------~~~~~vG- 156 (262)
T PRK07468 97 NDLPKPLIGRIQGQAFGGGVGLISVC--DVAIAVSGARFGLTETRL----GLIPATIS--P-----------YVVARMG- 156 (262)
T ss_pred HcCCCCEEEEECCEEEhHHHHHHHhC--CEEEEeCCCEEeCchhcc----CCCcccch--h-----------hHHhhcc-
Confidence 45789999999999999999999999 579999999876633322 21111100 0 0111222
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.....+++-...-++++||+++||||+|.+..
T Consensus 157 -~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~ 188 (262)
T PRK07468 157 -EANARRVFMSARLFDAEEAVRLGLLSRVVPAE 188 (262)
T ss_pred -HHHHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence 23444566667789999999999999998753
No 77
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=97.43 E-value=0.00084 Score=54.47 Aligned_cols=90 Identities=18% Similarity=0.146 Sum_probs=61.7
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+-....|..- |...-+. +..|
T Consensus 95 ~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~------------------~~vG 154 (260)
T PRK07657 95 QLPQPVIAAINGIALGGGLELALAC--DFRIAAESASLGLTETTLAIIPGAGGTQRLP------------------RLIG 154 (260)
T ss_pred hCCCCEEEEEcCEeechHHHHHHhC--CEEEeeCCCEEcCchhccCcCCCccHHHHHH------------------HHhC
Confidence 5689999999999999999999999 5899999998877443333211 2111111 1111
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|..+.
T Consensus 155 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (260)
T PRK07657 155 --VGRAKELIYTGRRISAQEAKEIGLVEFVVPAH 186 (260)
T ss_pred --HHHHHHHHHhCCCCCHHHHHHcCCCCeecCHH
Confidence 12233444444569999999999999998754
No 78
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=97.43 E-value=0.00031 Score=56.15 Aligned_cols=92 Identities=16% Similarity=0.112 Sum_probs=61.0
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSG-PVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G-~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.+++.|-+-....|..-| -...+ +.+ ..|
T Consensus 88 ~~~kp~Iaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~G~~p~~g~~~~---------l~r--------~~g- 147 (245)
T PF00378_consen 88 NFPKPTIAAVNGHAVGGGFELALAC--DFRIAAEDAKFGFPEVRLGIFPGAGGTFR---------LPR--------LIG- 147 (245)
T ss_dssp HSSSEEEEEESSEEETHHHHHHHHS--SEEEEETTTEEETGGGGGTSSSTSTHHHH---------HHH--------HHH-
T ss_pred hhhhheeeccccccccccccccccc--ceEEeecccceeeeecccCcccccccccc---------cce--------eee-
Confidence 4688999999999999999999999 58999999986553333222111 11110 111 111
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCch
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 115 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~ 115 (148)
.....+++-....++|+||+++||||+|+++..
T Consensus 148 -~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~ 180 (245)
T PF00378_consen 148 -PSRARELLLTGEPISAEEALELGLVDEVVPDEE 180 (245)
T ss_dssp -HHHHHHHHHHTCEEEHHHHHHTTSSSEEESGGG
T ss_pred -cccccccccccccchhHHHHhhcceeEEcCchh
Confidence 111223333345789999999999999998765
No 79
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=97.41 E-value=0.00071 Score=55.11 Aligned_cols=93 Identities=12% Similarity=0.129 Sum_probs=62.5
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
..++.||.+.+-|.|.+.|.-|++++ +.|++.++++|.+=....|...+.. -.. .+.+..|
T Consensus 93 ~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~~~~g-~~~---------------~l~~~vg- 153 (261)
T PRK11423 93 QKFPKPVIAMVEGSVWGGAFELIMSC--DLIIAASTSTFAMTPANLGVPYNLS-GIL---------------NFTNDAG- 153 (261)
T ss_pred HhCCCCEEEEEecEEechHHHHHHhC--CEEEecCCCEecCchhhcCCCCCcc-HHH---------------HHHHHhH-
Confidence 45789999999999999999999999 5799999998766333322111100 010 1111112
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|.++.
T Consensus 154 -~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~ 185 (261)
T PRK11423 154 -FHIVKEMFFTASPITAQRALAVGILNHVVEVE 185 (261)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHcCCcCcccCHH
Confidence 23344445556689999999999999998753
No 80
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=97.39 E-value=0.0008 Score=54.44 Aligned_cols=91 Identities=20% Similarity=0.153 Sum_probs=65.5
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
..++.||.+-+-|.|.+.|.-|++++ +.|++.++++|-+....+|-.- |...-+.+ ..
T Consensus 95 ~~~~kPvIAav~G~a~GgG~eLal~~--D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r------------------~~ 154 (257)
T COG1024 95 ADLPKPVIAAVNGYALGGGLELALAC--DIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPR------------------LL 154 (257)
T ss_pred HhCCCCEEEEEcceEeechhhhhhcC--CeEEecCCcEecCcccccccCCCCcHHHHHHH------------------hc
Confidence 46789999999999999999999999 5899999999998666544333 22211111 11
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
| ...-.+++--..-++++||+++||||+|..+.
T Consensus 155 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 187 (257)
T COG1024 155 G--RGRAKELLLTGEPISAAEALELGLVDEVVPDA 187 (257)
T ss_pred C--HHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCH
Confidence 1 11122255566779999999999999998854
No 81
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=97.39 E-value=0.001 Score=55.03 Aligned_cols=90 Identities=12% Similarity=0.057 Sum_probs=62.0
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.+++.|.+=....| ..| .. .+. +. ...|
T Consensus 116 ~~pkPvIAaVnG~a~GgG~~lalac--D~ria~e~a~f~~pe~~lG-l~~----~~----~~~-l~--------~~iG-- 173 (288)
T PRK08290 116 DLPKPTIAQVQGACIAGGLMLAWVC--DLIVASDDAFFSDPVVRMG-IPG----VE----YFA-HP--------WELG-- 173 (288)
T ss_pred hCCCCEEEEECCEeeHHHHHHHHhC--CEEEeeCCCEecCcccccC-cCc----ch----HHH-HH--------HHhh--
Confidence 4688999999999999999999999 5799999998876222222 212 10 000 00 1112
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|..+.
T Consensus 174 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~ 205 (288)
T PRK08290 174 PRKAKELLFTGDRLTADEAHRLGMVNRVVPRD 205 (288)
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHH
Confidence 23344555555789999999999999998753
No 82
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=97.39 E-value=0.0015 Score=52.87 Aligned_cols=92 Identities=14% Similarity=0.040 Sum_probs=62.7
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||...+-|.|.+.|.-|++++ +.|++.++++|-+ |.+. .|-..+.- ....+.+..|
T Consensus 89 ~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~--pe~~--~Gl~p~~g------------~~~~l~~~vg-- 148 (254)
T PRK08252 89 PPRKPLIAAVEGYALAGGFELALAC--DLIVAARDAKFGL--PEVK--RGLVAAGG------------GLLRLPRRIP-- 148 (254)
T ss_pred cCCCCEEEEECCEEehHHHHHHHhC--CEEEEeCCCEEeC--chhh--cCCCCCch------------HHHHHHHHcC--
Confidence 3678999999999999999999999 5899999998866 4421 12111110 0001122223
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-...-++++||+++||||+|..+.
T Consensus 149 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 180 (254)
T PRK08252 149 YHIAMELALTGDMLTAERAHELGLVNRLTEPG 180 (254)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceecCcc
Confidence 33345555556679999999999999998754
No 83
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=97.39 E-value=0.00086 Score=54.19 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=62.5
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
..++.||...+-|.|.+.|.-|++++ +.|++.++++|-+-...+|..-+-..- ..| .+..|
T Consensus 91 ~~~~kpvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~-----~~l-----------~~~vG- 151 (257)
T PRK07658 91 EKFSKPVIAAIHGAALGGGLELAMSC--HIRFATESAKLGLPELNLGLIPGFAGT-----QRL-----------PRYVG- 151 (257)
T ss_pred HhCCCCEEEEEcCeeeeHHHHHHHhC--CEEEecCCCcccCcccccCCCCCCcHH-----HHH-----------HHHhC-
Confidence 35688999999999999999999999 589999998876633222221111100 001 11112
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|.++.
T Consensus 152 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK07658 152 -KAKALEMMLTSEPITGAEALKWGLVNGVFPEE 183 (257)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHcCCcCeecChh
Confidence 22334555566779999999999999998654
No 84
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=97.38 E-value=0.00094 Score=54.74 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=61.9
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|..|.+++ +.|++.++++|.+-....|.. .+..- .. .+.+..|
T Consensus 109 ~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~Gl~----p~~g~----~~--------~l~~~vG-- 168 (275)
T PLN02664 109 QCRKPVIAAIHGACIGGGVDIVTAC--DIRYCSEDAFFSVKEVDLAIT----ADLGT----LQ--------RLPSIVG-- 168 (275)
T ss_pred hCCCCEEEEECCccccchHHHHHhC--CEEEecCCCEeccHHHhhCCC----CCccH----HH--------HHHHHhC--
Confidence 4689999999999999999999999 579999999887733332211 11110 00 0111122
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecC
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 113 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~ 113 (148)
...-.+++-....++++||+++||||+|..+
T Consensus 169 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 169 YGNAMELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 2233444555568899999999999999875
No 85
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=97.36 E-value=0.00095 Score=54.52 Aligned_cols=90 Identities=12% Similarity=0.034 Sum_probs=59.9
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||...+-|.|.+.|.-|.+++ +.|++.++++|-+=...+|..- |...-+.. ..|
T Consensus 104 ~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~------------------~vG 163 (268)
T PRK07327 104 NCDKPIVSAIHGPAVGAGLVAALLA--DISIAAKDARIIDGHTRLGVAAGDHAAIVWPL------------------LCG 163 (268)
T ss_pred cCCCCEEEEEcCeeeehhhHHHHhC--CEEEecCCCEEeCcccccCCCCCcchhhHHHH------------------HhC
Confidence 4688999999999999999999999 5899999998875222212111 11111110 011
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....|+++||+++||||+|..+.
T Consensus 164 --~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 195 (268)
T PRK07327 164 --MAKAKYYLLLCEPVSGEEAERIGLVSLAVDDD 195 (268)
T ss_pred --HHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 12223344455579999999999999998653
No 86
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=97.36 E-value=0.0013 Score=53.46 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=60.8
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.++++|-+=.+.+|..-+.. -.. .+.+..|.
T Consensus 92 ~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~G~~~~~~-~~~---------------~l~~~vG~- 152 (256)
T TIGR03210 92 DVPKPVIARVQGYAIGGGNVLVTIC--DLTIASEKAQFGQVGPKVGSVDPGY-GTA---------------LLARVVGE- 152 (256)
T ss_pred hCCCCEEEEECCEEehhhHHHHHhC--CEEEEeCCCEEecccccccccCCcc-HHH---------------HHHHHhCH-
Confidence 4688999999999999999999999 5799999998877333322110100 000 11111221
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
..-.+++-....|+++||+++||||+|..+.
T Consensus 153 -~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~ 183 (256)
T TIGR03210 153 -KKAREIWYLCRRYTAQEALAMGLVNAVVPHD 183 (256)
T ss_pred -HHHHHHHHhCCCcCHHHHHHcCCceeeeCHH
Confidence 1222333334579999999999999998753
No 87
>PLN02600 enoyl-CoA hydratase
Probab=97.36 E-value=0.0014 Score=53.07 Aligned_cols=92 Identities=18% Similarity=0.131 Sum_probs=61.3
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+ |.+. .|-..+.-- .. .+.+..|
T Consensus 86 ~~~kPvIAav~G~a~GgG~~lala~--D~~ia~~~a~f~~--pe~~--~Gl~p~~g~----~~--------~l~~~~G-- 145 (251)
T PLN02600 86 ALSIPTIAVVEGAALGGGLELALSC--DLRICGEEAVFGL--PETG--LAIIPGAGG----TQ--------RLPRLVG-- 145 (251)
T ss_pred hCCCCEEEEecCeecchhHHHHHhC--CEEEeeCCCEEeC--cccc--cCcCCCchH----HH--------HHHHHhC--
Confidence 4688999999999999999999999 5899999998877 4421 121111000 00 0111111
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++++||+++||||+|..+.
T Consensus 146 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 177 (251)
T PLN02600 146 RSRAKELIFTGRRIGAREAASMGLVNYCVPAG 177 (251)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCCcEeeChh
Confidence 22234444455679999999999999998754
No 88
>PRK08788 enoyl-CoA hydratase; Validated
Probab=97.36 E-value=0.001 Score=55.37 Aligned_cols=91 Identities=16% Similarity=0.080 Sum_probs=62.4
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPK 83 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~~ 83 (148)
++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+ |.+. .|-..+.- ....+.+..| .
T Consensus 120 ~pkPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~--pev~--lGl~p~~g------------~~~~l~~~vG--~ 179 (287)
T PRK08788 120 AGAISIALVQGDALGGGFEAALSH--HTIIAERGAKMGF--PEIL--FNLFPGMG------------AYSFLARRVG--P 179 (287)
T ss_pred CCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEeeC--chhh--hCcCCCch------------HHHHHHHHhh--H
Confidence 578899999999999999999999 5799999987665 4421 12111110 0111222333 2
Q ss_pred HHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 84 EEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 84 e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
....+++-....|+++||+++||||+|..+.
T Consensus 180 ~~A~ellltG~~l~A~eA~~~GLV~~vv~~~ 210 (287)
T PRK08788 180 KLAEELILSGKLYTAEELHDMGLVDVLVEDG 210 (287)
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence 3345556566679999999999999998754
No 89
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=97.33 E-value=0.00052 Score=55.78 Aligned_cols=87 Identities=18% Similarity=0.140 Sum_probs=62.2
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.++++|-+.....|..- |...-+ .+..
T Consensus 96 ~~~~pvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~L------------------~~~v- 154 (260)
T PRK07659 96 TMPKLTISAIHGPAAGLGLSIALTA--DYVIADISAKLAMNFIGIGLIPDGGGHFFL------------------QKRV- 154 (260)
T ss_pred hCCCCEEEEecCceecHHHHHHHhC--CEEEEcCCCEEcCchhhcCCCCCCchhhhH------------------HHhc-
Confidence 4688999999999999999999999 5899999998876544333211 211111 1122
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeee
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKII 111 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii 111 (148)
......+++-....|+++||+++||||+|.
T Consensus 155 -g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07659 155 -GENKAKQIIWEGKKLSATEALDLGLIDEVI 184 (260)
T ss_pred -CHHHHHHHHHhCCccCHHHHHHcCChHHHh
Confidence 233445556566789999999999999998
No 90
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=97.32 E-value=0.00047 Score=55.86 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=63.1
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+.....|..-+-.. ...+.+..|
T Consensus 100 ~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~----------------~~~l~~~~g-- 159 (262)
T PRK07509 100 RLPVPVIAALEGVCFGGGLQIALGA--DIRIAAPDTKLSIMEAKWGLVPDMAG----------------TVSLRGLVR-- 159 (262)
T ss_pred hCCCCEEEEECCeeecchHHHHHhC--CEEEecCCCEeecchhccCCCCCchH----------------HHHHHHHhC--
Confidence 4688999999999999999999999 57999999988875444332111000 001111112
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecC
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 113 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~ 113 (148)
.....+++-....++++||+++||||+|.++
T Consensus 160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 190 (262)
T PRK07509 160 KDVARELTYTARVFSAEEALELGLVTHVSDD 190 (262)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCChhhhhch
Confidence 2334455556667999999999999999854
No 91
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=97.28 E-value=0.0011 Score=54.46 Aligned_cols=90 Identities=18% Similarity=0.126 Sum_probs=61.2
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS---SGPVTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~---~G~~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
.++.||...+-|.|.+.|.-|.+++ +.|++.++++|.+-...+|.. .|... .+.+..
T Consensus 107 ~~~kPvIaav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~~g~~~------------------~l~~~v 166 (276)
T PRK05864 107 RLHQPVIAAVNGPAIGGGLCLALAA--DIRVASSSAYFRAAGINNGLTASELGLSY------------------LLPRAI 166 (276)
T ss_pred hCCCCEEEEECCEeehhHHHHHHhC--CEEEeeCCCEecCcccccCCCCCCcchhe------------------ehHhhh
Confidence 4689999999999999999999999 589999999887633332211 12110 111222
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
| .....+++-....++++||+++||||+|..+.
T Consensus 167 G--~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 199 (276)
T PRK05864 167 G--SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDE 199 (276)
T ss_pred C--HHHHHHHHHcCCccCHHHHHHcCCcceeeCHH
Confidence 3 22334444344458999999999999998754
No 92
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=97.24 E-value=0.0012 Score=54.81 Aligned_cols=89 Identities=11% Similarity=0.043 Sum_probs=63.3
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.+++.|-+ |.+ ...|-+... . +....|
T Consensus 125 ~~~kPvIAaV~G~a~GgG~~lalac--D~~ias~~a~f~~--pe~-~~gg~~~~~-----~-----------~~~~vG-- 181 (302)
T PRK08272 125 HAHKPTVAKVHGYCVAGGTDIALHC--DQVIAADDAKIGY--PPT-RVWGVPATG-----M-----------WAYRLG-- 181 (302)
T ss_pred hCCCCEEEEEccEeehhhHHHHHhC--CEEEEeCCCEecC--cch-hcccCChHH-----H-----------HHHHhh--
Confidence 4689999999999999999999999 5799999997755 542 122322110 0 111223
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....|+++||+++||||+|..+.
T Consensus 182 ~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~ 213 (302)
T PRK08272 182 PQRAKRLLFTGDCITGAQAAEWGLAVEAVPPE 213 (302)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCceecCHH
Confidence 34445566667789999999999999998643
No 93
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=97.20 E-value=0.0015 Score=53.05 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=62.3
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+ |.+. .|-....- .. .+.+..|
T Consensus 87 ~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~--pe~~--~Gl~p~~~--~~-----------~l~~~vg-- 145 (251)
T TIGR03189 87 DSPVPILVAVRGQCLGGGLEVAAAG--NLMFAAPDAKLGQ--PEIV--LGVFAPAA--SC-----------LLPERMG-- 145 (251)
T ss_pred hCCCCEEEEecCeeeeHHHHHHHhC--CEEEEcCCCEEeC--chhh--cCCCCCch--HH-----------HHHHHhC--
Confidence 4689999999999999999999999 5799999998777 4421 12111110 00 1222233
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecC
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 113 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~ 113 (148)
.....+++-...-++++||+++||||+|.++
T Consensus 146 ~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~ 176 (251)
T TIGR03189 146 RVAAEDLLYSGRSIDGAEGARIGLANAVAED 176 (251)
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCcceecCc
Confidence 2334555555557999999999999999864
No 94
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=97.20 E-value=0.001 Score=53.92 Aligned_cols=91 Identities=11% Similarity=0.044 Sum_probs=62.2
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|..|.+++ +.|++.++++|-+.....|. ....- .. .+.+..|
T Consensus 94 ~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl----~p~~~--~~-----------~l~~~vg-- 152 (255)
T PRK07112 94 TGPYVTIAHVRGKVNAGGIGFVAAS--DIVIADETAPFSLSELLFGL----IPACV--LP-----------FLIRRIG-- 152 (255)
T ss_pred cCCCCEEEEEecEEEcchhHHHHcC--CEEEEcCCCEEeCchhhhcc----Ccchh--hH-----------HHHHHhC--
Confidence 4688999999999999999999999 58999999988774433221 11110 00 1122222
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.....+++-...-++++||+++||||+|..+.
T Consensus 153 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 184 (255)
T PRK07112 153 TQKAHYMTLMTQPVTAQQAFSWGLVDAYGANS 184 (255)
T ss_pred HHHHHHHHHhCCcccHHHHHHcCCCceecCcH
Confidence 22333445455579999999999999998753
No 95
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=97.20 E-value=0.0015 Score=53.29 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=61.7
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.++++|.+ |.+ ..|-..+.-- .. +.+..|
T Consensus 99 ~~~kPvIaaV~G~a~GgG~~lal~~--D~~ia~~~a~f~~--pe~--~~Gi~p~~~~--~~-----------l~~~vG-- 157 (265)
T PRK05674 99 RLKIPTLAVVQGAAFGGALGLISCC--DMAIGADDAQFCL--SEV--RIGLAPAVIS--PF-----------VVKAIG-- 157 (265)
T ss_pred cCCCCEEEEEcCEEEechhhHhhhc--CEEEEeCCCEEeC--ccc--ccCCCcchhH--HH-----------HHHHhC--
Confidence 4689999999999999999999999 5799999998887 552 1232222210 01 111122
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecC
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 113 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~ 113 (148)
...-.+++-...-|+++||+++||||+|..+
T Consensus 158 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 188 (265)
T PRK05674 158 ERAARRYALTAERFDGRRARELGLLAESYPA 188 (265)
T ss_pred HHHHHHHHHhCcccCHHHHHHCCCcceecCH
Confidence 1233344444556899999999999999875
No 96
>PRK08321 naphthoate synthase; Validated
Probab=97.16 E-value=0.0032 Score=52.46 Aligned_cols=92 Identities=20% Similarity=0.129 Sum_probs=61.7
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeec-ccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQ-PNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~-pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++. ++++|.+=...+|..-+...- ..+.+..|
T Consensus 133 ~~pkP~IAaV~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~~Gl~p~~~~~----------------~~L~r~vG- 193 (302)
T PRK08321 133 FMPKVVIAVVPGWAAGGGHSLHVVC--DLTLASREHARFKQTDADVGSFDGGYGS----------------AYLARQVG- 193 (302)
T ss_pred cCCCCEEEEEcCeeehHHHHHHHhC--CEEEEecCCCEEECCccccccCCCchHH----------------HHHHHHhC-
Confidence 4688999999999999999999999 579998 689887633322211111000 01122222
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
...-.+++-....++|+||+++||||+|.++.
T Consensus 194 -~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~ 225 (302)
T PRK08321 194 -QKFAREIFFLGRTYSAEEAHDMGAVNAVVPHA 225 (302)
T ss_pred -HHHHHHHHHcCCccCHHHHHHCCCceEeeCHH
Confidence 22334455556689999999999999998754
No 97
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.13 E-value=0.0017 Score=58.73 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=70.6
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeeccc--CeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN--SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pn--a~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||...+-|.|.+.|..|.+++ +.|++.++ ++|-+ |.+. ..|-..+.-- ...| .....
T Consensus 121 ~~pkPvIAAVnG~a~GGG~~LALac--D~rIas~~~~a~fg~--pEv~-~~Gl~P~~gg-~~rl-----------~~~~~ 183 (550)
T PRK08184 121 HSGLKFIAAVNGTCAGGGYELALAC--DEIVLVDDRSSAVSL--PEVP-LLGVLPGTGG-LTRV-----------TDKRK 183 (550)
T ss_pred hCCCCEEEEECCEeehHHHHHHHhC--CEEEEecCCCcEEEc--cchh-ccccCCCcch-HHHh-----------hhhhh
Confidence 4688999999999999999999999 57999887 55544 4321 0121111000 0001 11111
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCchhhhchhhHHHHHHHHHHhhhhcCCCCCCCC
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRDYDMMLAQQMSMEREAGGPQAAPS 145 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (148)
.......+++-....|+++||+++||||+|..+. +..+ + ..+.+++=.+..|+.+|.
T Consensus 184 vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d-~l~~-----~--a~~~A~~ia~~~~~~~~~ 240 (550)
T PRK08184 184 VRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPS-KFDA-----K--VAERAAELAAASDRPADA 240 (550)
T ss_pred cCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHH-HHHH-----H--HHHHHHHHHhCCCCCCCC
Confidence 2233334444455589999999999999998643 2211 1 123344455677777774
No 98
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=97.12 E-value=0.0016 Score=52.62 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=57.1
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+..+..|..-+-.... .+ .+..|.
T Consensus 86 ~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~~~~~~Gl~p~~g~~~-----~l-----------~~~~g~ 147 (248)
T PRK06072 86 RFSDKIYISAINGVTAGACIGIALST--DFKFASRDVKFVTAFQRLGLASDTGVAY-----FL-----------LKLTGQ 147 (248)
T ss_pred HhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEecchhhcCcCCCchHHH-----HH-----------HHHhhH
Confidence 34688999999999999999999999 5899999999876444433221111000 01 111121
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceee
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKI 110 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~I 110 (148)
...+++-....++++||+++||||++
T Consensus 148 ---~a~~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 148 ---RFYEILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred ---HHHHHHHhCCccCHHHHHHCCCcccc
Confidence 11223333345899999999999975
No 99
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=97.12 E-value=0.0019 Score=52.13 Aligned_cols=90 Identities=22% Similarity=0.273 Sum_probs=61.4
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||...+-|.|.+.|.-|.+++ +.|++.++++|.+ |.+. .|-..+.- ....+.+..|
T Consensus 84 ~~~kP~Iaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~--pe~~--~G~~p~~g------------~~~~l~~~~G-- 143 (243)
T PRK07854 84 AAPVPVIAAINGPAIGAGLQLAMAC--DLRVVAPEAYFQF--PVAK--YGIALDNW------------TIRRLSSLVG-- 143 (243)
T ss_pred hCCCCEEEEecCcccccHHHHHHhC--CEEEEcCCCEEec--cccc--cccCCCcc------------HHHHHHHHhC--
Confidence 4688999999999999999999999 5799999998775 5421 22111100 0011222223
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeec
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIID 112 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~ 112 (148)
...-.+++-....++++||+++||||+|.+
T Consensus 144 ~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~ 173 (243)
T PRK07854 144 GGRARAMLLGAEKLTAEQALATGMANRIGT 173 (243)
T ss_pred HHHHHHHHHcCCCcCHHHHHHCCCcccccC
Confidence 223345555667899999999999999954
No 100
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=97.07 E-value=0.00098 Score=53.80 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=61.2
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||...+-|.|.+.|..|.+++ +.|++.++++|.+.....|..- |...- +.+..|
T Consensus 93 ~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G~~p~~g~~~~------------------l~~~~G 152 (249)
T PRK05870 93 SCPLPTIAAVNGAAVGAGLNLALAA--DVRIAGPKALFDARFQKLGLHPGGGATWM------------------LQRAVG 152 (249)
T ss_pred hCCCCEEEEECCEeEchhHHHHHhC--CEEEEcCCCEEeCcccccCcCCCCcceee------------------HHhhhC
Confidence 4688999999999999999999999 5899999999876544333211 11100 111122
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeee
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKII 111 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii 111 (148)
.....+++-....++++||+++||||+|.
T Consensus 153 --~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 153 --PQVARAALLFGMRFDAEAAVRHGLALMVA 181 (249)
T ss_pred --HHHHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence 23334445455679999999999999997
No 101
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=97.01 E-value=0.0036 Score=50.45 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=60.3
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecc-cCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP-NSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~p-na~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
.++.||...+-|.|.+.|..|++++ +.|++.+ .++|.+-....|.. ....- ...+..+.|.
T Consensus 92 ~~~kPvIAaV~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~~Gl~---~p~~~-------------~~~l~~~vG~ 153 (239)
T PLN02267 92 SLPMPTIAAVTGHASAAGFILALSH--DYVLMRKDRGVLYMSEVDIGLP---LPDYF-------------MALLRAKIGS 153 (239)
T ss_pred cCCCCEEEEECCcchHHHHHHHHHC--CEEEecCCCCeEeccccccCCC---CChHH-------------HHHHHHHcCh
Confidence 4688999999999999999999999 5799975 45665533222211 01110 0112223332
Q ss_pred CHHHH-HHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 82 PKEEI-AKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 82 ~~e~i-~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
+ .- .+++-....|+++||+++||||+|..+.
T Consensus 154 ~--~a~~~llltG~~~~a~eA~~~Glv~~vv~~~ 185 (239)
T PLN02267 154 P--AARRDVLLRAAKLTAEEAVEMGIVDSAHDSA 185 (239)
T ss_pred H--HHHHHHHHcCCcCCHHHHHHCCCcceecCCH
Confidence 2 22 2455566779999999999999998754
No 102
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=96.89 E-value=0.0078 Score=54.69 Aligned_cols=106 Identities=15% Similarity=0.039 Sum_probs=74.1
Q ss_pred cCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCC----------------------------CC-C-C-C
Q 032040 5 KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG----------------------------RS-S-G-P 53 (148)
Q Consensus 5 ~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~----------------------------~~-~-G-~ 53 (148)
..||.++..+. +|.+=+|.+++ ++-|+.|.+.+.++-.... .+ . . +
T Consensus 126 gKpVvA~~~~~-~s~~YylAs~A--D~I~~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS 202 (584)
T TIGR00705 126 GKPVYAYGTNY-SQGQYYLASFA--DEIILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMS 202 (584)
T ss_pred CCeEEEEEccc-cchhhhhhhhC--CEEEECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCC
Confidence 57899987765 46666666656 4679999998876533210 00 0 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCc-------ccHHHHHHcCCceeeecC
Q 032040 54 VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKY-------MQAKEAIVYGLADKIIDS 113 (148)
Q Consensus 54 ~~dl~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m~rd~~-------lta~EA~eyGlID~Ii~~ 113 (148)
..+-+..-..|+.+.+.+.+..++.-+++.+++....+.-.| .++++|++.||||+|...
T Consensus 203 ~e~re~~~~~l~~l~~~f~~~Va~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~ 269 (584)
T TIGR00705 203 PEARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSY 269 (584)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCH
Confidence 223333445667778888888888889999999888776555 389999999999999653
No 103
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=96.88 E-value=0.0094 Score=49.78 Aligned_cols=97 Identities=21% Similarity=0.215 Sum_probs=62.7
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHH----------------H----HHHH
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMW----------------R----KAKD 63 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~----------------~----~a~~ 63 (148)
.+.+|++++-..|.|+||+|.++++ +-+|.|+|.+-==.|.++.. ++..+. + .-+.
T Consensus 117 ~~~~v~v~VP~~A~SAGTlIALaAD--eIvM~p~a~LGpiDPqi~~~--pA~sil~~~~~K~~~~i~D~tlIladia~KA 192 (285)
T PF01972_consen 117 HPAKVTVIVPHYAMSAGTLIALAAD--EIVMGPGAVLGPIDPQIGQY--PAASILKAVEQKPPDEIDDQTLILADIAEKA 192 (285)
T ss_pred CCCCEEEEECcccccHHHHHHHhCC--eEEECCCCccCCCCccccCC--ChHHHHHHHHhccccccCHHHHHHHHHHHHH
Confidence 3678999999999999999999995 56999999887555554321 111111 0 1123
Q ss_pred HHHHHHHHHHHHHhhcCCCHH---HHHHhhc-----CCCcccHHHHHHcCC
Q 032040 64 LEANAESYIELLAKGTGKPKE---EIAKDIQ-----RPKYMQAKEAIVYGL 106 (148)
Q Consensus 64 l~~~~~~l~~iya~~Tg~~~e---~i~~~m~-----rd~~lta~EA~eyGl 106 (148)
+.++++.+.+++..+. +.+ +|.+.+. .|+-+|++||++.||
T Consensus 193 i~q~~~~v~~lL~~~~--~~eka~~ia~~L~~g~~tHdypi~~eea~~lGL 241 (285)
T PF01972_consen 193 IRQVREFVKELLKDKM--DEEKAEEIAEKLSSGKWTHDYPITVEEAKELGL 241 (285)
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCCCCCCCHHHHHHcCC
Confidence 3444455555565443 444 3444443 366699999999996
No 104
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.87 E-value=0.003 Score=54.45 Aligned_cols=90 Identities=16% Similarity=0.065 Sum_probs=60.7
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~--~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+-.+..|.. .|...-+.. ..|
T Consensus 122 ~~pKPVIAAVnG~AiGGGleLALaC--DlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLpr------------------lvG 181 (360)
T TIGR03200 122 GCDKPVICRVNGMRIGGGQEIGMAA--DFTIAQDLANFGQAGPKHGSAPIGGATDFLPL------------------MIG 181 (360)
T ss_pred hCCCCEEEEECCEeeeHHHHHHHhC--CEEEEcCCCEEeCchhccCCCCCccHHHHHHH------------------hhC
Confidence 4688999999999999999999999 579999999887744443321 121111111 111
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
. ..-..++--...++|+||+++||||+|....
T Consensus 182 ~--~rA~~llltGe~~sA~EA~~~GLVd~VVp~~ 213 (360)
T TIGR03200 182 C--EQAMVSGTLCEPWSAHKAKRLGIIMDVVPAL 213 (360)
T ss_pred H--HHHHHHHHhCCcCcHHHHHHcCChheecCch
Confidence 1 1122222234489999999999999998753
No 105
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=96.80 E-value=0.0038 Score=54.77 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=56.5
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
..+.|+.++++|-+.|.|++.+++|+ ..+|.|||.+.+=.|. + -+.=|.... . +
T Consensus 257 ~l~VPiISVViGeGgSGGAlalg~aD--~VlMle~A~ysVisPE-g----aAsILwkd~---~---------------~- 310 (431)
T PLN03230 257 GLRVPIIATVIGEGGSGGALAIGCGN--RMLMMENAVYYVASPE-A----CAAILWKSA---A---------------A- 310 (431)
T ss_pred cCCCCEEEEEeCCCCcHHHHHhhcCC--EEEEecCCEEEecCHH-H----HHHHHhccc---c---------------c-
Confidence 35689999999999999999998884 6789999988776664 1 111111100 0 0
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.++-.+ ..-+||.++++.|+||+||...
T Consensus 311 A~eAAe----alkitA~dL~~~GiID~II~Ep 338 (431)
T PLN03230 311 APKAAE----ALRITAAELVKLGVVDEIVPEP 338 (431)
T ss_pred hHHHHH----HcCCCHHHHHhCCCCeEeccCC
Confidence 111111 2378999999999999999854
No 106
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=96.77 E-value=0.0044 Score=51.07 Aligned_cols=81 Identities=22% Similarity=0.316 Sum_probs=57.2
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPK 83 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~~ 83 (148)
.+.|+.++++|-+.|.|++.++.+ +..+|.|++.+.+=.|. + -+.=+.. . ....
T Consensus 135 ~~VP~IsVI~G~~~gGgA~a~~~~--D~v~m~~~a~~~v~~pe-~----~a~il~~-----------------~--~~~a 188 (256)
T PRK12319 135 LKVPIIAIIIGEGGSGGALALAVA--DQVWMLENTMYAVLSPE-G----FASILWK-----------------D--GSRA 188 (256)
T ss_pred CCCCEEEEEeCCcCcHHHHHhhcC--CEEEEecCceEEEcCHH-H----HHHHHhc-----------------C--cccH
Confidence 468999999999999999988777 56899999988886665 2 1111110 0 0122
Q ss_pred HHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 84 EEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 84 e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
++..+.+ -+||.++.+.|+||+|+++.
T Consensus 189 ~~aa~~~----~~~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 189 TEAAELM----KITAGELLEMGVVDKVIPEH 215 (256)
T ss_pred HHHHHHc----CCCHHHHHHCCCCcEecCCC
Confidence 2333333 45999999999999999875
No 107
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=96.69 E-value=0.0031 Score=51.15 Aligned_cols=87 Identities=18% Similarity=0.060 Sum_probs=56.6
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|++++ +.|++.++++|-+=....|..- |...- +. ++..
T Consensus 99 ~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~-------l~----~l~~------- 158 (260)
T PRK07827 99 ELPKPVIAAIDGHVRAGGFGLVGAC--DIVVAGPESTFALTEARIGVAPAIISLTL-------LP----RLSP------- 158 (260)
T ss_pred hCCCCEEEEEcCeeecchhhHHHhC--CEEEEcCCCEEeCcccccCCCCCcccchh-------HH----hhhH-------
Confidence 4688999999999999999999999 5899999998766222222111 11111 11 0100
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeec
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 112 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~ 112 (148)
....+++-....++++||+++||||+|.+
T Consensus 159 ---~~a~~l~l~g~~~~a~eA~~~Glv~~v~~ 187 (260)
T PRK07827 159 ---RAAARYYLTGEKFGAAEAARIGLVTAAAD 187 (260)
T ss_pred ---HHHHHHHHhCCccCHHHHHHcCCcccchH
Confidence 01122233344589999999999999964
No 108
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.63 E-value=0.011 Score=54.80 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=63.5
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+=....|..- |...-+ .+..
T Consensus 99 ~~~~kPvIAav~G~a~GgG~~LAlac--D~ria~~~a~f~~pe~~lGl~p~~g~~~~L------------------~rlv 158 (715)
T PRK11730 99 EDLPVPTVAAINGYALGGGCECVLAT--DYRVASPDARIGLPETKLGIMPGFGGTVRL------------------PRLI 158 (715)
T ss_pred HcCCCCEEEEECCEeehHHHHHHHhC--CEEEEcCCCEEeCchhhcCCCCCchHHHHH------------------HHhc
Confidence 34689999999999999999999999 5899999998877333322111 111111 1112
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCch
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 115 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~ 115 (148)
| ...-.+++-....++|+||+++||||+|..+..
T Consensus 159 G--~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~ 192 (715)
T PRK11730 159 G--ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEK 192 (715)
T ss_pred C--HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHH
Confidence 2 223345555566799999999999999987543
No 109
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=96.60 E-value=0.0045 Score=55.95 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=57.6
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeeccc--CeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN--SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pn--a~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++ ++|-+ |.+. ..|-....-- ...+- . ....
T Consensus 117 ~~pkPvIAAVnG~a~GGG~~LALac--D~rvAs~~a~a~f~~--pEv~-~lGl~P~~gg-~~~l~--~-------~~~v- 180 (546)
T TIGR03222 117 HSGLKFLAAVNGTCAGGGYELALAC--DEIMLVDDRSSSVSL--PEVP-LLGVLPGTGG-LTRVT--D-------KRRV- 180 (546)
T ss_pred hCCCCEEEEECCEeehHHHHHHHhC--CEEEEecCCCcEEEc--cchh-ccCcCCccch-hhhcc--c-------cchh-
Confidence 4688999999999999999999999 58999886 45444 5421 0121111100 00010 0 0111
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
....-.+++-...-|+++||+++||||+|..+.
T Consensus 181 -g~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~ 213 (546)
T TIGR03222 181 -RRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPS 213 (546)
T ss_pred -CHHHHHHHHHcCCCccHHHHHHcCCceEEeChH
Confidence 122223333344468999999999999998643
No 110
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=96.53 E-value=0.0066 Score=51.58 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=57.4
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
..+.|+.++++|-+.|.|++.+..+ +..+|.|+|.+.+=.|. + -+.=+... . ..
T Consensus 187 ~~~VP~IsVIiGeg~sGGAla~~~a--D~v~m~~~A~~svisPE-g----~a~Il~~~------------------~-~~ 240 (319)
T PRK05724 187 RLKVPIICTVIGEGGSGGALAIGVG--DRVLMLEYSTYSVISPE-G----CASILWKD------------------A-SK 240 (319)
T ss_pred CCCCCEEEEEeCCccHHHHHHHhcc--CeeeeecCceEeecCHH-H----HHHHHhcC------------------c-hh
Confidence 3578999999999999999888777 46789999988886665 2 12111110 0 11
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.++..+ ..-+||.++++.|+||+|+...
T Consensus 241 a~~aae----~~~ita~~l~~~g~iD~II~Ep 268 (319)
T PRK05724 241 APEAAE----AMKITAQDLKELGIIDEIIPEP 268 (319)
T ss_pred HHHHHH----HcCCCHHHHHHCCCceEeccCC
Confidence 222322 3448999999999999999854
No 111
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.51 E-value=0.0057 Score=51.87 Aligned_cols=81 Identities=21% Similarity=0.254 Sum_probs=56.1
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPK 83 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~~ 83 (148)
.+.|+.++++|-+.|.|++.+..+ +..+|.|||.+.+=.|. + -+.=+.... . ..
T Consensus 188 ~~VP~IsVViGeggsGGAla~~~a--D~v~m~~~a~~sVisPE-g----~a~Il~kd~---------------~----~a 241 (316)
T TIGR00513 188 LGVPVICTVIGEGGSGGALAIGVG--DKVNMLEYSTYSVISPE-G----CAAILWKDA---------------S----KA 241 (316)
T ss_pred CCCCEEEEEecccccHHHhhhccC--CEEEEecCceEEecCHH-H----HHHHhccch---------------h----hH
Confidence 478999999999999999877766 56899999998887775 2 121111100 0 01
Q ss_pred HHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 84 EEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 84 e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
++..+ -.-+||.++.+.|+||+|+...
T Consensus 242 ~~aae----~~~~ta~~l~~~G~iD~II~ep 268 (316)
T TIGR00513 242 PKAAE----AMKITAPDLKELGLIDSIIPEP 268 (316)
T ss_pred HHHHH----HccCCHHHHHHCCCCeEeccCC
Confidence 12222 1445899999999999999865
No 112
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=96.35 E-value=0.012 Score=50.78 Aligned_cols=91 Identities=20% Similarity=0.114 Sum_probs=59.7
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+=...+|.. .+.--. -.|-++ ....+
T Consensus 103 ~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~iGl~----p~~g~~-~~L~rl----~g~~a------ 165 (379)
T PLN02874 103 TYKKTQVALVHGLVMGGGAGLMVPM--KFRVVTEKTVFATPEASVGFH----TDCGFS-YILSRL----PGHLG------ 165 (379)
T ss_pred hCCCCEEEEecCeEEecHHHHHHhC--CeEEEeCCeEEeccccccCcC----CChhHH-HHHHhh----hHHHH------
Confidence 4689999999999999999999999 589999999877733332221 111100 001111 11001
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
..++-....++++||+++||||+|+.+.
T Consensus 166 ----~~l~ltG~~i~a~eA~~~GLv~~vv~~~ 193 (379)
T PLN02874 166 ----EYLALTGARLNGKEMVACGLATHFVPSE 193 (379)
T ss_pred ----HHHHHcCCcccHHHHHHcCCccEEeCHH
Confidence 1233344569999999999999998753
No 113
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=96.32 E-value=0.019 Score=51.96 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=62.6
Q ss_pred cccCceEEEe-hhhhHHHH-HHHHhcCCCCceee-------cccCeeeeecCCCCCC--CCCHHHHHHHHHHHHHHHHHH
Q 032040 3 YCKSKVYTVN-CGMAYGQA-AMLLSVGAKGYRGL-------QPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESY 71 (148)
Q Consensus 3 ~i~~~V~T~~-~G~AaS~A-slIl~aG~~~~R~a-------~pna~iMIH~p~~~~~--~G~~~dl~~~a~~l~~~~~~l 71 (148)
.++.||...+ -|.|.+.| .=|.+++ +-|++ .++++|.+-....|.. .|...-
T Consensus 363 ~~~kpviAav~~G~a~GgG~~eLalac--D~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~--------------- 425 (546)
T TIGR03222 363 VSSRSLFALIEPGSCFAGTLAELAFAA--DRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSR--------------- 425 (546)
T ss_pred cCCCCEEEEECCCeEeHHHHHHHHHhC--ceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHH---------------
Confidence 4688999999 79999999 8888888 57999 8999987755443322 122211
Q ss_pred HHHHHhhc-CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 72 IELLAKGT-GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 72 ~~iya~~T-g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
+.+.. |.+...-.+++-....|+++||+++|||++|.++.
T Consensus 426 ---L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~ 466 (546)
T TIGR03222 426 ---LATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDI 466 (546)
T ss_pred ---HHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCch
Confidence 12222 33333222233345679999999999999997764
No 114
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.31 E-value=0.012 Score=54.41 Aligned_cols=93 Identities=20% Similarity=0.170 Sum_probs=62.6
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccC--eeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS--STKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 79 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna--~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~T 79 (148)
..++.||...+-|.|.+.|.-|.+++ +.|++.+++ +|-+....+|..-|--. ...+.+..
T Consensus 98 ~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~a~fg~pe~~lGl~p~~gg----------------~~~L~r~v 159 (708)
T PRK11154 98 EALPIPVVAAIHGACLGGGLELALAC--HYRVCTDDPKTVLGLPEVQLGLLPGSGG----------------TQRLPRLI 159 (708)
T ss_pred HhCCCCEEEEECCeeechHHHHHHhC--CEEEEeCCCCceEeCccccCCCCCCccH----------------HhHHHhhc
Confidence 35788999999999999999999999 589999986 45543333232111100 01111122
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 80 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 80 g~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
| ...-.+++-....++++||+++||||+|..+.
T Consensus 160 G--~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~ 192 (708)
T PRK11154 160 G--VSTALDMILTGKQLRAKQALKLGLVDDVVPHS 192 (708)
T ss_pred C--HHHHHHHHHhCCcCCHHHHHHCCCCcEecChH
Confidence 3 23334556666779999999999999998754
No 115
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=96.28 E-value=0.0045 Score=52.60 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=60.2
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~--~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+=....|.. .|...-+. +..|
T Consensus 98 ~~~kPvIAaVnG~a~GgG~~Lalac--D~ria~~~a~f~~pe~~lGl~P~~g~~~~L~------------------r~~g 157 (342)
T PRK05617 98 RYPKPYIALMDGIVMGGGVGISAHG--SHRIVTERTKMAMPETGIGFFPDVGGTYFLS------------------RAPG 157 (342)
T ss_pred hCCCCEEEEEcCEEEccHhHHhhhC--CEEEEcCCCEeeCCccccCcCCCccceeEeh------------------hccc
Confidence 4688999999999999999999999 589999999887743332321 12111111 0011
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
..-.+++-....++++||+++||||+|..+.
T Consensus 158 ---~~a~~llltG~~i~A~eA~~~GLv~~vv~~~ 188 (342)
T PRK05617 158 ---ALGTYLALTGARISAADALYAGLADHFVPSA 188 (342)
T ss_pred ---HHHHHHHHcCCCCCHHHHHHcCCcceecCHH
Confidence 0112333344569999999999999998753
No 116
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=96.24 E-value=0.016 Score=53.63 Aligned_cols=91 Identities=24% Similarity=0.231 Sum_probs=61.0
Q ss_pred ccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCC--CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 032040 2 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV--GRS--SGPVTDMWRKAKDLEANAESYIELLAK 77 (148)
Q Consensus 2 ~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~--~~~--~G~~~dl~~~a~~l~~~~~~l~~iya~ 77 (148)
..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++..+..|.+ |.. .|-..-+ .+
T Consensus 93 ~~~~kPvIAaVnG~a~GgG~~LaLac--D~ria~~~~~a~fg~pev~lGl~p~~g~~~~L------------------~r 152 (699)
T TIGR02440 93 EALPIPVVAAIHGACLGGGLELALAC--HSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRL------------------PR 152 (699)
T ss_pred HhCCCCEEEEECCEeecHHHHHHHhC--CEEEEcCCCCcEEechhhcccCCCCccHHHHH------------------HH
Confidence 34689999999999999999999999 589999874333333442 211 1211111 11
Q ss_pred hcCCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 78 GTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 78 ~Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
..| ...-.+++-....++++||+++||||+|..+.
T Consensus 153 ~vG--~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~ 187 (699)
T TIGR02440 153 LIG--VSTALDMILTGKQLRAKQALKLGLVDDVVPQS 187 (699)
T ss_pred hcC--HHHHHHHHHcCCcCCHHHHHhCCCCcEecChh
Confidence 112 22234555566779999999999999998754
No 117
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=96.13 E-value=0.016 Score=49.31 Aligned_cols=82 Identities=13% Similarity=0.196 Sum_probs=56.7
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
..+.|+.++++|-+.|.|++.++.+ +..+|.++|.+.+=.|. + -++=+....+.
T Consensus 190 ~~~VP~IsVViGeggsGGAlal~~a--D~V~m~e~a~~sVisPE-g----~a~Il~~d~~~------------------- 243 (322)
T CHL00198 190 SFEVPIICTIIGEGGSGGALGIGIG--DSIMMLEYAVYTVATPE-A----CAAILWKDSKK------------------- 243 (322)
T ss_pred cCCCCEEEEEeCcccHHHHHhhhcC--CeEEEeCCeEEEecCHH-H----HHHHHhcchhh-------------------
Confidence 4578999999999999999877777 57899999999887775 2 12211110000
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
..+ ..+-.-+||++-++.|+||+|+...
T Consensus 244 a~~----aA~~~~ita~dL~~~giiD~ii~Ep 271 (322)
T CHL00198 244 SLD----AAEALKITSEDLKVLGIIDEIIPEP 271 (322)
T ss_pred HHH----HHHHcCCCHHHHHhCCCCeEeccCC
Confidence 001 1222347888889999999999854
No 118
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=96.10 E-value=0.022 Score=49.32 Aligned_cols=89 Identities=16% Similarity=0.099 Sum_probs=59.2
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~--~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+.|.|.+.|.-|.+++ +.|++.++++|-+=...+|.+ .|..-- |-++-.. ..
T Consensus 103 ~~pKPvIa~v~G~a~GGG~~Lal~~--D~rvate~a~f~mPE~~iGl~Pd~G~s~~-------L~rl~G~-~~------- 165 (381)
T PLN02988 103 TYSKAQVSILNGIVMGGGAGVSVHG--RFRIATENTVFAMPETALGLFPDVGASYF-------LSRLPGF-FG------- 165 (381)
T ss_pred HCCCCEEEEecCeEeehhhHHhhcC--CeEEEcCCcEEeChhhhcCcCCCccHHHH-------HHHHHHH-HH-------
Confidence 4688999999999999999999999 589999999876522222211 121111 1111111 01
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
..++--...+++.||++.||+|+++...
T Consensus 166 ------~~l~LTG~~i~a~eA~~~GLv~~vv~~~ 193 (381)
T PLN02988 166 ------EYVGLTGARLDGAEMLACGLATHFVPST 193 (381)
T ss_pred ------HHHHHcCCCCCHHHHHHcCCceEecCHh
Confidence 1233334578999999999999998754
No 119
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=95.95 E-value=0.017 Score=50.43 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=60.3
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~--~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||.+.+.|.|.+.|.-|.+++ +.|++.++++|-+=...+|.+ .|..-- |-++ .|
T Consensus 131 ~~pkPvIA~v~G~a~GGG~~Lal~c--D~rvate~a~fa~PE~~iGl~Pd~G~s~~-------L~rl-----------~G 190 (401)
T PLN02157 131 TYLKPHVAILNGVTMGGGTGVSIPG--TFRVATDRTIFATPETIIGFHPDAGASFN-------LSHL-----------PG 190 (401)
T ss_pred hCCCCEEEEEeCeEeehhHHHHHhC--CEEEEeCCCEEEChhhhcCCCCCccHHHH-------HHHh-----------hh
Confidence 4688999999999999999999999 589999999877633332321 121111 1111 11
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
. .-..++-....|+++||+++||||+|+.+.
T Consensus 191 ~---~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~ 221 (401)
T PLN02157 191 R---LGEYLGLTGLKLSGAEMLACGLATHYIRSE 221 (401)
T ss_pred H---HHHHHHHcCCcCCHHHHHHcCCceEEeCHh
Confidence 0 012333345689999999999999998764
No 120
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=95.80 E-value=0.042 Score=51.12 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=61.8
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
.++.||...+-|.|.+.|.-|.+++ +.|++.++++|-+=...+|..- |...-+ .+..|
T Consensus 100 ~~pkPvIAai~G~alGGGleLalac--D~ria~~~a~fglPEv~lGl~Pg~Ggt~rL------------------~rliG 159 (714)
T TIGR02437 100 DLPVPTVAAINGIALGGGCECVLAT--DFRIADDTAKIGLPETKLGIMPGFGGTVRL------------------PRVIG 159 (714)
T ss_pred hCCCCEEEEECCeeecHHHHHHHhC--CEEEEeCCCEEecchhhcCCCCCccHHHHH------------------HHHhC
Confidence 4688999999999999999999999 5899999998877333323211 211111 11112
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
. ..-.+++-....++++||+++||||+|..+.
T Consensus 160 ~--~~A~~llltG~~~~A~eA~~~GLvd~vv~~~ 191 (714)
T TIGR02437 160 A--DNALEWIASGKENRAEDALKVGAVDAVVTAD 191 (714)
T ss_pred H--HHHHHHHHcCCcCCHHHHHHCCCCcEeeChh
Confidence 1 2223445555679999999999999998653
No 121
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=95.75 E-value=0.066 Score=43.69 Aligned_cols=96 Identities=14% Similarity=0.024 Sum_probs=60.7
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPK 83 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~~ 83 (148)
.+.|+.++++|-+.|.|.+-+..+. +..|+.|++.+-.=.|. |-+.=+. ++.
T Consensus 106 ~~vP~IsvI~g~a~ggg~lamg~~a-d~v~Alp~A~i~vm~~e-----~aa~I~~----------------------~~~ 157 (238)
T TIGR03134 106 AGHPVIGLIYGKAISGAFLAHGLQA-DRIIALPGAMVHVMDLE-----SMARVTK----------------------RSV 157 (238)
T ss_pred CCCCEEEEEeCCccHHHHHHHccCc-CeEEEcCCcEEEecCHH-----HHHHHHc----------------------cCH
Confidence 3589999999999998887775433 56899999976654443 1111111 222
Q ss_pred HHHHHhhc--CCCcccHHHHHHcCCceeeecCchhhhchhhHHHHH
Q 032040 84 EEIAKDIQ--RPKYMQAKEAIVYGLADKIIDSQDAAYEKRDYDMML 127 (148)
Q Consensus 84 e~i~~~m~--rd~~lta~EA~eyGlID~Ii~~~~~~~~~~~~~~~~ 127 (148)
+++.+... ..+-.+++.+.+.|+||+|+++........+....+
T Consensus 158 ~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~~~~~~~~~~~~~ 203 (238)
T TIGR03134 158 EELEALAKSSPVFAPGIENFVKLGGVHALLDVADADAPAAQLAAVL 203 (238)
T ss_pred hHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCCcccHHHHHHHHH
Confidence 33333322 235678889999999999999776432224444433
No 122
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=95.36 E-value=0.061 Score=48.74 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=59.1
Q ss_pred cccCceEEEeh-hhhHHHH-HHHHhcCCCCceeec-------ccCeeeeecCCCCCC--CCCHHHHHHHHHHHHHHHHHH
Q 032040 3 YCKSKVYTVNC-GMAYGQA-AMLLSVGAKGYRGLQ-------PNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESY 71 (148)
Q Consensus 3 ~i~~~V~T~~~-G~AaS~A-slIl~aG~~~~R~a~-------pna~iMIH~p~~~~~--~G~~~dl~~~a~~l~~~~~~l 71 (148)
-++.||...+- |.|.+.| .-|.+++ +.|++. ++++|.+-...+|-. .|...-+
T Consensus 367 ~~~kPvIAaV~~G~a~GgG~~eLalac--D~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L-------------- 430 (550)
T PRK08184 367 VTSRSLFALIEPGSCFAGTLAELALAA--DRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRL-------------- 430 (550)
T ss_pred hCCCCEEEEECCCceehhHHHHHHHHC--ChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHh--------------
Confidence 35789999996 9999999 8888888 478999 999887754443322 1222111
Q ss_pred HHHHHhh-cCCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 72 IELLAKG-TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 72 ~~iya~~-Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.++ .|.....-..++-....++++||+++||||+|..+.
T Consensus 431 ----~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~ 470 (550)
T PRK08184 431 ----ARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDI 470 (550)
T ss_pred ----HHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChH
Confidence 111 122211111111244579999999999999998764
No 123
>PRK10949 protease 4; Provisional
Probab=95.27 E-value=0.16 Score=46.76 Aligned_cols=106 Identities=15% Similarity=0.048 Sum_probs=67.0
Q ss_pred cCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCC----------------------------C--CC-C
Q 032040 5 KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGR----------------------------S--SG-P 53 (148)
Q Consensus 5 ~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~----------------------------~--~G-~ 53 (148)
..||..+.... +|.+=+|.+++ ++-|+.|.+.+.++-..... + .. +
T Consensus 145 GKpVvA~~~~~-~s~~YyLASaA--D~I~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS 221 (618)
T PRK10949 145 GKPVYAVGDSY-SQGQYYLASFA--NKIYLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMS 221 (618)
T ss_pred CCeEEEEecCc-cchhhhhhhhC--CEEEECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCC
Confidence 46788763333 34444444445 46799999988876543210 0 01 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhh----cC---CCcccHHHHHHcCCceeeecC
Q 032040 54 VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDI----QR---PKYMQAKEAIVYGLADKIIDS 113 (148)
Q Consensus 54 ~~dl~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m----~r---d~~lta~EA~eyGlID~Ii~~ 113 (148)
..+-+..-..|+.+.+.+.+..++.-+++.+++.... +. ..-.+|++|++.||||+|...
T Consensus 222 ~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~ 288 (618)
T PRK10949 222 PAAREADSRWIGELWQNYLNTVAANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASS 288 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCH
Confidence 1222233355667778888888888899999985433 22 123699999999999999654
No 124
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=95.25 E-value=0.046 Score=47.86 Aligned_cols=91 Identities=14% Similarity=-0.001 Sum_probs=60.5
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
.++.||.+.+.|.|.+.|.-|.+++ +.|++.++++|-+=...+|.+ .++--. -.|-++-... ..
T Consensus 136 ~~pKPvIA~v~G~amGGG~gLal~~--D~rVate~a~famPE~~iGl~----PdvG~s-~~L~rl~g~~-g~-------- 199 (407)
T PLN02851 136 TYLKPNVAIMDGITMGCGAGISIPG--MFRVVTDKTVFAHPEVQMGFH----PDAGAS-YYLSRLPGYL-GE-------- 199 (407)
T ss_pred hCCCCEEEEEcCEEeeHHHHHHHhC--CEEEEeCCceEecchhccCCC----CCccHH-HHHHHhcCHH-HH--------
Confidence 4689999999999999999999999 589999999887743333321 111100 0121111111 11
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.++--...|+++||+++||+|+++...
T Consensus 200 -----~L~LTG~~i~a~eA~~~GLa~~~v~~~ 226 (407)
T PLN02851 200 -----YLALTGQKLNGVEMIACGLATHYCLNA 226 (407)
T ss_pred -----HHHHhCCcCCHHHHHHCCCceeecCHh
Confidence 223344578999999999999998765
No 125
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=95.15 E-value=0.18 Score=47.09 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=60.3
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccC--eeeeecCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS--STKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKG 78 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna--~iMIH~p~~~~~~--G~~~dl~~~a~~l~~~~~~l~~iya~~ 78 (148)
.++.||...+-|.|.+.|.-|.+++ +.|++.+++ +|-+....+|..- |...-+ .+.
T Consensus 106 ~~~kPvIAav~G~a~GgG~eLALac--D~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rL------------------prl 165 (737)
T TIGR02441 106 KSQKPIVAAISGSCLGGGLELALAC--HYRIATKDRKTLLGLPEVMLGLLPGAGGTQRL------------------PKL 165 (737)
T ss_pred hCCCCEEEEECCEeecHHHHHHHhC--CEEEEcCCCCCeEecchhhhCCCCCccHhhhH------------------HHh
Confidence 4688999999999999999999999 589999985 4444322222111 111111 111
Q ss_pred cCCCHHHHHHhhcCCCcccHHHHHHcCCceeeecC
Q 032040 79 TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 113 (148)
Q Consensus 79 Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~ 113 (148)
.| ...-.+++-....++++||++.||||+|.++
T Consensus 166 iG--~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 166 TG--VPAALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred hC--HHHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 22 1222345556678899999999999999875
No 126
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=94.57 E-value=0.063 Score=45.31 Aligned_cols=84 Identities=21% Similarity=0.276 Sum_probs=58.3
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
|-.++.||.++++|-..|-+++-+..|+ +-+|+.||.+.+=.|. | =++=|.+.... ..--++..+
T Consensus 184 m~~LkvPiI~iVIGEGgSGGALAi~vad--~V~mle~s~ySVisPE-G----~AsILWkD~~k--------a~eAAe~mk 248 (317)
T COG0825 184 MARLKVPIISIVIGEGGSGGALAIGVAD--RVLMLENSTYSVISPE-G----CASILWKDASK--------AKEAAEAMK 248 (317)
T ss_pred HhCCCCCEEEEEecCCCchhhHHhhHHH--HHHHHHhceeeecChh-h----hhhhhhcChhh--------hHHHHHHcC
Confidence 4467899999999999999999999995 4589999999998886 3 22222111110 001122222
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
+|++.=+++||||.|+...
T Consensus 249 ---------------ita~dLk~lgiID~II~Ep 267 (317)
T COG0825 249 ---------------ITAHDLKELGIIDGIIPEP 267 (317)
T ss_pred ---------------CCHHHHHhCCCcceeccCC
Confidence 5666678999999999864
No 127
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.21 E-value=0.054 Score=50.60 Aligned_cols=82 Identities=16% Similarity=0.143 Sum_probs=54.6
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
....|+.++++|-++|.|++.++.+ +..+|.|+|.+.+=.|. + -+.=+. ..-. .
T Consensus 278 sl~VP~ISVViGeggSGGAlA~g~a--D~VlMle~A~~sVisPE-g----aAsILw---kd~~----------------~ 331 (762)
T PLN03229 278 GLKVPIVSIVIGEGGSGGALAIGCA--NKLLMLENAVFYVASPE-A----CAAILW---KSAK----------------A 331 (762)
T ss_pred CCCCCEEEEEeCCcchHHHHHhhcC--CEEEEecCCeEEecCHH-H----HHHHHh---cCcc----------------c
Confidence 3568999999999999999988888 46789999887765554 1 111111 1000 0
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
..+ ...-.-+||++=++.|+||+||...
T Consensus 332 A~e----AAe~lkiTa~dL~~lGiiD~IIpEp 359 (762)
T PLN03229 332 APK----AAEKLRITAQELCRLQIADGIIPEP 359 (762)
T ss_pred HHH----HHHHcCCCHHHHHhCCCCeeeccCC
Confidence 111 1122347788889999999999854
No 128
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=93.50 E-value=0.23 Score=40.24 Aligned_cols=92 Identities=10% Similarity=0.036 Sum_probs=60.2
Q ss_pred hhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCHHHHHHhhc
Q 032040 13 CGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEA-NAESYIELLAKGTGKPKEEIAKDIQ 91 (148)
Q Consensus 13 ~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~-~~~~l~~iya~~Tg~~~e~i~~~m~ 91 (148)
..+|+|.-.++|++| ..|+.-+.+.+-+|||..++-.-.....+ +..... ...+ ...|-...|+...-+..+..
T Consensus 140 ~A~CasaCpl~fagG--vrRvve~~ayiGVHq~~~~g~~~r~~~~~--a~Sanq~~tar-~a~ylrEMgigpgLlq~ml~ 214 (245)
T COG3904 140 GAMCASACPLMFAGG--VRRVVEDFAYIGVHQITTTGRRERIVNGK--AKSANQKVTAR-LAAYLREMGIGPGLLQMMLA 214 (245)
T ss_pred hhhhhccchhhhhcc--eeeeecccceeeeeeccccCCccccCcHh--hhhhhhhhHHH-HHHHHHHcCCCHHHHHHHhc
Confidence 478999999999999 57999999999999998432111011111 111111 1111 33477778988876655443
Q ss_pred ----CCCcccHHHHHHcCCcee
Q 032040 92 ----RPKYMQAKEAIVYGLADK 109 (148)
Q Consensus 92 ----rd~~lta~EA~eyGlID~ 109 (148)
+=.+|+.+|-.+|.|+.+
T Consensus 215 tpp~dir~l~~kem~~~~L~t~ 236 (245)
T COG3904 215 TPPSDIRQLGLKEMTAMKLVTS 236 (245)
T ss_pred CChHhhhhhhHHHHhhhccccc
Confidence 347899999999988764
No 129
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=90.80 E-value=0.084 Score=43.51 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=64.4
Q ss_pred cccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 3 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 3 ~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
-++.||.+-+-|.|-++|.=|..|+ +-||+...+.|.|...-+ |=+.|+. .|+++-+.+-+ .+
T Consensus 124 ~CpKPVIaavHg~CiGagvDLiTAc--DIRycsqDAffsvkEVDv----glaADvG----TL~RlpkvVGn-------~s 186 (292)
T KOG1681|consen 124 RCPKPVIAAVHGACIGAGVDLITAC--DIRYCSQDAFFSVKEVDV----GLAADVG----TLNRLPKVVGN-------QS 186 (292)
T ss_pred hCChhHHHHHHhhhccccccceeec--ceeeecccceeeeeeeee----ehhhchh----hHhhhhHHhcc-------hH
Confidence 3678888888888888888888888 479999999999987653 3344442 34443332210 11
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCch
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 115 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~ 115 (148)
-++++---..-|+|.||++.|||-+|..++.
T Consensus 187 --~~~elafTar~f~a~EAl~~GLvSrvf~dk~ 217 (292)
T KOG1681|consen 187 --LARELAFTARKFSADEALDSGLVSRVFPDKE 217 (292)
T ss_pred --HHHHHHhhhhhcchhhhhhcCcchhhcCCHH
Confidence 1233334456689999999999999987654
No 130
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=89.69 E-value=0.26 Score=40.40 Aligned_cols=107 Identities=21% Similarity=0.161 Sum_probs=69.3
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGP--VTDMWRKAKDLEANAESYIELLAKG 78 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~--~~dl~~~a~~l~~~~~~l~~iya~~ 78 (148)
|+.++.||...+-|.|.+-+-+|-+.++- -++..|+.|-=--|.++.+-|- +.-|. +.
T Consensus 112 IR~~PKpViA~V~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~Gs~yla------------------r~ 171 (282)
T COG0447 112 IRTMPKPVIAMVAGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYGSSYLA------------------RI 171 (282)
T ss_pred HHhCCcceEEEEeeEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCcccHHHHH------------------HH
Confidence 46889999999999999988888777754 3788899888888887544332 22221 11
Q ss_pred cCC-CHHHHHHhhcCCCcccHHHHHHcCCceeeecCch-hhhchhhHHHHHHHH
Q 032040 79 TGK-PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD-AAYEKRDYDMMLAQQ 130 (148)
Q Consensus 79 Tg~-~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~-~~~~~~~~~~~~~~~ 130 (148)
.|+ ...+|.-+. .-.+|+||++.|+|+.|..... +...-+=..+||.++
T Consensus 172 VGqKkArEIwfLc---R~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kS 222 (282)
T COG0447 172 VGQKKAREIWFLC---RQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKS 222 (282)
T ss_pred hhhhhhHHhhhhh---hhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcC
Confidence 121 112332222 2358999999999999977532 333333455666554
No 131
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=88.89 E-value=1 Score=40.50 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=55.1
Q ss_pred cCceEEEehhhhHHHHHHHHhcC--CCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032040 5 KSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 82 (148)
Q Consensus 5 ~~~V~T~~~G~AaS~AslIl~aG--~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~ 82 (148)
..|..+++.|-+++.|.+.+++. ..+..++.|++.+.+=.|. + +..+. +.+++.+..+. .+..
T Consensus 388 ~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v~~pe-~-----a~~i~-~~~~l~~~~~~-~~~~------- 452 (512)
T TIGR01117 388 TVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAVMGPA-G-----AANII-FRKDIKEAKDP-AATR------- 452 (512)
T ss_pred CCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEeecCHH-H-----HHHHH-hhhhcccccCH-HHHH-------
Confidence 57899999999999876555431 1356778888887775554 2 11111 11112110000 0000
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceeeecCchhhhc
Q 032040 83 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE 119 (148)
Q Consensus 83 ~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~~~~ 119 (148)
.+++.+.. +.+.++..+.+.|+||.|+++..-...
T Consensus 453 ~~~~~~~~--~~~~~~~~~a~~g~vD~VI~P~~tR~~ 487 (512)
T TIGR01117 453 KQKIAEYR--EEFANPYKAAARGYVDDVIEPKQTRPK 487 (512)
T ss_pred HHHHHHHH--HhhcCHHHHHhcCCCCeeEChHHHHHH
Confidence 11121111 236689999999999999988654433
No 132
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=87.59 E-value=0.47 Score=38.66 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=62.5
Q ss_pred CccccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 1 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 1 m~~i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
++..+.||..-+-|.|+-+|+-|.+.++ --.+.++|.|..--..+|-+.. ...+. |.+.--+=+.+|.-.||
T Consensus 121 Irn~pVPVia~VNG~AaAAGcQLVaSCD--~vVa~k~SkF~tPG~~vGlFCS-TPGvA-----laRavpRkva~~ML~Tg 192 (287)
T KOG1682|consen 121 IRNLPVPVIAKVNGYAAAAGCQLVASCD--MVVATKNSKFSTPGAGVGLFCS-TPGVA-----LARAVPRKVAAYMLMTG 192 (287)
T ss_pred HhcCCCceEEEecchhhhccceEEEeee--EEEEecCccccCCCCceeeEec-Ccchh-----HhhhcchhHHHHHHHhC
Confidence 3567899999999999999999888885 3467788888763322222222 22222 22233333445655676
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
+| +|++||+--|++.+|.+..
T Consensus 193 ~P-------------i~~eeAl~sGlvskvVp~~ 213 (287)
T KOG1682|consen 193 LP-------------ITGEEALISGLVSKVVPAE 213 (287)
T ss_pred CC-------------CchHHHHHhhhhhhcCCHH
Confidence 65 5899999999999998764
No 133
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=85.45 E-value=3.7 Score=37.61 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=54.0
Q ss_pred ccCceEEEehhhhHHHHHHHHhcC--CCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 81 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG--~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~ 81 (148)
...|+.|+++|-+++.|.+.++.. .++..++.|++.+-+=.|. | +..+- +..++.+..+.....-.+....
T Consensus 438 ~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~vmg~e-----~-aa~il-~~~e~~~~~~~~~~~~~~~~~~ 510 (569)
T PLN02820 438 AKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIGVMGGA-----Q-AAGVL-AQIERENKKRQGIQWSKEEEEA 510 (569)
T ss_pred CCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEEecCHH-----H-HHHHH-HHHHhhhhhhccccCCccHHHH
Confidence 467899999999999888777643 2345566677766553332 1 11111 1122221111000000000000
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceeeecCchh
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 116 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~ 116 (148)
-.+++.+..+ ...+|-.|-+.|+||+||++...
T Consensus 511 ~~~~~~~~~~--~~~~p~~aa~~~~vD~VIdP~dT 543 (569)
T PLN02820 511 FKAKTVEAYE--REANPYYSTARLWDDGVIDPADT 543 (569)
T ss_pred HHHHHHHHHH--HhCCHHHHHHcCCcCcccCHHHH
Confidence 0112222222 26789999999999999887543
No 134
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=76.66 E-value=2.3 Score=37.93 Aligned_cols=96 Identities=23% Similarity=0.215 Sum_probs=49.4
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCC--CCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHH-H--HHHHHHHhh
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGA--KGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANA-E--SYIELLAKG 78 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~--~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~-~--~l~~iya~~ 78 (148)
.+.|+.|+++|-+.+.|.+.+++.. .+..++.|++.+-+-.|. + +..+. +.++++... + .....
T Consensus 366 ~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm~~e-~-----a~~i~-~~~~~~~~~~~~~~~~~~---- 434 (493)
T PF01039_consen 366 ATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVMGPE-G-----AASIL-YRDELEAAEAEGADPEAQ---- 434 (493)
T ss_dssp H-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS-HH-H-----HHHHH-THHHHHHSCHCCHSHHHH----
T ss_pred CCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeecChh-h-----hheee-ehhhhhhhhcccchhHHH----
Confidence 4679999999999997775555431 235577777777665554 1 11111 111111110 0 00000
Q ss_pred cCCCHHHHHHhhcCCCcccHHHHHHcCCceeeecCch
Q 032040 79 TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 115 (148)
Q Consensus 79 Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~ 115 (148)
..+.+.+.. +...++..|.+.|++|.|+++..
T Consensus 435 ---~~~~~~~~~--~~~~~~~~~a~~~~~D~ii~p~~ 466 (493)
T PF01039_consen 435 ---RAEKIAEYE--DELSSPYRAASRGYVDDIIDPAE 466 (493)
T ss_dssp ---HHHHHHHHH--HHHSSHHHHHHTTSSSEESSGGG
T ss_pred ---HHHHHHHHH--HhcCCHHHHHhcCCCCCccCHHH
Confidence 001111111 22358899999999999999854
No 135
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=67.81 E-value=26 Score=29.32 Aligned_cols=81 Identities=10% Similarity=0.123 Sum_probs=50.5
Q ss_pred cCceEEEehhhhHHHHHHHHh-cCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 032040 5 KSKVYTVNCGMAYGQAAMLLS-VGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPK 83 (148)
Q Consensus 5 ~~~V~T~~~G~AaS~AslIl~-aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~~ 83 (148)
..|..+++.|-+.+.++..++ .| +-.++-|+|.+.+=-|. + +.+-++
T Consensus 193 ~vP~IsVv~gpt~GG~aas~a~~~--D~iia~p~A~ig~aGpr----------V-----------------ie~ti~--- 240 (285)
T TIGR00515 193 GLPYISVLTDPTTGGVSASFAMLG--DLNIAEPKALIGFAGPR----------V-----------------IEQTVR--- 240 (285)
T ss_pred CCCEEEEEeCCcchHHHHHHHhCC--CEEEEECCeEEEcCCHH----------H-----------------HHHHhc---
Confidence 468889998888777666664 55 45688888866652221 1 111122
Q ss_pred HHHHHhhcCCCcccHHHHHHcCCceeeecCchhhhchhh
Q 032040 84 EEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRD 122 (148)
Q Consensus 84 e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~~~~~~~ 122 (148)
+.+. +-+-+|+-..+.|+||.|+++..-...-..
T Consensus 241 ----e~lp-e~~q~ae~~~~~G~vD~iv~~~~~r~~l~~ 274 (285)
T TIGR00515 241 ----EKLP-EGFQTSEFLLEHGAIDMIVHRPEMKKTLAS 274 (285)
T ss_pred ----Cccc-hhcCCHHHHHhCCCCcEEECcHHHHHHHHH
Confidence 1122 336688888899999999887654443333
No 136
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=62.53 E-value=34 Score=28.77 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=46.9
Q ss_pred cCceEEEehhhhHHHHHHHHhc-CCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 032040 5 KSKVYTVNCGMAYGQAAMLLSV-GAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPK 83 (148)
Q Consensus 5 ~~~V~T~~~G~AaS~AslIl~a-G~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~~ 83 (148)
..|..++++|-+.+.++..++. | +..++-|+|.+-+=-|. -++ +-++
T Consensus 194 ~vP~IsVv~gpt~GG~aas~a~~~--D~iia~p~A~ig~aGpr---------vie------------------~~~~--- 241 (292)
T PRK05654 194 GLPYISVLTDPTTGGVSASFAMLG--DIIIAEPKALIGFAGPR---------VIE------------------QTVR--- 241 (292)
T ss_pred CCCEEEEEeCCCchHHHHHHHHcC--CEEEEecCcEEEecCHH---------HHH------------------hhhh---
Confidence 4688888888877776666554 5 35677888766652221 111 0011
Q ss_pred HHHHHhhcCCCcccHHHHHHcCCceeeecCchhhhc
Q 032040 84 EEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE 119 (148)
Q Consensus 84 e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~~~~ 119 (148)
+++. +-+-+++-+.+.|+||.|+++..-...
T Consensus 242 e~lp-----e~~~~ae~~~~~G~vD~Vv~~~e~r~~ 272 (292)
T PRK05654 242 EKLP-----EGFQRAEFLLEHGAIDMIVHRRELRDT 272 (292)
T ss_pred hhhh-----hhhcCHHHHHhCCCCcEEECHHHHHHH
Confidence 1111 125567778899999999887654433
No 137
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=57.80 E-value=10 Score=31.60 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=52.4
Q ss_pred cCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH
Q 032040 5 KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKE 84 (148)
Q Consensus 5 ~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~~e 84 (148)
+.|+.+.+-|=|-+.+.-|+.-++ --|+.. +.-+|-|.. .-|+..|--...- +-.+ .| ..
T Consensus 107 ~Kplia~vNGPAIGlgasil~lcD--~V~A~D--ka~F~TPfa--~lGq~PEG~Ss~t--------~p~i----mG--~~ 166 (266)
T KOG0016|consen 107 PKPLVALVNGPAIGLGASILPLCD--YVWASD--KAWFQTPFA--KLGQSPEGCSSVT--------LPKI----MG--SA 166 (266)
T ss_pred CCCEEEEecCCccchhhHHhhhhh--eEEecc--ceEEeccch--hcCCCCCcceeee--------ehHh----hc--hh
Confidence 678888888888888887877774 335654 446677773 2232221100000 0000 01 11
Q ss_pred HHHHhhcCCCcccHHHHHHcCCceeeecCc
Q 032040 85 EIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 114 (148)
Q Consensus 85 ~i~~~m~rd~~lta~EA~eyGlID~Ii~~~ 114 (148)
.-.++|--..-|+|+||.++|||++|....
T Consensus 167 ~A~E~ll~~~kltA~Ea~~~glVskif~~~ 196 (266)
T KOG0016|consen 167 SANEMLLFGEKLTAQEACEKGLVSKIFPAE 196 (266)
T ss_pred hHHHHHHhCCcccHHHHHhcCchhhhcChH
Confidence 222333344568999999999999998863
No 138
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=53.67 E-value=8.4 Score=23.06 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.0
Q ss_pred cCCCcccHHHHHHcCCcee
Q 032040 91 QRPKYMQAKEAIVYGLADK 109 (148)
Q Consensus 91 ~rd~~lta~EA~eyGlID~ 109 (148)
.....||-+||++.||||.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 3456799999999999995
No 139
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=52.79 E-value=31 Score=20.46 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=26.8
Q ss_pred HHHHHhhcCCCHHHHHHhhcCCCcccHHHHHH
Q 032040 72 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIV 103 (148)
Q Consensus 72 ~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~e 103 (148)
..-+++.+|++...|..+.......+.+.+..
T Consensus 12 ~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~ 43 (55)
T PF01381_consen 12 QKELAEKLGISRSTISRIENGKRNPSLDTLKK 43 (55)
T ss_dssp HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHH
T ss_pred HHHHHHHhCCCcchhHHHhcCCCCCCHHHHHH
Confidence 45688999999999999999999999988765
No 140
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=52.11 E-value=31 Score=22.92 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=21.7
Q ss_pred HHHHHHHhhcCCCHHHHHHhhcCCCcccH
Q 032040 70 SYIELLAKGTGKPKEEIAKDIQRPKYMQA 98 (148)
Q Consensus 70 ~l~~iya~~Tg~~~e~i~~~m~rd~~lta 98 (148)
.+.+.+++.+|.+..++++++... .+|+
T Consensus 45 ~~~~~lAk~~G~t~~~l~~~~~~G-kit~ 72 (75)
T TIGR02675 45 GALQALAKAMGVTRGELRKMLSDG-KLTA 72 (75)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCC-CCcc
Confidence 366778999999999999888665 3443
No 141
>smart00250 PLEC Plectin repeat.
Probab=51.36 E-value=10 Score=21.77 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.8
Q ss_pred CCCcccHHHHHHcCCceee
Q 032040 92 RPKYMQAKEAIVYGLADKI 110 (148)
Q Consensus 92 rd~~lta~EA~eyGlID~I 110 (148)
...-||-.||++.|+||.-
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 4456899999999999964
No 142
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=49.30 E-value=22 Score=23.14 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCC-CHHHHHHhhcCCCcccHHHHHHc
Q 032040 70 SYIELLAKGTGK-PKEEIAKDIQRPKYMQAKEAIVY 104 (148)
Q Consensus 70 ~l~~iya~~Tg~-~~e~i~~~m~rd~~lta~EA~ey 104 (148)
.+++-+.+-+|. |.++|.. |-+|..|+|.||++-
T Consensus 7 k~VQ~iKEiv~~hse~eIya-~L~ecnMDpnea~qr 41 (60)
T PF06972_consen 7 KTVQSIKEIVGCHSEEEIYA-MLKECNMDPNEAVQR 41 (60)
T ss_pred HHHHHHHHHhcCCCHHHHHH-HHHHhCCCHHHHHHH
Confidence 455556666776 8888855 557889999999875
No 143
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=45.86 E-value=1.1e+02 Score=24.50 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=25.4
Q ss_pred HHHHHhhcCCCHHHHHHhhcCCCcccHHHH
Q 032040 72 IELLAKGTGKPKEEIAKDIQRPKYMQAKEA 101 (148)
Q Consensus 72 ~~iya~~Tg~~~e~i~~~m~rd~~lta~EA 101 (148)
.+++++.+|.+.+.+...+....|.+..+.
T Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (300)
T TIGR01729 227 VQKMAKLIGGDAEGVPQLLKGLSFPTADEQ 256 (300)
T ss_pred HHHHHHHhCcCHHHHHHHHhcCCCCCHHHh
Confidence 467788899999999999999888888665
No 144
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=44.06 E-value=43 Score=28.26 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCCHHHHHHhhcCCCcc-cHHHHHHc
Q 032040 69 ESYIELLAKGTGKPKEEIAKDIQRPKYM-QAKEAIVY 104 (148)
Q Consensus 69 ~~l~~iya~~Tg~~~e~i~~~m~rd~~l-ta~EA~ey 104 (148)
+...+++++.+|++.+.+...+++..|+ ++++.+.+
T Consensus 226 ~ea~~~~ak~~g~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (328)
T TIGR03427 226 KAALEAMAKASGTDLAGYKAQLKTTKMFYTPKEAVAF 262 (328)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHhhccccCCHHHHHhh
Confidence 4578889999999999999999998874 66676654
No 145
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=42.24 E-value=64 Score=18.84 Aligned_cols=32 Identities=13% Similarity=-0.057 Sum_probs=24.5
Q ss_pred HHHHHhhcCCCHHHHHHhhcCCCcccHHHHHH
Q 032040 72 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIV 103 (148)
Q Consensus 72 ~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~e 103 (148)
..-+++.+|.+...|..+.....-.+.+....
T Consensus 18 q~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~~ 49 (58)
T TIGR03070 18 QADLADLAGVGLRFIRDVENGKPTVRLDKVLR 49 (58)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHH
Confidence 56688999999999999887776666665543
No 146
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.81 E-value=1e+02 Score=21.68 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=36.6
Q ss_pred cCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhh
Q 032040 37 NSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDI 90 (148)
Q Consensus 37 na~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m 90 (148)
+..+-++.+ ...+++...+.++.-++.+...++++.|+|++++....
T Consensus 25 dGyL~~v~~-------~~~~~~~lV~~~N~~R~~~Y~~iA~~ng~t~~~V~~~~ 71 (95)
T PF07027_consen 25 DGYLGVVTS-------ASAEVRALVAAINADRRALYQEIAKKNGITVEQVAATA 71 (95)
T ss_pred CceEEecCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 455555443 34678888899999999999999999999999986543
No 147
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=40.45 E-value=37 Score=28.06 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=60.9
Q ss_pred ccCceEEEehhhhHHHHHHHHhcCCCCceeecccCeeeeecCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032040 4 CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV---GRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 80 (148)
Q Consensus 4 i~~~V~T~~~G~AaS~AslIl~aG~~~~R~a~pna~iMIH~p~~---~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg 80 (148)
++-||..-++|.|-+-+-=+.++++ -|.+..++.+-+-.-.. .+..|+ ..+- +.+--
T Consensus 123 Lp~P~IAAidG~ALGGGLElALACD--iRva~s~akmGLvET~laiiPGaGGt-QRLp----------R~vg~------- 182 (291)
T KOG1679|consen 123 LPQPVIAAIDGAALGGGLELALACD--IRVAASSAKMGLVETKLAIIPGAGGT-QRLP----------RIVGV------- 182 (291)
T ss_pred CCccceehhcchhcccchhhhhhcc--ceehhhhccccccccceeeecCCCcc-chhH----------HHHhH-------
Confidence 5778999999999999988888884 68888888776643221 123343 2221 11111
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceeeecCchhh
Q 032040 81 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAA 117 (148)
Q Consensus 81 ~~~e~i~~~m~rd~~lta~EA~eyGlID~Ii~~~~~~ 117 (148)
..-++++.....|++.||...|+|.++++.+.+-
T Consensus 183 ---alaKELIftarvl~g~eA~~lGlVnhvv~qneeg 216 (291)
T KOG1679|consen 183 ---ALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEG 216 (291)
T ss_pred ---HHHHhHhhhheeccchhHHhcchHHHHHhcCccc
Confidence 1123445556778999999999999998876543
No 148
>PHA00099 minor capsid protein
Probab=40.36 E-value=1.6e+02 Score=22.23 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHHHHHHH---HHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcCCc
Q 032040 53 PVTDMWRKAKDLEANAESYI---ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLA 107 (148)
Q Consensus 53 ~~~dl~~~a~~l~~~~~~l~---~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyGlI 107 (148)
+..|.....+-+.+..+.+. .-+.++.|-+++++.+++.++. +-+||+..||+
T Consensus 59 sp~D~qeAl~~V~~~qeaFdsLPA~iR~~F~NdP~eml~~L~dp~--NydEa~~LGl~ 114 (147)
T PHA00099 59 SPMDYQEALNVVIEAQEAFDSLPAKIRERFGNDPEEMLDFLSDPE--NYDEAKALGLV 114 (147)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhHHHHHHhCCCHHHHHHHHcChh--hHHHHHhccee
Confidence 44555555554444444433 3367788999999988888764 45899999999
No 149
>PRK09726 antitoxin HipB; Provisional
Probab=39.37 E-value=96 Score=20.71 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCcccHHH----HHHcCCceeee
Q 032040 54 VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKE----AIVYGLADKII 111 (148)
Q Consensus 54 ~~dl~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m~rd~~lta~E----A~eyGlID~Ii 111 (148)
...|....+.+...+..-..-+++++|++...|..+.......+.+. |..+|+--.+.
T Consensus 10 ~~~l~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~~~ 71 (88)
T PRK09726 10 PTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLC 71 (88)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcchh
Confidence 45565555555544444467799999999999999988776666654 34456544443
No 150
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=35.25 E-value=83 Score=25.42 Aligned_cols=68 Identities=15% Similarity=0.047 Sum_probs=32.1
Q ss_pred HHHHHHhcCCCCce-eecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--HHHHHHhhcC
Q 032040 19 QAAMLLSVGAKGYR-GLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP--KEEIAKDIQR 92 (148)
Q Consensus 19 ~AslIl~aG~~~~R-~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~iya~~Tg~~--~e~i~~~m~r 92 (148)
+-.||+.++-+..| .-.+|.++|||.-. . ..+....++.++..-+.+.+.+....... ..++++..++
T Consensus 7 i~~Fll~~Air~~rg~~~~~~SMLIH~S~---~---~~~h~~~~~~I~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 77 (239)
T PF10593_consen 7 IRWFLLACAIRRLRGQGNKHNSMLIHTSR---F---VDVHEQVADWIEEYLNELKKALRYNDDDPEELNELRELWEE 77 (239)
T ss_pred HHHHHHHHHHHHHhCCCCCCceeEEECcc---c---HHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 34455554422111 12367899999654 2 33444444444444444444444433333 4455444443
No 151
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=34.09 E-value=69 Score=20.75 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=21.4
Q ss_pred HHHHHHhhcCCCHHHHHHhhcCC-CcccHHHH
Q 032040 71 YIELLAKGTGKPKEEIAKDIQRP-KYMQAKEA 101 (148)
Q Consensus 71 l~~iya~~Tg~~~e~i~~~m~rd-~~lta~EA 101 (148)
+..-+.++||++++++.+.++.. -.....|-
T Consensus 5 y~~~Ie~kTGk~~~~W~~~~~~~~~~~k~~e~ 36 (61)
T PF14117_consen 5 YLPNIEKKTGKTLDEWLALAREGGPLTKHGEI 36 (61)
T ss_pred HHhHhHHHHCcCHHHHHHHHHHhCCCCcHHHH
Confidence 44456788999999998887665 44444443
No 152
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=32.21 E-value=1.2e+02 Score=25.22 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=41.9
Q ss_pred HHHHHHHH-HhhcCCCHHHHHHhhcC-----CCcccHHHHHHcCCceeeecCchhhhchhhHHHHHHHHHHhhhhcCCC
Q 032040 68 AESYIELL-AKGTGKPKEEIAKDIQR-----PKYMQAKEAIVYGLADKIIDSQDAAYEKRDYDMMLAQQMSMEREAGGP 140 (148)
Q Consensus 68 ~~~l~~iy-a~~Tg~~~e~i~~~m~r-----d~~lta~EA~eyGlID~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (148)
.+++.+.| ..|+++|.+.+.+...+ ..-||.-||++. .|.++++..-..+-.+..-+|.-+++-|+.-|.|
T Consensus 5 ~~~V~~~Y~~~h~~QTv~fv~~~~~~~~~~~~~~Mti~eA~~~--L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~ 81 (253)
T PF05153_consen 5 CDRVKEFYRLQHTNQTVDFVKKMRAKYLKFDHAEMTIWEALEL--LNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDP 81 (253)
T ss_dssp HHHHHHHHHHHHCC--HHHHHHHHHHHTT--SEEE-HHHHHHH--GGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCcceeeHHHHHHH--HHHhccCccCCCchhHHHHHHHHHHHHHHhCCCc
Confidence 45666777 46799999877655432 345999999884 5555554444445567888888888888875654
No 153
>PF12535 Nudix_N: Hydrolase of X-linked nucleoside diphosphate N terminal ; PDB: 3Q1P_B 3Q4I_B.
Probab=31.41 E-value=35 Score=21.83 Aligned_cols=28 Identities=36% Similarity=0.304 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHh
Q 032040 62 KDLEANAESYIELLAKGTGKPKEEIAKD 89 (148)
Q Consensus 62 ~~l~~~~~~l~~iya~~Tg~~~e~i~~~ 89 (148)
+..+++++...++++..|+.+.++|..+
T Consensus 29 ERy~~lr~ia~ella~~s~~~~e~i~~l 56 (58)
T PF12535_consen 29 ERYEELREIAAELLAEYSDLPPEEIKEL 56 (58)
T ss_dssp HHHHHHHHHHHHHHCCHTT--HHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4556677888899999999999998654
No 154
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=30.31 E-value=1e+02 Score=25.48 Aligned_cols=32 Identities=28% Similarity=0.538 Sum_probs=23.5
Q ss_pred CHHHHHHhhcCCCc---------ccHHHHH----HcCCceeeecCc
Q 032040 82 PKEEIAKDIQRPKY---------MQAKEAI----VYGLADKIIDSQ 114 (148)
Q Consensus 82 ~~e~i~~~m~rd~~---------lta~EA~----eyGlID~Ii~~~ 114 (148)
..+.+...++++.| ||++||+ +|| .|+|+-+.
T Consensus 166 N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~-~~r~ilnS 210 (254)
T COG1099 166 NEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYG-AERIILNS 210 (254)
T ss_pred cHHHHHHHHhccceEEEEecCCcCCHHHHHHHHHHhC-cceEEEec
Confidence 45677777888776 6899995 688 78776643
No 155
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=29.40 E-value=2.5e+02 Score=21.22 Aligned_cols=43 Identities=23% Similarity=0.371 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCCceeecccCeeeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 032040 19 QAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE 73 (148)
Q Consensus 19 ~AslIl~aG~~~~R~a~pna~iMIH~p~~~~~~G~~~dl~~~a~~l~~~~~~l~~ 73 (148)
..+||.+||. |.+.. +| ++.-.+...|+.+++.++..++++-+
T Consensus 12 ~~~~Lvsc~~-------p~~~~---p~--tysp~~l~~i~~~~~~i~~~~~r~~e 54 (142)
T TIGR03042 12 LLTFLVSCSG-------PAAAV---PP--TYSPAQLAQIQRQAEGIEAAKDRLPE 54 (142)
T ss_pred HHHHHHHcCC-------CcccC---CC--CCCHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5666666663 22322 33 33334455666677777777766544
No 156
>PF04033 DUF365: Domain of unknown function (DUF365); InterPro: IPR007176 This is an archaeal family of unknown function.; PDB: 2KKU_A.
Probab=29.04 E-value=47 Score=23.48 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=17.7
Q ss_pred CHHHHHHhhcCCCcccHHHHHHc
Q 032040 82 PKEEIAKDIQRPKYMQAKEAIVY 104 (148)
Q Consensus 82 ~~e~i~~~m~rd~~lta~EA~ey 104 (148)
++++|.+-.....|||++|..+|
T Consensus 28 n~~ei~ekygd~lFLT~eE~r~Y 50 (97)
T PF04033_consen 28 NPEEIIEKYGDRLFLTKEELRKY 50 (97)
T ss_dssp -THHHHHHTSTTBSS-HHHHHHH
T ss_pred CHHHHHHHhCcceecCHHHHHHH
Confidence 46778788888899999999887
No 157
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=28.64 E-value=2.3e+02 Score=20.56 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHHHHHH---HHHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcCCceee
Q 032040 53 PVTDMWRKAKDLEANAESY---IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 110 (148)
Q Consensus 53 ~~~dl~~~a~~l~~~~~~l---~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~I 110 (148)
++.|.....+-+-+..+.+ =.-..++.|-+++++.++++++. +-+|++..||.|.=
T Consensus 29 sp~D~qeAln~Vie~~eaFdsLPAkvRe~FgNdPeeml~~L~d~~--nyde~~algll~~e 87 (114)
T TIGR02763 29 SPLDYQEALNIVIEGEEAFDSLPAKVRENFGNDPEEMLSWLEDEA--NYDEVEALGLLDPE 87 (114)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHHHhCCCHHHHHHHHhChh--hHHHHHHhcccccc
Confidence 3455554444444444433 33356788999999999887753 23678899998853
No 158
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=27.77 E-value=53 Score=22.74 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=14.1
Q ss_pred CcccHHHHHHcCCce
Q 032040 94 KYMQAKEAIVYGLAD 108 (148)
Q Consensus 94 ~~lta~EA~eyGlID 108 (148)
.||+++.|.++||.|
T Consensus 37 v~in~~dA~~lgi~~ 51 (122)
T cd02791 37 VEIHPEDAARLGLKE 51 (122)
T ss_pred EEECHHHHHHcCCCC
Confidence 799999999999996
No 159
>PF02742 Fe_dep_repr_C: Iron dependent repressor, metal binding and dimerisation domain; InterPro: IPR001367 The diphtheria toxin repressor protein (DTXR) is a member of this group []. In Corynebacterium diphtheriae where it has been studied in some detail this protein acts as an iron-binding repressor of dipheteria toxin gene expression and may serve as a global regulator of gene expression. The N terminus may be involved in iron binding and may associate with the Tox operator. Binding of DTXR to Tox operator requires a divalent metal ion such as cobalt, ferric, manganese and nickel whereas zinc shows weak activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005506 iron ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2X4H_D 2H09_A 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A 2F5D_A 3R61_A ....
Probab=26.99 E-value=1.6e+02 Score=18.86 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcC-CCcccHHH
Q 032040 58 WRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQR-PKYMQAKE 100 (148)
Q Consensus 58 ~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m~r-d~~lta~E 100 (148)
+..++.+.+-.+.+...+.+..|++.++..+.-.+ +..+|.+-
T Consensus 5 ~~~A~~i~~rH~~le~fl~~~lgv~~~~a~~~A~~iEH~is~e~ 48 (71)
T PF02742_consen 5 REIAERILRRHRILEEFLVEVLGVDEEEAEEEACRIEHVISPET 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHGCCS-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCHHH
Confidence 34566777666777777779999999988766444 66666653
No 160
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=26.92 E-value=1.5e+02 Score=18.00 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHhhcCC-CcccHHH
Q 032040 68 AESYIELLAKGTGKPKEEIAKDIQRP-KYMQAKE 100 (148)
Q Consensus 68 ~~~l~~iya~~Tg~~~e~i~~~m~rd-~~lta~E 100 (148)
+..-..-+++.+|++...+..+..+. ..++.+.
T Consensus 9 ~~it~~~La~~~gis~~tl~~~~~~~~~~~~~~~ 42 (63)
T PF13443_consen 9 RGITQKDLARKTGISRSTLSRILNGKPSNPSLDT 42 (63)
T ss_dssp TT--HHHHHHHHT--HHHHHHHHTTT-----HHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhcccccccHHH
Confidence 33344557888999999999998877 4566554
No 161
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=26.37 E-value=3.3e+02 Score=22.20 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=28.2
Q ss_pred HHHHHhhcCCCHHHHHHhhcCCCcccHHHHHHc
Q 032040 72 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVY 104 (148)
Q Consensus 72 ~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~ey 104 (148)
..++++.+|.+++.+...+....|.+.+|....
T Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (320)
T PRK11480 249 ISKLARLSGVPEGDVPGLVKGNTYLTPQQQTAE 281 (320)
T ss_pred HHHHHHHhCcCHHHHHHHHccCCCCCHHHHHHH
Confidence 457888899999999999999999998877664
No 162
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=25.97 E-value=2e+02 Score=18.87 Aligned_cols=49 Identities=22% Similarity=0.199 Sum_probs=28.6
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHhhc-CCCHHHHHHhhcCCCcccHHHHHH
Q 032040 55 TDMWRKAKDLE--ANAESYIELLAKGT-GKPKEEIAKDIQRPKYMQAKEAIV 103 (148)
Q Consensus 55 ~dl~~~a~~l~--~~~~~l~~iya~~T-g~~~e~i~~~m~rd~~lta~EA~e 103 (148)
-+|-..+.+|+ .+-+...+.++... |+|+++|++.+.=..-+|++|.-+
T Consensus 17 ~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~ 68 (78)
T PF01466_consen 17 FDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEE 68 (78)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHH
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHH
Confidence 34445555553 33344455555553 899999999987777788877543
No 163
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by Pfam model pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair.
Probab=25.93 E-value=1.1e+02 Score=19.37 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=25.9
Q ss_pred HHHHHhhcCCCHHHHHHhhcCCCcccHHHHHH
Q 032040 72 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIV 103 (148)
Q Consensus 72 ~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~e 103 (148)
..-+++++|++...|..+.+....++.+.+..
T Consensus 21 ~~~lA~~~gis~~tis~~~~g~~~~~~~~~~~ 52 (78)
T TIGR02607 21 IRALAKALGVSRSTLSRIVNGRRGITADMALR 52 (78)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 45688999999999999988877788877553
No 164
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=25.87 E-value=2.6e+02 Score=22.34 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHh---h--cCCCcccHHHHHHcCCcee
Q 032040 68 AESYIELLAKGTGKPKEEIAKD---I--QRPKYMQAKEAIVYGLADK 109 (148)
Q Consensus 68 ~~~l~~iya~~Tg~~~e~i~~~---m--~rd~~lta~EA~eyGlID~ 109 (148)
++.+.++|..+ |.++++.++. + +++.|+...=..|+|+.++
T Consensus 83 ~~el~~iy~~k-G~~~~~a~~v~~~l~~~~~~~~~~m~~~elg~~~~ 128 (225)
T cd02434 83 KSEMVEIYSLK-GLSEEVADQVVELLSKYRKLFVDIMMTEELGLIPD 128 (225)
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHhCchhhHHHHHHhhccCCCC
Confidence 34577888766 7887765442 2 4578888877888998543
No 165
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=25.71 E-value=99 Score=22.26 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=28.3
Q ss_pred HHHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcC
Q 032040 72 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYG 105 (148)
Q Consensus 72 ~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyG 105 (148)
..-+++..|.+...|.++++.-.-+|++-|+..+
T Consensus 26 ~~~lA~~lgV~r~~is~ling~~~iT~dmAlrL~ 59 (104)
T COG3093 26 QTELAEALGVTRNTISELINGRRAITADMALRLA 59 (104)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCcCCCHHHHHHHH
Confidence 4457788889999999999999999999988765
No 166
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=25.62 E-value=21 Score=26.18 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=2.9
Q ss_pred cCCCcccHHHHHHcCCceeeec
Q 032040 91 QRPKYMQAKEAIVYGLADKIID 112 (148)
Q Consensus 91 ~rd~~lta~EA~eyGlID~Ii~ 112 (148)
.+..|+|||||+-.||.--|+.
T Consensus 16 ~~~syitAEEAaGIGiL~VILg 37 (118)
T PF14991_consen 16 KGHSYITAEEAAGIGILIVILG 37 (118)
T ss_dssp ------------SSS-------
T ss_pred CCcceeeHHHhccceeHHHHHH
Confidence 4568999999999999988876
No 167
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=24.96 E-value=1.8e+02 Score=17.97 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHhhcCCCHHHHHHhh
Q 032040 56 DMWRKAKDLEANAES-----YIELLAKGTGKPKEEIAKDI 90 (148)
Q Consensus 56 dl~~~a~~l~~~~~~-----l~~iya~~Tg~~~e~i~~~m 90 (148)
-|-.+...|+.+++. -..-+++.+|++..+|++|+
T Consensus 10 RL~~Y~r~L~~l~~~G~~~vSS~~La~~~gi~~~qVRKDl 49 (50)
T PF06971_consen 10 RLPLYLRYLEQLKEEGVERVSSQELAEALGITPAQVRKDL 49 (50)
T ss_dssp HHHHHHHHHHHHHHTT-SEE-HHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeeECHHHHHHHHCCCHHHhcccC
Confidence 344555666666541 24568999999999999986
No 168
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=24.40 E-value=71 Score=22.35 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=15.2
Q ss_pred CCCcccHHHHHHcCCce
Q 032040 92 RPKYMQAKEAIVYGLAD 108 (148)
Q Consensus 92 rd~~lta~EA~eyGlID 108 (148)
...||+++.|.++||-|
T Consensus 30 ~~v~i~p~~A~~~gi~~ 46 (121)
T cd02794 30 QEVWINPLDAAARGIKD 46 (121)
T ss_pred CCEEECHHHHHHcCCCC
Confidence 35799999999999997
No 169
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=24.10 E-value=45 Score=24.97 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.0
Q ss_pred hcCCCHHHHHHhhcCCCcccHH
Q 032040 78 GTGKPKEEIAKDIQRPKYMQAK 99 (148)
Q Consensus 78 ~Tg~~~e~i~~~m~rd~~lta~ 99 (148)
.-|++.++|.+.+.+++-|+++
T Consensus 102 ~eG~s~eei~~ki~~e~kl~pd 123 (131)
T PF08004_consen 102 SEGKSEEEIAEKISRETKLSPD 123 (131)
T ss_pred HcCCCHHHHHHHHHHhhcCCHH
Confidence 3589999999999999988885
No 170
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=23.76 E-value=1.5e+02 Score=16.71 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHH
Q 032040 57 MWRKAKDLEANAESYIELLAKGTGKPKEEIA 87 (148)
Q Consensus 57 l~~~a~~l~~~~~~l~~iya~~Tg~~~e~i~ 87 (148)
|...++.+---...+.+.+.+.+|.++.++.
T Consensus 11 l~~iA~~~g~S~~~f~r~Fk~~~g~tp~~y~ 41 (42)
T PF00165_consen 11 LEDIAEQAGFSPSYFSRLFKKETGMTPKQYR 41 (42)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHTSS-HHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCcCHHHHh
Confidence 4444444444456788888888998887653
No 171
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.69 E-value=46 Score=22.97 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=14.9
Q ss_pred CCcccHHHHHHcCCce
Q 032040 93 PKYMQAKEAIVYGLAD 108 (148)
Q Consensus 93 d~~lta~EA~eyGlID 108 (148)
..||+++.|.++||-|
T Consensus 32 ~v~i~p~dA~~lgI~d 47 (112)
T cd02787 32 VVFMNPDDIARLGLKA 47 (112)
T ss_pred EEEECHHHHHHhCCCC
Confidence 3899999999999998
No 172
>PRK02866 cyanate hydratase; Validated
Probab=23.05 E-value=1.8e+02 Score=22.08 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCCHHHHHHhhcCCCcccHHHHHHcC
Q 032040 71 YIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYG 105 (148)
Q Consensus 71 l~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~eyG 105 (148)
-.+-+++.+|+++.-+...+.+-.-+++++|...+
T Consensus 20 Tw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla 54 (147)
T PRK02866 20 TWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKVA 54 (147)
T ss_pred CHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHH
Confidence 35667888999999999999999999999997753
No 173
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=22.48 E-value=44 Score=22.71 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=13.0
Q ss_pred CCcccHHHHHHcCCce
Q 032040 93 PKYMQAKEAIVYGLAD 108 (148)
Q Consensus 93 d~~lta~EA~eyGlID 108 (148)
-.||++++|.++||-|
T Consensus 31 ~v~inp~dA~~~Gi~~ 46 (110)
T PF01568_consen 31 FVEINPEDAAKLGIKD 46 (110)
T ss_dssp EEEEEHHHHHHCT--T
T ss_pred EEEEcHHHHHHhcCcC
Confidence 5899999999999987
No 174
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=22.46 E-value=98 Score=26.22 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=31.7
Q ss_pred CceEEEehhh--hHHHHHHHHhcCCCCceeecccCeeeeecCC
Q 032040 6 SKVYTVNCGM--AYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 46 (148)
Q Consensus 6 ~~V~T~~~G~--AaS~AslIl~aG~~~~R~a~pna~iMIH~p~ 46 (148)
.|+.+++.|- |++-++++++++ +..+|.+++++.+--|.
T Consensus 146 VP~I~vv~G~~gc~GG~a~~a~l~--D~iIm~~~a~iglaGP~ 186 (301)
T PRK07189 146 VPVIGLIGGRVGCFGGMGIAAALC--SYLIVSEEGRLGLSGPE 186 (301)
T ss_pred CCEEEEEcCCCCCcHHHHHHHhcC--CEEEEECCcEEeccCHH
Confidence 6899999998 888888888778 46788899988876663
No 175
>PF13171 DUF4004: Protein of unknown function (DUF4004)
Probab=21.78 E-value=2.2e+02 Score=22.79 Aligned_cols=44 Identities=9% Similarity=0.050 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHhh---cCCCcccHHHHHHcCCceee
Q 032040 67 NAESYIELLAKGTGKPKEEIAKDI---QRPKYMQAKEAIVYGLADKI 110 (148)
Q Consensus 67 ~~~~l~~iya~~Tg~~~e~i~~~m---~rd~~lta~EA~eyGlID~I 110 (148)
+-+++.+|..-+=..|.|++.++. ..+.-++.++-++.|+|+..
T Consensus 52 IL~RIekI~~mKd~~SLDELA~mfSp~~~~~~~~~~~l~~~~ivs~~ 98 (199)
T PF13171_consen 52 ILERIEKIQKMKDDLSLDELAEMFSPNVSDVVFTEEELLKRNIVSQA 98 (199)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHcCCCcccceecHHHHHHcCcccHH
Confidence 344555666666678999998888 46789999999999998854
No 176
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=21.70 E-value=55 Score=22.53 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=14.8
Q ss_pred CCcccHHHHHHcCCce
Q 032040 93 PKYMQAKEAIVYGLAD 108 (148)
Q Consensus 93 d~~lta~EA~eyGlID 108 (148)
..||+++.|.++||-|
T Consensus 32 ~v~i~p~dA~~lgi~~ 47 (116)
T cd02786 32 TLLIHPADAAARGIAD 47 (116)
T ss_pred EEEECHHHHHHcCCCC
Confidence 4899999999999997
No 177
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=21.44 E-value=1.6e+02 Score=18.02 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=23.8
Q ss_pred HHHHHhhcCCCHHHHHHhhcCC--CcccHHHH
Q 032040 72 IELLAKGTGKPKEEIAKDIQRP--KYMQAKEA 101 (148)
Q Consensus 72 ~~iya~~Tg~~~e~i~~~m~rd--~~lta~EA 101 (148)
.+.|.+..+.|.+.|.+.+..+ -=||.+||
T Consensus 10 Ak~Y~~~~~~Sk~~l~~QL~se~ge~Ft~e~A 41 (48)
T PF07553_consen 10 AKSYLKTMHMSKQGLYDQLTSEYGEGFTEEEA 41 (48)
T ss_pred HHHHHHhccCCHHHHHHHHHhhcccCCCHHHH
Confidence 4568888889999998888776 46888877
No 178
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=21.31 E-value=56 Score=22.98 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=14.8
Q ss_pred CCcccHHHHHHcCCce
Q 032040 93 PKYMQAKEAIVYGLAD 108 (148)
Q Consensus 93 d~~lta~EA~eyGlID 108 (148)
..|++++.|.++||.|
T Consensus 33 ~v~i~p~dA~~~gi~~ 48 (124)
T cd02785 33 RVKINPIDAAARGIAH 48 (124)
T ss_pred eEEECHHHHHHcCCCC
Confidence 3799999999999998
No 179
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=21.31 E-value=1.1e+02 Score=25.65 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=30.4
Q ss_pred CceEEEehhh--hHHHHHHHHhcCCCCceeecccCeeeeecCC
Q 032040 6 SKVYTVNCGM--AYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 46 (148)
Q Consensus 6 ~~V~T~~~G~--AaS~AslIl~aG~~~~R~a~pna~iMIH~p~ 46 (148)
.|+.+++.|- |++-++++.+.+ +..+|.|++++.+--|.
T Consensus 137 vP~Isvv~Gp~gc~GG~a~~a~l~--D~vim~~~a~i~~aGP~ 177 (274)
T TIGR03133 137 VPVIGVIGGRVGCFGGMGIAAGLC--SYLIMTEEGRLGLSGPE 177 (274)
T ss_pred CCEEEEEeCCCCcchHHHHHHhcC--CEEEEeCCcEEeccCHH
Confidence 6999999999 677777777777 46688888877775553
No 180
>PF14420 Clr5: Clr5 domain
Probab=21.16 E-value=1.3e+02 Score=18.60 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHhhcCCCcccHH
Q 032040 63 DLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAK 99 (148)
Q Consensus 63 ~l~~~~~~l~~iya~~Tg~~~e~i~~~m~rd~~lta~ 99 (148)
+-+..+..+.++|. .-++|.++|.+.|....-|.|.
T Consensus 4 ~We~~K~~I~~LY~-~e~~tl~~v~~~M~~~~~F~at 39 (54)
T PF14420_consen 4 DWEPHKEEIERLYI-DENKTLEEVMEIMKEEHGFKAT 39 (54)
T ss_pred hHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHhCCCcC
Confidence 34556777888886 3468999999999887777765
No 181
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.88 E-value=84 Score=21.69 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=17.2
Q ss_pred HHHhhcCC-CcccHHHHHHcCCce
Q 032040 86 IAKDIQRP-KYMQAKEAIVYGLAD 108 (148)
Q Consensus 86 i~~~m~rd-~~lta~EA~eyGlID 108 (148)
+.+..... .||+++.|.++||-|
T Consensus 28 l~~~~~~~~v~i~p~dA~~lgi~~ 51 (122)
T cd02792 28 LAELQPEMFVEISPELAAERGIKN 51 (122)
T ss_pred HHhhCCCcEEEECHHHHHHcCCCC
Confidence 33334333 899999999999985
No 182
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=20.41 E-value=3.5e+02 Score=19.75 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=35.6
Q ss_pred CCCCHH---HHHHHHHHHHHHHHHHHHH---HHhhcCCCHHHHHHhhcCCCcccHHHHHHcCCcee
Q 032040 50 SSGPVT---DMWRKAKDLEANAESYIEL---LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADK 109 (148)
Q Consensus 50 ~~G~~~---dl~~~a~~l~~~~~~l~~i---ya~~Tg~~~e~i~~~m~rd~~lta~EA~eyGlID~ 109 (148)
.+|.-. |.....+-+.+.++.+..+ ..++.|-++.++.+...+.. +.+|+++.||++.
T Consensus 23 ~Ygd~s~~~DyqeAln~V~e~~eaFd~LPa~iRe~F~N~P~efl~f~~dp~--N~ee~~~Lgl~~~ 86 (114)
T PF09675_consen 23 EYGDCSSPFDYQEALNMVAEANEAFDELPAHIRERFNNDPEEFLEFLNDPK--NYEEAIKLGLLEP 86 (114)
T ss_pred cccccCCHHhHHHHHHHHHHHHHHHHHchHHHHHHhCCCHHHHHHHHhCcc--CHHHHHHhccccC
Confidence 455443 4444444444444443333 56777888888877666543 6799999998853
No 183
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=20.29 E-value=2.2e+02 Score=17.25 Aligned_cols=34 Identities=15% Similarity=-0.011 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCCHHHHHHhhcCCCcccHHHHHH
Q 032040 70 SYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIV 103 (148)
Q Consensus 70 ~l~~iya~~Tg~~~e~i~~~m~rd~~lta~EA~e 103 (148)
.-..-+++.+|++...|..+.....-++....+.
T Consensus 13 lt~~~~a~~~~i~~~~i~~~e~g~~~~~~~~l~~ 46 (64)
T PF12844_consen 13 LTQKDLAEKLGISRSTISKIENGKRKPSVSTLKK 46 (64)
T ss_dssp --HHHHHHHHTS-HHHHHHHHTTSS--BHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHCCCcCCCHHHHHH
Confidence 3455577888999999988888888777766643
No 184
>cd02775 MopB_CT Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=20.28 E-value=62 Score=21.33 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=15.3
Q ss_pred CCCcccHHHHHHcCCce
Q 032040 92 RPKYMQAKEAIVYGLAD 108 (148)
Q Consensus 92 rd~~lta~EA~eyGlID 108 (148)
...||++++|+++||.|
T Consensus 23 ~~v~~~~~da~~lgl~~ 39 (101)
T cd02775 23 PVVEINPEDAAALGIKD 39 (101)
T ss_pred CEEEECHHHHHHcCCCC
Confidence 35899999999999996
No 185
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=20.27 E-value=2.7e+02 Score=26.93 Aligned_cols=74 Identities=26% Similarity=0.345 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhcC-----CCcccH--HHHHHcCCceeee--cCchhhhchhhHHHHHHHH
Q 032040 60 KAKDLEANAESYIELLAKGTGKPKEEIAKDIQR-----PKYMQA--KEAIVYGLADKII--DSQDAAYEKRDYDMMLAQQ 130 (148)
Q Consensus 60 ~a~~l~~~~~~l~~iya~~Tg~~~e~i~~~m~r-----d~~lta--~EA~eyGlID~Ii--~~~~~~~~~~~~~~~~~~~ 130 (148)
..+.|...++.+.+.+.. |-|.++|.++|+. +.||.+ +++.+..--...- ..........|+++||.+-
T Consensus 470 A~~~Lr~AQe~L~eAL~~--gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mmd~i 547 (820)
T PF13779_consen 470 AERRLRAAQEALREALER--GASDEEIARLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMMDRI 547 (820)
T ss_pred HHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHHHHHHHH
Confidence 345566666777777754 7889999999976 566665 5665554332221 1234567889999999887
Q ss_pred HHhhh
Q 032040 131 MSMER 135 (148)
Q Consensus 131 ~~~~~ 135 (148)
+..-+
T Consensus 548 e~la~ 552 (820)
T PF13779_consen 548 EELAR 552 (820)
T ss_pred HHHHH
Confidence 76544
No 186
>PHA01976 helix-turn-helix protein
Probab=20.27 E-value=2.2e+02 Score=17.38 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=21.8
Q ss_pred HHHHHHhhcCCCHHHHHHhhcCCCcccHHHH
Q 032040 71 YIELLAKGTGKPKEEIAKDIQRPKYMQAKEA 101 (148)
Q Consensus 71 l~~iya~~Tg~~~e~i~~~m~rd~~lta~EA 101 (148)
-..-+++.+|.+...|.++.....-.+.+..
T Consensus 17 t~~~lA~~~gvs~~~v~~~e~g~~~p~~~~l 47 (67)
T PHA01976 17 SAPELSRRAGVRHSLIYDFEADKRLPNLKTL 47 (67)
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHH
Confidence 3556888888888888887776655555443
Done!