BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032042
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
GN=At3g01520 PE=1 SV=2
Length = 175
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 14 SACSKKALQWAADNVVRNGDH-----LILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFS 68
S K+A +W + +VR+ L+ V VV E G ++D S +F
Sbjct: 24 SISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDG--------FDDVDSIYASPEDFR 75
Query: 69 EPTIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128
+ M++ L+ + + I GDP++ IC+ + ++ LV+G+
Sbjct: 76 D---MRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGS 132
Query: 129 RGLGKLKRL 137
RGLG+ +++
Sbjct: 133 RGLGRFQKV 141
>sp|P50089|YG51_YEAST Uncharacterized protein YGR237C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YGR237C PE=1 SV=1
Length = 785
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 20 ALQWAADNVVRNGDHLILVTVVPE 43
++ W +N+ RNGDHL+++T +PE
Sbjct: 352 SVDWYVENLTRNGDHLVIITTIPE 375
>sp|O07552|NHAX_BACSU Stress response protein NhaX OS=Bacillus subtilis (strain 168)
GN=nhaX PE=2 SV=2
Length = 166
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 60/154 (38%), Gaps = 32/154 (20%)
Query: 6 RVGVAVDFSACSKKALQWAAD---------NVVRNGDHLILVTVVP-----------EGG 45
R+ VA D S SKKAL A D V + D TV+ GG
Sbjct: 6 RIIVAFDGSENSKKALLTAIDLAKTVNAAITVAHSHDMKDNQTVIDPPRPAAEASYISGG 65
Query: 46 LEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFW 105
+ L D SP EP I + + E ++N ++Q + I
Sbjct: 66 MTSVPDPLISDVTSP--------EPMIYEDRTEEVIAEARMMLN----EQQADGDIDILE 113
Query: 106 GDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDF 139
GDP E I E ++I +V G+R +LK+L F
Sbjct: 114 GDPAESIIEHANRISADMIVTGSRDQNRLKKLIF 147
>sp|Q54JM9|NIT2_DICDI Nitrilase homolog 2 OS=Dictyostelium discoideum GN=nit2 PE=3 SV=1
Length = 328
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 57 SGSPLIPLAE-FSEP---TIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKI 112
+G+ LI L E F+ P + +KY D ET+ ++ A++ QI +V G +I
Sbjct: 83 NGAKLISLPECFNSPYSTSTFEKYSETEDGETVKKLSEAAKRNQIFLV-----GGSIPEI 137
Query: 113 CEAIDKIPLSCLVIGNRG--LGKLKRLDFINIEL 144
+A KI +C + ++G + K +++ +I++
Sbjct: 138 DKATGKIYNTCFIFNDKGEVVKKHRKIHLFDIDV 171
>sp|P87132|YFK5_SCHPO Uncharacterized protein C167.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC167.05 PE=1 SV=2
Length = 601
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 9 VAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41
+ +D S+ S A +WA ++RNGD LI+V V+
Sbjct: 435 LTLDLSSESLHAAEWAVGILLRNGDTLIIVDVI 467
>sp|A0Q5M6|GPMI_FRATN 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Francisella tularensis subsp. novicida (strain U112)
GN=gpmI PE=3 SV=1
Length = 512
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 19 KALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWE 55
KA+ A DNV++N +L L+ ++ GG+ E+ ++E
Sbjct: 94 KAIGAAIDNVIKNDSNLHLIGLLSPGGVHSHEEHIFE 130
>sp|Q8S8S7|PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana
GN=PUB34 PE=3 SV=1
Length = 801
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 15 ACSKKALQWAADNVVRNGDHLILVTVVP 42
A S++A++WA DN++ D +++ V+P
Sbjct: 39 AGSRRAVRWAVDNLLPKADKFVMIHVIP 66
>sp|Q0BKX8|GPMI_FRATO 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Francisella tularensis subsp. holarctica (strain
OSU18) GN=gpmI PE=3 SV=1
Length = 516
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 19 KALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWE 55
KA+ A DNV++N +L L+ ++ GG+ E+ ++E
Sbjct: 98 KAICAAIDNVIKNDSNLHLIGLLSPGGVHSHEEHIFE 134
>sp|Q2A2B1|GPMI_FRATH 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Francisella tularensis subsp. holarctica (strain LVS)
GN=gpmI PE=3 SV=1
Length = 512
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 19 KALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWE 55
KA+ A DNV++N +L L+ ++ GG+ E+ ++E
Sbjct: 94 KAICAAIDNVIKNDSNLHLIGLLSPGGVHSHEEHIFE 130
>sp|A7NDJ7|GPMI_FRATF 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Francisella tularensis subsp. holarctica (strain
FTNF002-00 / FTA) GN=gpmI PE=3 SV=1
Length = 512
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 19 KALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWE 55
KA+ A DNV++N +L L+ ++ GG+ E+ ++E
Sbjct: 94 KAICAAIDNVIKNDSNLHLIGLLSPGGVHSHEEHIFE 130
>sp|A4IZ68|GPMI_FRATW 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Francisella tularensis subsp. tularensis (strain
WY96-3418) GN=gpmI PE=3 SV=1
Length = 512
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 19 KALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWE 55
KA+ A DNV++N +L L+ ++ GG+ E+ ++E
Sbjct: 94 KAICAAIDNVIKNDSNLHLIGLLSPGGVHSHEEHIFE 130
>sp|Q5FS37|Y1038_GLUOX Maf-like protein GOX1038 OS=Gluconobacter oxydans (strain 621H)
GN=GOX1038 PE=3 SV=1
Length = 203
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 29 VRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIV 88
+R H++ VV L KG +++WE SP + + +FS+ +K Y + P L V
Sbjct: 106 LRGRTHVLRTAVV----LYKGGEKVWEHLASPRLTMRDFSDD-FLKAYLEREGPAILSCV 160
Query: 89 NT 90
Sbjct: 161 GA 162
>sp|A4HVP7|PURA_LEIIN Adenylosuccinate synthetase OS=Leishmania infantum GN=LinJ13.1120
PE=3 SV=1
Length = 710
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 61 LIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDP-REKICEAIDKI 119
L PLAE EP +K+Y + D + + +++V F+GD + K +A+
Sbjct: 138 LRPLAELQEPRRVKEYA---ETSLKDSLYRIIEAHDVIMVAGAFFGDEGKGKTVDAVAHH 194
Query: 120 PL-SCLVIGNRG 130
PL +C+ N G
Sbjct: 195 PLCTCIARVNSG 206
>sp|A7LBL2|PURA_LEIDO Adenylosuccinate synthetase OS=Leishmania donovani GN=ADSS PE=3
SV=1
Length = 710
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 61 LIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDP-REKICEAIDKI 119
L PLAE EP +K+Y + D + + +++V F+GD + K +A+
Sbjct: 138 LRPLAELQEPRRVKEYA---ETSLKDSLYRIIEAHDVIMVAGAFFGDEGKGKTVDAVAHH 194
Query: 120 PL-SCLVIGNRG 130
PL +C+ N G
Sbjct: 195 PLCTCIARVNSG 206
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.141 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,969,380
Number of Sequences: 539616
Number of extensions: 2483306
Number of successful extensions: 5002
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 4991
Number of HSP's gapped (non-prelim): 28
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)