BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032042
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
Length = 175
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 14 SACSKKALQWAADNVVRNGDH-----LILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFS 68
S K+A +W + +VR+ L+ V VV E G + + + ++
Sbjct: 24 SISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVD--------------SIYA 69
Query: 69 EPTIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFW---GDPREKICEAIDKIPLSCLV 125
P + + L ++ + + V W GDP++ IC+ + ++ LV
Sbjct: 70 SPEDFRDXRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLV 129
Query: 126 IGNRGLGKLKRL 137
+G+RGLG+ +++
Sbjct: 130 VGSRGLGRFQKV 141
>pdb|3RPE|A Chain A, 1.1 Angstrom Crystal Structure Of Putative Modulator Of
Drug Activity (Mdab) From Yersinia Pestis Co92.
pdb|3RPE|B Chain B, 1.1 Angstrom Crystal Structure Of Putative Modulator Of
Drug Activity (Mdab) From Yersinia Pestis Co92
Length = 218
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 15 ACSKKALQWAADNV----VRNGDHLILVTVVPEG-GLEKG-EQQLWEDSGSPLIPLAEFS 68
A SK AL NV +R H + +T V +G +E E LW D+ +P
Sbjct: 38 AHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQMPAWWMG 97
Query: 69 EPTIMKKY 76
EP I+KKY
Sbjct: 98 EPWILKKY 105
>pdb|1FIM|A Chain A, Macrophage Migration Inhibitory Factor
Length = 114
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 41 VPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVAR 93
VPEG L + QQL + +G P +A P + + DP L ++++ +
Sbjct: 14 VPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLXTFSGTSDPCALCSLHSIGK 66
>pdb|1MFF|A Chain A, Macrophage Migration Inhibitory Factor Y95f Mutant
pdb|1MFF|B Chain B, Macrophage Migration Inhibitory Factor Y95f Mutant
pdb|1MFF|C Chain C, Macrophage Migration Inhibitory Factor Y95f Mutant
Length = 114
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 41 VPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVAR 93
VPEG L + QQL + +G P +A P + + DP L ++++ +
Sbjct: 14 VPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTNDPCALCSLHSIGK 66
>pdb|1MFI|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor Complexed With (E)-2-Fluoro-P-Hydroxycinnamate
pdb|1MFI|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor Complexed With (E)-2-Fluoro-P-Hydroxycinnamate
pdb|1MFI|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor Complexed With (E)-2-Fluoro-P-Hydroxycinnamate
pdb|2GDG|A Chain A, Crystal Structure Of Covalently Modified Macrophage
Inhibitory Factor
pdb|2GDG|B Chain B, Crystal Structure Of Covalently Modified Macrophage
Inhibitory Factor
pdb|2GDG|C Chain C, Crystal Structure Of Covalently Modified Macrophage
Inhibitory Factor
Length = 114
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 41 VPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVAR 93
VPEG L + QQL + +G P +A P + + DP L ++++ +
Sbjct: 14 VPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTNDPCALCSLHSIGK 66
>pdb|3TNJ|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea With Amp Bound
Length = 150
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 103 IFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRL 137
+ WG+PRE+I ++ + +V+G+ G L L
Sbjct: 92 LVWGEPREEIIRIAEQENVDLIVVGSHGRHGLALL 126
>pdb|2PFS|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea
Length = 150
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 103 IFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRL 137
+ WG+PRE+I ++ + +V+G+ G L L
Sbjct: 92 LVWGEPREEIIRIAEQENVDLIVVGSHGRHGLALL 126
>pdb|2BR3|A Chain A, Cmci-D160 Mg
pdb|2BR3|B Chain B, Cmci-D160 Mg
pdb|2BR3|C Chain C, Cmci-D160 Mg
pdb|2BR3|D Chain D, Cmci-D160 Mg
pdb|2BR3|E Chain E, Cmci-D160 Mg
pdb|2BR3|F Chain F, Cmci-D160 Mg
pdb|2BR4|A Chain A, Cmci-D160 Mg-Sam
pdb|2BR4|B Chain B, Cmci-D160 Mg-Sam
pdb|2BR4|C Chain C, Cmci-D160 Mg-Sam
pdb|2BR4|D Chain D, Cmci-D160 Mg-Sam
pdb|2BR4|E Chain E, Cmci-D160 Mg-Sam
pdb|2BR4|F Chain F, Cmci-D160 Mg-Sam
Length = 236
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 12 DFSACSKKALQWAADNVVRNGDHLILVTVVP 42
D A + ++WA D+++ GD+ I+ ++P
Sbjct: 160 DAHANTFNIMKWAVDHLLEEGDYFIIEDMIP 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,756,590
Number of Sequences: 62578
Number of extensions: 192989
Number of successful extensions: 464
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 18
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)