Query 032042
Match_columns 148
No_of_seqs 125 out of 1034
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 14:07:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 1.5E-26 5.2E-31 147.1 8.5 131 2-147 3-135 (146)
2 1mjh_A Protein (ATP-binding do 99.9 8.5E-26 2.9E-30 146.1 10.6 136 3-147 4-147 (162)
3 3hgm_A Universal stress protei 99.9 1.2E-26 4E-31 147.7 5.1 133 4-147 2-137 (147)
4 2dum_A Hypothetical protein PH 99.9 7E-26 2.4E-30 147.6 8.6 140 1-147 2-144 (170)
5 3fg9_A Protein of universal st 99.9 1.4E-25 4.6E-30 144.4 9.4 129 1-147 12-145 (156)
6 3tnj_A Universal stress protei 99.9 3.5E-25 1.2E-29 141.5 10.8 132 1-147 3-135 (150)
7 1tq8_A Hypothetical protein RV 99.9 5.5E-25 1.9E-29 142.7 10.1 129 2-147 15-146 (163)
8 3dlo_A Universal stress protei 99.9 2E-25 6.9E-30 143.7 7.5 120 2-147 22-144 (155)
9 3idf_A USP-like protein; unive 99.9 7.2E-25 2.5E-29 138.2 9.2 125 4-147 1-127 (138)
10 2z08_A Universal stress protei 99.9 1.2E-24 4E-29 137.2 6.6 124 4-147 2-126 (137)
11 2gm3_A Unknown protein; AT3G01 99.9 4.9E-24 1.7E-28 139.5 7.3 136 3-147 4-151 (175)
12 3olq_A Universal stress protei 99.9 1.6E-23 5.5E-28 148.5 7.2 134 1-147 4-138 (319)
13 3fdx_A Putative filament prote 99.9 2.7E-23 9.4E-28 131.6 5.0 126 5-147 2-132 (143)
14 1jmv_A USPA, universal stress 99.9 1E-21 3.5E-26 124.1 10.0 125 4-148 2-127 (141)
15 3loq_A Universal stress protei 99.9 5.9E-23 2E-27 144.3 4.4 130 1-147 19-150 (294)
16 3mt0_A Uncharacterized protein 99.9 2E-21 6.7E-26 136.4 9.1 112 1-147 4-116 (290)
17 3cis_A Uncharacterized protein 99.8 5.1E-21 1.8E-25 135.3 8.9 128 2-147 17-149 (309)
18 3mt0_A Uncharacterized protein 99.8 6.3E-21 2.1E-25 133.8 7.1 124 3-147 133-264 (290)
19 3ab8_A Putative uncharacterize 99.8 3.7E-21 1.3E-25 133.4 3.5 135 5-147 1-137 (268)
20 3loq_A Universal stress protei 99.8 8.1E-20 2.8E-24 128.3 9.7 110 3-147 169-278 (294)
21 1q77_A Hypothetical protein AQ 99.8 4.9E-20 1.7E-24 115.9 7.6 121 3-147 3-127 (138)
22 3cis_A Uncharacterized protein 99.8 7.3E-19 2.5E-23 124.2 11.4 123 3-147 170-294 (309)
23 3olq_A Universal stress protei 99.8 7.3E-20 2.5E-24 129.7 6.2 129 3-147 155-293 (319)
24 3ab8_A Putative uncharacterize 99.7 1.4E-17 4.7E-22 115.4 7.0 105 3-147 153-257 (268)
25 1wy5_A TILS, hypothetical UPF0 95.5 0.16 5.3E-06 35.8 9.3 95 4-131 24-136 (317)
26 3kcq_A Phosphoribosylglycinami 95.5 0.16 5.6E-06 33.8 8.8 88 1-130 5-92 (215)
27 3a2k_A TRNA(Ile)-lysidine synt 95.3 0.12 4.1E-06 38.4 8.7 96 4-131 18-130 (464)
28 2iel_A Hypothetical protein TT 94.8 0.3 1E-05 30.0 7.7 110 5-138 2-115 (138)
29 1zun_A Sulfate adenylyltransfe 94.4 0.31 1.1E-05 34.5 8.4 95 4-133 46-159 (325)
30 1o97_C Electron transferring f 94.1 0.072 2.5E-06 36.6 4.5 81 12-132 34-124 (264)
31 4ds3_A Phosphoribosylglycinami 94.0 0.71 2.4E-05 30.6 9.1 85 4-130 7-96 (209)
32 3p9x_A Phosphoribosylglycinami 93.7 0.81 2.8E-05 30.3 8.9 84 5-130 3-91 (211)
33 1efp_B ETF, protein (electron 93.2 0.13 4.5E-06 35.1 4.6 79 13-132 35-125 (252)
34 1efv_B Electron transfer flavo 92.9 0.17 5.9E-06 34.6 4.8 78 14-132 39-128 (255)
35 2nz2_A Argininosuccinate synth 92.7 1.5 5.1E-05 32.1 9.8 39 1-43 2-40 (413)
36 1k92_A Argininosuccinate synth 92.6 2.4 8.1E-05 31.5 11.0 38 2-43 8-45 (455)
37 1meo_A Phosophoribosylglycinam 92.3 1.6 5.4E-05 28.8 9.2 84 5-130 1-89 (209)
38 3ih5_A Electron transfer flavo 92.2 1.7 5.7E-05 28.9 8.8 87 4-131 3-102 (217)
39 3da8_A Probable 5'-phosphoribo 91.8 1.9 6.5E-05 28.6 8.8 83 4-130 12-99 (215)
40 1ni5_A Putative cell cycle pro 91.1 1.7 5.9E-05 31.9 8.7 40 4-43 13-53 (433)
41 4grd_A N5-CAIR mutase, phospho 91.1 0.6 2.1E-05 29.8 5.3 61 83-143 26-90 (173)
42 4b4k_A N5-carboxyaminoimidazol 90.6 0.9 3.1E-05 29.2 5.8 62 82-143 35-100 (181)
43 3n0v_A Formyltetrahydrofolate 90.6 3.1 0.00011 28.8 9.7 40 91-130 133-176 (286)
44 2xry_A Deoxyribodipyrimidine p 90.5 0.37 1.3E-05 36.0 4.7 86 16-128 50-135 (482)
45 3o1l_A Formyltetrahydrofolate 90.2 3.5 0.00012 28.9 9.8 40 91-130 148-191 (302)
46 1sur_A PAPS reductase; assimil 89.8 2.9 9.9E-05 27.3 9.6 89 5-132 45-159 (215)
47 2ywx_A Phosphoribosylaminoimid 89.7 1.2 4E-05 28.1 5.7 62 83-144 13-75 (157)
48 3lou_A Formyltetrahydrofolate 89.7 3.8 0.00013 28.5 9.5 83 4-130 95-181 (292)
49 3oow_A Phosphoribosylaminoimid 89.3 1.2 4E-05 28.4 5.5 62 83-144 19-84 (166)
50 3tqr_A Phosphoribosylglycinami 89.3 3.4 0.00012 27.4 8.9 84 4-130 5-93 (215)
51 1xmp_A PURE, phosphoribosylami 89.0 1.4 4.6E-05 28.1 5.7 62 83-144 25-90 (170)
52 3kuu_A Phosphoribosylaminoimid 88.8 1.3 4.3E-05 28.4 5.5 62 83-144 26-91 (174)
53 3k32_A Uncharacterized protein 88.4 3.7 0.00013 26.7 8.7 39 1-43 3-41 (203)
54 3trh_A Phosphoribosylaminoimid 88.3 1.1 3.8E-05 28.5 5.0 62 83-144 20-85 (169)
55 2ywr_A Phosphoribosylglycinami 88.2 4.1 0.00014 26.9 8.6 42 89-130 44-90 (216)
56 3g40_A Na-K-CL cotransporter; 88.2 5 0.00017 27.9 10.9 93 6-131 22-120 (294)
57 1jkx_A GART;, phosphoribosylgl 88.0 4.2 0.00014 26.8 9.6 42 89-130 43-89 (212)
58 3zqu_A Probable aromatic acid 87.5 1.1 3.7E-05 29.7 4.8 41 1-42 1-41 (209)
59 2oq2_A Phosphoadenosine phosph 87.4 5.1 0.00018 27.2 8.7 38 4-42 41-78 (261)
60 3umv_A Deoxyribodipyrimidine p 87.4 0.76 2.6E-05 34.6 4.5 85 16-126 51-135 (506)
61 3ors_A N5-carboxyaminoimidazol 87.1 0.84 2.9E-05 28.9 3.9 61 83-143 17-81 (163)
62 3lp6_A Phosphoribosylaminoimid 87.0 0.89 3E-05 29.1 4.0 61 83-143 21-85 (174)
63 1u11_A PURE (N5-carboxyaminoim 86.9 1.7 5.9E-05 28.0 5.3 61 83-143 35-99 (182)
64 2wsi_A FAD synthetase; transfe 86.9 6.1 0.00021 27.6 8.7 96 5-135 54-172 (306)
65 3obi_A Formyltetrahydrofolate 86.8 3.2 0.00011 28.8 7.1 39 92-130 134-176 (288)
66 3rg8_A Phosphoribosylaminoimid 86.6 1.9 6.4E-05 27.2 5.3 61 83-143 16-81 (159)
67 1o4v_A Phosphoribosylaminoimid 86.6 0.99 3.4E-05 29.1 4.0 61 83-143 27-91 (183)
68 3q0i_A Methionyl-tRNA formyltr 86.4 4.6 0.00016 28.5 7.8 40 88-130 55-95 (318)
69 3auf_A Glycinamide ribonucleot 86.3 5.7 0.00019 26.6 8.9 42 89-130 65-111 (229)
70 2l69_A Rossmann 2X3 fold prote 85.2 1.4 4.7E-05 25.1 3.8 46 82-127 12-57 (134)
71 2wq7_A RE11660P; lyase-DNA com 84.5 3.1 0.00011 31.5 6.6 98 6-127 30-131 (543)
72 3fni_A Putative diflavin flavo 84.1 3.1 0.00011 25.9 5.6 49 82-132 19-68 (159)
73 1g63_A Epidermin modifying enz 83.6 1.4 4.9E-05 28.4 3.9 39 1-42 1-39 (181)
74 3hly_A Flavodoxin-like domain; 83.4 3.8 0.00013 25.5 5.8 49 82-132 15-63 (161)
75 3av3_A Phosphoribosylglycinami 82.0 8.7 0.0003 25.3 8.4 43 88-130 45-92 (212)
76 3nrb_A Formyltetrahydrofolate 81.7 5.8 0.0002 27.5 6.6 21 110-130 155-175 (287)
77 3bl5_A Queuosine biosynthesis 81.7 8.4 0.00029 24.9 10.5 37 3-43 2-38 (219)
78 1np7_A DNA photolyase; protein 81.0 7.5 0.00026 29.0 7.4 103 2-127 3-107 (489)
79 3qjg_A Epidermin biosynthesis 80.7 2.9 9.8E-05 26.8 4.5 35 5-40 6-40 (175)
80 2ywb_A GMP synthase [glutamine 80.6 16 0.00054 27.4 10.1 34 5-42 210-243 (503)
81 1kor_A Argininosuccinate synth 79.1 16 0.00055 26.6 9.9 35 5-42 1-35 (400)
82 2c5s_A THII, probable thiamine 78.1 17 0.0006 26.4 9.1 35 4-42 187-221 (413)
83 3kbq_A Protein TA0487; structu 77.5 11 0.00038 24.0 6.4 50 82-132 22-73 (172)
84 1y5e_A Molybdenum cofactor bio 76.7 11 0.00037 23.7 6.3 45 82-126 30-78 (169)
85 1ccw_A Protein (glutamate muta 76.7 7.3 0.00025 23.6 5.3 45 85-130 20-64 (137)
86 1p3y_1 MRSD protein; flavoprot 76.3 3.2 0.00011 27.0 3.7 38 2-40 6-43 (194)
87 2hma_A Probable tRNA (5-methyl 76.0 19 0.00066 25.9 9.0 36 4-43 9-44 (376)
88 3tqi_A GMP synthase [glutamine 75.0 9.1 0.00031 28.9 6.4 35 5-42 231-265 (527)
89 2is8_A Molybdopterin biosynthe 75.0 11 0.00039 23.5 6.0 44 83-126 21-68 (164)
90 3iwt_A 178AA long hypothetical 74.1 14 0.00048 23.3 7.1 44 83-126 40-87 (178)
91 2l69_A Rossmann 2X3 fold prote 73.9 10 0.00034 21.6 6.4 38 81-118 86-123 (134)
92 2ejb_A Probable aromatic acid 73.8 6.7 0.00023 25.4 4.8 35 5-40 2-36 (189)
93 2o8v_A Phosphoadenosine phosph 73.2 18 0.00062 24.3 9.0 34 5-42 46-79 (252)
94 3fy4_A 6-4 photolyase; DNA rep 72.5 4.5 0.00015 30.7 4.2 108 1-127 1-110 (537)
95 2amj_A Modulator of drug activ 72.2 14 0.0005 23.8 6.2 49 82-132 33-82 (204)
96 3g40_A Na-K-CL cotransporter; 71.9 2.4 8.2E-05 29.5 2.4 82 16-134 177-258 (294)
97 3tvs_A Cryptochrome-1; circadi 71.1 2.9 0.0001 31.7 2.9 87 16-127 17-106 (538)
98 2yxb_A Coenzyme B12-dependent 71.1 9.5 0.00033 23.8 4.9 45 85-130 35-79 (161)
99 2ohh_A Type A flavoprotein FPR 70.7 26 0.00088 24.9 8.5 49 82-132 271-319 (404)
100 1owl_A Photolyase, deoxyribodi 70.2 6 0.0002 29.5 4.4 88 12-127 12-99 (484)
101 3rjz_A N-type ATP pyrophosphat 70.1 22 0.00075 23.9 10.7 97 1-130 1-100 (237)
102 2g2c_A Putative molybdenum cof 70.0 17 0.00059 22.7 6.2 44 83-126 25-75 (167)
103 1sbz_A Probable aromatic acid 69.3 9.2 0.00031 24.9 4.7 36 5-40 1-36 (197)
104 1vl2_A Argininosuccinate synth 69.1 32 0.0011 25.3 9.7 35 4-42 14-48 (421)
105 2dpl_A GMP synthetase, GMP syn 68.4 27 0.00092 24.3 7.9 35 5-42 21-55 (308)
106 3rfq_A Pterin-4-alpha-carbinol 67.3 22 0.00075 22.9 6.3 45 82-126 48-95 (185)
107 1mkz_A Molybdenum cofactor bio 67.3 21 0.00071 22.5 6.5 44 83-126 28-75 (172)
108 3qi7_A Putative transcriptiona 66.6 34 0.0012 24.7 8.0 93 6-129 14-120 (371)
109 2q62_A ARSH; alpha/beta, flavo 66.6 16 0.00054 24.6 5.6 49 82-132 51-110 (247)
110 2h31_A Multifunctional protein 65.8 7.6 0.00026 28.6 4.0 63 83-145 279-346 (425)
111 1jq5_A Glycerol dehydrogenase; 65.1 19 0.00066 25.6 6.1 43 85-127 47-94 (370)
112 1efv_A Electron transfer flavo 65.0 24 0.00084 24.7 6.4 22 109-130 75-96 (315)
113 2bw0_A 10-FTHFDH, 10-formyltet 64.9 34 0.0012 24.1 8.5 42 89-130 65-109 (329)
114 1y80_A Predicted cobalamin bin 63.5 16 0.00055 23.7 5.0 44 86-130 106-149 (210)
115 1e5d_A Rubredoxin\:oxygen oxid 62.8 38 0.0013 24.0 8.8 49 82-132 267-315 (402)
116 3pzy_A MOG; ssgcid, seattle st 62.7 14 0.00049 23.1 4.5 44 82-126 26-72 (164)
117 1wpw_A 3-isopropylmalate dehyd 61.2 38 0.0013 24.1 6.8 28 15-42 144-171 (336)
118 1tqx_A D-ribulose-5-phosphate 61.1 24 0.00082 23.4 5.6 58 85-142 100-160 (227)
119 1iv0_A Hypothetical protein; r 59.6 8.2 0.00028 22.1 2.7 22 108-129 39-60 (98)
120 2i2x_B MTAC, methyltransferase 58.8 29 0.00098 23.4 5.8 45 85-130 140-184 (258)
121 2pbq_A Molybdenum cofactor bio 58.7 32 0.0011 21.8 6.0 43 83-126 25-74 (178)
122 3mcu_A Dipicolinate synthase, 58.6 12 0.00042 24.6 3.7 40 2-42 3-43 (207)
123 4f3r_A Phosphopantetheine aden 58.5 31 0.0011 21.6 9.4 22 111-132 75-96 (162)
124 3rpe_A MDAB, modulator of drug 58.4 33 0.0011 22.6 5.9 49 82-132 46-95 (218)
125 1qzu_A Hypothetical protein MD 58.2 15 0.00051 24.1 4.1 39 4-42 19-57 (206)
126 2j07_A Deoxyribodipyrimidine p 57.9 29 0.00098 25.3 6.0 84 12-127 11-94 (420)
127 1xw8_A UPF0271 protein YBGL; N 57.4 42 0.0014 22.8 6.5 107 6-130 25-141 (252)
128 1ydg_A Trp repressor binding p 57.3 17 0.00058 23.3 4.4 49 82-132 21-90 (211)
129 3inp_A D-ribulose-phosphate 3- 57.1 12 0.00042 25.3 3.6 53 85-139 123-175 (246)
130 1jlj_A Gephyrin; globular alph 56.9 36 0.0012 21.8 6.3 44 83-126 34-84 (189)
131 3ctl_A D-allulose-6-phosphate 56.7 15 0.00051 24.5 4.0 54 84-139 94-147 (231)
132 3ezx_A MMCP 1, monomethylamine 56.3 25 0.00086 23.1 5.0 40 86-126 110-149 (215)
133 2pjk_A 178AA long hypothetical 55.9 36 0.0012 21.6 6.5 46 81-126 38-87 (178)
134 3ayv_A Putative uncharacterize 55.3 21 0.00072 23.5 4.6 23 18-40 75-97 (254)
135 2pg3_A Queuosine biosynthesis 54.8 42 0.0014 21.9 11.3 34 5-42 3-36 (232)
136 2q9u_A A-type flavoprotein; fl 54.1 41 0.0014 24.0 6.3 49 82-132 271-319 (414)
137 3gxq_A Putative regulator of t 54.1 14 0.00049 17.6 2.5 25 99-123 12-37 (54)
138 1uuy_A CNX1, molybdopterin bio 53.9 37 0.0013 21.1 6.2 31 96-126 43-77 (167)
139 2zki_A 199AA long hypothetical 53.6 18 0.00061 22.9 3.9 43 1-43 1-43 (199)
140 3tqq_A Methionyl-tRNA formyltr 52.7 56 0.0019 22.8 8.1 41 87-130 49-90 (314)
141 3s40_A Diacylglycerol kinase; 52.6 45 0.0015 23.0 6.1 43 83-126 26-69 (304)
142 3en0_A Cyanophycinase; serine 52.5 32 0.0011 23.8 5.2 32 6-37 27-61 (291)
143 2fzv_A Putative arsenical resi 52.2 33 0.0011 23.6 5.2 49 82-132 75-135 (279)
144 2dfa_A Hypothetical UPF0271 pr 51.6 54 0.0018 22.3 6.4 109 4-130 28-146 (250)
145 1v6t_A Hypothetical UPF0271 pr 51.2 55 0.0019 22.3 9.2 109 4-130 28-146 (255)
146 1ycg_A Nitric oxide reductase; 50.8 63 0.0022 22.8 8.4 49 82-132 266-314 (398)
147 1sqs_A Conserved hypothetical 50.6 40 0.0014 22.2 5.4 22 109-132 70-91 (242)
148 3inp_A D-ribulose-phosphate 3- 50.5 24 0.00083 23.8 4.3 44 85-129 182-225 (246)
149 3u7q_B Nitrogenase molybdenum- 50.4 55 0.0019 24.7 6.6 28 103-130 421-448 (523)
150 1x92_A APC5045, phosphoheptose 49.9 19 0.00065 22.9 3.6 40 3-43 112-151 (199)
151 2der_A TRNA-specific 2-thiouri 49.7 70 0.0024 23.0 8.4 35 4-42 17-51 (380)
152 1dd9_A DNA primase, DNAG; topr 49.1 39 0.0013 23.9 5.3 34 5-38 207-243 (338)
153 4edg_A DNA primase; catalytic 49.0 17 0.00057 25.8 3.4 34 5-38 196-229 (329)
154 2qv7_A Diacylglycerol kinase D 48.7 56 0.0019 22.8 6.1 44 83-126 42-86 (337)
155 1dnp_A DNA photolyase; DNA rep 48.1 24 0.00084 26.2 4.3 87 16-127 14-102 (471)
156 3lvu_A ABC transporter, peripl 48.0 56 0.0019 21.5 5.9 45 83-130 143-187 (258)
157 3lqk_A Dipicolinate synthase s 47.6 23 0.0008 23.1 3.7 38 3-41 6-44 (201)
158 3p0r_A Azoreductase; structura 47.1 19 0.00064 23.4 3.3 38 5-43 5-50 (211)
159 2au3_A DNA primase; zinc ribbo 46.6 28 0.00097 25.2 4.4 34 5-38 288-321 (407)
160 2vzf_A NADH-dependent FMN redu 46.5 26 0.0009 22.3 3.9 40 1-42 1-44 (197)
161 3ovp_A Ribulose-phosphate 3-ep 46.4 34 0.0012 22.7 4.5 46 86-133 102-147 (228)
162 2yvq_A Carbamoyl-phosphate syn 46.2 16 0.00054 22.3 2.6 42 89-130 60-106 (143)
163 1qgu_B Protein (nitrogenase mo 46.1 93 0.0032 23.4 7.6 29 102-130 416-444 (519)
164 5nul_A Flavodoxin; electron tr 46.0 35 0.0012 20.0 4.2 44 82-131 13-56 (138)
165 1nu0_A Hypothetical protein YQ 45.9 17 0.0006 22.1 2.8 22 108-129 41-62 (138)
166 1mvl_A PPC decarboxylase athal 45.6 31 0.0011 22.6 4.1 37 4-42 19-55 (209)
167 3ctl_A D-allulose-6-phosphate 45.4 38 0.0013 22.5 4.6 44 85-129 154-198 (231)
168 2ark_A Flavodoxin; FMN, struct 45.4 54 0.0019 20.5 5.4 45 82-132 19-64 (188)
169 1wdn_A GLNBP, glutamine bindin 45.2 53 0.0018 20.4 5.4 39 86-127 30-68 (226)
170 3grc_A Sensor protein, kinase; 45.2 42 0.0015 19.2 5.8 43 83-129 17-59 (140)
171 2fyw_A Conserved hypothetical 45.1 18 0.00062 24.6 3.0 28 99-126 38-65 (267)
172 1tk9_A Phosphoheptose isomeras 44.7 31 0.0011 21.5 4.0 42 3-45 109-150 (188)
173 1di6_A MOGA, molybdenum cofact 44.2 54 0.0018 21.2 5.1 43 84-126 24-72 (195)
174 2j4d_A Cryptochrome 3, cryptoc 43.9 44 0.0015 25.2 5.2 94 12-127 49-142 (525)
175 3flk_A Tartrate dehydrogenase/ 43.5 87 0.003 22.5 6.4 28 15-42 166-194 (364)
176 1x0l_A Homoisocitrate dehydrog 43.1 87 0.003 22.2 6.9 28 15-42 144-172 (333)
177 3g3k_A Glutamate receptor, ion 42.9 31 0.0011 22.4 3.9 42 85-126 37-88 (259)
178 3o6p_A Peptide ABC transporter 42.8 65 0.0022 20.7 6.4 46 82-130 112-159 (229)
179 1req_A Methylmalonyl-COA mutas 42.8 43 0.0015 26.6 5.0 43 87-130 615-657 (727)
180 1b93_A Protein (methylglyoxal 42.6 32 0.0011 21.4 3.6 35 95-129 56-91 (152)
181 4f3p_A Glutamine-binding perip 42.3 63 0.0022 20.7 5.4 40 85-127 50-89 (249)
182 2xij_A Methylmalonyl-COA mutas 42.1 53 0.0018 26.2 5.5 43 87-130 623-665 (762)
183 1e2b_A Enzyme IIB-cellobiose; 42.0 48 0.0016 19.0 4.2 39 4-42 3-41 (106)
184 3nbm_A PTS system, lactose-spe 42.0 30 0.001 20.0 3.3 43 85-133 23-66 (108)
185 2lpm_A Two-component response 41.8 45 0.0015 19.6 4.1 13 114-126 47-59 (123)
186 3pam_A Transmembrane protein; 41.2 74 0.0025 20.9 6.4 45 83-130 142-186 (259)
187 4dad_A Putative pilus assembly 41.1 46 0.0016 19.3 4.2 46 82-130 30-77 (146)
188 1v95_A Nuclear receptor coacti 40.9 59 0.002 19.6 5.6 48 83-130 22-71 (130)
189 3f6p_A Transcriptional regulat 40.5 48 0.0016 18.5 5.7 42 85-130 15-56 (120)
190 2yva_A DNAA initiator-associat 40.5 34 0.0012 21.5 3.7 40 3-43 108-147 (196)
191 4dz1_A DALS D-alanine transpor 40.3 74 0.0025 20.6 5.5 39 86-127 57-95 (259)
192 3eod_A Protein HNR; response r 40.2 50 0.0017 18.6 5.6 43 83-129 18-60 (130)
193 3gt7_A Sensor protein; structu 40.1 57 0.0019 19.2 5.8 43 83-129 18-60 (154)
194 2xw6_A MGS, methylglyoxal synt 40.0 23 0.00079 21.5 2.6 38 92-129 44-83 (134)
195 3dm5_A SRP54, signal recogniti 40.0 1.1E+02 0.0038 22.6 9.2 47 88-134 147-196 (443)
196 3cu2_A Ribulose-5-phosphate 3- 39.8 58 0.002 21.8 4.8 44 86-130 175-220 (237)
197 2x5e_A UPF0271 protein PA4511; 39.4 88 0.003 21.2 6.9 107 5-129 35-151 (252)
198 1gtz_A 3-dehydroquinate dehydr 39.3 64 0.0022 20.2 4.5 54 75-130 27-82 (156)
199 1fmt_A Methionyl-tRNA FMet for 39.2 58 0.002 22.8 4.9 40 88-130 51-91 (314)
200 1nmo_A Hypothetical protein YB 39.0 20 0.00068 24.1 2.5 28 99-126 35-62 (247)
201 3gl9_A Response regulator; bet 38.9 52 0.0018 18.5 5.7 41 85-129 15-55 (122)
202 1u3d_A Cryptochrome 1 apoprote 38.4 78 0.0027 23.7 5.8 88 12-127 21-108 (509)
203 3nv7_A Phosphopantetheine aden 38.1 71 0.0024 19.8 8.2 22 111-132 73-94 (157)
204 1t6t_1 Putative protein; struc 38.1 31 0.0011 20.5 2.9 29 5-33 62-91 (118)
205 1nui_A DNA primase/helicase; z 38.1 33 0.0011 22.9 3.5 28 3-30 198-225 (255)
206 2xbl_A Phosphoheptose isomeras 37.8 43 0.0015 21.0 3.9 41 3-44 115-155 (198)
207 3i42_A Response regulator rece 37.8 54 0.0019 18.3 6.2 43 83-129 14-56 (127)
208 3m47_A Orotidine 5'-phosphate 37.7 87 0.003 20.6 5.6 34 4-42 12-45 (228)
209 1gqo_A Dehydroquinase; dehydra 37.6 62 0.0021 19.9 4.2 54 75-130 21-76 (143)
210 3qay_A Endolysin; amidase A/B 37.5 77 0.0026 20.0 5.4 44 83-126 33-83 (180)
211 1vhx_A Putative holliday junct 37.4 18 0.00061 22.4 1.9 23 107-129 42-64 (150)
212 3cg4_A Response regulator rece 37.4 58 0.002 18.6 5.7 15 114-128 45-59 (142)
213 3u0h_A Xylose isomerase domain 37.3 37 0.0013 22.5 3.7 77 19-121 84-171 (281)
214 1vbk_A Hypothetical protein PH 37.3 1E+02 0.0035 21.4 8.4 32 5-41 180-211 (307)
215 3trj_A Phosphoheptose isomeras 37.2 42 0.0014 21.5 3.8 42 3-45 113-154 (201)
216 2m1z_A LMO0427 protein; homolo 37.0 42 0.0014 19.5 3.3 40 86-131 23-68 (106)
217 3to5_A CHEY homolog; alpha(5)b 36.9 67 0.0023 19.1 4.8 45 83-130 23-67 (134)
218 3t6k_A Response regulator rece 36.9 60 0.0021 18.6 5.7 43 84-130 16-58 (136)
219 2yyb_A Hypothetical protein TT 36.9 18 0.0006 24.3 1.9 21 106-126 43-63 (242)
220 1ta9_A Glycerol dehydrogenase; 36.8 53 0.0018 24.3 4.6 43 84-127 106-153 (450)
221 3h5l_A Putative branched-chain 36.8 1.1E+02 0.0038 21.6 7.4 19 110-128 234-252 (419)
222 3sho_A Transcriptional regulat 36.7 47 0.0016 20.6 3.9 41 3-44 86-126 (187)
223 2qxy_A Response regulator; reg 36.3 62 0.0021 18.5 6.0 42 83-128 15-56 (142)
224 3kht_A Response regulator; PSI 36.2 63 0.0021 18.6 6.3 45 83-129 16-60 (144)
225 1m3s_A Hypothetical protein YC 36.1 48 0.0016 20.6 3.9 41 3-44 78-118 (186)
226 1h1y_A D-ribulose-5-phosphate 36.1 90 0.0031 20.4 5.7 45 87-132 104-150 (228)
227 1zgh_A Methionyl-tRNA formyltr 36.0 53 0.0018 22.4 4.2 24 107-130 64-87 (260)
228 2fz5_A Flavodoxin; alpha/beta 35.8 64 0.0022 18.6 5.1 44 82-131 14-57 (137)
229 1h05_A 3-dehydroquinate dehydr 35.7 63 0.0021 20.0 4.0 48 81-130 29-78 (146)
230 3cvo_A Methyltransferase-like 35.4 37 0.0013 22.1 3.2 49 81-129 60-131 (202)
231 3blx_A Isocitrate dehydrogenas 35.4 1.2E+02 0.0041 21.7 6.6 28 15-42 157-185 (349)
232 1f0k_A MURG, UDP-N-acetylgluco 35.3 72 0.0025 21.9 5.0 40 1-41 1-43 (364)
233 3kzg_A Arginine 3RD transport 35.2 69 0.0024 20.3 4.7 40 85-127 31-70 (237)
234 3qw3_A Orotidine-5-phosphate d 35.2 50 0.0017 22.4 4.0 37 4-40 13-50 (255)
235 3n8k_A 3-dehydroquinate dehydr 35.2 70 0.0024 20.3 4.3 54 75-130 49-104 (172)
236 4hqo_A Sporozoite surface prot 35.0 45 0.0015 22.3 3.8 38 5-42 127-164 (266)
237 2l2q_A PTS system, cellobiose- 35.0 65 0.0022 18.4 5.1 42 85-131 21-62 (109)
238 2gx8_A NIF3-related protein; s 35.0 31 0.0011 25.1 3.0 28 99-126 64-91 (397)
239 2gkg_A Response regulator homo 34.9 59 0.002 18.0 5.7 43 84-130 17-59 (127)
240 3m6m_D Sensory/regulatory prot 34.8 68 0.0023 18.6 5.5 43 83-129 25-67 (143)
241 3hv2_A Response regulator/HD d 34.8 70 0.0024 18.7 5.8 45 82-130 24-68 (153)
242 1xrs_B D-lysine 5,6-aminomutas 34.6 66 0.0023 21.9 4.5 25 106-130 166-190 (262)
243 3lwz_A 3-dehydroquinate dehydr 34.5 77 0.0026 19.8 4.3 53 76-130 29-83 (153)
244 2xgg_A Microneme protein 2; A/ 34.3 44 0.0015 20.6 3.4 38 5-42 124-161 (178)
245 2rc8_A Glutamate [NMDA] recept 34.1 51 0.0018 22.1 4.0 42 84-125 72-121 (294)
246 3sr7_A Isopentenyl-diphosphate 34.1 97 0.0033 22.2 5.5 50 83-132 193-242 (365)
247 3rxy_A NIF3 protein; structura 34.1 32 0.0011 23.7 2.8 28 99-126 38-65 (278)
248 2xhz_A KDSD, YRBH, arabinose 5 33.8 50 0.0017 20.4 3.7 40 4-44 96-135 (183)
249 2a5l_A Trp repressor binding p 33.8 52 0.0018 20.6 3.8 38 5-42 6-44 (200)
250 3lte_A Response regulator; str 33.8 65 0.0022 18.1 6.3 44 83-130 17-60 (132)
251 2bon_A Lipid kinase; DAG kinas 33.5 1.2E+02 0.004 21.2 5.8 42 85-126 46-88 (332)
252 2bln_A Protein YFBG; transfera 33.4 47 0.0016 23.1 3.7 41 88-130 45-85 (305)
253 1jeo_A MJ1247, hypothetical pr 33.4 52 0.0018 20.3 3.7 41 3-44 81-121 (180)
254 1rtt_A Conserved hypothetical 33.3 56 0.0019 20.5 3.9 41 1-42 3-46 (193)
255 4eq9_A ABC transporter substra 33.2 70 0.0024 20.2 4.4 40 85-127 34-74 (246)
256 2v3u_A Glutamate receptor delt 33.2 57 0.0019 21.1 4.0 42 85-126 34-84 (265)
257 3tql_A Arginine-binding protei 33.1 79 0.0027 19.6 4.6 40 85-127 29-68 (227)
258 1lst_A Lysine, arginine, ornit 33.0 68 0.0023 20.2 4.3 38 86-126 32-69 (239)
259 3kbr_A Cyclohexadienyl dehydra 32.9 61 0.0021 20.5 4.1 39 86-127 43-81 (239)
260 3kcn_A Adenylate cyclase homol 32.8 52 0.0018 19.3 3.5 25 1-26 1-25 (151)
261 3bul_A Methionine synthase; tr 32.7 79 0.0027 24.3 5.0 44 86-130 116-159 (579)
262 1o2d_A Alcohol dehydrogenase, 32.6 1.3E+02 0.0046 21.3 6.3 45 84-128 57-107 (371)
263 3i6v_A Periplasmic His/Glu/Gln 32.3 66 0.0023 20.4 4.2 40 85-127 32-71 (232)
264 2zay_A Response regulator rece 32.2 75 0.0026 18.3 6.0 41 86-130 22-62 (147)
265 4hqf_A Thrombospondin-related 32.2 62 0.0021 21.8 4.1 39 5-43 130-168 (281)
266 3hdv_A Response regulator; PSI 32.0 72 0.0025 18.1 5.3 8 121-128 53-60 (136)
267 2nyd_A UPF0135 protein SA1388; 31.9 29 0.00099 25.0 2.4 28 99-126 40-67 (370)
268 2uyg_A 3-dehydroquinate dehydr 31.9 89 0.0031 19.4 4.3 47 82-130 27-76 (149)
269 2qr3_A Two-component system re 31.9 73 0.0025 18.1 5.2 41 85-129 16-56 (140)
270 1uqr_A 3-dehydroquinate dehydr 31.8 66 0.0023 20.1 3.7 48 81-130 28-77 (154)
271 3hzh_A Chemotaxis response reg 31.7 81 0.0028 18.6 5.2 47 81-130 45-93 (157)
272 3hv1_A Polar amino acid ABC up 31.4 77 0.0026 20.6 4.5 38 85-125 48-85 (268)
273 3o1i_D Periplasmic protein TOR 31.2 1.2E+02 0.0039 20.1 6.0 50 83-132 22-75 (304)
274 1vim_A Hypothetical protein AF 31.2 44 0.0015 21.3 3.1 41 3-44 88-128 (200)
275 2hl0_A Threonyl-tRNA synthetas 31.2 44 0.0015 20.6 2.8 58 16-100 56-113 (143)
276 3vkj_A Isopentenyl-diphosphate 31.0 80 0.0027 22.6 4.6 48 84-131 175-222 (368)
277 2pju_A Propionate catabolism o 30.9 68 0.0023 21.2 4.0 45 85-129 118-163 (225)
278 3h5l_A Putative branched-chain 30.8 1.4E+02 0.0048 21.0 10.0 46 83-128 179-227 (419)
279 3fkq_A NTRC-like two-domain pr 30.6 1.4E+02 0.0049 21.0 6.0 47 82-130 31-78 (373)
280 1yae_A Glutamate receptor, ion 30.6 56 0.0019 22.1 3.7 41 85-125 46-96 (312)
281 3m9w_A D-xylose-binding peripl 30.4 1.2E+02 0.0042 20.2 6.0 51 82-132 18-70 (313)
282 2y7i_A STM4351; arginine-bindi 30.3 87 0.003 19.5 4.5 38 86-126 34-71 (229)
283 2iee_A ORF2, probable ABC tran 30.1 65 0.0022 21.1 3.9 39 86-127 52-90 (271)
284 1vmd_A MGS, methylglyoxal synt 29.8 46 0.0016 21.4 2.8 40 90-129 66-107 (178)
285 3tva_A Xylose isomerase domain 29.7 48 0.0016 22.2 3.2 77 16-120 99-175 (290)
286 3h5i_A Response regulator/sens 29.6 83 0.0028 18.0 6.3 42 85-129 18-59 (140)
287 1t5b_A Acyl carrier protein ph 29.6 1E+02 0.0036 19.1 5.8 20 111-132 79-98 (201)
288 3cvj_A Putative phosphoheptose 29.5 45 0.0015 21.9 3.0 38 4-42 108-145 (243)
289 3k4u_A Binding component of AB 29.5 84 0.0029 20.0 4.3 39 85-126 32-70 (245)
290 1xrs_A D-lysine 5,6-aminomutas 29.5 1.3E+02 0.0044 22.5 5.4 46 99-144 153-201 (516)
291 3u7r_A NADPH-dependent FMN red 29.4 74 0.0025 20.3 3.9 38 1-41 1-41 (190)
292 2i2w_A Phosphoheptose isomeras 29.3 41 0.0014 21.6 2.7 39 4-43 131-169 (212)
293 1qpo_A Quinolinate acid phosph 29.2 1.4E+02 0.0048 20.5 5.7 34 98-132 241-274 (284)
294 3b6i_A Flavoprotein WRBA; flav 29.1 1E+02 0.0035 19.1 4.6 37 6-42 3-41 (198)
295 3blx_B Isocitrate dehydrogenas 29.0 1.6E+02 0.0055 21.1 6.0 28 15-42 163-191 (354)
296 3lua_A Response regulator rece 28.9 85 0.0029 17.9 4.5 42 84-129 16-59 (140)
297 1tqj_A Ribulose-phosphate 3-ep 28.8 75 0.0026 20.9 4.0 45 86-132 102-146 (230)
298 1i60_A IOLI protein; beta barr 28.6 90 0.0031 20.5 4.4 79 17-120 82-165 (278)
299 3ty4_A Probable homoisocitrate 28.5 1.6E+02 0.0056 21.1 5.8 27 15-41 162-201 (366)
300 3cg0_A Response regulator rece 28.5 85 0.0029 17.8 6.2 45 83-130 20-64 (140)
301 3l8u_A SMU.1707C, putative rRN 28.2 1.1E+02 0.0038 19.4 4.5 35 97-131 16-53 (182)
302 3hdg_A Uncharacterized protein 28.0 87 0.003 17.7 5.4 41 85-129 20-60 (137)
303 3rqi_A Response regulator prot 27.8 1.1E+02 0.0037 18.7 5.7 43 83-129 18-60 (184)
304 3o6c_A PNP synthase, pyridoxin 27.8 1.4E+02 0.0048 20.4 5.0 42 82-126 110-151 (260)
305 3cnb_A DNA-binding response re 27.8 88 0.003 17.7 5.8 41 85-129 21-63 (143)
306 3gk0_A PNP synthase, pyridoxin 27.8 1.5E+02 0.005 20.5 5.1 42 82-126 141-182 (278)
307 1pb7_A N-methyl-D-aspartate re 27.7 68 0.0023 21.5 3.7 43 84-126 67-123 (292)
308 2j48_A Two-component sensor ki 27.6 78 0.0027 17.0 6.2 42 85-130 14-55 (119)
309 2avd_A Catechol-O-methyltransf 27.3 70 0.0024 20.4 3.6 48 82-129 104-154 (229)
310 3ou5_A Serine hydroxymethyltra 27.3 47 0.0016 25.0 2.9 25 109-133 192-216 (490)
311 1m5w_A Pyridoxal phosphate bio 27.3 1.5E+02 0.005 20.1 5.3 44 82-128 113-156 (243)
312 3del_B Arginine binding protei 27.2 99 0.0034 19.5 4.4 39 85-126 38-76 (242)
313 3n0r_A Response regulator; sig 27.2 1.5E+02 0.005 20.1 5.8 46 83-131 171-216 (286)
314 3a10_A Response regulator; pho 27.2 81 0.0028 17.1 5.7 15 114-128 39-53 (116)
315 4dik_A Flavoprotein; TM0755, e 27.2 1.8E+02 0.0061 21.1 6.6 49 82-132 280-331 (410)
316 3snk_A Response regulator CHEY 27.0 61 0.0021 18.4 3.0 43 83-129 25-68 (135)
317 2q5c_A NTRC family transcripti 27.0 1.3E+02 0.0043 19.3 7.9 36 94-129 115-151 (196)
318 2va1_A Uridylate kinase; UMPK, 26.7 1.2E+02 0.0039 20.3 4.7 39 1-41 21-71 (256)
319 2d1c_A Isocitrate dehydrogenas 26.7 2.1E+02 0.0071 21.6 6.6 28 15-42 165-193 (496)
320 1ii5_A SLR1257 protein; membra 26.6 1.2E+02 0.0041 18.8 5.4 39 87-127 34-72 (233)
321 1v7p_C Integrin alpha-2; snake 26.6 42 0.0014 21.2 2.4 36 5-40 110-145 (200)
322 3nhm_A Response regulator; pro 26.6 91 0.0031 17.5 4.8 25 1-26 1-25 (133)
323 3tpa_A Heme-binding protein A; 26.5 1.6E+02 0.0056 21.8 5.8 46 82-130 369-414 (521)
324 2a5s_A N-methyl-D-aspartate re 26.5 82 0.0028 21.0 3.9 42 85-126 62-111 (284)
325 3rot_A ABC sugar transporter, 26.4 1.4E+02 0.0049 19.8 5.2 49 83-131 20-72 (297)
326 1mqi_A Glutamate receptor 2; G 26.2 84 0.0029 20.3 3.9 41 86-126 38-88 (263)
327 3l6u_A ABC-type sugar transpor 26.1 1.4E+02 0.0049 19.6 6.1 48 83-130 25-74 (293)
328 1pt6_A Integrin alpha-1; cell 26.0 56 0.0019 20.8 2.9 36 5-40 111-146 (213)
329 1xhf_A DYE resistance, aerobic 26.0 89 0.0031 17.2 5.7 41 85-129 16-56 (123)
330 3dx5_A Uncharacterized protein 25.9 56 0.0019 21.8 3.0 80 16-120 81-163 (286)
331 3sm9_A Mglur3, metabotropic gl 25.9 2E+02 0.0067 21.1 10.2 38 4-41 185-222 (479)
332 3r6w_A FMN-dependent NADH-azor 25.8 1.3E+02 0.0045 19.1 5.8 20 111-132 80-99 (212)
333 1srr_A SPO0F, sporulation resp 25.8 91 0.0031 17.2 5.7 40 86-129 17-56 (124)
334 3l4e_A Uncharacterized peptida 25.7 1.4E+02 0.0047 19.3 4.7 44 83-128 44-87 (206)
335 3cfy_A Putative LUXO repressor 25.7 1E+02 0.0034 17.6 5.3 14 114-127 42-55 (137)
336 3lkb_A Probable branched-chain 25.5 1.7E+02 0.0059 20.3 7.6 19 109-127 211-229 (392)
337 3rfo_A Methionyl-tRNA formyltr 25.4 58 0.002 22.8 3.0 41 88-131 52-93 (317)
338 3etn_A Putative phosphosugar i 25.4 75 0.0026 20.6 3.5 41 3-44 105-147 (220)
339 1vdd_A Recombination protein R 25.4 1.2E+02 0.004 20.3 4.2 34 3-36 133-166 (228)
340 1u7z_A Coenzyme A biosynthesis 25.3 1.5E+02 0.0052 19.6 5.6 49 82-130 128-176 (226)
341 3ngf_A AP endonuclease, family 25.3 75 0.0026 21.0 3.5 79 16-120 90-176 (269)
342 3m8u_A Heme-binding protein A; 25.1 1.8E+02 0.0061 21.6 5.8 46 82-130 364-409 (522)
343 2b2x_A Integrin alpha-1; compu 25.1 62 0.0021 20.8 3.0 37 5-41 126-162 (223)
344 3fvw_A Putative NAD(P)H-depend 25.0 1.2E+02 0.004 19.2 4.3 39 1-42 1-42 (192)
345 1tmy_A CHEY protein, TMY; chem 25.0 92 0.0032 17.0 5.9 16 114-129 41-56 (120)
346 2dbs_A Hypothetical protein TT 24.9 62 0.0021 17.5 2.4 23 4-26 32-54 (90)
347 3duw_A OMT, O-methyltransferas 24.9 1.2E+02 0.004 19.2 4.3 47 82-128 93-141 (223)
348 3c97_A Signal transduction his 24.8 1E+02 0.0035 17.5 6.1 17 113-129 47-63 (140)
349 1mio_B Nitrogenase molybdenum 24.8 2.1E+02 0.0071 21.0 9.1 28 103-130 368-395 (458)
350 3qvl_A Putative hydantoin race 24.7 32 0.0011 23.0 1.6 20 117-136 171-190 (245)
351 3okp_A GDP-mannose-dependent a 24.7 82 0.0028 21.7 3.8 40 1-43 1-45 (394)
352 3p52_A NH(3)-dependent NAD(+) 24.6 1.6E+02 0.0055 19.6 7.4 36 3-41 25-60 (249)
353 3kto_A Response regulator rece 24.6 60 0.0021 18.5 2.7 11 117-127 47-57 (136)
354 1zpw_X Hypothetical protein TT 24.5 71 0.0024 17.7 2.8 26 5-32 4-29 (90)
355 1g8l_A Molybdopterin biosynthe 24.3 1.3E+02 0.0044 22.0 4.7 44 83-126 204-249 (411)
356 3tem_A Ribosyldihydronicotinam 24.3 1.5E+02 0.0053 19.3 6.6 22 82-103 18-39 (228)
357 3n5l_A Binding protein compone 24.2 1.4E+02 0.0047 20.4 4.8 40 87-128 26-65 (310)
358 3crn_A Response regulator rece 24.1 1E+02 0.0036 17.3 5.7 40 86-129 17-56 (132)
359 1mb3_A Cell division response 24.1 98 0.0034 17.0 5.7 41 85-129 14-54 (124)
360 1tvm_A PTS system, galactitol- 24.0 1.1E+02 0.0038 17.6 4.2 42 85-132 39-81 (113)
361 1vp8_A Hypothetical protein AF 23.8 86 0.0029 20.5 3.3 46 80-127 27-73 (201)
362 2qzj_A Two-component response 23.7 1.1E+02 0.0037 17.4 5.9 41 85-129 17-57 (136)
363 2rjn_A Response regulator rece 23.6 1.2E+02 0.004 17.7 6.2 43 84-130 19-61 (154)
364 3ibs_A Conserved hypothetical 23.6 54 0.0019 20.8 2.5 39 4-43 112-150 (218)
365 3vmk_A 3-isopropylmalate dehyd 23.6 82 0.0028 22.8 3.5 27 15-41 179-205 (375)
366 2qjg_A Putative aldolase MJ040 23.4 1.2E+02 0.0042 20.2 4.3 44 85-128 134-187 (273)
367 1qkk_A DCTD, C4-dicarboxylate 23.4 1.2E+02 0.004 17.7 5.2 42 85-130 16-57 (155)
368 3f6r_A Flavodoxin; FMN binding 23.3 1.2E+02 0.0042 17.8 4.6 37 6-42 3-40 (148)
369 2pl1_A Transcriptional regulat 23.3 1E+02 0.0034 16.8 5.7 18 112-129 36-53 (121)
370 2wte_A CSA3; antiviral protein 23.1 1.7E+02 0.0059 19.5 8.9 92 5-132 9-105 (244)
371 2jba_A Phosphate regulon trans 23.1 1E+02 0.0036 17.0 4.3 15 114-128 40-54 (127)
372 3p7i_A PHND, subunit of alkylp 23.0 1.4E+02 0.0047 20.6 4.6 39 88-128 37-75 (321)
373 3egc_A Putative ribose operon 23.0 1.7E+02 0.0057 19.3 6.1 48 83-130 25-74 (291)
374 3tn4_A Phosphotriesterase; lac 23.0 1.3E+02 0.0046 21.4 4.6 47 82-128 192-240 (360)
375 4gvo_A LMO2349 protein; struct 23.0 1.3E+02 0.0046 19.2 4.4 38 86-126 37-75 (243)
376 2goy_A Adenosine phosphosulfat 23.0 1.5E+02 0.0052 20.0 4.7 33 5-42 55-87 (275)
377 3tfx_A Orotidine 5'-phosphate 23.0 1.8E+02 0.0062 19.7 5.8 22 4-26 4-25 (259)
378 3udu_A 3-isopropylmalate dehyd 22.9 73 0.0025 22.9 3.2 26 15-40 167-192 (361)
379 2k4m_A TR8_protein, UPF0146 pr 22.7 42 0.0014 20.9 1.7 27 107-133 101-127 (153)
380 3ckm_A YRAM (HI1655), LPOA; pe 22.7 1.8E+02 0.0061 19.8 5.1 24 107-130 188-211 (327)
381 3zxs_A Cryptochrome B, rscryb; 22.6 1.5E+02 0.0052 22.5 4.9 48 83-130 67-119 (522)
382 2r48_A Phosphotransferase syst 22.6 67 0.0023 18.6 2.4 43 86-130 23-67 (106)
383 2e0i_A 432AA long hypothetical 22.5 1.5E+02 0.0051 21.8 4.8 83 16-127 14-96 (440)
384 1q74_A 1D-MYO-inosityl 2-aceta 22.4 2E+02 0.0067 19.8 6.6 18 109-126 118-135 (303)
385 3r0j_A Possible two component 22.4 1.6E+02 0.0056 19.0 5.5 43 83-129 34-76 (250)
386 3tr6_A O-methyltransferase; ce 22.4 99 0.0034 19.6 3.6 48 81-128 98-148 (225)
387 1cnz_A IPMDH, IMDH, protein (3 22.3 90 0.0031 22.5 3.5 28 15-42 170-197 (363)
388 3n53_A Response regulator rece 22.3 1.2E+02 0.004 17.2 4.5 15 114-128 40-54 (140)
389 3lcm_A SMU.1420, putative oxid 22.2 1.6E+02 0.0053 18.6 5.3 22 109-132 64-85 (196)
390 2rdm_A Response regulator rece 22.2 1.1E+02 0.0038 17.0 6.0 40 86-129 19-59 (132)
391 3ouz_A Biotin carboxylase; str 22.2 1.4E+02 0.0048 21.6 4.7 37 2-43 4-40 (446)
392 1wqa_A Phospho-sugar mutase; a 22.1 97 0.0033 22.7 3.8 40 5-44 42-81 (455)
393 1dc7_A NTRC, nitrogen regulati 22.1 1.1E+02 0.0037 16.7 3.8 17 112-128 39-55 (124)
394 2q88_A EHUB, putative ABC tran 22.1 1.4E+02 0.0047 19.1 4.3 39 86-127 40-79 (257)
395 3f2v_A General stress protein 22.1 1.4E+02 0.0047 19.0 4.2 46 85-132 19-70 (192)
396 1z7e_A Protein aRNA; rossmann 22.0 1.2E+02 0.0039 23.4 4.4 41 88-130 45-85 (660)
397 3tqk_A Phospho-2-dehydro-3-deo 21.9 2.2E+02 0.0076 20.3 7.6 110 5-131 49-164 (346)
398 3u1h_A 3-isopropylmalate dehyd 21.9 92 0.0032 22.7 3.5 27 15-41 186-212 (390)
399 1uz5_A MOEA protein, 402AA lon 21.8 2E+02 0.0068 20.9 5.3 42 83-126 207-252 (402)
400 3ipc_A ABC transporter, substr 21.7 2E+02 0.0067 19.6 7.0 20 109-128 206-225 (356)
401 3tfw_A Putative O-methyltransf 21.6 58 0.002 21.4 2.4 48 81-128 97-144 (248)
402 1gpm_A GMP synthetase, XMP ami 21.6 2.6E+02 0.0089 21.0 8.8 35 5-42 228-262 (525)
403 3a7n_A UDG, uracil-DNA glycosy 21.6 1.9E+02 0.0066 19.4 5.2 37 103-141 177-215 (238)
404 3mjd_A Orotate phosphoribosylt 21.5 1.2E+02 0.0041 20.2 3.8 38 4-42 136-173 (232)
405 1ihn_A Hypothetical protein MT 21.5 98 0.0034 18.0 3.1 14 119-132 60-73 (113)
406 3l49_A ABC sugar (ribose) tran 21.4 1.8E+02 0.0061 19.0 6.1 47 83-129 22-70 (291)
407 3pdk_A Phosphoglucosamine muta 21.3 1.2E+02 0.0041 22.5 4.2 41 4-44 61-101 (469)
408 2ffc_A Orotidine 5-monophospha 21.3 2.3E+02 0.0079 20.3 6.0 45 85-129 150-198 (353)
409 3cbg_A O-methyltransferase; cy 21.2 1.1E+02 0.0036 19.8 3.6 48 82-129 107-157 (232)
410 1iej_A Ovotransferrin; iron, m 21.1 2.2E+02 0.0077 20.0 5.4 40 86-127 21-60 (332)
411 3vdp_A Recombination protein R 21.0 1.7E+02 0.0057 19.4 4.3 34 3-36 149-182 (212)
412 3fxa_A SIS domain protein; str 21.0 46 0.0016 21.1 1.7 41 3-44 91-131 (201)
413 2ayx_A Sensor kinase protein R 21.0 1.8E+02 0.0063 19.0 4.9 43 84-130 141-183 (254)
414 1eiw_A Hypothetical protein MT 20.9 1.3E+02 0.0043 17.5 3.4 39 5-43 40-78 (111)
415 3pmg_A Alpha-D-glucose-1,6-bis 20.9 92 0.0031 23.7 3.5 34 5-38 54-87 (561)
416 3f6c_A Positive transcription 20.8 1.2E+02 0.0042 16.9 6.0 44 84-130 13-56 (134)
417 3qax_A Probable ABC transporte 20.8 1.5E+02 0.0052 18.9 4.3 39 86-127 59-97 (268)
418 2hnk_A SAM-dependent O-methylt 20.8 1.2E+02 0.0041 19.6 3.8 47 82-128 95-155 (239)
419 3n2n_F Anthrax toxin receptor 20.7 1.2E+02 0.0042 18.4 3.7 37 5-41 108-146 (185)
420 2owr_A UDG, uracil-DNA glycosy 20.6 1.6E+02 0.0055 19.5 4.2 36 103-141 157-192 (218)
421 3h7m_A Sensor protein; histidi 20.6 1.6E+02 0.0055 18.2 4.9 37 85-124 38-74 (234)
422 1a05_A IPMDH, IMDH, 3-isopropy 20.5 1E+02 0.0035 22.1 3.5 28 15-42 165-192 (358)
423 1n3y_A Integrin alpha-X; alpha 20.5 54 0.0018 20.4 2.0 38 5-42 112-150 (198)
424 3c3m_A Response regulator rece 20.4 1.3E+02 0.0044 17.0 5.9 16 114-129 41-56 (138)
425 2a9o_A Response regulator; ess 20.4 1.2E+02 0.004 16.5 5.5 40 86-129 15-54 (120)
426 1vlc_A 3-isopropylmalate dehyd 20.4 1E+02 0.0036 22.2 3.5 28 15-42 174-201 (366)
427 1w0d_A 3-isopropylmalate dehyd 20.4 89 0.0031 22.2 3.2 28 15-42 154-181 (337)
428 2hpv_A FMN-dependent NADH-azor 20.3 1.7E+02 0.0058 18.4 5.4 19 112-132 88-106 (208)
429 1req_B Methylmalonyl-COA mutas 20.3 1.2E+02 0.0042 23.6 4.1 40 88-129 530-569 (637)
430 1vhn_A Putative flavin oxidore 20.2 2.2E+02 0.0075 19.6 5.8 36 94-129 124-162 (318)
431 1k77_A EC1530, hypothetical pr 20.2 1E+02 0.0035 20.0 3.4 24 16-39 82-105 (260)
432 1jx7_A Hypothetical protein YC 20.2 1.3E+02 0.0044 16.8 4.4 37 6-42 3-44 (117)
433 3l52_A Orotidine 5'-phosphate 20.1 2.2E+02 0.0076 19.6 6.4 94 5-127 23-133 (284)
434 3g1w_A Sugar ABC transporter; 20.1 2E+02 0.0068 19.0 5.0 48 83-130 21-71 (305)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.94 E-value=1.5e-26 Score=147.12 Aligned_cols=131 Identities=17% Similarity=0.187 Sum_probs=107.7
Q ss_pred CCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCC
Q 032042 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (148)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
|++++||||+|+|+.+..++++|+.+|+..+++++++||.++...... ...+ ..+...+...+..
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~----------~~~~-----~~~~~~~~~~~~~ 67 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTP----------ALDP-----VLSELLDAEAAHA 67 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCG----------GGHH-----HHHHHHHHHHHHH
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc----------cccc-----ccHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999987643210 0000 1112333333455
Q ss_pred hhhHHHHHHHhhhcCc-eEEEEEeeCChhHHHHH-HHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 82 PETLDIVNTVARQKQI-VVVMKIFWGDPREKICE-AIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~I~~-~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
++.++.+.+.+...|+ +++..+..|++.+.|++ ++++.++||||||+++++.+.++++||++++|+
T Consensus 68 ~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl 135 (146)
T 3s3t_A 68 KDAMRQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVV 135 (146)
T ss_dssp HHHHHHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHh
Confidence 6778888888888899 89999999999999999 999999999999999999999999999999886
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.93 E-value=8.5e-26 Score=146.09 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=104.0
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCC-----CCCccccccccCCCCCC--c-CCCCCchhHHHH
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG-----GLEKGEQQLWEDSGSPL--I-PLAEFSEPTIMK 74 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~-----~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~ 74 (148)
++++||||+|+|+.+.+++++|..+|+..+++++++||.++. .... + +... . +. .....+.+.
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~-----~---~~~~~~~~~~-~~~~~~~~~ 74 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFS-----L---LLGVAGLNKS-VEEFENELK 74 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC--------------------------CHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCcccccccccc-----c---cccccccccc-hhhhHHHHH
Confidence 589999999999999999999999999999999999999854 1100 0 0000 0 10 000001122
Q ss_pred hhcCCCChhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 75 KYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
+...+..++.++.+.+.+...|++++.++..|++.+.|++++++.++||||||+++++.++++++||++++|+
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl 147 (162)
T 1mjh_A 75 NKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVI 147 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHH
Confidence 2333345667777777787789999988888999999999999999999999999999999999999999886
No 3
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.93 E-value=1.2e-26 Score=147.74 Aligned_cols=133 Identities=20% Similarity=0.070 Sum_probs=103.7
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChh
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (148)
+++||||+|+|+.+..++++|+.+|+..+++++++|+.++..... .+... .+...... ..+...+..++
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~----~~~~~-~~~~~~~~------~~~~~~~~~~~ 70 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLE----ASLSM-ARPEQLDI------PDDALKDYATE 70 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHH----HTBSS-CCCGGGCC------CTTHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccc----ccccc-cChhhhhh------HHHHHHHHHHH
Confidence 599999999999999999999999999999999999998653110 00000 00000011 11112223467
Q ss_pred hHHHHHHHhhhcCceE---EEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 84 TLDIVNTVARQKQIVV---VMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~---~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
.++.+.+.+...|+++ +..+..|++.+.|++++++.++||||||+++++.+.++++||++++|+
T Consensus 71 ~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl 137 (147)
T 3hgm_A 71 IAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVA 137 (147)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHH
Confidence 7788888888889887 888889999999999999999999999999999999999999999886
No 4
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.93 E-value=7e-26 Score=147.62 Aligned_cols=140 Identities=18% Similarity=0.166 Sum_probs=100.7
Q ss_pred CCCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCcccccccc-CCCCCCcCCCCCchhHHHHhhcCC
Q 032042 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWE-DSGSPLIPLAEFSEPTIMKKYGAK 79 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
|+++++||||+|+++.+..++++|..+|+..+++|+++||.++....... ..+. .++.+.....+ +.+...+
T Consensus 2 ~~m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~ 74 (170)
T 2dum_A 2 IFMFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELM-DGYSFFYDNAEIELKD------IKEKLKE 74 (170)
T ss_dssp --CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC-------------CCTT------SHHHHHH
T ss_pred ccccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc-cccccccccccccHHH------HHHHHHH
Confidence 34689999999999999999999999999999999999998864311000 0000 00000000111 1112222
Q ss_pred CChhhHHHHHHHhhhcCceEEE--EEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 80 PDPETLDIVNTVARQKQIVVVM--KIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
..++.++.+.+.+...|++++. .+..|++.+.|++++++.++||||||+++++.+.++++||++++|+
T Consensus 75 ~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl 144 (170)
T 2dum_A 75 EASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVL 144 (170)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHH
Confidence 3456677777777777888887 7888999999999999999999999999999999999999999886
No 5
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.93 E-value=1.4e-25 Score=144.36 Aligned_cols=129 Identities=17% Similarity=0.081 Sum_probs=104.9
Q ss_pred CCCccEEEEEec--CCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcC
Q 032042 1 MDGTRRVGVAVD--FSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA 78 (148)
Q Consensus 1 m~~~~~ILv~~d--~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
||++++||||+| +++.+..++++|..+|+..+++++++||.++..... ... ... ...+...
T Consensus 12 ~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~----------~~~-----~~~--~~~~~~~ 74 (156)
T 3fg9_A 12 PLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINI----------FDS-----LTP--SKIQAKR 74 (156)
T ss_dssp CCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTC----------CCS-----SHH--HHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccc----------ccc-----CCH--HHHHHHH
Confidence 678999999999 999999999999999999999999999998754311 000 111 2333333
Q ss_pred CCChhhHHHHHHHhhhcCc-eEEEEEee-CChhHHHHHH-HhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 79 KPDPETLDIVNTVARQKQI-VVVMKIFW-GDPREKICEA-IDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-g~~~~~I~~~-a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
+..++.++.+.+.+.+.|+ .++..+.. |++.++|+++ +++.++||||||+++++.++. ++||++++|+
T Consensus 75 ~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~-~~Gs~~~~vl 145 (156)
T 3fg9_A 75 KHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHSK-IAGAIGPRLA 145 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTSS-SCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccce-eecchHHHHH
Confidence 4456778888888888899 58999998 9999999999 999999999999999999974 8999999886
No 6
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.93 E-value=3.5e-25 Score=141.47 Aligned_cols=132 Identities=20% Similarity=0.262 Sum_probs=87.2
Q ss_pred CCCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCC
Q 032042 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
||++++||||+|+|+.+..++++|..+|+..+++++++||.++...... .+ + ...+.. ..+ ..+..
T Consensus 3 m~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---~~---~-~~~~~~-~~~---~~~~~--- 68 (150)
T 3tnj_A 3 MSVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDT---PY---G-TAIPLD-TET---TYDAM--- 68 (150)
T ss_dssp -CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC-----------C---T-TCCCSS-SCC---CHHHH---
T ss_pred CCccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCcccccc---cc---c-cccCcC-HHH---HHHHH---
Confidence 8999999999999999999999999999999999999999986542100 00 0 111111 110 11111
Q ss_pred ChhhHHHHHHHhhhcCce-EEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 81 DPETLDIVNTVARQKQIV-VVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
.++..+.+.+.+++.|++ ++..+..|++.+.|++++++.++||||||+++++.+. +++||++++|+
T Consensus 69 ~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl 135 (150)
T 3tnj_A 69 LDVEKQKLSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVL 135 (150)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHH
Confidence 123333344444455776 5777888999999999999999999999999999999 99999999886
No 7
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.92 E-value=5.5e-25 Score=142.74 Aligned_cols=129 Identities=21% Similarity=0.165 Sum_probs=100.2
Q ss_pred CCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEE--EEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCC
Q 032042 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILV--TVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAK 79 (148)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
..+++||||+|+|+.+..++++|..+|+ .+++|+++ ||.++..... +... +.. .+.+...+
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~---------~~~~-~~~------~~~~~~~~ 77 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARA---------ADIL-KDE------SYKVTGTA 77 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC------------------------------------CC
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCccccc---------cccc-ccH------HHHHHHHH
Confidence 4579999999999999999999999999 99999999 8876543100 0000 000 12233445
Q ss_pred CChhhHHHHHHHhhhcCce-EEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 80 PDPETLDIVNTVARQKQIV-VVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
..++.++.+.+.+...|++ ++..+..|++.+.|++++++.++||||||+++++.+.++++||++++|+
T Consensus 78 ~~~~~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl 146 (163)
T 1tq8_A 78 PIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVS 146 (163)
T ss_dssp THHHHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHH
Confidence 5677888888888888998 9999989999999999999999999999999999999999999999886
No 8
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.92 E-value=2e-25 Score=143.67 Aligned_cols=120 Identities=22% Similarity=0.219 Sum_probs=100.3
Q ss_pred CCccEEEEEecC-CHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCC
Q 032042 2 DGTRRVGVAVDF-SACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (148)
Q Consensus 2 ~~~~~ILv~~d~-s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
|++++||||+|+ ++.+..++++|..+|+..+++|+++||.+.... .. + ...+ .
T Consensus 22 mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~-----------------~~---~--~~~~----~ 75 (155)
T 3dlo_A 22 MIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR-----------------TK---D--EDII----E 75 (155)
T ss_dssp CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT-----------------SC---H--HHHH----H
T ss_pred cccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc-----------------cc---H--HHHH----H
Confidence 458999999999 999999999999999999999999999885321 00 1 1221 2
Q ss_pred ChhhHHHHHHHhhhcCceEEEE--EeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 81 DPETLDIVNTVARQKQIVVVMK--IFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
.++.++.+.+.+.+.|++++.. +..|++.++|++++++.++||||||+++++.+.++++||++++|+
T Consensus 76 ~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl 144 (155)
T 3dlo_A 76 AKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVI 144 (155)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHH
Confidence 4577777888888788877665 445899999999999999999999999999999999999999886
No 9
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.92 E-value=7.2e-25 Score=138.19 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=102.2
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhc-ccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcC-CCC
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNV-VRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA-KPD 81 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la-~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (148)
+++||||+|+|+.+..++++|..+| +..+++++++|+.++....... . . ......+... +..
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~---------~------~-~~~~~~~~~~~~~~ 64 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEA---------V------L-AAYDEIEMKEEEKA 64 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHH---------H------H-HHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCccccc---------c------c-CcHHHHHHHHHHHH
Confidence 5899999999999999999999999 9999999999999876432100 0 0 0001222222 445
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
++.++.+.+.+...|++++..+..|++.+.|+++++ ++||||||+++++.+.+++ ||++++|+
T Consensus 65 ~~~l~~~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl 127 (138)
T 3idf_A 65 KLLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFI 127 (138)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHH
Confidence 677888888888889999999999999999999999 8999999999999999999 99999886
No 10
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.91 E-value=1.2e-24 Score=137.15 Aligned_cols=124 Identities=19% Similarity=0.132 Sum_probs=91.6
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChh
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (148)
+++||||+|+++.+..++++|..+|+..+++++++||.++... . +. ...+ .+..+ ...+ ..++
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~-~-----~~----~~~~-~~~~~--~~~~----~~~~ 64 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPD-Y-----LG----EPFF-EEALR--RRLE----RAEG 64 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC-------------------------C--HHHH----HHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCc-c-----cc----ccch-HHHHH--HHHH----HHHH
Confidence 5999999999999999999999999999999999999874321 0 00 0001 01100 1111 1223
Q ss_pred hHHHHHHHhhhcCc-eEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 84 TLDIVNTVARQKQI-VVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
.++.+.+ ..|+ +++..+..|++.+.|++++++.++||||||+++++.+.++++||++++|+
T Consensus 65 ~l~~~~~---~~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl 126 (137)
T 2z08_A 65 VLEEARA---LTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVV 126 (137)
T ss_dssp HHHHHHH---HHCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHH
T ss_pred HHHHHHH---HcCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHH
Confidence 3333332 2677 77777888999999999999999999999999999999999999999886
No 11
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.90 E-value=4.9e-24 Score=139.50 Aligned_cols=136 Identities=20% Similarity=0.329 Sum_probs=90.0
Q ss_pred CccEEEEEecCCH---------hHHHHHHHHHhhc-cc--CCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchh
Q 032042 3 GTRRVGVAVDFSA---------CSKKALQWAADNV-VR--NGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEP 70 (148)
Q Consensus 3 ~~~~ILv~~d~s~---------~s~~al~~a~~la-~~--~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (148)
.+++||||+|+++ .+..++++|+.++ +. .+++|+++||.++.... +...+..... ....
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~------~~~~~~~~~~---~~~~ 74 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDG------FDDVDSIYAS---PEDF 74 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------------CCCCS---HHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeeccccc------ccccccccCC---HHHH
Confidence 4799999999999 9999999999987 43 68999999998653210 0000000000 0000
Q ss_pred HHHHhhcCCCChhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 71 TIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
+.+.+...+..++.++.+.+.+...|+++++++..|++.+.|++++++.++||||||+++++.+.++++||++++|+
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl 151 (175)
T 2gm3_A 75 RDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCV 151 (175)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHH
Confidence 01111111123456677777777789999998889999999999999999999999999999999999999999886
No 12
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.89 E-value=1.6e-23 Score=148.54 Aligned_cols=134 Identities=19% Similarity=0.169 Sum_probs=103.7
Q ss_pred CCCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCC
Q 032042 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
||++++||||+|+|+.+..++++|+.+|+..+++|+++|+.++..... ..... ....+.+.+...+.
T Consensus 4 M~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~----------~~~~~---~~~~~~~~~~~~~~ 70 (319)
T 3olq_A 4 MEKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDM----------TTLLS---PDERNAMRKGVINQ 70 (319)
T ss_dssp -CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGC----------TTTSC---HHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhh----------ccccC---hhhHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999987533110 00000 00111222333334
Q ss_pred ChhhHHHHHHHhhhcCceEEEEEe-eCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 81 DPETLDIVNTVARQKQIVVVMKIF-WGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
+++.++.+.+.+...|+++++.+. .|++.+.|++++++.++||||||+++++.+.+.++||++.+|+
T Consensus 71 ~~~~l~~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl 138 (319)
T 3olq_A 71 KTAWIKQQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLL 138 (319)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHH
Confidence 456777777777778999999998 7999999999999999999999999999999999999998876
No 13
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.88 E-value=2.7e-23 Score=131.56 Aligned_cols=126 Identities=13% Similarity=0.192 Sum_probs=93.8
Q ss_pred cEEEEEecCCHh--HHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCCh
Q 032042 5 RRVGVAVDFSAC--SKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (148)
Q Consensus 5 ~~ILv~~d~s~~--s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (148)
++||||+|+|+. +..++++|..+|+..+++++++||.++..... ..+.... .... ..++ ..+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-------~~~~~~~--~~~~---~~~~----~~~ 65 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYA-------SLGMAYT--AELP---GMDE----LRE 65 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------------------CHHH----HHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccc-------ccccccc--chhh---hHHH----HHH
Confidence 799999999999 99999999999999999999999998754221 0000000 0000 1111 124
Q ss_pred hhHHHHHHHhhhcC---ceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 83 ETLDIVNTVARQKQ---IVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 83 ~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
+.++.+.+.+++.+ ..++..+..|++.+.|++++++.++||||||+++ +.+.++++||++++|+
T Consensus 66 ~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~ 132 (143)
T 3fdx_A 66 GSETQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVV 132 (143)
T ss_dssp HHHHHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHH
Confidence 55566666666665 4578888889999999999999999999999995 8899999999999876
No 14
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.87 E-value=1e-21 Score=124.07 Aligned_cols=125 Identities=19% Similarity=0.136 Sum_probs=92.3
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChh
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (148)
+++||||+|+|+.+..++++|..+|+..+++++++||.++..... ..... . ...+...+..++
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~----------~~~~~----~---~~~~~~~~~~~~ 64 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLY----------TGLID----V---NMSSMQDRISTE 64 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGC----------CCCEE----H---HHHHHTTCCCCH
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhh----------ccccc----c---chHHHHHHHHHH
Confidence 699999999999999999999999999999999999985421100 00000 0 111122222334
Q ss_pred hHHHHHHHhhhcCceE-EEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeecccccccccC
Q 032042 84 TLDIVNTVARQKQIVV-VMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIFF 148 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~-~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl~ 148 (148)
..+.+.+.+...|+++ +..+..|++.+.|++++++.++||||||++ ++.+++ +||++++|+.
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~ 127 (141)
T 1jmv_A 65 TQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMN 127 (141)
T ss_dssp HHHHHHHHHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHh
Confidence 4445555555567775 566778999999999999999999999999 988887 4999998863
No 15
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.87 E-value=5.9e-23 Score=144.33 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=105.2
Q ss_pred CCCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCC
Q 032042 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
||++++||||+|+|+.+..++++|+.+|+..+++|+++|+.+....... ... .... .+.+...+.
T Consensus 19 m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~--------~~~----~~~~---~~~~~~~~~ 83 (294)
T 3loq_A 19 YFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTV--------SGG----IDID---HYIDEMSEK 83 (294)
T ss_dssp SSTTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-------------C----CCTT---HHHHHHHHH
T ss_pred HHhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccc--------ccc----ccHH---HHHHHHHHH
Confidence 7789999999999999999999999999999999999999987643210 000 0011 233333344
Q ss_pred ChhhHHHHHHHhhhcCceEEE-EEe-eCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 81 DPETLDIVNTVARQKQIVVVM-KIF-WGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
.++.++.+.+.+...|++++. .+. .|++.+.| ++++.++||||||+++++.+.++++||++++|+
T Consensus 84 ~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl 150 (294)
T 3loq_A 84 AEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVL 150 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHH
Confidence 567888888888888999998 777 89999999 899999999999999999999999999999875
No 16
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.85 E-value=2e-21 Score=136.35 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=99.8
Q ss_pred CCCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCC
Q 032042 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
|+++++||||+|+|+.+..++++|+.+|+..+++++++|+.++ +.
T Consensus 4 M~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~-----------------------------------~~ 48 (290)
T 3mt0_A 4 MQAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR-----------------------------------RD 48 (290)
T ss_dssp TTTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS-----------------------------------SC
T ss_pred hhhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc-----------------------------------HH
Confidence 7789999999999999999999999999999999999999762 01
Q ss_pred ChhhHHHHHHHhhhcCceEEEEEee-CChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 81 DPETLDIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
.++.++.+.+.+...|++++..+.. |++.+.|++++++.++||||||+++++.+.+.++||++.+++
T Consensus 49 ~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl 116 (290)
T 3mt0_A 49 HSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLL 116 (290)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHH
Confidence 3456677777777789999998874 789999999999999999999999999999999999998876
No 17
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.84 E-value=5.1e-21 Score=135.32 Aligned_cols=128 Identities=17% Similarity=0.194 Sum_probs=99.3
Q ss_pred CCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCC
Q 032042 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (148)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
+++++||||+|+|+.+..++++|+.+|+..+++++++|+.++... .+.. . . ... ...+...+..
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~------~~~~---~--~---~~~--~~~~~~~~~~ 80 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVA------TWLE---V--P---LPP--GVLRWQQDHG 80 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCC------CTTC---C--C---CCH--HHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCccc------cccc---C--C---CCc--hhhHHHHHHH
Confidence 458999999999999999999999999999999999999874321 0100 0 0 000 1222222234
Q ss_pred hhhHHHHHHHhhhc-----CceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 82 PETLDIVNTVARQK-----QIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 82 ~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
++.++.+.+.+... |++++..+..|++.+.|+++++ ++||||||+++++.+.++++||++++|+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl 149 (309)
T 3cis_A 81 RHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLL 149 (309)
T ss_dssp HHHHHHHHHHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHH
Confidence 56677777777654 8899998888999999999997 6999999999999999999999999876
No 18
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.83 E-value=6.3e-21 Score=133.78 Aligned_cols=124 Identities=16% Similarity=0.107 Sum_probs=93.7
Q ss_pred CccEEEEEecCCHh-------HHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHh
Q 032042 3 GTRRVGVAVDFSAC-------SKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKK 75 (148)
Q Consensus 3 ~~~~ILv~~d~s~~-------s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
.+++||||+|+|+. +.+++++|..+++..+++++++||.++..... . .+ +. + ..+
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-----------~-~~--~~-~---~~~ 194 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSS-----------A-DP--TF-Q---LSE 194 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-----------------------CH-H---HHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccc-----------c-Cc--hh-H---HHH
Confidence 47999999999998 89999999999999999999999998654211 0 01 00 0 111
Q ss_pred hcCCCChhhHHHHHHHhhhcCce-EEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 76 YGAKPDPETLDIVNTVARQKQIV-VVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
.. .++..+.+.+.+++.|++ ++..+..|++.+.|++++++.++||||||++|++.+.++++||++++|+
T Consensus 195 ~~---~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl 264 (290)
T 3mt0_A 195 TI---EARYREACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVL 264 (290)
T ss_dssp HH---HHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHH
Confidence 11 123334444555556774 5667778999999999999999999999999999999999999999886
No 19
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.82 E-value=3.7e-21 Score=133.43 Aligned_cols=135 Identities=18% Similarity=0.016 Sum_probs=99.0
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCch-hHHHHhhcCCCChh
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSE-PTIMKKYGAKPDPE 83 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (148)
++||||+|+|+.+..++++|..+|+..+++++++|+.++..... ....+.+.. ..+..+ ++...+...+..++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 74 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARI-----PELLDFGAL-TVPVPVLRTELERALALRGEA 74 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTH-----HHHC--------CHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCccc-----ccccCchHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999987532100 000000100 011100 00001222233466
Q ss_pred hHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCC-ccceeeccccccccc
Q 032042 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG-KLKRLDFINIELLIF 147 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~-~~~~~~~Gs~a~~vl 147 (148)
.++.+.+.+...|++++..+..|++.+.|+++ +.++||||||+++++ .+.+.++||++++|+
T Consensus 75 ~l~~~~~~~~~~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~ 137 (268)
T 3ab8_A 75 VLERVRQSALAAGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVL 137 (268)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHH
Confidence 77778777877899999988899999999999 778999999999999 999999999999876
No 20
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.81 E-value=8.1e-20 Score=128.30 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=98.9
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCCh
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (148)
.+++||||+|+++.+.+++++|..+++..+++++++|+.++.. .+
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-----------------------------------~~ 213 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-----------------------------------KT 213 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-----------------------------------CH
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-----------------------------------HH
Confidence 5789999999999999999999999999999999999987521 13
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
+.++.+.+.+.+.|++++..+..|++.++|++++++.++||||||+++++.+.++++||++++|+
T Consensus 214 ~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl 278 (294)
T 3loq_A 214 ADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVI 278 (294)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHH
Confidence 55667777787789999988888999999999999999999999999999999999999999876
No 21
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.81 E-value=4.9e-20 Score=115.95 Aligned_cols=121 Identities=14% Similarity=0.058 Sum_probs=86.2
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEe-cC-CCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCC
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV-PE-GGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
++++||||+|+|+.+..++++|..+|+..+++++++|+. +. +... .+...+. +.. . ...+...+.
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-----~~~~~~~---~~~--~---~~~~~~~~~ 69 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLER-----ANVTFGL---PFP--P---EIKEESKKR 69 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHH-----HHHHHCC---CCC--T---HHHHHHHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccc-----cccccCC---CCC--h---HHHHHHHHH
Confidence 579999999999999999999999999999999999998 63 1000 0000001 101 0 122222223
Q ss_pred ChhhHHHHHHH--hhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 81 DPETLDIVNTV--ARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 81 ~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
.++.++.+ +. ....| +++.++..|++.+.|++++++.++||||||++|+ |++++|+
T Consensus 70 ~~~~l~~~-~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl 127 (138)
T 1q77_A 70 IERRLREV-WEKLTGSTE-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVI 127 (138)
T ss_dssp HHHHHHHH-HHHHHSCCC-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHH
T ss_pred HHHHHHHH-HHHhhccCC-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHH
Confidence 34566666 55 34456 7777788899999999999999999999999986 6776664
No 22
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.79 E-value=7.3e-19 Score=124.25 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=94.0
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCCh
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (148)
.+++||||+|+++.+..++++|..+++..+++++++|+.++.... . .+ .. +.+...+. .+
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~------------~-~~--~~-~~~~~~~~----~~ 229 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS------------E-WP--GI-DWPATQSM----AE 229 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCT------------T-CS--SC-CHHHHHHH----HH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeeccccc------------C-CC--cc-cHHHHHHH----HH
Confidence 368999999999999999999999999999999999998754311 0 00 00 00112111 12
Q ss_pred hhHHHHHHHhhh--cCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 83 ETLDIVNTVARQ--KQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 83 ~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
+.++.+.+.+.. .+++++.++..|++.+.|+++++ ++||||||+++++.+.++++||++++|+
T Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl 294 (309)
T 3cis_A 230 QVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVA 294 (309)
T ss_dssp HHHHHHHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHH
Confidence 334444433433 47888888888999999999998 7999999999999999999999999886
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.79 E-value=7.3e-20 Score=129.70 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=96.6
Q ss_pred CccEEEEEecCCH-------hHHHHHHHHHhhcccC--CCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHH
Q 032042 3 GTRRVGVAVDFSA-------CSKKALQWAADNVVRN--GDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIM 73 (148)
Q Consensus 3 ~~~~ILv~~d~s~-------~s~~al~~a~~la~~~--~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (148)
.+++||||+|+++ .+.+++++|..+++.. +++++++|+++...... ....+ .... +..
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~----------~~~~~--~~~~-~~~ 221 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINI----------AIELP--DFDP-NLY 221 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSC----------CTTCT--TCCH-HHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhh----------hccCC--cccH-HHH
Confidence 4799999999998 5799999999999998 99999999998754211 00011 1110 112
Q ss_pred HhhcCCCChhhHHHHHHHhhhcCce-EEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 74 KKYGAKPDPETLDIVNTVARQKQIV-VVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
.+.. .++..+.+.+.+.+.++. ++..+..|++.+.|++++++.++||||||+++++.+.++++||++++|+
T Consensus 222 ~~~~---~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl 293 (319)
T 3olq_A 222 NNAL---RGQHLIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLI 293 (319)
T ss_dssp HHHH---HHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHH
Confidence 2211 233444555555666663 5566778999999999999999999999999999999999999999886
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.71 E-value=1.4e-17 Score=115.39 Aligned_cols=105 Identities=15% Similarity=0.093 Sum_probs=90.1
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCCh
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (148)
.+++||||+|+++.+.+++++|..++...+++++++|+.++.. ..+
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~----------------------------------~~~ 198 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA----------------------------------RAE 198 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH----------------------------------HHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH----------------------------------HHH
Confidence 3689999999999999999999999999999999999976420 013
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccccccccc
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIELLIF 147 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~~vl 147 (148)
+.++.+.+.+.+.|++++..+..|++.++|++++++. ||||||+ .+.++++||++++|+
T Consensus 199 ~~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl 257 (268)
T 3ab8_A 199 AWALEAEAYLRDHGVEASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVI 257 (268)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCceEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHH
Confidence 4556677777778999998888899999999999997 9999999 689999999999876
No 25
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=95.47 E-value=0.16 Score=35.78 Aligned_cols=95 Identities=9% Similarity=-0.034 Sum_probs=65.6
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCE-EEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCCh
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDH-LILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~-v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (148)
.++|+|++.|..+|..++..+..+....+.+ +.++|+...... ...
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~---------------------------------~s~ 70 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRE---------------------------------SAE 70 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSST---------------------------------HHH
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCc---------------------------------ccH
Confidence 4789999999999999999888876667777 999999653210 002
Q ss_pred hhHHHHHHHhhhcCceEEEEEee--------C-Ch--------hHHHHHHHhhcCCcEEEEEecCC
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFW--------G-DP--------REKICEAIDKIPLSCLVIGNRGL 131 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~--------g-~~--------~~~I~~~a~~~~~dliV~g~~~~ 131 (148)
...+.+.+.++..|+++.+.-.. + ++ ...+.+.+++.+++.|+.|.+..
T Consensus 71 ~~~~~v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~d 136 (317)
T 1wy5_A 71 RDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLN 136 (317)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchh
Confidence 33455677777778876554321 1 11 13556678889999999987643
No 26
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=95.45 E-value=0.16 Score=33.78 Aligned_cols=88 Identities=15% Similarity=0.044 Sum_probs=51.3
Q ss_pred CCCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCC
Q 032042 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
|...+||.|-+.++.....++-.+.. ....+.+|.+ |+.+.+..
T Consensus 5 ~~~~~ri~vl~SG~gsnl~all~~~~-~~~~~~~I~~--Vis~~~~a--------------------------------- 48 (215)
T 3kcq_A 5 MKKELRVGVLISGRGSNLEALAKAFS-TEESSVVISC--VISNNAEA--------------------------------- 48 (215)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHTC-CC-CSEEEEE--EEESCTTC---------------------------------
T ss_pred CCCCCEEEEEEECCcHHHHHHHHHHH-cCCCCcEEEE--EEeCCcch---------------------------------
Confidence 44567899988888766666555543 2223344444 44432100
Q ss_pred ChhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 81 DPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
. ..+++++.|+++...-...-..+++.+..++.++|+||+...+
T Consensus 49 --~----~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 49 --R----GLLIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp --T----HHHHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred --H----HHHHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCc
Confidence 0 1245667788865422111123788899999999999997654
No 27
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=95.34 E-value=0.12 Score=38.39 Aligned_cols=96 Identities=16% Similarity=0.040 Sum_probs=68.0
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChh
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (148)
..+|+|++.+..+|..++..+..+....+.++.++|+...... . . ..+
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg----------------------~--~--------s~~ 65 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRG----------------------R--E--------SEE 65 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCT----------------------H--H--------HHH
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCc----------------------c--c--------cHH
Confidence 4689999999999999999998887777889999999753210 0 0 123
Q ss_pred hHHHHHHHhhhcCceEEEEEee--------C-Ch--------hHHHHHHHhhcCCcEEEEEecCC
Q 032042 84 TLDIVNTVARQKQIVVVMKIFW--------G-DP--------REKICEAIDKIPLSCLVIGNRGL 131 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--------g-~~--------~~~I~~~a~~~~~dliV~g~~~~ 131 (148)
..+.+.+.|+..|+++.+.-.. + ++ ...+.+.+++.+++.|++|.+..
T Consensus 66 ~~~~v~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~d 130 (464)
T 3a2k_A 66 EMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGD 130 (464)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH
T ss_pred HHHHHHHHHHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChH
Confidence 3556777788888886654332 1 11 14566778889999999986543
No 28
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=94.75 E-value=0.3 Score=29.97 Aligned_cols=110 Identities=17% Similarity=0.094 Sum_probs=68.9
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCC-CEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChh
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNG-DHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~-~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (148)
++|||-+.-.-.+.....-...+..... .++.++-.-++.. .|. . +.. ..++ .+++
T Consensus 2 ~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~VLVPa~~~~-------a~~-----~----e~~---~a~~----~A~~ 58 (138)
T 2iel_A 2 ARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLLVPAVPPP-------GWV-----Y----EEN---EVRR----RAEE 58 (138)
T ss_dssp CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEEEEEECCC-------CSC-----C------C---HHHH----HHHH
T ss_pred ceEEEEecCccCcHhHHHHHHHhhcCCCceEEEEEecCCCCc-------ccc-----c----ChH---HHHH----HHHH
Confidence 6888888765455444444355554443 6664443332211 110 0 000 1111 2356
Q ss_pred hHHHHHHHhhhcCceEE-EEEeeCChhHHHHHHHhhcC--CcEEEEEecCCCccceee
Q 032042 84 TLDIVNTVARQKQIVVV-MKIFWGDPREKICEAIDKIP--LSCLVIGNRGLGKLKRLD 138 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~-~~~~~g~~~~~I~~~a~~~~--~dliV~g~~~~~~~~~~~ 138 (148)
.++...+.++..|+++. -.+..++|..+|.+...+.+ +|=||+-+..+. .+++|
T Consensus 59 ~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~-vs~~f 115 (138)
T 2iel_A 59 EAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPG-LSRWL 115 (138)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTT-TCHHH
T ss_pred HHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCch-HHHHH
Confidence 67777777888899988 99999999999999999999 999999887544 44443
No 29
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=94.37 E-value=0.31 Score=34.48 Aligned_cols=95 Identities=15% Similarity=0.084 Sum_probs=61.9
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChh
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (148)
+.+++|++.+..+|...+..+.......+.++.++|+.....+ .+
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~-----------------------------------~e 90 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF-----------------------------------QE 90 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC-----------------------------------HH
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC-----------------------------------HH
Confidence 5689999999999999999888876544566778888543210 23
Q ss_pred hHHHHHHHhhhcCceEEEEEee-----CC-h-------------hHHHHHHHhhcCCcEEEEEecCCCc
Q 032042 84 TLDIVNTVARQKQIVVVMKIFW-----GD-P-------------REKICEAIDKIPLSCLVIGNRGLGK 133 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-----g~-~-------------~~~I~~~a~~~~~dliV~g~~~~~~ 133 (148)
..+...+.++..|+++.+.-.. |. + ...+.++++++++|.++.|.+....
T Consensus 91 t~~~v~~~~~~~gi~l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des 159 (325)
T 1zun_A 91 MYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEE 159 (325)
T ss_dssp HHHHHHHHHHTTTCCEEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSS
T ss_pred HHHHHHHHHHHcCCCEEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchh
Confidence 3455566666677775554311 11 1 0246667778899999999876443
No 30
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=94.11 E-value=0.072 Score=36.65 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=51.5
Q ss_pred cCCHhHHHHHHHHHhhcccCCC--EEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHH
Q 032042 12 DFSACSKKALQWAADNVVRNGD--HLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVN 89 (148)
Q Consensus 12 d~s~~s~~al~~a~~la~~~~~--~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (148)
-.++.+..++..|..+..+.+. +|+++.+=++. .++.+...
T Consensus 34 ~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~------------------------------------~~~~lr~a- 76 (264)
T 1o97_C 34 DLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR------------------------------------VDESLRKC- 76 (264)
T ss_dssp EECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG------------------------------------GHHHHHHH-
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh------------------------------------HHHHHHHH-
Confidence 3467888999999999877666 88877664311 01222222
Q ss_pred HHhhhcCceEEEEEee----C-Ch---hHHHHHHHhhcCCcEEEEEecCCC
Q 032042 90 TVARQKQIVVVMKIFW----G-DP---REKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 90 ~~~~~~~~~~~~~~~~----g-~~---~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
-..|.+--.++.. + ++ +..|.+.+++.++|+|++|....+
T Consensus 77 ---la~GaD~vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 124 (264)
T 1o97_C 77 ---LAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSD 124 (264)
T ss_dssp ---HHTTCSEEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTT
T ss_pred ---HhcCCCEEEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 2236653333321 1 22 457777888889999999988765
No 31
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=94.04 E-value=0.71 Score=30.56 Aligned_cols=85 Identities=14% Similarity=0.032 Sum_probs=50.8
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChh
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (148)
.+||.|-+.++.....++-.+.. ....+.+|.+|-...+.. .
T Consensus 7 ~~ri~vl~SG~gsnl~all~~~~-~~~l~~~I~~Visn~~~a-------------------------------------~ 48 (209)
T 4ds3_A 7 RNRVVIFISGGGSNMEALIRAAQ-APGFPAEIVAVFSDKAEA-------------------------------------G 48 (209)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHT-STTCSEEEEEEEESCTTC-------------------------------------T
T ss_pred CccEEEEEECCcHHHHHHHHHHH-cCCCCcEEEEEEECCccc-------------------------------------H
Confidence 46888888887766666655553 223345555444422110 0
Q ss_pred hHHHHHHHhhhcCceEEEEEee--CCh---hHHHHHHHhhcCCcEEEEEecC
Q 032042 84 TLDIVNTVARQKQIVVVMKIFW--GDP---REKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--g~~---~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..+.+++.|+++...-.. .+. .+++.+..++.++|+||+...+
T Consensus 49 ----~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 49 ----GLAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp ----HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred ----HHHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 124566778886553211 111 3688899999999999997654
No 32
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=93.74 E-value=0.81 Score=30.34 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=52.3
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhh
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (148)
+||.|-+.++.....++-.+.. ....+++|.+|-...+..
T Consensus 3 ~riavl~Sg~Gsnl~ali~~~~-~~~l~~eI~~Visn~~~a--------------------------------------- 42 (211)
T 3p9x_A 3 KRVAIFASGSGTNAEAIIQSQK-AGQLPCEVALLITDKPGA--------------------------------------- 42 (211)
T ss_dssp CEEEEECCTTCHHHHHHHHHHH-TTCCSSEEEEEEESCSSS---------------------------------------
T ss_pred CEEEEEEeCCchHHHHHHHHHH-cCCCCcEEEEEEECCCCc---------------------------------------
Confidence 5788888887777666666654 334556776655422110
Q ss_pred HHHHHHHhhhcCceEEEEEee--CCh---hHHHHHHHhhcCCcEEEEEecC
Q 032042 85 LDIVNTVARQKQIVVVMKIFW--GDP---REKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~--g~~---~~~I~~~a~~~~~dliV~g~~~ 130 (148)
...+.+.+.|+++...-.. .+. ..++.+..++.++|+||+...+
T Consensus 43 --~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 43 --KVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp --HHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred --HHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCch
Confidence 1445666778886542211 111 3578888899999999986554
No 33
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=93.21 E-value=0.13 Score=35.07 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=49.9
Q ss_pred CCHhHHHHHHHHHhhcccCCC--EEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHH
Q 032042 13 FSACSKKALQWAADNVVRNGD--HLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNT 90 (148)
Q Consensus 13 ~s~~s~~al~~a~~la~~~~~--~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (148)
.++.+..++..|..+..+ +. +|+++.+=++. .++.+.....
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~------------------------------------a~~~lr~ala 77 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ------------------------------------AAETLRTALA 77 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG------------------------------------GHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh------------------------------------HHHHHHHHHh
Confidence 357888999999999876 65 88887765421 0122222222
Q ss_pred HhhhcCceEEEEEe------eC-Ch---hHHHHHHHhhcCCcEEEEEecCCC
Q 032042 91 VARQKQIVVVMKIF------WG-DP---REKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 91 ~~~~~~~~~~~~~~------~g-~~---~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
.|.+--.++. .+ ++ +..|.+.+++.++|+|++|....+
T Consensus 78 ----~GaD~vi~v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 125 (252)
T 1efp_B 78 ----MGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAID 125 (252)
T ss_dssp ----HTCSEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred ----cCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 3555233332 12 23 457777888889999999988765
No 34
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=92.88 E-value=0.17 Score=34.59 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=49.0
Q ss_pred CHhHHHHHHHHHhhcccCCC--EEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHH
Q 032042 14 SACSKKALQWAADNVVRNGD--HLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (148)
Q Consensus 14 s~~s~~al~~a~~la~~~~~--~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (148)
++.+..++..|..+..+ +. +|+++.+=++. .++.+....
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~------------------------------------a~~~lr~al-- 79 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ------------------------------------CQETIRTAL-- 79 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT------------------------------------HHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh------------------------------------HHHHHHHHH--
Confidence 36778999999998876 65 88887765421 012222222
Q ss_pred hhhcCceEEEEEe------eC-Ch---hHHHHHHHhhcCCcEEEEEecCCC
Q 032042 92 ARQKQIVVVMKIF------WG-DP---REKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 92 ~~~~~~~~~~~~~------~g-~~---~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
..|.+--.++. .+ ++ +..|.+.+++.++|+|++|....+
T Consensus 80 --a~GaD~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d 128 (255)
T 1efv_B 80 --AMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAID 128 (255)
T ss_dssp --HHTCSEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred --hcCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccC
Confidence 23655333332 12 23 457777888889999999988765
No 35
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=92.69 E-value=1.5 Score=32.12 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=29.7
Q ss_pred CCCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecC
Q 032042 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~ 43 (148)
|...++|++++.+.-+|.-++.++... +.+|..+|+...
T Consensus 2 ~~~~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g 40 (413)
T 2nz2_A 2 MSSKGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIG 40 (413)
T ss_dssp ---CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESS
T ss_pred CCCCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECC
Confidence 434579999999999999888888763 678888888653
No 36
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=92.62 E-value=2.4 Score=31.53 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=31.4
Q ss_pred CCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecC
Q 032042 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (148)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~ 43 (148)
...++|+|++.+.-+|..++.|+.+. +.+|+.+|+...
T Consensus 8 ~~~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd~G 45 (455)
T 1k92_A 8 PVGQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLG 45 (455)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECC
T ss_pred cCCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEcC
Confidence 34579999999999999999988762 789999998653
No 37
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=92.34 E-value=1.6 Score=28.83 Aligned_cols=84 Identities=11% Similarity=0.017 Sum_probs=51.1
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhh
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (148)
+||.|-+.++.....++-.+.. ....+.+|.+|-..++.. .
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~-~~~~~~~I~~Vvs~~~~~-------------------------------------~- 41 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTR-EPNSSAQIDIVISNKAAV-------------------------------------A- 41 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHH-STTCSCEEEEEEESSTTC-------------------------------------H-
T ss_pred CeEEEEEECCchHHHHHHHHHh-cCCCCcEEEEEEeCCCCh-------------------------------------H-
Confidence 4788888888877777665544 233456665554433211 0
Q ss_pred HHHHHHHhhhcCceEEEEEee--CCh---hHHHHHHHhhcCCcEEEEEecC
Q 032042 85 LDIVNTVARQKQIVVVMKIFW--GDP---REKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~--g~~---~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..+.+.+.|+++...-.. .+. .+.+.+..++.++|+||+...+
T Consensus 42 ---~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 42 ---GLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp ---HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred ---HHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchh
Confidence 125567788886542211 111 2568888889999999997654
No 38
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=92.16 E-value=1.7 Score=28.86 Aligned_cols=87 Identities=8% Similarity=-0.093 Sum_probs=57.9
Q ss_pred ccEEEEEecC-----CHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcC
Q 032042 4 TRRVGVAVDF-----SACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA 78 (148)
Q Consensus 4 ~~~ILv~~d~-----s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
+++|||-++- .+.+..++..|..++...+.+++++.+=+...
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~--------------------------------- 49 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLK--------------------------------- 49 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCT---------------------------------
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHH---------------------------------
Confidence 4678998874 46789999999999988888888877643210
Q ss_pred CCChhhHHHHHHHhhhcCceEEEEEee----C-C---hhHHHHHHHhhcCCcEEEEEecCC
Q 032042 79 KPDPETLDIVNTVARQKQIVVVMKIFW----G-D---PREKICEAIDKIPLSCLVIGNRGL 131 (148)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----g-~---~~~~I~~~a~~~~~dliV~g~~~~ 131 (148)
...+ .+...|.+--..+.. + + .+..|.+.++++++|+|++|....
T Consensus 50 ----~~~~----~~~~~Gad~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~~ 102 (217)
T 3ih5_A 50 ----EIEK----QILPYGVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATVI 102 (217)
T ss_dssp ----TTHH----HHGGGTCSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSHH
T ss_pred ----HHHH----HHHhcCCCEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 1111 122346653333321 1 2 257888899999999999997543
No 39
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=91.82 E-value=1.9 Score=28.62 Aligned_cols=83 Identities=13% Similarity=-0.047 Sum_probs=50.1
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChh
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (148)
.+||.|-+.++.....++-.+.. ...+++|.++ +..+..
T Consensus 12 ~~ri~vl~SG~gsnl~all~~~~--~~~~~eI~~V--is~~~a------------------------------------- 50 (215)
T 3da8_A 12 PARLVVLASGTGSLLRSLLDAAV--GDYPARVVAV--GVDREC------------------------------------- 50 (215)
T ss_dssp SEEEEEEESSCCHHHHHHHHHSS--TTCSEEEEEE--EESSCC-------------------------------------
T ss_pred CcEEEEEEeCChHHHHHHHHHHh--ccCCCeEEEE--EeCCch-------------------------------------
Confidence 36888888887766666555543 1344566544 433210
Q ss_pred hHHHHHHHhhhcCceEEEEEeeC--C---hhHHHHHHHhhcCCcEEEEEecC
Q 032042 84 TLDIVNTVARQKQIVVVMKIFWG--D---PREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g--~---~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
...+.+.+.|+++...-... + -.+++.+..++.++|+||+...+
T Consensus 51 ---~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 51 ---RAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp ---HHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred ---HHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 02455667788865532111 1 13578888999999999997665
No 40
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=91.10 E-value=1.7 Score=31.91 Aligned_cols=40 Identities=20% Similarity=0.042 Sum_probs=34.4
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhccc-CCCEEEEEEEecC
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVR-NGDHLILVTVVPE 43 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~-~~~~v~ll~v~~~ 43 (148)
..+|+|++.+..+|...+..+..+... .+.++.++|+...
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhg 53 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHG 53 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCS
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECC
Confidence 478999999999999999998887766 7889999999653
No 41
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=91.06 E-value=0.6 Score=29.82 Aligned_cols=61 Identities=8% Similarity=0.124 Sum_probs=43.7
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeC-ChhHHHHHH---HhhcCCcEEEEEecCCCccceeeccccc
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWG-DPREKICEA---IDKIPLSCLVIGNRGLGKLKRLDFINIE 143 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~---a~~~~~dliV~g~~~~~~~~~~~~Gs~a 143 (148)
...++....+++.|++++..+..- ...+.+.++ ++..+++.||.++.+...+-.++-|.|.
T Consensus 26 ~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~~t~ 90 (173)
T 4grd_A 26 DVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAAKTT 90 (173)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhheecCC
Confidence 556677788888999999988753 334444444 5557899999999888877666655544
No 42
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=90.60 E-value=0.9 Score=29.24 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=44.1
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeC-ChhHHHHHH---HhhcCCcEEEEEecCCCccceeeccccc
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWG-DPREKICEA---IDKIPLSCLVIGNRGLGKLKRLDFINIE 143 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~---a~~~~~dliV~g~~~~~~~~~~~~Gs~a 143 (148)
....++..+.+++.|++++..+..- ...+.+.++ +++.+++.||.|+.+...+-.++-+.|.
T Consensus 35 ~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T~ 100 (181)
T 4b4k_A 35 WETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTN 100 (181)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcCC
Confidence 3566777888888999999998753 334444444 5567889999999887777666555443
No 43
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=90.56 E-value=3.1 Score=28.84 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=26.5
Q ss_pred HhhhcCceEEEEEee-CC---hhHHHHHHHhhcCCcEEEEEecC
Q 032042 91 VARQKQIVVVMKIFW-GD---PREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 91 ~~~~~~~~~~~~~~~-g~---~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+++.|+++...-.. .+ -.+++.+..++.++|+||+...+
T Consensus 133 ~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 133 LAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp HHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 356778886552211 11 13478889999999999997654
No 44
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=90.49 E-value=0.37 Score=35.98 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHHhhhc
Q 032042 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (148)
Q Consensus 16 ~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (148)
....+|..|+..+...+.+|..++++++.... ... .+ .....+.+..+.+.+++.
T Consensus 50 ~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~-------------------~~~---~r---~~Fl~~sL~~L~~~L~~~ 104 (482)
T 2xry_A 50 EDNWALLFSRAIAKEANVPVVVVFCLTDEFLE-------------------AGI---RQ---YEFMLKGLQELEVSLSRK 104 (482)
T ss_dssp SSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG-------------------SCH---HH---HHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHcCCcEEEEEEeChhhhc-------------------cCH---HH---HHHHHHHHHHHHHHHHHc
Confidence 44567888887766566789999998864210 000 00 011245667777777777
Q ss_pred CceEEEEEeeCChhHHHHHHHhhcCCcEEEEEe
Q 032042 96 QIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (148)
Q Consensus 96 ~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~ 128 (148)
|..+.+ ..|++.+.|.+.+++.+++.|+.-.
T Consensus 105 G~~L~v--~~g~~~~~l~~l~~~~~~~~V~~~~ 135 (482)
T 2xry_A 105 KIPSFF--LRGDPGEKISRFVKDYNAGTLVTDF 135 (482)
T ss_dssp TCCEEE--EESCHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCcEEE--EeCCHHHHHHHHHHHcCCCEEEEec
Confidence 877544 4589999999999999999998854
No 45
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=90.23 E-value=3.5 Score=28.87 Aligned_cols=40 Identities=5% Similarity=-0.040 Sum_probs=26.9
Q ss_pred HhhhcCceEEEEEee--CCh--hHHHHHHHhhcCCcEEEEEecC
Q 032042 91 VARQKQIVVVMKIFW--GDP--REKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 91 ~~~~~~~~~~~~~~~--g~~--~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+++.|+++...-.. ... .+++.+..++.++|+||+...+
T Consensus 148 ~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 148 MVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp HHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 356778886553111 111 3578899999999999997654
No 46
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=89.83 E-value=2.9 Score=27.34 Aligned_cols=89 Identities=10% Similarity=0.083 Sum_probs=57.6
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhh
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (148)
.+|+|++.+..+|...+..+.... .++.++|+...... .+.
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~~-----------------------------------~e~ 85 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLF-----------------------------------PET 85 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCBC-----------------------------------HHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCCC-----------------------------------HHH
Confidence 489999999999998888887753 45778887653210 133
Q ss_pred HHHHHHHhhhcCceEEEEEeeCC----------h-----h-----------HHHHHHHhhcCCcEEEEEecCCC
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGD----------P-----R-----------EKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~----------~-----~-----------~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
.+.+.+.++..|+++.+.-.... . . ..+.+.+++.+++.+++|.+...
T Consensus 86 ~~~v~~~~~~~gi~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd 159 (215)
T 1sur_A 86 YRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ 159 (215)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTS
T ss_pred HHHHHHHHHHhCCcEEEEeCCCCHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhh
Confidence 45566667777887665432111 0 0 13445677778889999977644
No 47
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=89.68 E-value=1.2 Score=28.09 Aligned_cols=62 Identities=5% Similarity=-0.050 Sum_probs=47.2
Q ss_pred hhHHHHHHHhhhcCceEEEEEee-CChhHHHHHHHhhcCCcEEEEEecCCCccceeecccccc
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIEL 144 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a~ 144 (148)
...++....++..|++++..+.. ....+.+.+++++...+.||.++.+.+.+-.++-|.|.-
T Consensus 13 ~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgvva~~t~~ 75 (157)
T 2ywx_A 13 KIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGVVASLTTK 75 (157)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHHHHhccCC
Confidence 55666777788889999998875 356788888888766699999988888777766555543
No 48
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=89.66 E-value=3.8 Score=28.50 Aligned_cols=83 Identities=6% Similarity=-0.042 Sum_probs=50.5
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChh
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (148)
.+||.|-+.++.....++-.+.. ....+++|.++-...+.
T Consensus 95 ~~ri~vl~Sg~g~~l~~ll~~~~-~g~l~~~i~~Visn~~~--------------------------------------- 134 (292)
T 3lou_A 95 RPKVLIMVSKLEHCLADLLFRWK-MGELKMDIVGIVSNHPD--------------------------------------- 134 (292)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHH-HTSSCCEEEEEEESSST---------------------------------------
T ss_pred CCEEEEEEcCCCcCHHHHHHHHH-cCCCCcEEEEEEeCcHH---------------------------------------
Confidence 46788888877766666666654 33445666554443221
Q ss_pred hHHHHHHHhhhcCceEEEEEee-CCh---hHHHHHHHhhcCCcEEEEEecC
Q 032042 84 TLDIVNTVARQKQIVVVMKIFW-GDP---REKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-g~~---~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+...+++.|+++...-.. .+. ..++.+..++.++|+||+...+
T Consensus 135 ----~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 135 ----FAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp ----THHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ----HHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 112366678886552211 111 3578888999999999997654
No 49
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=89.28 E-value=1.2 Score=28.36 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=44.2
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeC-ChhHHHHHHH---hhcCCcEEEEEecCCCccceeecccccc
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAI---DKIPLSCLVIGNRGLGKLKRLDFINIEL 144 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a---~~~~~dliV~g~~~~~~~~~~~~Gs~a~ 144 (148)
...++....++..|++++..+..- ...+.+.+++ ++.+++.||.++.+.+.+-.++-|.|.-
T Consensus 19 ~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~t~~ 84 (166)
T 3oow_A 19 STMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTL 84 (166)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhccCC
Confidence 556677777888999999988753 4455555665 4457899999998888776666555543
No 50
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=89.27 E-value=3.4 Score=27.38 Aligned_cols=84 Identities=12% Similarity=-0.064 Sum_probs=50.3
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChh
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (148)
.+||.|-+.++.....++-.+.. .. .+.+|.+|-...+.. .
T Consensus 5 ~~riavl~SG~Gsnl~all~~~~-~~-~~~eI~~Vis~~~~a-------------------------------------~ 45 (215)
T 3tqr_A 5 PLPIVVLISGNGTNLQAIIGAIQ-KG-LAIEIRAVISNRADA-------------------------------------Y 45 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHH-TT-CSEEEEEEEESCTTC-------------------------------------H
T ss_pred CcEEEEEEeCCcHHHHHHHHHHH-cC-CCCEEEEEEeCCcch-------------------------------------H
Confidence 35788888887777666665554 22 455555444322110 0
Q ss_pred hHHHHHHHhhhcCceEEEEEee--CC---hhHHHHHHHhhcCCcEEEEEecC
Q 032042 84 TLDIVNTVARQKQIVVVMKIFW--GD---PREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--g~---~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..+.+.+.|+++...-.. .+ -.+++.+..++.++|+||+...+
T Consensus 46 ----~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 46 ----GLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp ----HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCC
T ss_pred ----HHHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccch
Confidence 124566778886542111 11 13678899999999999996554
No 51
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=88.98 E-value=1.4 Score=28.14 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=44.7
Q ss_pred hhHHHHHHHhhhcCceEEEEEee-CChhHHHHHHHh---hcCCcEEEEEecCCCccceeecccccc
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFW-GDPREKICEAID---KIPLSCLVIGNRGLGKLKRLDFINIEL 144 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~Gs~a~ 144 (148)
...+++...++..|++++..+.. ....+.+.++++ +.+++.||.++.+.+.+-.++-|.|.-
T Consensus 25 ~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~ 90 (170)
T 1xmp_A 25 ETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNL 90 (170)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCC
Confidence 55667777788899999998875 244555566654 466899999998888777766655543
No 52
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=88.78 E-value=1.3 Score=28.41 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=44.2
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeC-ChhHHHHHH---HhhcCCcEEEEEecCCCccceeecccccc
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWG-DPREKICEA---IDKIPLSCLVIGNRGLGKLKRLDFINIEL 144 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~---a~~~~~dliV~g~~~~~~~~~~~~Gs~a~ 144 (148)
...++....++..|++++..+..- ...+.+.++ +++.+++.||.+..+.+.+-.++-|.|.-
T Consensus 26 ~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~ 91 (174)
T 3kuu_A 26 ATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKTLV 91 (174)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhccCC
Confidence 556677778888999999988753 444555555 45578899999988888776666555543
No 53
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=88.35 E-value=3.7 Score=26.68 Aligned_cols=39 Identities=15% Similarity=-0.105 Sum_probs=28.3
Q ss_pred CCCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecC
Q 032042 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~ 43 (148)
||..++++|++.+.-+|..++..+.. .+.++..+|+...
T Consensus 3 ~m~~~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~ 41 (203)
T 3k32_A 3 AMKLMDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFG 41 (203)
T ss_dssp ---CEEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECS
T ss_pred cccCCeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCC
Confidence 57778999999999988887766543 4678888888653
No 54
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=88.33 E-value=1.1 Score=28.51 Aligned_cols=62 Identities=11% Similarity=-0.004 Sum_probs=43.8
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeC-ChhHHHHHH---HhhcCCcEEEEEecCCCccceeecccccc
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWG-DPREKICEA---IDKIPLSCLVIGNRGLGKLKRLDFINIEL 144 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~---a~~~~~dliV~g~~~~~~~~~~~~Gs~a~ 144 (148)
...++....++..|++++..+..- ...+.+.++ +++.+++.||.++.+.+.+-.++-|.|.-
T Consensus 20 ~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~ 85 (169)
T 3trh_A 20 STMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIAAHTLK 85 (169)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhcCCC
Confidence 556677777888999999988752 334444454 55678999999988887776665555543
No 55
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=88.23 E-value=4.1 Score=26.95 Aligned_cols=42 Identities=7% Similarity=0.001 Sum_probs=27.7
Q ss_pred HHHhhhcCceEEEEEeeC--C---hhHHHHHHHhhcCCcEEEEEecC
Q 032042 89 NTVARQKQIVVVMKIFWG--D---PREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g--~---~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+.+++.|+++...-... + -.+++.+..++.++|+||+...+
T Consensus 44 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 90 (216)
T 2ywr_A 44 IERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFM 90 (216)
T ss_dssp HHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEEeCch
Confidence 456677888865421111 1 03678888899999999996654
No 56
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=88.19 E-value=5 Score=27.95 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=60.9
Q ss_pred EEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhH
Q 032042 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (148)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (148)
+|||++.........++.+..+... ..-++++++.+.... + .+. ++ +
T Consensus 22 ~iLV~sg~p~~~~~li~la~~lt~~-~G~ltv~~i~p~~~~-------------------~-----~l~-------~q-l 68 (294)
T 3g40_A 22 NLLVPVEDPRELMGTFDFLRDITYP-KGSVKLLGLAGNTDK-------------------E-----NLL-------SQ-L 68 (294)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHTT-TCEEEEEECC---CT-------------------T-----CHH-------HH-H
T ss_pred cEEEecCCchhhhhHHHHHHHhccC-ceeEEEEEEccCCCc-------------------c-----HHH-------HH-H
Confidence 7999998877888999999997754 567888888654320 0 001 12 3
Q ss_pred HHHHHHhhhcCceEEEEEee-CChhHHHHHHHhhcC-----CcEEEEEecCC
Q 032042 86 DIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIP-----LSCLVIGNRGL 131 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~-----~dliV~g~~~~ 131 (148)
+.+.+.+++.++...+.+.. .++.+++...++.++ ++.|++|....
T Consensus 69 ~~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~ 120 (294)
T 3g40_A 69 PSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPEN 120 (294)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSS
T ss_pred HHHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCC
Confidence 66788888889988877765 477777777666544 56778876643
No 57
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=88.00 E-value=4.2 Score=26.84 Aligned_cols=42 Identities=19% Similarity=0.076 Sum_probs=28.1
Q ss_pred HHHhhhcCceEEEEEee--CC---hhHHHHHHHhhcCCcEEEEEecC
Q 032042 89 NTVARQKQIVVVMKIFW--GD---PREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 89 ~~~~~~~~~~~~~~~~~--g~---~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+++++.|+++...-.. .+ -.+++.+..++.++|+||+...+
T Consensus 43 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 89 (212)
T 1jkx_A 43 LERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFM 89 (212)
T ss_dssp HHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSCC
T ss_pred HHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEeChh
Confidence 45667788886542111 11 13678889999999999997554
No 58
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=87.53 E-value=1.1 Score=29.68 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=33.4
Q ss_pred CCCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
|...++|++++.++..+-++++.+-.+.+ .+.+|+++-...
T Consensus 1 m~~~k~IllgvTGaiaa~k~~~ll~~L~~-~g~eV~vv~T~~ 41 (209)
T 3zqu_A 1 MSGPERITLAMTGASGAQYGLRLLDCLVQ-EEREVHFLISKA 41 (209)
T ss_dssp CCSCSEEEEEECSSSCHHHHHHHHHHHHH-TTCEEEEEECHH
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEECcc
Confidence 77789999999999999998888887665 488888776533
No 59
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=87.41 E-value=5.1 Score=27.19 Aligned_cols=38 Identities=5% Similarity=-0.116 Sum_probs=29.7
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
+.+++|++.+..+|...+..+..+... +..+.++|+..
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDt 78 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDT 78 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecC
Confidence 457999999999999999888886654 45677888744
No 60
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=87.36 E-value=0.76 Score=34.62 Aligned_cols=85 Identities=16% Similarity=0.082 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHHhhhc
Q 032042 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (148)
Q Consensus 16 ~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (148)
....||..|+..+...+.+|..++++++..... .... .+ ..-..+.+..+.+.+++.
T Consensus 51 ~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~-----------------~~~~---~r---~~FL~~sL~dL~~~L~~l 107 (506)
T 3umv_A 51 ADNWALLHAAGLAAASASPLAVAFALFPRPFLL-----------------SARR---RQ---LGFLLRGLRRLAADAAAR 107 (506)
T ss_dssp TTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGG-----------------GCCH---HH---HHHHHHHHHHHHHHHHHT
T ss_pred hhcHHHHHHHHhhhhcCCCEEEEEeccchhhcc-----------------CCCH---HH---HHHHHHHHHHHHHHHHHc
Confidence 455788888887776678899999998642100 0000 00 011245667777777777
Q ss_pred CceEEEEEeeCChhHHHHHHHhhcCCcEEEE
Q 032042 96 QIVVVMKIFWGDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 96 ~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~ 126 (148)
|... .+..|++.+. .+.+++.+++.|+.
T Consensus 108 G~~L--~v~~G~p~~v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 108 HLPF--FLFTGGPAEI-PALVQRLGASTLVA 135 (506)
T ss_dssp TCCE--EEESSCTTHH-HHHHHHTTCSEEEE
T ss_pred CCce--EEEecChHHH-HHHHHhcCCCEEEe
Confidence 7664 4456999988 99999999999987
No 61
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=87.09 E-value=0.84 Score=28.91 Aligned_cols=61 Identities=7% Similarity=0.028 Sum_probs=43.3
Q ss_pred hhHHHHHHHhhhcCceEEEEEee-CChhHHHHHH---HhhcCCcEEEEEecCCCccceeeccccc
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFW-GDPREKICEA---IDKIPLSCLVIGNRGLGKLKRLDFINIE 143 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~---a~~~~~dliV~g~~~~~~~~~~~~Gs~a 143 (148)
...++....++..|++++..+.. ....+.+.++ +++.+++.||.++.+.+.+-.++-|.|.
T Consensus 17 ~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 81 (163)
T 3ors_A 17 KIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTT 81 (163)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccC
Confidence 55667777788899999998875 2444555555 4556789999998888777666555444
No 62
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=87.03 E-value=0.89 Score=29.11 Aligned_cols=61 Identities=8% Similarity=0.060 Sum_probs=43.2
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeC-Chh---HHHHHHHhhcCCcEEEEEecCCCccceeeccccc
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWG-DPR---EKICEAIDKIPLSCLVIGNRGLGKLKRLDFINIE 143 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~---~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~a 143 (148)
...+++...++..|++++..+..- ... ..+.+.+++.+++.||.++.+.+.+-.++-|.|.
T Consensus 21 ~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 85 (174)
T 3lp6_A 21 PVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAATP 85 (174)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhccC
Confidence 556677777888999999988752 334 4444446667899999998888777666555443
No 63
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=86.95 E-value=1.7 Score=28.00 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=44.1
Q ss_pred hhHHHHHHHhhhcCceEEEEEee-CChhHHHHHHHh---hcCCcEEEEEecCCCccceeeccccc
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFW-GDPREKICEAID---KIPLSCLVIGNRGLGKLKRLDFINIE 143 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~Gs~a 143 (148)
...+++...++..|++++..+.. ....+.+.++++ +.+++.||.++.+.+.+-.++-|.|.
T Consensus 35 ~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 99 (182)
T 1u11_A 35 ETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTR 99 (182)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHhccC
Confidence 55667777788899999998875 344555566654 45689999999888877666655554
No 64
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=86.94 E-value=6.1 Score=27.58 Aligned_cols=96 Identities=11% Similarity=-0.003 Sum_probs=60.0
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhccc------------------CCCEEEEEEEecCCCCCccccccccCCCCCCcCCCC
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVR------------------NGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAE 66 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~------------------~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (148)
.+|+|++.+..+|.-.+..+...... .+.++.++|+.....
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~--------------------- 112 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEET--------------------- 112 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTC---------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCC---------------------
Confidence 47999999999998888877764311 135577777753211
Q ss_pred CchhHHHHhhcCCCChhhHHHHHHHhhhcCceEEEEEee----CChhHHHHHHHhh-cCCcEEEEEecCCCccc
Q 032042 67 FSEPTIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFW----GDPREKICEAIDK-IPLSCLVIGNRGLGKLK 135 (148)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~I~~~a~~-~~~dliV~g~~~~~~~~ 135 (148)
..+..+.+.+.++..|+++...... ....+.+.++.+. -..+.|++|.|......
T Consensus 113 --------------fpet~~fv~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdds~~ 172 (306)
T 2wsi_A 113 --------------FPTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTDPFG 172 (306)
T ss_dssp --------------CHHHHHHHHHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCSSSC
T ss_pred --------------CHHHHHHHHHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEecccccc
Confidence 1244555666666677775443211 1334566666665 36789999998765543
No 65
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=86.76 E-value=3.2 Score=28.85 Aligned_cols=39 Identities=10% Similarity=-0.066 Sum_probs=22.9
Q ss_pred hhhcCceEEEEEee-CC---hhHHHHHHHhhcCCcEEEEEecC
Q 032042 92 ARQKQIVVVMKIFW-GD---PREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 92 ~~~~~~~~~~~~~~-g~---~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+++.|+++...-.. .+ -.+.+.+..++.++|+||+...+
T Consensus 134 A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~ 176 (288)
T 3obi_A 134 FDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYM 176 (288)
T ss_dssp TTTTTCCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEEESSCC
T ss_pred HHHcCCCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEEhhhhh
Confidence 44567765442111 11 12467788888888888886554
No 66
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=86.58 E-value=1.9 Score=27.23 Aligned_cols=61 Identities=7% Similarity=-0.007 Sum_probs=43.0
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeC-ChhHHHHHHH---hhc-CCcEEEEEecCCCccceeeccccc
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAI---DKI-PLSCLVIGNRGLGKLKRLDFINIE 143 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a---~~~-~~dliV~g~~~~~~~~~~~~Gs~a 143 (148)
...++....++..|++++..+..- ...+.+.+++ ++. +++.||.++.+.+.+-.++-|.|.
T Consensus 16 ~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~t~ 81 (159)
T 3rg8_A 16 GHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGFVK 81 (159)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhccC
Confidence 556677777888999999988753 4455555655 333 689999998888777666555443
No 67
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=86.56 E-value=0.99 Score=29.13 Aligned_cols=61 Identities=10% Similarity=0.133 Sum_probs=43.3
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeC-ChhHHHHHH---HhhcCCcEEEEEecCCCccceeeccccc
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWG-DPREKICEA---IDKIPLSCLVIGNRGLGKLKRLDFINIE 143 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~---a~~~~~dliV~g~~~~~~~~~~~~Gs~a 143 (148)
...+++...++..|++++..+..- ...+.+.++ +++.+++.||.++.+.+.+-.++-|.|.
T Consensus 27 ~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 91 (183)
T 1o4v_A 27 PVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITH 91 (183)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhccC
Confidence 556677777888999999988752 344445555 4456789999999888877666555544
No 68
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=86.38 E-value=4.6 Score=28.45 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=28.3
Q ss_pred HHHHhhhcCceEEEEEeeCCh-hHHHHHHHhhcCCcEEEEEecC
Q 032042 88 VNTVARQKQIVVVMKIFWGDP-REKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~-~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+.+.+.+.|+++.. ..+. ..++.+..++.++|+||+...+
T Consensus 55 v~~~A~~~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~y~ 95 (318)
T 3q0i_A 55 VKTLALEHNVPVYQ---PENFKSDESKQQLAALNADLMVVVAYG 95 (318)
T ss_dssp HHHHHHHTTCCEEC---CSCSCSHHHHHHHHTTCCSEEEESSCC
T ss_pred HHHHHHHcCCCEEc---cCcCCCHHHHHHHHhcCCCEEEEeCcc
Confidence 56667778988632 1121 3578888999999999997665
No 69
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=86.26 E-value=5.7 Score=26.56 Aligned_cols=42 Identities=7% Similarity=-0.036 Sum_probs=27.8
Q ss_pred HHHhhhcCceEEEEEeeC--C---hhHHHHHHHhhcCCcEEEEEecC
Q 032042 89 NTVARQKQIVVVMKIFWG--D---PREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g--~---~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+++++.|+++...-... + -.+++.+..++.++|+||+...+
T Consensus 65 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 111 (229)
T 3auf_A 65 LERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYM 111 (229)
T ss_dssp HHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEEcChh
Confidence 456677888865421111 1 13678888899999999997654
No 70
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=85.24 E-value=1.4 Score=25.14 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=24.4
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
++.+..++...+..|+.+...-......+.|.+..+++++.++|+-
T Consensus 12 eetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvv 57 (134)
T 2l69_A 12 EETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVV 57 (134)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 3455556666666666555433222334555556666665555543
No 71
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=84.51 E-value=3.1 Score=31.54 Aligned_cols=98 Identities=11% Similarity=0.042 Sum_probs=62.8
Q ss_pred EEEEEe--cCCHhHHHHHHHHHhhccc--CCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCC
Q 032042 6 RVGVAV--DFSACSKKALQWAADNVVR--NGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (148)
Q Consensus 6 ~ILv~~--d~s~~s~~al~~a~~la~~--~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
.+|+=+ |..-....+|..|+..+.. .+.+|..++++++..... . + ... . .....
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~-----------~--~---~~~---~---r~~Fl 87 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDW-----------M--Q---VGA---N---RWRFL 87 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGC-----------T--T---SCH---H---HHHHH
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcc-----------c--C---CCH---H---HHHHH
Confidence 435544 4444566788888876654 467799999998643110 0 0 000 0 00112
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
.+.+..+.+.+++.|..+.+ ..|++.+.|.+.+++.+++.|+.-
T Consensus 88 ~~sL~~L~~~L~~~G~~L~v--~~g~~~~~l~~l~~~~~~~~v~~~ 131 (543)
T 2wq7_A 88 QQTLEDLDNQLRKLNSRLFV--VRGKPAEVFPRIFKSWRVEMLTFE 131 (543)
T ss_dssp HHHHHHHHHHHHHTTCCCEE--EESCHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEE--EeCCHHHHHHHHHHHcCCCEEEEe
Confidence 45566777777777876544 458999999999999999988885
No 72
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=84.10 E-value=3.1 Score=25.90 Aligned_cols=49 Identities=12% Similarity=0.065 Sum_probs=32.4
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCC-hhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGD-PREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
++..+.+.+.+...|++++..-.... ....+.....+ +|.||+|+....
T Consensus 19 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~d~ii~Gspty~ 68 (159)
T 3fni_A 19 DRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGR--CTGLVIGMSPAA 68 (159)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHT--EEEEEEECCBTT
T ss_pred HHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHh--CCEEEEEcCcCC
Confidence 56667777777777887665443333 34555554444 899999998765
No 73
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=83.59 E-value=1.4 Score=28.38 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=31.2
Q ss_pred CCCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
|+ +||++++.++..+-++++.+..+.+ .+.+|.++-...
T Consensus 1 ~~--k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T~~ 39 (181)
T 1g63_A 1 MY--GKLLICATASINVININHYIVELKQ-HFDEVNILFSPS 39 (181)
T ss_dssp CC--CCEEEEECSCGGGGGHHHHHHHHTT-TSSCEEEEECGG
T ss_pred CC--CEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEchh
Confidence 55 8999999999988899988888755 478887776544
No 74
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=83.40 E-value=3.8 Score=25.51 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=31.9
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
++..+.+.+.+...|++++..-........+...+.+ +|.||+|+...+
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~d~ii~Gspty~ 63 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSS--ARGIVLGTPPSQ 63 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHH--CSEEEEECCBSS
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHh--CCEEEEEcCCcC
Confidence 5666677777777788766544333334455544444 899999998764
No 75
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=81.97 E-value=8.7 Score=25.27 Aligned_cols=43 Identities=7% Similarity=0.007 Sum_probs=28.1
Q ss_pred HHHHhhhcCceEEEEEee--CCh---hHHHHHHHhhcCCcEEEEEecC
Q 032042 88 VNTVARQKQIVVVMKIFW--GDP---REKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~--g~~---~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..+++.+.|+++...-.. .+. .+++.+..++.++|+||+...+
T Consensus 45 v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~ 92 (212)
T 3av3_A 45 VIERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYM 92 (212)
T ss_dssp HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEchhh
Confidence 345567788886542111 111 3478888899999999997554
No 76
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=81.71 E-value=5.8 Score=27.52 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=15.6
Q ss_pred HHHHHHHhhcCCcEEEEEecC
Q 032042 110 EKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 110 ~~I~~~a~~~~~dliV~g~~~ 130 (148)
..+.+..++.++|+||+...+
T Consensus 155 ~~~~~~l~~~~~Dlivlagym 175 (287)
T 3nrb_A 155 SQIKNIVTQSQADLIVLARYM 175 (287)
T ss_dssp HHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHHHHhCCCEEEhhhhh
Confidence 467777888888888886554
No 77
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=81.68 E-value=8.4 Score=24.92 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=28.5
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecC
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~ 43 (148)
.-++++|++.+.-+|..++..+... +.++..+|+...
T Consensus 2 ~~~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~ 38 (219)
T 3bl5_A 2 KKEKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYN 38 (219)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCCCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCC
Confidence 3578999999999998888877663 367888888753
No 78
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=80.99 E-value=7.5 Score=29.01 Aligned_cols=103 Identities=11% Similarity=0.064 Sum_probs=61.0
Q ss_pred CCccEEEEEe--cCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCC
Q 032042 2 DGTRRVGVAV--DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAK 79 (148)
Q Consensus 2 ~~~~~ILv~~--d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
|+.+.+|+=+ |..-....+|..|+. .+.++..|+++++..... ..... + .... .+ ..
T Consensus 3 m~~~~~l~WfrrDLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~--------~~~~~-~--~~~~---~r---~~ 61 (489)
T 1np7_A 3 HVPPTVLVWFRNDLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQ--------THQGF-A--KTGP---WR---SN 61 (489)
T ss_dssp CCCCEEEEEESSCCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSB--------CTTSC-B--SSCH---HH---HH
T ss_pred CCCCcEEEEeCCCCCcchHHHHHHHHh----cCCCEEEEEEECchhhcc--------ccccc-C--CCCH---HH---HH
Confidence 3334455544 444456677877765 245788899988643210 00000 0 0000 00 01
Q ss_pred CChhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 80 PDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
...+.+..+.+.+++.|..+.+ ..|++.+.|.+.+++.+++.|+.-
T Consensus 62 Fl~~sL~~L~~~L~~~G~~L~v--~~g~~~~~l~~l~~~~~~~~V~~~ 107 (489)
T 1np7_A 62 FLQQSVQNLAESLQKVGNKLLV--TTGLPEQVIPQIAKQINAKTIYYH 107 (489)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEE--EESCHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCcEEE--EECCHHHHHHHHHHHcCCCEEEEe
Confidence 2245667777777777877544 458999999999999999988885
No 79
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=80.74 E-value=2.9 Score=26.82 Aligned_cols=35 Identities=11% Similarity=0.003 Sum_probs=28.1
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEE
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTV 40 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v 40 (148)
+||++++.++..+-++++.+-.+.+ .+.+|+++-.
T Consensus 6 k~IllgvTGs~aa~k~~~ll~~L~~-~g~~V~vv~T 40 (175)
T 3qjg_A 6 ENVLICLCGSVNSINISHYIIELKS-KFDEVNVIAS 40 (175)
T ss_dssp CEEEEEECSSGGGGGHHHHHHHHTT-TCSEEEEEEC
T ss_pred CEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEEC
Confidence 8999999999988888888777654 5788777654
No 80
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=80.60 E-value=16 Score=27.40 Aligned_cols=34 Identities=26% Similarity=0.072 Sum_probs=28.2
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
+++++++.+.-+|.-++..+... +.++.++|+..
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~ 243 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDH 243 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEEC
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeC
Confidence 68999999999988888777764 68899999854
No 81
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=79.09 E-value=16 Score=26.58 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=28.3
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
+++++++.+.-+|.-++.++... ++.++..+|+..
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g~~V~av~vd~ 35 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTADI 35 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEES
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hCCcEEEEEEeC
Confidence 47999999999999888888653 367888888865
No 82
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=78.10 E-value=17 Score=26.43 Aligned_cols=35 Identities=17% Similarity=-0.011 Sum_probs=28.2
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
..++++++.+.-+|.-++..+.. .+.++..+|+..
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeC
Confidence 46899999998888888777765 368899998864
No 83
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=77.46 E-value=11 Score=23.99 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=31.0
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh--cCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliV~g~~~~~ 132 (148)
......+.+.+.+.|+++......+|-.+.|.+..++ ..+|+||+ +.|-|
T Consensus 22 DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVit-tGG~g 73 (172)
T 3kbq_A 22 NTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVS-SGGLG 73 (172)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEE-ESCCS
T ss_pred eHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEE-cCCCc
Confidence 4556677888888999877665555554444443322 13899887 34444
No 84
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=76.74 E-value=11 Score=23.75 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=28.5
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh----cCCcEEEE
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK----IPLSCLVI 126 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~----~~~dliV~ 126 (148)
......+.+.+++.|+++......+|-.+.|.+..++ .++|+||+
T Consensus 30 Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVit 78 (169)
T 1y5e_A 30 DKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLT 78 (169)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEE
T ss_pred cChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3455567777888898876655555555554444332 36998887
No 85
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=76.67 E-value=7.3 Score=23.60 Aligned_cols=45 Identities=13% Similarity=0.031 Sum_probs=33.4
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+..+...++..|+++... -...|.+.+++.+++.++|+|.+.+..
T Consensus 20 ~~~v~~~l~~~G~~Vi~l-G~~~p~e~~v~~a~~~~~d~v~lS~~~ 64 (137)
T 1ccw_A 20 NKILDHAFTNAGFNVVNI-GVLSPQELFIKAAIETKADAILVSSLY 64 (137)
T ss_dssp HHHHHHHHHHTTCEEEEE-EEEECHHHHHHHHHHHTCSEEEEEECS
T ss_pred HHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHhcCCCEEEEEecC
Confidence 345666777788886532 224678999999999999999997654
No 86
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=76.29 E-value=3.2 Score=27.04 Aligned_cols=38 Identities=8% Similarity=-0.130 Sum_probs=30.0
Q ss_pred CCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEE
Q 032042 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTV 40 (148)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v 40 (148)
+..++|++++.++..+-++.+.+-.+.+ .+.+|.++-.
T Consensus 6 l~~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T 43 (194)
T 1p3y_1 6 LKDKKLLIGICGSISSVGISSYLLYFKS-FFKEIRVVMT 43 (194)
T ss_dssp GGGCEEEEEECSCGGGGGTHHHHHHHTT-TSSEEEEEEC
T ss_pred cCCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEc
Confidence 4458999999999988888888877654 5888877654
No 87
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=75.98 E-value=19 Score=25.86 Aligned_cols=36 Identities=17% Similarity=0.035 Sum_probs=28.5
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecC
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~ 43 (148)
.++|+|++.+.-+|.-++..+.+ .+.+|..+|+...
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~ 44 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMKNW 44 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEECC
Confidence 46899999999888888777665 3688999988653
No 88
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=75.04 E-value=9.1 Score=28.92 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=27.6
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
+++++++.+.-+|.-++..+... .+.+++++|+..
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd~ 265 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVDT 265 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEECC
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEecc
Confidence 68999999998888887777664 346789999854
No 89
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=75.01 E-value=11 Score=23.50 Aligned_cols=44 Identities=14% Similarity=0.004 Sum_probs=27.6
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh----cCCcEEEE
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK----IPLSCLVI 126 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~----~~~dliV~ 126 (148)
..-..+.+.+++.|+++.......|-.+.|.+..++ .++|+||+
T Consensus 21 ~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVit 68 (164)
T 2is8_A 21 TTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILT 68 (164)
T ss_dssp CHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred chHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 445567777888898876655555544444444332 26998887
No 90
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=74.08 E-value=14 Score=23.31 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=30.2
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHH----hhcCCcEEEE
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAI----DKIPLSCLVI 126 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a----~~~~~dliV~ 126 (148)
..-..+.+.+.+.|+++......+|-.+.|.+.. ...++|+||.
T Consensus 40 ~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVit 87 (178)
T 3iwt_A 40 ESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIS 87 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEE
T ss_pred chHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 4455677888889999777666666555555443 3456898887
No 91
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=73.85 E-value=10 Score=21.58 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=26.6
Q ss_pred ChhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh
Q 032042 81 DPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK 118 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~ 118 (148)
.+..++++....+..|+++.......+-...+.+.+++
T Consensus 86 dqnrleefsrevrrrgfevrtvtspddfkkslerlire 123 (134)
T 2l69_A 86 DQNRLEEFSREVRRRGFEVRTVTSPDDFKKSLERLIRE 123 (134)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCceEEEecChHHHHHHHHHHHHH
Confidence 35677788888888899888766544555666666665
No 92
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=73.81 E-value=6.7 Score=25.39 Aligned_cols=35 Identities=6% Similarity=-0.064 Sum_probs=28.7
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEE
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTV 40 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v 40 (148)
++|++++.++..+-++.+.+-.+.+. +.+|.++-.
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~T 36 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVIS 36 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEEC
Confidence 79999999998888888888887554 888877654
No 93
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=73.17 E-value=18 Score=24.26 Aligned_cols=34 Identities=6% Similarity=0.030 Sum_probs=25.5
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
.+|+|++.+..+|...+..+.... ..+.++|+..
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~idt 79 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDT 79 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEECCC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEecC
Confidence 479999999989988888887754 3466666643
No 94
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=72.54 E-value=4.5 Score=30.72 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=60.7
Q ss_pred CCCccEEEEEe--cCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcC
Q 032042 1 MDGTRRVGVAV--DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA 78 (148)
Q Consensus 1 m~~~~~ILv~~--d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
|++.+.+|+=. |..=....||..|+. .+.+|..|+++++......+ ..-..|. ..... .+ .
T Consensus 1 ~~~~~~~lvWFRrDLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~--~~~~~g~-----~~~g~---~r---~ 63 (537)
T 3fy4_A 1 MATGSGSLIWFRKGLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDP--SAFSPGS-----SRAGV---NR---I 63 (537)
T ss_dssp ---CCEEEEEESSCCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCT--TSSSSBC-----SSCBH---HH---H
T ss_pred CCCCCcEEEEeCCCcccchhHHHHHHHh----cCCCEEEEEEeChhhhcccc--ccccccc-----ccCCH---HH---H
Confidence 55455555544 444456677777765 35679999999863211000 0000000 00000 11 0
Q ss_pred CCChhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 79 KPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
....+.+..+.+.+++.|.... +..|++.+.|.+.+++.+++-|+.-
T Consensus 64 ~Fl~~sL~~L~~~L~~~G~~L~--v~~G~~~~vl~~L~~~~~~~~V~~n 110 (537)
T 3fy4_A 64 RFLLESLKDLDSSLKKLGSRLL--VFKGEPGEVLVRCLQEWKVKRLCFE 110 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCE--EEESCHHHHHHHHHTTSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCceE--EEECCHHHHHHHHHHHcCCCEEEEe
Confidence 1124566677777777776643 4458999999999999999998884
No 95
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=72.16 E-value=14 Score=23.84 Aligned_cols=49 Identities=6% Similarity=-0.134 Sum_probs=34.2
Q ss_pred hhhHHHHHHHhhhcCceEEEEEee-CChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
+.+.+.+.+.+++.|.+++..-.. ++..+.+.+...+ +|.||++++-..
T Consensus 33 ~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~--AD~iV~~~P~y~ 82 (204)
T 2amj_A 33 DTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLW--ADVVIWQMPGWW 82 (204)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHH--CSEEEEEEECBT
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHh--CCEEEEECCccc
Confidence 455666777776667777765544 3446677777777 999999987644
No 96
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=71.95 E-value=2.4 Score=29.51 Aligned_cols=82 Identities=15% Similarity=-0.018 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHHhhhc
Q 032042 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (148)
Q Consensus 16 ~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (148)
+..-++-.|..+..+.++++.+..|++... ..+ .+++.++.+.+.++-
T Consensus 177 Ng~LmlllAylL~~nW~A~I~L~~vV~de~--------------------------a~~-----~a~~~l~~Lv~~~Ri- 224 (294)
T 3g40_A 177 NMDLALLIAYKLKSNWKASLSFMTFAPTAI--------------------------QAQ-----AAENFLQSLAELARI- 224 (294)
T ss_dssp TTHHHHHHHHHHHHHHTCEEEEEEECSSHH--------------------------HHH-----HHHHHHHHHHHHHTC-
T ss_pred chhHHHHHHHHHhhCcCCeEEEEEecCCHH--------------------------HHH-----HHHHHHHHHHHHhcC-
Confidence 445566666666666799999999977532 111 123444555554432
Q ss_pred CceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCcc
Q 032042 96 QIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKL 134 (148)
Q Consensus 96 ~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~ 134 (148)
+.... ++. .+...|+..+ -++||+++|-...-.+
T Consensus 225 ~a~~~--vv~-~~F~~il~~s--~~ADL~flGl~~~~df 258 (294)
T 3g40_A 225 PNVKM--QVL-RENPIKSSKL--PFASLHIFSLDPNPDL 258 (294)
T ss_dssp CSCEE--EEE-SSCTTTSSSC--CCCSEEEEECCSSCCH
T ss_pred CceEE--Eec-CchHHHHhhC--cCCCEEEEcCCCCCcH
Confidence 33332 333 6666666665 4599999998765543
No 97
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=71.15 E-value=2.9 Score=31.73 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHHhhhc
Q 032042 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (148)
Q Consensus 16 ~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (148)
....||..|+..+. .+.+|..|+++++..... . .... .+ ..-..+.+..+.+.+++.
T Consensus 17 ~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~-----------~-----~~~~---~r---~~Fl~~sL~~L~~~L~~~ 73 (538)
T 3tvs_A 17 HDNPALLAALADKD-QGIALIPVFIFDGESAGT-----------K-----NVGY---NR---MRFLLDSLQDIDDQLQAA 73 (538)
T ss_dssp SSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCS-----------T-----TCCH---HH---HHHHHHHHHHHHHHGGGS
T ss_pred hhhHHHHHHHHhCC-CCCCEEEEEecChhhhcc-----------C-----CCCH---HH---HHHHHHHHHHHHHHHHHh
Confidence 44567777776553 455899999998643210 0 0000 00 011245667777777776
Q ss_pred ---CceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 96 ---QIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 96 ---~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
|... .+..|++.+.|.+.+++.+++.|+.-
T Consensus 74 ~~~G~~L--~v~~G~~~~vl~~L~~~~~a~~V~~n 106 (538)
T 3tvs_A 74 TDGRGRL--LVFEGEPAYIFRRLHEQVRLHRICIE 106 (538)
T ss_dssp CSSSSCC--EEEESCHHHHHHHHHHHHCEEEECEE
T ss_pred hcCCCeE--EEEeCCHHHHHHHHHHHcCCCEEEEc
Confidence 6654 34469999999999999999998873
No 98
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=71.08 E-value=9.5 Score=23.83 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=31.1
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+..+...++..|+++.. .-...|.+.+++.+++.++|+|.+....
T Consensus 35 ~~~va~~l~~~G~eVi~-lG~~~p~e~lv~aa~~~~~diV~lS~~~ 79 (161)
T 2yxb_A 35 AKVVARALRDAGFEVVY-TGLRQTPEQVAMAAVQEDVDVIGVSILN 79 (161)
T ss_dssp HHHHHHHHHHTTCEEEC-CCSBCCHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHhcCCCEEEEEeec
Confidence 34455666777777543 1123678889999999999999987654
No 99
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=70.70 E-value=26 Score=24.93 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=30.0
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
++..+.+.+.+.+.|++++..-........+.+...+ +|.||+|+...+
T Consensus 271 ~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~--~d~iiigsP~y~ 319 (404)
T 2ohh_A 271 RKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILE--SGAIALGAPTIY 319 (404)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHT--CSEEEEECCEET
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHH--CCEEEEECcccc
Confidence 4556666666666677665544333334445454544 999999988643
No 100
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=70.19 E-value=6 Score=29.52 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=55.2
Q ss_pred cCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHH
Q 032042 12 DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (148)
Q Consensus 12 d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (148)
|..-....+|..|+... .+|..++++++.... .. .... .+ .....+.+..+.+.
T Consensus 12 DLRl~Dn~aL~~A~~~~----~~v~~vfi~dp~~~~-----------~~-----~~~~---~r---~~fl~~sL~~L~~~ 65 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQS----AQLIGLFCLDPQILQ-----------SA-----DMAP---AR---VAYLQGCLQELQQR 65 (484)
T ss_dssp CCCSSSCHHHHHHHHHC----SCEEEEEEECHHHHT-----------CT-----TCCH---HH---HHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHhcC----CCEEEEEEEcchhhc-----------CC-----CCCH---HH---HHHHHHHHHHHHHH
Confidence 44335566777777632 268888888763210 00 0000 00 01124556677777
Q ss_pred hhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 92 ARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 92 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
+++.|..+.+ ..|++.+.|.+.+++.+++.|+.-
T Consensus 66 L~~~G~~L~v--~~g~~~~~l~~l~~~~~~~~v~~~ 99 (484)
T 1owl_A 66 YQQAGSRLLL--LQGDPQHLIPQLAQQLQAEAVYWN 99 (484)
T ss_dssp HHHHTSCEEE--EESCHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHCCCeEEE--EeCCHHHHHHHHHHHcCCCEEEEe
Confidence 7777877544 458999999999999999998883
No 101
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=70.14 E-value=22 Score=23.90 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=53.6
Q ss_pred CCCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCC
Q 032042 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
|.+.+++++.+.+.-+|..++-.+.. .+.+|..++...+..... .. .+
T Consensus 1 ~~~~MKvvvl~SGGkDSs~al~~l~~----~G~eV~~L~~~~~~~~~s-----------~~-----------~h------ 48 (237)
T 3rjz_A 1 MVGLADVAVLYSGGKDSNYALYWAIK----NRFSVKFLVTMVSENEES-----------YM-----------YH------ 48 (237)
T ss_dssp --CCSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEEECC------------------------------------
T ss_pred CCCCCEEEEEecCcHHHHHHHHHHHH----cCCeEEEEEEEcCCCCCc-----------cc-----------cC------
Confidence 55557899999999888877766554 567887776544321000 00 00
Q ss_pred ChhhHHHHHHHhhhcCceEEEEEeeCC---hhHHHHHHHhhcCCcEEEEEecC
Q 032042 81 DPETLDIVNTVARQKQIVVVMKIFWGD---PREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
....+.+...+...|++....-..+. -.+.+.+..++.+++-+|.|.--
T Consensus 49 -~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi~ 100 (237)
T 3rjz_A 49 -TINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGALA 100 (237)
T ss_dssp -CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC---
T ss_pred -CccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCcc
Confidence 01112244456666887655444432 35667777777788999888654
No 102
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=70.04 E-value=17 Score=22.71 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=24.3
Q ss_pred hhHHHHHHH----hhhcCceEEEEEeeCChhHHHHHHHhh---cCCcEEEE
Q 032042 83 ETLDIVNTV----ARQKQIVVVMKIFWGDPREKICEAIDK---IPLSCLVI 126 (148)
Q Consensus 83 ~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dliV~ 126 (148)
..-..+.+. +++.|+++......+|-.+.|.+..++ .++|+||.
T Consensus 25 ~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVit 75 (167)
T 2g2c_A 25 KALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIIT 75 (167)
T ss_dssp CHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 344456666 777788866555455555555444333 25999887
No 103
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=69.27 E-value=9.2 Score=24.95 Aligned_cols=36 Identities=8% Similarity=-0.116 Sum_probs=29.1
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEE
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTV 40 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v 40 (148)
+||++++.++..+-++++.+-.+.+..+.+|+++-.
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~T 36 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMS 36 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEEC
Confidence 489999999998888888888876544888887754
No 104
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=69.08 E-value=32 Score=25.33 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=28.0
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
.++++|++.+.=+|.-++.|+.+ .|.+|+.+++..
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lke----~G~eViavt~d~ 48 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCE----KGFDVIAYVANV 48 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEES
T ss_pred cCCEEEEeCCcHHHHHHHHHHHH----CCCeEEEEEEEc
Confidence 37899999998888888888765 377888888854
No 105
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=68.43 E-value=27 Score=24.29 Aligned_cols=35 Identities=26% Similarity=0.130 Sum_probs=27.3
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
++++|++.|.-+|.-++..+... .+.++..+|+..
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---~g~~v~av~vd~ 55 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---IGDRLHAVFVNT 55 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEEC
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---hCCCEEEEEEcC
Confidence 58999999998888887777664 246788888864
No 106
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=67.35 E-value=22 Score=22.86 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=29.8
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh---cCCcEEEE
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK---IPLSCLVI 126 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dliV~ 126 (148)
...-..+.+.+++.|.++.......|-.+.|.+..++ .++|+||+
T Consensus 48 Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIt 95 (185)
T 3rfq_A 48 DHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVS 95 (185)
T ss_dssp CSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 4555667788888898877665555555555544332 46999887
No 107
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=67.27 E-value=21 Score=22.52 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=27.5
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHH----hhcCCcEEEE
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAI----DKIPLSCLVI 126 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a----~~~~~dliV~ 126 (148)
..-..+.+.+.+.|+++......+|-.+.|.+.. ++.++|+||+
T Consensus 28 ~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVit 75 (172)
T 1mkz_A 28 TSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLI 75 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEE
T ss_pred ccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 4445677778888988766555555444444433 3235998887
No 108
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=66.60 E-value=34 Score=24.72 Aligned_cols=93 Identities=9% Similarity=0.045 Sum_probs=53.2
Q ss_pred EEEEEecCCHhHHHHHHHHHhhcccCCC---------E-----EEEEEEecCCCCCccccccccCCCCCCcCCCCCchhH
Q 032042 6 RVGVAVDFSACSKKALQWAADNVVRNGD---------H-----LILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPT 71 (148)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~---------~-----v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (148)
+|-|.+.--++++...+.|..+.+..+. . =.++|+.-+..+..
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~s----------------------- 70 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTS----------------------- 70 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGG-----------------------
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchH-----------------------
Confidence 6777787777777777777776665442 0 24666643322211
Q ss_pred HHHhhcCCCChhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 72 IMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
++ ....+.+...+...++.+-.......-....++..++.++|.|+++..
T Consensus 71 e~--------~ttI~~I~~~a~~~gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 71 NI--------DSAINKIVKLADDKEVQAIVVSTDQAGLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp GH--------HHHHHHHHGGGGCTTEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESS
T ss_pred HH--------HHHHHHHHHHhhcCCCeEEEEECCCcchHHHHHHHHhcCCCEEEEecc
Confidence 00 123555666666666654433322222366678888889998887654
No 109
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=66.59 E-value=16 Score=24.60 Aligned_cols=49 Identities=10% Similarity=-0.215 Sum_probs=32.5
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCCh-----------hHHHHHHHhhcCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDP-----------REKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-----------~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
..+.+.+.+.+.+.|++++..-...-+ ...+.+.+.+ +|.||+++.-..
T Consensus 51 ~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~--AD~iI~~sP~Yn 110 (247)
T 2q62_A 51 RLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIW--SEGQVWVSPERH 110 (247)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHH--CSEEEEEEECSS
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHH--CCEEEEEeCCCC
Confidence 455666666666667776654332222 4667777777 999999998765
No 110
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=65.85 E-value=7.6 Score=28.60 Aligned_cols=63 Identities=8% Similarity=-0.014 Sum_probs=43.2
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeC-ChhH---HHHHHHhhcCC-cEEEEEecCCCccceeeccccccc
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWG-DPRE---KICEAIDKIPL-SCLVIGNRGLGKLKRLDFINIELL 145 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~---~I~~~a~~~~~-dliV~g~~~~~~~~~~~~Gs~a~~ 145 (148)
...+++...+...|+++++.+..- ...+ .+.+.++..++ +.||.++.+.+.+-.++-|.|.--
T Consensus 279 ~~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgvva~~t~~P 346 (425)
T 2h31_A 279 GHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAYP 346 (425)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhHHhccCCCC
Confidence 446677777888899999888742 3334 44444556778 689988888887777666655443
No 111
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=65.06 E-value=19 Score=25.62 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=26.3
Q ss_pred HHHHHHHhhhcCceEEEEEeeCCh----hHHHHHHHhhcCCcEEE-EE
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDP----REKICEAIDKIPLSCLV-IG 127 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~----~~~I~~~a~~~~~dliV-~g 127 (148)
.+.+.+.+.+.|+++...+..|++ .+.+.+.+++.++|+|| +|
T Consensus 47 ~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavG 94 (370)
T 1jq5_A 47 GHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVG 94 (370)
T ss_dssp HHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 455566666667776544444544 34556667777888777 44
No 112
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=64.97 E-value=24 Score=24.72 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=18.1
Q ss_pred hHHHHHHHhhcCCcEEEEEecC
Q 032042 109 REKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 109 ~~~I~~~a~~~~~dliV~g~~~ 130 (148)
...|.+.+++.++|+|++|...
T Consensus 75 a~~La~li~~~~pdlVL~g~ts 96 (315)
T 1efv_A 75 TPLILATQKQFNYTHICAGASA 96 (315)
T ss_dssp HHHHHHHHHHHCCSEEEEESSH
T ss_pred HHHHHHHHHhcCCCEEEEcCCC
Confidence 4677788888899999999754
No 113
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=64.91 E-value=34 Score=24.14 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=27.1
Q ss_pred HHHhhhcCceEEEEEee---CChhHHHHHHHhhcCCcEEEEEecC
Q 032042 89 NTVARQKQIVVVMKIFW---GDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 89 ~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+.+.+.|+++...-.. +....++++..++.++|++|+...+
T Consensus 65 ~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~ 109 (329)
T 2bw0_A 65 GLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAELNVLPFCS 109 (329)
T ss_dssp HHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSEEEESSCS
T ss_pred HHHHHHcCCCEEecCcccccccccHHHHHHHHhcCCCEEEEeehh
Confidence 34566778875442211 1123677888889999999997654
No 114
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=63.47 E-value=16 Score=23.68 Aligned_cols=44 Identities=14% Similarity=0.035 Sum_probs=31.7
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..+...++..|+++.. +-...|.+.+++.+++.++|+|.+....
T Consensus 106 ~~va~~l~~~G~~v~~-LG~~vp~~~l~~~~~~~~~d~v~lS~~~ 149 (210)
T 1y80_A 106 NLVAMMLESGGFTVYN-LGVDIEPGKFVEAVKKYQPDIVGMSALL 149 (210)
T ss_dssp HHHHHHHHHTTCEEEE-CCSSBCHHHHHHHHHHHCCSEEEEECCS
T ss_pred HHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 3455556667777543 2234678999999999999999997653
No 115
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=62.78 E-value=38 Score=24.01 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=29.3
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
++..+.+.+.+...|+.++..-........+.+...+ +|.||+|+...+
T Consensus 267 ~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~d~ii~gsp~~~ 315 (402)
T 1e5d_A 267 EKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISD--AGAVIVGSPTHN 315 (402)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHT--CSEEEEECCCBT
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHH--CCEEEEECCccC
Confidence 3445556666666677666544433334555554554 899999986544
No 116
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=62.70 E-value=14 Score=23.11 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=28.2
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh---cCCcEEEE
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK---IPLSCLVI 126 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dliV~ 126 (148)
...-..+.+.+++.|.++.......|- +.|.+..++ .++|+||+
T Consensus 26 Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVit 72 (164)
T 3pzy_A 26 DRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILT 72 (164)
T ss_dssp CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEE
T ss_pred eHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEE
Confidence 344556777777888876554444555 666655433 36999887
No 117
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=61.18 E-value=38 Score=24.08 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 15 ACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
..+++.+++|.++|++...+|+++|-..
T Consensus 144 ~~~eRiar~AF~~A~~rrkkvt~v~KaN 171 (336)
T 1wpw_A 144 FASERIAKVGLNFALRRRKKVTCVHKAN 171 (336)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEECCc
Confidence 4678999999999988878888887654
No 118
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=61.07 E-value=24 Score=23.44 Aligned_cols=58 Identities=9% Similarity=-0.000 Sum_probs=40.1
Q ss_pred HHHHHH---HhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeecccc
Q 032042 85 LDIVNT---VARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFINI 142 (148)
Q Consensus 85 ~~~~~~---~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs~ 142 (148)
..+..+ ..++.|..+-..+..++|.+.+..+.....+|+|.+.+-..+.-.+.|..+.
T Consensus 100 ~~~~i~~~~~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~ 160 (227)
T 1tqx_A 100 TERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDM 160 (227)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGG
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHH
Confidence 445555 6777888887777556788888777762249999888887775555554433
No 119
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=59.56 E-value=8.2 Score=22.05 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.0
Q ss_pred hhHHHHHHHhhcCCcEEEEEec
Q 032042 108 PREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 108 ~~~~I~~~a~~~~~dliV~g~~ 129 (148)
..+.|.+++++++++.||+|-+
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP 60 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLP 60 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeec
Confidence 4688899999999999999944
No 120
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=58.84 E-value=29 Score=23.44 Aligned_cols=45 Identities=22% Similarity=0.080 Sum_probs=33.5
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+..+...++..|+++...= ...|.+.+++.+++.++|+|.+....
T Consensus 140 ~~iva~~L~~~G~~Vi~LG-~~vp~e~l~~~~~~~~~d~V~lS~l~ 184 (258)
T 2i2x_B 140 KNIVTALLRANGYNVVDLG-RDVPAEEVLAAVQKEKPIMLTGTALM 184 (258)
T ss_dssp HHHHHHHHHHTTCEEEEEE-EECCSHHHHHHHHHHCCSEEEEECCC
T ss_pred HHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEEeec
Confidence 3445666777888865422 24789999999999999999997653
No 121
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=58.65 E-value=32 Score=21.77 Aligned_cols=43 Identities=12% Similarity=0.038 Sum_probs=24.1
Q ss_pred hhHHHHHHHhh---hcCceEEEEEeeCChhHHHHHHHhh----cCCcEEEE
Q 032042 83 ETLDIVNTVAR---QKQIVVVMKIFWGDPREKICEAIDK----IPLSCLVI 126 (148)
Q Consensus 83 ~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~I~~~a~~----~~~dliV~ 126 (148)
..-..+.+.++ +.|+++... ..+|-.+.|.+..++ .++|+||+
T Consensus 25 sn~~~l~~~l~~l~~~G~~v~~~-iv~Dd~~~I~~~l~~~~~~~~~DlVit 74 (178)
T 2pbq_A 25 ISGKAIIDYLKDVIITPFEVEYR-VIPDERDLIEKTLIELADEKGCSLILT 74 (178)
T ss_dssp HHHHHHHHHHHHHBCSCCEEEEE-EECSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred chHHHHHHHHHHHHhCCCEEEEE-EcCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 33444556555 778887433 444444444443332 26998887
No 122
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=58.63 E-value=12 Score=24.58 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=27.6
Q ss_pred CCccEEEEEecCCHhHHH-HHHHHHhhcccCCCEEEEEEEec
Q 032042 2 DGTRRVGVAVDFSACSKK-ALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~-al~~a~~la~~~~~~v~ll~v~~ 42 (148)
..-++|++++.++...-+ +++.+-.+.+ .|.+|.++-...
T Consensus 3 l~~k~IllgiTGsiaayk~~~~ll~~L~~-~g~eV~vv~T~~ 43 (207)
T 3mcu_A 3 LKGKRIGFGFTGSHCTYEEVMPHLEKLIA-EGAEVRPVVSYT 43 (207)
T ss_dssp CTTCEEEEEECSCGGGGTTSHHHHHHHHH-TTCEEEEEECC-
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHHHHHh-CCCEEEEEEehH
Confidence 445899999999876554 6666666544 478887765533
No 123
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=58.55 E-value=31 Score=21.56 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=16.8
Q ss_pred HHHHHHhhcCCcEEEEEecCCC
Q 032042 111 KICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 111 ~I~~~a~~~~~dliV~g~~~~~ 132 (148)
..++++++.++|.+|.|.+.-+
T Consensus 75 l~~~~~~~~~~~~~v~G~r~~~ 96 (162)
T 4f3r_A 75 LLVDFAKTHQANFILRGLRAVS 96 (162)
T ss_dssp CHHHHHHHTTCCEEEEEECSHH
T ss_pred hHHHHHHHcCCCEEEECCCchh
Confidence 3457888899999999976533
No 124
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=58.42 E-value=33 Score=22.64 Aligned_cols=49 Identities=10% Similarity=-0.060 Sum_probs=32.1
Q ss_pred hhhHHHHHHHhhhcCceEEEEEee-CChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
+.+.+.+.+.+.+.|.+++..-.. +...+...+..++ +|.||+++.-..
T Consensus 46 ~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~--aD~iv~~~P~y~ 95 (218)
T 3rpe_A 46 LTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLW--ADTIIYQMPAWW 95 (218)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHH--CSEEEEEEECBT
T ss_pred HHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHh--CCEEEEECChHh
Confidence 355666777776678877765544 3334455566666 999999987643
No 125
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=58.17 E-value=15 Score=24.10 Aligned_cols=39 Identities=21% Similarity=0.011 Sum_probs=28.7
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
.++|++++.++..+-++.+.+-.+.+..+.+|.++-...
T Consensus 19 ~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~T~~ 57 (206)
T 1qzu_A 19 KFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTER 57 (206)
T ss_dssp SEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEECTG
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEECHh
Confidence 479999999999888888888877552577777765433
No 126
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=57.86 E-value=29 Score=25.35 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=54.5
Q ss_pred cCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHH
Q 032042 12 DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (148)
Q Consensus 12 d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (148)
|..-....+|..|+.. + +|..++++++.. +. . .. .+- ....+.+..+.+.
T Consensus 11 DlRl~Dn~aL~~A~~~----~-~v~~vfi~d~~~--------~~----------~-~~---~r~---~fl~~sL~~l~~~ 60 (420)
T 2j07_A 11 DLRLHDHPALLEALAR----G-PVVGLVVLDPNN--------LK----------T-TP---RRR---AWFLENVRALREA 60 (420)
T ss_dssp CCCSTTCHHHHHHHTT----S-CEEEEEEECHHH--------HS----------S-CH---HHH---HHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHhC----C-CEEEEEEECCcc--------cc----------C-CH---HHH---HHHHHHHHHHHHH
Confidence 3333556777777652 2 788888887532 10 0 00 110 1124556677777
Q ss_pred hhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 92 ARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 92 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
+++.|+++.+ ..|++.+.|.+.+++.+++.|+.-
T Consensus 61 L~~~g~~l~~--~~g~~~~~l~~l~~~~~~~~v~~~ 94 (420)
T 2j07_A 61 YRARGGALWV--LEGLPWEKVPEAARRLKAKAVYAL 94 (420)
T ss_dssp HHHTTCCEEE--EESCHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHCCCeEEE--EeCCHHHHHHHHHHHcCCCEEEEe
Confidence 7777877544 458999999999999999999883
No 127
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=57.41 E-value=42 Score=22.80 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=63.3
Q ss_pred EEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhH
Q 032042 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (148)
Q Consensus 6 ~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (148)
..=|+..|-......++..+.+|+..+..|-. |+-.+. ..+.|-..+..+ .+++.... .-.+
T Consensus 25 SANIACGfHAGDp~~M~~Tv~lA~~~gV~IGA-HPgypD---------l~GFGRR~m~~s----~~el~~~v----~YQi 86 (252)
T 1xw8_A 25 SANIACGFHAGDAQIMQACVREAIKNGVAIGA-HPSFPD---------RENFGRSAMQLP----PETVYAQT----LYQI 86 (252)
T ss_dssp EEEEECSSSSCCHHHHHHHHHHHHHHTCEEEE-ECCCC----------------CCCCCC----HHHHHHHH----HHHH
T ss_pred hHHHhhcccCCCHHHHHHHHHHHHHcCCeeec-CCCCCc---------ccCCCCCCCCCC----HHHHHHHH----HHHH
Confidence 34467777667778888888888888876543 332221 111122111111 11222221 2334
Q ss_pred HHHHHHhhhcCceEEEEEe----------eCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 86 DIVNTVARQKQIVVVMKIF----------WGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~----------~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..+..+++..|.+++..-- ....+++|++.++..+++|+++|..+
T Consensus 87 GAL~a~a~~~G~~l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~g 141 (252)
T 1xw8_A 87 GALATIARAQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAG 141 (252)
T ss_dssp HHHHHHHHHTTCCEEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEETT
T ss_pred HHHHHHHHHcCCEeEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 5677778888888766431 12447999999999999999999665
No 128
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=57.33 E-value=17 Score=23.32 Aligned_cols=49 Identities=10% Similarity=-0.041 Sum_probs=29.0
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeC---------------------ChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWG---------------------DPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g---------------------~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
+++.+.+.+.+.+.|.+++..-... +....+.+...+ +|.||+|+.-..
T Consensus 21 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~--aD~ii~gsP~y~ 90 (211)
T 1ydg_A 21 YAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEW--AEAIVFSSPTRF 90 (211)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHH--CSEEEEEEEEET
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHH--CCEEEEEcCccc
Confidence 4556666666666777766654332 111233444444 899999987643
No 129
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=57.15 E-value=12 Score=25.28 Aligned_cols=53 Identities=8% Similarity=-0.089 Sum_probs=31.8
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeec
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDF 139 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~ 139 (148)
..+..+.+++.|..+-..+..+.|.+.+..+... +|+|.+.+...+.-.+.|.
T Consensus 123 ~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~--vD~VlvMsV~PGfgGQ~fi 175 (246)
T 3inp_A 123 IDRSLQLIKSFGIQAGLALNPATGIDCLKYVESN--IDRVLIMSVNPGFGGQKFI 175 (246)
T ss_dssp HHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGG--CSEEEEECSCTTC--CCCC
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhc--CCEEEEeeecCCCCCcccc
Confidence 3445555667777776665556777777666664 7888776655553333333
No 130
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=56.91 E-value=36 Score=21.84 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=26.2
Q ss_pred hhHHHHHHHhhh---cCceEEEEEeeCChhHHHHHHH----hhcCCcEEEE
Q 032042 83 ETLDIVNTVARQ---KQIVVVMKIFWGDPREKICEAI----DKIPLSCLVI 126 (148)
Q Consensus 83 ~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~I~~~a----~~~~~dliV~ 126 (148)
..-..+.+.+++ .|.++......+|-.+.|.+.. .+.++|+||+
T Consensus 34 ~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIt 84 (189)
T 1jlj_A 34 RSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILT 84 (189)
T ss_dssp HHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred hHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEE
Confidence 444556676766 6887665544455444444433 3236999887
No 131
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=56.69 E-value=15 Score=24.51 Aligned_cols=54 Identities=13% Similarity=-0.031 Sum_probs=36.2
Q ss_pred hHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeec
Q 032042 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDF 139 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~ 139 (148)
...++.+.+++.|..+-..+..++|.+.+..+... +|+|.+-+...+.-.+.|.
T Consensus 94 ~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~--~D~VlvmsV~pGfggQ~f~ 147 (231)
T 3ctl_A 94 QAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHK--ADKITVMTVDPGFAGQPFI 147 (231)
T ss_dssp THHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGG--CSEEEEESSCTTCSSCCCC
T ss_pred cHHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhc--CCEEEEeeeccCcCCcccc
Confidence 35666777778888877777556777777777664 8888766665554343343
No 132
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=56.33 E-value=25 Score=23.06 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=30.3
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEE
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~ 126 (148)
..+...++..|.++.. +-...|.+.|++.++++++|+|.+
T Consensus 110 ~iv~~~l~~~G~~Vi~-LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 110 RLVTTMLGANGFQIVD-LGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp HHHHHHHHHTSCEEEE-CCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHHHHCCCeEEE-cCCCCCHHHHHHHHHHcCCCEEEE
Confidence 3455667777887543 223478999999999999999999
No 133
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=55.89 E-value=36 Score=21.57 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=29.0
Q ss_pred ChhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHH----HhhcCCcEEEE
Q 032042 81 DPETLDIVNTVARQKQIVVVMKIFWGDPREKICEA----IDKIPLSCLVI 126 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~----a~~~~~dliV~ 126 (148)
.......+.+.+++.|.++.......|-.+.|.+. +++.++|+||+
T Consensus 38 ~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVit 87 (178)
T 2pjk_A 38 VDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIS 87 (178)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEE
T ss_pred eehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 34556667888888899866655445444444443 33335899887
No 134
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=55.27 E-value=21 Score=23.49 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.1
Q ss_pred HHHHHHHHhhcccCCCEEEEEEE
Q 032042 18 KKALQWAADNVVRNGDHLILVTV 40 (148)
Q Consensus 18 ~~al~~a~~la~~~~~~v~ll~v 40 (148)
...++.++++|...|++..++|.
T Consensus 75 ~~~~~~~i~~A~~lGa~~v~~~~ 97 (254)
T 3ayv_A 75 LRRLLFGLDRAAELGADRAVFHS 97 (254)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCEEEECC
Confidence 46788899999999999887774
No 135
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=54.78 E-value=42 Score=21.94 Aligned_cols=34 Identities=21% Similarity=0.086 Sum_probs=27.3
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
++++|++.+.-+|..++.++.... .+|..+|+..
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~----~~v~av~~~~ 36 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDY----DDVHCITFDY 36 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC----SEEEEEEEES
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC----CCEEEEEEEC
Confidence 689999999999988888877642 5788888764
No 136
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=54.12 E-value=41 Score=24.05 Aligned_cols=49 Identities=10% Similarity=-0.034 Sum_probs=29.3
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
++..+.+.+.+.+.|++++..-........+.+...+ +|.||+|+....
T Consensus 271 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~--~D~iiigsP~y~ 319 (414)
T 2q9u_A 271 HRMALALLDGARSTGCETVLLEMTSSDITKVALHTYD--SGAVAFASPTLN 319 (414)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHT--CSEEEEECCCBT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHh--CCEEEEEcCccC
Confidence 4555666666666676665544333223344444444 899999988754
No 137
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=54.07 E-value=14 Score=17.62 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=18.1
Q ss_pred EEEEEee-CChhHHHHHHHhhcCCcE
Q 032042 99 VVMKIFW-GDPREKICEAIDKIPLSC 123 (148)
Q Consensus 99 ~~~~~~~-g~~~~~I~~~a~~~~~dl 123 (148)
++.++.. .+-.++|++||++.+.|-
T Consensus 12 vslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 12 VSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eEEEEeeCCchhHHHHHHHHHccchh
Confidence 4555544 356899999999988774
No 138
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=53.88 E-value=37 Score=21.12 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=18.8
Q ss_pred CceEEEEEeeCChhHHHHHHHhh----cCCcEEEE
Q 032042 96 QIVVVMKIFWGDPREKICEAIDK----IPLSCLVI 126 (148)
Q Consensus 96 ~~~~~~~~~~g~~~~~I~~~a~~----~~~dliV~ 126 (148)
|+++.......|-.+.|.+..++ .++|+||+
T Consensus 43 G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVit 77 (167)
T 1uuy_A 43 GAKVVATAVVPDEVERIKDILQKWSDVDEMDLILT 77 (167)
T ss_dssp SEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 78766554445555555544433 36998887
No 139
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=53.63 E-value=18 Score=22.91 Aligned_cols=43 Identities=9% Similarity=-0.050 Sum_probs=28.9
Q ss_pred CCCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecC
Q 032042 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~ 43 (148)
|+..++||+......++..+++.+..-+...+.++.++.+.+.
T Consensus 1 M~~mmkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 1 MSCKPNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp --CCCEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred CCCCcEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 4444677776655446677888888877667888888877543
No 140
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=52.71 E-value=56 Score=22.84 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=28.8
Q ss_pred HHHHHhhhcCceEEEEEeeCCh-hHHHHHHHhhcCCcEEEEEecC
Q 032042 87 IVNTVARQKQIVVVMKIFWGDP-REKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~-~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+++.+.+.|+++.. ..+. ..++.+..++.++|+||+...+
T Consensus 49 ~v~~~A~~~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~~~ 90 (314)
T 3tqq_A 49 PVKEIARQNEIPIIQ---PFSLRDEVEQEKLIAMNADVMVVVAYG 90 (314)
T ss_dssp HHHHHHHHTTCCEEC---CSCSSSHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHcCCCEEC---cccCCCHHHHHHHHhcCCCEEEEcCcc
Confidence 366677778888532 1122 3478888999999999997665
No 141
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=52.61 E-value=45 Score=22.95 Aligned_cols=43 Identities=7% Similarity=0.056 Sum_probs=27.5
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeC-ChhHHHHHHHhhcCCcEEEE
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~ 126 (148)
+..+.+...+...+++++...... ..+..+.+.+.+ ++|+||+
T Consensus 26 ~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~ 69 (304)
T 3s40_A 26 TNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIV 69 (304)
T ss_dssp HHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEE
Confidence 445667777777888877765543 345555555543 7887766
No 142
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=52.47 E-value=32 Score=23.82 Aligned_cols=32 Identities=9% Similarity=-0.097 Sum_probs=22.4
Q ss_pred EEEEEecCCHh---HHHHHHHHHhhcccCCCEEEE
Q 032042 6 RVGVAVDFSAC---SKKALQWAADNVVRNGDHLIL 37 (148)
Q Consensus 6 ~ILv~~d~s~~---s~~al~~a~~la~~~~~~v~l 37 (148)
--|+.+.+.+. ....+++.++++...+.+|.+
T Consensus 27 g~l~iiGGgedk~~~~~i~~~~v~lagg~~~~I~~ 61 (291)
T 3en0_A 27 PAILIIGGAEDKVHGREILQTFWSRSGGNDAIIGI 61 (291)
T ss_dssp CCEEEECSSCCSSSCCHHHHHHHHHTTGGGCEEEE
T ss_pred ceEEEEECCCCccChHHHHHHHHHHcCCCCCeEEE
Confidence 44667776653 457899999999866666655
No 143
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=52.23 E-value=33 Score=23.64 Aligned_cols=49 Identities=4% Similarity=-0.216 Sum_probs=32.0
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCCh------------hHHHHHHHhhcCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDP------------REKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~------------~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
..+.+.+.+.+.+.|++++..-...-+ ...+.+.+.+ +|.||+++.-..
T Consensus 75 ~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~--ADgiV~aSP~Yn 135 (279)
T 2fzv_A 75 RLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEW--SEGQVWCSPERH 135 (279)
T ss_dssp HHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHH--CSEEEEEEEEET
T ss_pred HHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHH--CCeEEEEcCccc
Confidence 455666666666667776654322211 4567777777 999999998754
No 144
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=51.56 E-value=54 Score=22.27 Aligned_cols=109 Identities=10% Similarity=0.009 Sum_probs=65.8
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChh
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (148)
+...=|+..+.......++..+.+|+..+..|-. |+-.+. ..+.|-..+..+ .+++.... .-
T Consensus 28 VtSANIACGfHAGDp~~M~~tv~lA~~~gV~IGA-HPgypD---------l~GFGRR~m~~s----~~el~~~v----~Y 89 (250)
T 2dfa_A 28 VSSANLACGFHGGSPGRILEAVRLAKAHGVAVGA-HPGFPD---------LVGFGRREMALS----PEEVYADV----LY 89 (250)
T ss_dssp CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEE-ECCCSC---------TTTTTCSCCCCC----HHHHHHHH----HH
T ss_pred hhhhhhhccccCCCHHHHHHHHHHHHHcCCeEec-CCCCCc---------ccCCCCCCCCCC----HHHHHHHH----HH
Confidence 4455677888777788899999999988876654 332221 111122111111 11222221 23
Q ss_pred hHHHHHHHhhhcCceEEEEE-----e-----eCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 84 TLDIVNTVARQKQIVVVMKI-----F-----WGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-----~-----~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+..+...++..|.+++..- + ....+++|++.++..+++|+++|..+
T Consensus 90 QiGAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g 146 (250)
T 2dfa_A 90 QIGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLPG 146 (250)
T ss_dssp HHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 34556777777777655432 1 12457999999999999999999665
No 145
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=51.20 E-value=55 Score=22.29 Aligned_cols=109 Identities=11% Similarity=0.033 Sum_probs=67.7
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChh
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (148)
+...=|+..+.......++..+.+|+..+..|-. |+-.+. ..+.|-..+..+ .+++.... .-
T Consensus 28 VtSANIACGfHAGDp~~M~~tv~lA~~~gV~IGA-HPgypD---------l~GFGRR~m~~s----~~el~~~v----~Y 89 (255)
T 1v6t_A 28 ITSANVACGWHAGDPLVMRKTVRLAKENDVQVGA-HPGYPD---------LMGFGRRYMKLT----PEEARNYI----LY 89 (255)
T ss_dssp CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEE-ECCCSC---------TTTTTCSCCCCC----HHHHHHHH----HH
T ss_pred hhhhhhhccccCCCHHHHHHHHHHHHHcCCeEec-CCCCCc---------ccCCCCCCCCCC----HHHHHHHH----HH
Confidence 4455677888777788899999999988876644 332221 111122111111 11222221 23
Q ss_pred hHHHHHHHhhhcCceEEEEEe----------eCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 84 TLDIVNTVARQKQIVVVMKIF----------WGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+..+...++..|.+++..-- ....+++|++.++..+++|+++|..+
T Consensus 90 QiGAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g 146 (255)
T 1v6t_A 90 QVGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSN 146 (255)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEETT
T ss_pred HHHHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 345677778888888766431 12447999999999999999999665
No 146
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=50.80 E-value=63 Score=22.82 Aligned_cols=49 Identities=8% Similarity=0.036 Sum_probs=29.5
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
++..+.+.+.+...|++++..-........+.+...+ +|.||+|+...+
T Consensus 266 ~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~d~ii~g~p~y~ 314 (398)
T 1ycg_A 266 EKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILD--ARAVLVGSPTIN 314 (398)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHH--CSEEEEECCCBT
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH--CCEEEEECCccC
Confidence 3455556666666677666544433334555555555 899999986543
No 147
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=50.57 E-value=40 Score=22.17 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=16.0
Q ss_pred hHHHHHHHhhcCCcEEEEEecCCC
Q 032042 109 REKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 109 ~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
...+.+...+ +|.||+|++-..
T Consensus 70 ~~~~~~~l~~--AD~iI~~sP~y~ 91 (242)
T 1sqs_A 70 GGVIKKELLE--SDIIIISSPVYL 91 (242)
T ss_dssp HHHHHHHHHH--CSEEEEEEEECS
T ss_pred HHHHHHHHHH--CCEEEEEccccc
Confidence 3455566666 999999998754
No 148
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=50.50 E-value=24 Score=23.81 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=27.5
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
.+++++...+.|.++...+..|=-.+.+ ..+.+.++|.+|+|+.
T Consensus 182 I~~lr~~~~~~~~~~~I~VDGGI~~~ti-~~~~~aGAD~~V~GSa 225 (246)
T 3inp_A 182 AKEISKWISSTDRDILLEIDGGVNPYNI-AEIAVCGVNAFVAGSA 225 (246)
T ss_dssp HHHHHHHHHHHTSCCEEEEESSCCTTTH-HHHHTTTCCEEEESHH
T ss_pred HHHHHHHHHhcCCCeeEEEECCcCHHHH-HHHHHcCCCEEEEehH
Confidence 4445555555676666666545223444 4556679999999963
No 149
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=50.43 E-value=55 Score=24.72 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=20.8
Q ss_pred EeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 103 IFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 103 ~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+..+.-...+.+.+++.++||++-++++
T Consensus 421 v~~~~D~~~l~~~i~~~~pDLlig~s~~ 448 (523)
T 3u7q_B 421 VYIGKDLWHLRSLVFTDKPDFMIGNSYG 448 (523)
T ss_dssp EEESCCHHHHHHHHHHTCCSEEEECTTH
T ss_pred EEECCCHHHHHHHHHhcCCCEEEECccH
Confidence 4445456777788888889999888764
No 150
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=49.86 E-value=19 Score=22.85 Aligned_cols=40 Identities=15% Similarity=0.013 Sum_probs=31.6
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecC
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~ 43 (148)
+.+.++|.+..|..+...++. +..|+..|+++..+.-.+.
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~~-~~~ak~~g~~vI~IT~~~~ 151 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQA-IQAAHDREMLVVALTGRDG 151 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHHH-HHHHHHTTCEEEEEECTTC
T ss_pred CCCCEEEEEeCCCCCHHHHHH-HHHHHHCCCEEEEEECCCC
Confidence 346789999999998888874 4668889999988876543
No 151
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=49.73 E-value=70 Score=23.03 Aligned_cols=35 Identities=11% Similarity=-0.011 Sum_probs=27.5
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
.++|+|++.+.-+|.-++..+.+ .+.+|..+|+..
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~ 51 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKN 51 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEEc
Confidence 46899999998888877776655 378899998864
No 152
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=49.07 E-value=39 Score=23.94 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=26.7
Q ss_pred cEEEEEecCCHhHHHHHHHHHhh---cccCCCEEEEE
Q 032042 5 RRVGVAVDFSACSKKALQWAADN---VVRNGDHLILV 38 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~l---a~~~~~~v~ll 38 (148)
++|+++.|++....+|...+... ....+..+.++
T Consensus 207 ~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~ 243 (338)
T 1dd9_A 207 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFM 243 (338)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 68999999999999999988886 33446666554
No 153
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=49.01 E-value=17 Score=25.78 Aligned_cols=34 Identities=9% Similarity=0.195 Sum_probs=29.2
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEE
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILV 38 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll 38 (148)
++|+++.|++.....|...++......+..+.++
T Consensus 196 ~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~ 229 (329)
T 4edg_A 196 SNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVI 229 (329)
T ss_dssp SEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 6899999999999999999998888777776664
No 154
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=48.67 E-value=56 Score=22.81 Aligned_cols=44 Identities=7% Similarity=-0.175 Sum_probs=28.2
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeC-ChhHHHHHHHhhcCCcEEEE
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~ 126 (148)
+..+.+.+.++..|+++....... ..+..+.+.+...++|+||+
T Consensus 42 ~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv 86 (337)
T 2qv7_A 42 RELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIA 86 (337)
T ss_dssp HHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEE
Confidence 455677777888888877665443 34445555555567887766
No 155
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=48.10 E-value=24 Score=26.17 Aligned_cols=87 Identities=13% Similarity=0.118 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHHhhhc
Q 032042 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (148)
Q Consensus 16 ~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (148)
....||..|+.. ..+ +|..++++++..... + .... .+ .....+.+..+.+.+++.
T Consensus 14 ~DN~aL~~A~~~--~~~-~v~~vfi~dp~~~~~-----------~-----~~~~---~r---~~fl~~sL~~L~~~L~~~ 68 (471)
T 1dnp_A 14 HDNLALAAACRN--SSA-RVLALYIATPRQWAT-----------H-----NMSP---RQ---AELINAQLNGLQIALAEK 68 (471)
T ss_dssp TTCHHHHHHSSS--TTS-EEEEEEEECHHHHHH-----------T-----TCCH---HH---HHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHhC--CCC-CEEEEEEECchhhcc-----------C-----CCCH---HH---HHHHHHHHHHHHHHHHHC
Confidence 445677777653 123 899999988632100 0 0000 00 011245566777777777
Q ss_pred CceEEEEEe--eCChhHHHHHHHhhcCCcEEEEE
Q 032042 96 QIVVVMKIF--WGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 96 ~~~~~~~~~--~g~~~~~I~~~a~~~~~dliV~g 127 (148)
|..+.+... .|++.+.|.+.+++.+++.|+.-
T Consensus 69 G~~L~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~ 102 (471)
T 1dnp_A 69 GIPLLFREVDDFVASVEIVKQVCAENSVTHLFYN 102 (471)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCeEEEEEccCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 887665433 58999999999999999998883
No 156
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=47.97 E-value=56 Score=21.50 Aligned_cols=45 Identities=7% Similarity=0.049 Sum_probs=32.1
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+..+.+++.+++.|++++..... ...........+.|+.++|..+
T Consensus 143 ~~a~~iq~~l~~iGi~v~i~~~~---~~~~~~~~~~~~~d~~~~~w~~ 187 (258)
T 3lvu_A 143 TVLEIYTRALERLGIAAQIEKVD---NAQYTARVAELDFDLTPFRRDL 187 (258)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEC---HHHHHHHHHTTCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCeeEEEecC---HHHHHHHhccCCccEEEecCCC
Confidence 44566777788889998887753 3345555577789999988754
No 157
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=47.64 E-value=23 Score=23.07 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=28.6
Q ss_pred CccEEEEEecCCHhHH-HHHHHHHhhcccCCCEEEEEEEe
Q 032042 3 GTRRVGVAVDFSACSK-KALQWAADNVVRNGDHLILVTVV 41 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~-~al~~a~~la~~~~~~v~ll~v~ 41 (148)
.-++|++++.++...- ++++.+-.+.+ .+.+|+++-..
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~-~g~eV~vv~T~ 44 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVE-LGAKVTPFVTH 44 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHH-TTCEEEEECSS
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhh-CCCEEEEEECh
Confidence 3479999999998777 78888777654 47887776543
No 158
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=47.06 E-value=19 Score=23.41 Aligned_cols=38 Identities=13% Similarity=0.033 Sum_probs=25.4
Q ss_pred cEEEEEecCCHh------HHHHHHHHHhhcccC--CCEEEEEEEecC
Q 032042 5 RRVGVAVDFSAC------SKKALQWAADNVVRN--GDHLILVTVVPE 43 (148)
Q Consensus 5 ~~ILv~~d~s~~------s~~al~~a~~la~~~--~~~v~ll~v~~~ 43 (148)
++||+-. +|+. +...++++++-++.. +.++.++.....
T Consensus 5 ~kiLiI~-gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~ 50 (211)
T 3p0r_A 5 TKVLFVK-ANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKE 50 (211)
T ss_dssp CEEEEEE-CCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGS
T ss_pred CEEEEEE-eCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 5777744 4433 567777777776653 789988887653
No 159
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=46.58 E-value=28 Score=25.24 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=29.0
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEE
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILV 38 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll 38 (148)
++|+++.|++....+|...++......+..+.++
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~ 321 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPV 321 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6899999999999999888888887777777664
No 160
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=46.49 E-value=26 Score=22.26 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=27.9
Q ss_pred CCCccEEEEEecCC---HhHHHHHHHHHhh-cccCCCEEEEEEEec
Q 032042 1 MDGTRRVGVAVDFS---ACSKKALQWAADN-VVRNGDHLILVTVVP 42 (148)
Q Consensus 1 m~~~~~ILv~~d~s---~~s~~al~~a~~l-a~~~~~~v~ll~v~~ 42 (148)
|| ++|++.+... ..+...++++... +...+.++.++.+.+
T Consensus 1 mM--mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~ 44 (197)
T 2vzf_A 1 MT--YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVID 44 (197)
T ss_dssp CC--EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGG
T ss_pred CC--ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 55 5787766542 5678888888776 666677888877644
No 161
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=46.39 E-value=34 Score=22.67 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=26.5
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCCc
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGK 133 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~ 133 (148)
.++.+.+++.|..+-..+..+.+.+.+.++... +|+|.+.+...+.
T Consensus 102 ~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~--~D~Vl~msv~pGf 147 (228)
T 3ovp_A 102 GALIKDIRENGMKVGLAIKPGTSVEYLAPWANQ--IDMALVMTVEPGF 147 (228)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGG--CSEEEEESSCTTT
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhcc--CCeEEEeeecCCC
Confidence 344444556677665555445666666655554 7777665554443
No 162
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=46.22 E-value=16 Score=22.34 Aligned_cols=42 Identities=5% Similarity=-0.058 Sum_probs=27.3
Q ss_pred HHHhhhcCceEEEEEee--C-Ch--hHHHHHHHhhcCCcEEEEEecC
Q 032042 89 NTVARQKQIVVVMKIFW--G-DP--REKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 89 ~~~~~~~~~~~~~~~~~--g-~~--~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+++++.|++++..... | +. ...|.+.+++.++|+||--+.+
T Consensus 60 a~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~ 106 (143)
T 2yvq_A 60 SDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNN 106 (143)
T ss_dssp HHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCC
T ss_pred HHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCC
Confidence 34455678877665432 2 20 0369999999999999986544
No 163
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=46.14 E-value=93 Score=23.44 Aligned_cols=29 Identities=7% Similarity=-0.017 Sum_probs=20.6
Q ss_pred EEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 102 KIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 102 ~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+..+.-...+.+.+++.++||+|-++++
T Consensus 416 ~v~~~~d~~~l~~~i~~~~pDLiig~~~~ 444 (519)
T 1qgu_B 416 EVFINCDLWHFRSLMFTRQPDFMIGNSYG 444 (519)
T ss_dssp EEEESCCHHHHHHHHHHHCCSEEEECGGG
T ss_pred EEEECCCHHHHHHHHhhcCCCEEEECcch
Confidence 34445446667788888899999977665
No 164
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=46.03 E-value=35 Score=20.05 Aligned_cols=44 Identities=7% Similarity=0.011 Sum_probs=26.4
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL 131 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~ 131 (148)
++..+.+.+.+.+.|++++..-........ -.++|.||+|+...
T Consensus 13 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~------l~~~d~iiig~pty 56 (138)
T 5nul_A 13 EKMAELIAKGIIESGKDVNTINVSDVNIDE------LLNEDILILGCSAM 56 (138)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEGGGCCHHH------HTTCSEEEEEECCB
T ss_pred HHHHHHHHHHHHHCCCeEEEEEhhhCCHHH------HhhCCEEEEEcCcc
Confidence 455666677777778776654333221221 23589999998753
No 165
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=45.86 E-value=17 Score=22.12 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=19.4
Q ss_pred hhHHHHHHHhhcCCcEEEEEec
Q 032042 108 PREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 108 ~~~~I~~~a~~~~~dliV~g~~ 129 (148)
..+.|.+++++++++.||+|-+
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP 62 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLP 62 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecc
Confidence 3789999999999999999954
No 166
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=45.61 E-value=31 Score=22.63 Aligned_cols=37 Identities=16% Similarity=-0.088 Sum_probs=28.1
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
.++|++++.++..+-++++.+-.+.+ .+ +|+++-...
T Consensus 19 ~k~IllgvTGsiaa~k~~~ll~~L~~-~g-~V~vv~T~~ 55 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIKFGNLCHCFTE-WA-EVRAVVTKS 55 (209)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHHT-TS-EEEEEECTG
T ss_pred CCEEEEEEeCcHHHHHHHHHHHHHhc-CC-CEEEEEcch
Confidence 47999999999988888888877655 45 777665433
No 167
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=45.45 E-value=38 Score=22.50 Aligned_cols=44 Identities=5% Similarity=0.015 Sum_probs=26.1
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE-ec
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG-NR 129 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g-~~ 129 (148)
.+++++...+.|.++...+..|=-.+.+.+. .+.++|.+|+| +.
T Consensus 154 I~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~-~~aGAd~~V~G~sa 198 (231)
T 3ctl_A 154 LAELKAWREREGLEYEIEVDGSCNQATYEKL-MAAGADVFIVGTSG 198 (231)
T ss_dssp HHHHHHHHHHHTCCCEEEEESCCSTTTHHHH-HHHTCCEEEECTTT
T ss_pred HHHHHHHHhccCCCceEEEECCcCHHHHHHH-HHcCCCEEEEccHH
Confidence 3455565555566655555444224455444 44689999999 54
No 168
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=45.36 E-value=54 Score=20.52 Aligned_cols=45 Identities=18% Similarity=0.095 Sum_probs=26.0
Q ss_pred hhhHHHHHHHhhh-cCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQ-KQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
++..+.+.+.+.+ .|++++..-......+.+ . ++|.||+|+....
T Consensus 19 ~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l----~--~aD~ii~gsP~y~ 64 (188)
T 2ark_A 19 KKMAELVAEGARSLEGTEVRLKHVDEATKEDV----L--WADGLAVGSPTNM 64 (188)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEETTTCCHHHH----H--HCSEEEEEEECBT
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHH----H--hCCEEEEEeCccC
Confidence 4556666666666 676665543332222222 2 2899999987653
No 169
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=45.22 E-value=53 Score=20.40 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=27.7
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
+.+...++..|+++++... +...+.+..+..++|+++.+
T Consensus 30 dl~~~~~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 68 (226)
T 1wdn_A 30 DLWAAIAKELKLDYELKPM---DFSGIIPALQTKNVDLALAG 68 (226)
T ss_dssp HHHHHHHHHHTCCEEEEEE---CGGGHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHhCCEEEEEEC---CHHHHHHHHhCCCCCEEEEc
Confidence 3344455556888777653 56778888888999998754
No 170
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=45.16 E-value=42 Score=19.23 Aligned_cols=43 Identities=7% Similarity=0.147 Sum_probs=25.5
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
...+.+...+...|+.+. . ..+ .+..++.+++..+|+|++...
T Consensus 17 ~~~~~l~~~l~~~g~~v~--~-~~~-~~~a~~~l~~~~~dlvi~d~~ 59 (140)
T 3grc_A 17 DIARLLNLMLEKGGFDSD--M-VHS-AAQALEQVARRPYAAMTVDLN 59 (140)
T ss_dssp HHHHHHHHHHHHTTCEEE--E-ECS-HHHHHHHHHHSCCSEEEECSC
T ss_pred HHHHHHHHHHHHCCCeEE--E-ECC-HHHHHHHHHhCCCCEEEEeCC
Confidence 344455666666676532 2 234 344446667778999999654
No 171
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=45.06 E-value=18 Score=24.62 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=22.3
Q ss_pred EEEEEeeCChhHHHHHHHhhcCCcEEEE
Q 032042 99 VVMKIFWGDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 99 ~~~~~~~g~~~~~I~~~a~~~~~dliV~ 126 (148)
++..+..-++..++++.|.+.++|+||.
T Consensus 38 V~~I~~alD~t~~vi~eAi~~gadlIit 65 (267)
T 2fyw_A 38 IQRVMVALDIREETVAEAIEKGVDLIIV 65 (267)
T ss_dssp CSEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred cCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence 3444444588999999999999999997
No 172
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=44.70 E-value=31 Score=21.48 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=32.1
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCC
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGG 45 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~ 45 (148)
..+.++|.+..|..+...++.+ ..|+..|+++..+.-.+..+
T Consensus 109 ~~~Dvvi~iS~sG~t~~~~~~~-~~ak~~g~~vi~iT~~~~s~ 150 (188)
T 1tk9_A 109 NEKDVLIGISTSGKSPNVLEAL-KKAKELNMLCLGLSGKGGGM 150 (188)
T ss_dssp CTTCEEEEECSSSCCHHHHHHH-HHHHHTTCEEEEEEEGGGTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHH-HHHHHCCCEEEEEeCCCCcc
Confidence 3467899999998887777554 55888899999988866543
No 173
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=44.22 E-value=54 Score=21.17 Aligned_cols=43 Identities=7% Similarity=0.237 Sum_probs=23.2
Q ss_pred hHHHHHHHhhhcCce---EEEEEeeCCh---hHHHHHHHhhcCCcEEEE
Q 032042 84 TLDIVNTVARQKQIV---VVMKIFWGDP---REKICEAIDKIPLSCLVI 126 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~---~~~~~~~g~~---~~~I~~~a~~~~~dliV~ 126 (148)
.-..+.+.+++.|.+ +...++..++ .++|.+.+.+.++|+||.
T Consensus 24 n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVit 72 (195)
T 1di6_A 24 GIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLT 72 (195)
T ss_dssp HHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred HHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 344466667677765 2333333332 244444444347999987
No 174
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=43.90 E-value=44 Score=25.22 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=56.4
Q ss_pred cCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHH
Q 032042 12 DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (148)
Q Consensus 12 d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (148)
|..-....+|..|+.. +.+|..++++++...... .+ .+ ..+ ... . ......+.+..+.+.
T Consensus 49 DLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~---~~--~~--~~~---~~~---~---r~~Fl~~sL~~L~~~ 108 (525)
T 2j4d_A 49 DLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTT---HF--FN--FPK---TGA---L---RGGFLMECLVDLRKN 108 (525)
T ss_dssp CCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBC---TT--TC--CBS---SCH---H---HHHHHHHHHHHHHHH
T ss_pred CcCcchhHHHHHHHhc----CCcEEEEEEECchhhccc---cc--cc--CCC---CCH---H---HHHHHHHHHHHHHHH
Confidence 3333556777777653 347889999886432100 00 00 000 000 0 001124566677777
Q ss_pred hhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 92 ARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 92 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
+++.|..+.+ ..|++.+.|.+.+++.+++-|+.-
T Consensus 109 L~~~G~~L~v--~~g~~~~~l~~l~~~~~~~~V~~~ 142 (525)
T 2j4d_A 109 LMKRGLNLLI--RSGKPEEILPSLAKDFGARTVFAH 142 (525)
T ss_dssp HHHTTCCCEE--EESCHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHcCCeEEE--EeCCHHHHHHHHHHHcCCCEEEEe
Confidence 7777876544 458999999999999999998885
No 175
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=43.52 E-value=87 Score=22.54 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=22.0
Q ss_pred HhHHHHHHHHHhhcccCCC-EEEEEEEec
Q 032042 15 ACSKKALQWAADNVVRNGD-HLILVTVVP 42 (148)
Q Consensus 15 ~~s~~al~~a~~la~~~~~-~v~ll~v~~ 42 (148)
..+++.+++|.++|++.+. +|+++|=-.
T Consensus 166 ~~~eRIar~AFe~A~~r~~kkVt~v~KaN 194 (364)
T 3flk_A 166 RGVDRILKYAFDLAEKRERKHVTSATKSN 194 (364)
T ss_dssp HHHHHHHHHHHHHHHHSSSCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECcc
Confidence 4778999999999988765 688887543
No 176
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=43.08 E-value=87 Score=22.23 Aligned_cols=28 Identities=11% Similarity=-0.050 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHhhcccC-CCEEEEEEEec
Q 032042 15 ACSKKALQWAADNVVRN-GDHLILVTVVP 42 (148)
Q Consensus 15 ~~s~~al~~a~~la~~~-~~~v~ll~v~~ 42 (148)
..+++.+++|.++|++. ..+|+++|-..
T Consensus 144 ~~~eRiar~AF~~A~~r~rkkvt~v~KaN 172 (333)
T 1x0l_A 144 KASERIGRAALRIAEGRPRKTLHIAHKAN 172 (333)
T ss_dssp HHHHHHHHHHHHHHHTSTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 47789999999999987 56788887544
No 177
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=42.93 E-value=31 Score=22.43 Aligned_cols=42 Identities=5% Similarity=0.099 Sum_probs=31.0
Q ss_pred HHHHHHHhhhcCceEEEEEee----------CChhHHHHHHHhhcCCcEEEE
Q 032042 85 LDIVNTVARQKQIVVVMKIFW----------GDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~----------g~~~~~I~~~a~~~~~dliV~ 126 (148)
.+.+...++..|+++++.... ..+...++...+..++|+++-
T Consensus 37 vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~ 88 (259)
T 3g3k_A 37 IDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVA 88 (259)
T ss_dssp HHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTSCSEECS
T ss_pred HHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHhcCcccEEEe
Confidence 344556666678998887653 246788889999999999864
No 178
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=42.80 E-value=65 Score=20.72 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=31.9
Q ss_pred hhhHHHHHHHhhh-c-CceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 82 PETLDIVNTVARQ-K-QIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 82 ~~~~~~~~~~~~~-~-~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+..+.+++.+++ . |++++..... ...........+.|+.++|..+
T Consensus 112 ~~~a~~i~~~l~~~i~GI~v~i~~~~---~~~~~~~~~~g~~d~~~~~w~~ 159 (229)
T 3o6p_A 112 KKTVEFVQGSIQDALDGVKVTVSPVP---FSVRLDRSNKGDFDAVIGGWSA 159 (229)
T ss_dssp HHHHHHHHHHHHHHSTTEEEEEEEEC---HHHHHHHHHHTCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEecC---HHHHHHHhhcCCceEEEecccC
Confidence 3455667778888 7 9888887653 3444455566789999987654
No 179
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=42.78 E-value=43 Score=26.57 Aligned_cols=43 Identities=7% Similarity=-0.049 Sum_probs=28.5
Q ss_pred HHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 87 IVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+...+...|+++.. .-...+.+.+++.+.+.++|+|++.+..
T Consensus 615 iVa~~l~~~GfeVi~-lG~~v~~eeiv~aA~e~~adiVglSsl~ 657 (727)
T 1req_A 615 VIATAYADLGFDVDV-GPLFQTPEETARQAVEADVHVVGVSSLA 657 (727)
T ss_dssp HHHHHHHHHTCEEEE-CCTTBCHHHHHHHHHHTTCSEEEEEECS
T ss_pred HHHHHHHhCCeEEEe-CCCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 344455556666522 1112457899999999999999997643
No 180
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=42.61 E-value=32 Score=21.40 Aligned_cols=35 Identities=9% Similarity=-0.054 Sum_probs=25.4
Q ss_pred cCceEEEEEeeCC-hhHHHHHHHhhcCCcEEEEEec
Q 032042 95 KQIVVVMKIFWGD-PREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 95 ~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~g~~ 129 (148)
.|++++....... -...|.+.+++.++|+||--+.
T Consensus 56 ~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~ 91 (152)
T 1b93_A 56 TGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWD 91 (152)
T ss_dssp HCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEEECC
T ss_pred hCceeEEEEecCCCCCchHHHHHHCCCccEEEEcCC
Confidence 6888776543211 2347999999999999998765
No 181
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=42.29 E-value=63 Score=20.71 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=28.7
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
.+.++..++..|+++++... +...+++..+..++|+++.+
T Consensus 50 ~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 89 (249)
T 4f3p_A 50 LDLWAEIAKGAGWTYKIQPM---DFAGLIPALQTQNIDVALSG 89 (249)
T ss_dssp HHHHHHHHHHHTCCEEEEEE---CGGGHHHHHHTTSCSEEEEE
T ss_pred HHHHHHHHHHcCCceEEEec---CHHHHHHHHHCCCCCEEEec
Confidence 34455555666888887764 56777888888999997654
No 182
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=42.12 E-value=53 Score=26.24 Aligned_cols=43 Identities=5% Similarity=-0.060 Sum_probs=28.8
Q ss_pred HHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 87 IVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+...+...|+++.. .-...+.+.+++.+.+.++|+|++.+-.
T Consensus 623 iVa~~l~~~GfeVi~-lG~~v~~eeiv~aA~e~~adiVglSsl~ 665 (762)
T 2xij_A 623 VIATGFADLGFDVDI-GPLFQTPREVAQQAVDADVHAVGVSTLA 665 (762)
T ss_dssp HHHHHHHHTTCEEEE-CCTTCCHHHHHHHHHHTTCSEEEEEECS
T ss_pred HHHHHHHhCCeEEee-CCCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 344455566776532 1112567899999999999999997643
No 183
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=41.98 E-value=48 Score=18.97 Aligned_cols=39 Identities=3% Similarity=-0.043 Sum_probs=28.0
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
.++||++....-.+.-.++..-..++..|-++.+-++..
T Consensus 3 mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~ 41 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPE 41 (106)
T ss_dssp CEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECS
T ss_pred CcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 467888887765555777777777877888777666543
No 184
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=41.96 E-value=30 Score=20.02 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=26.1
Q ss_pred HHHHHHHhhhcCceEEEEEee-CChhHHHHHHHhhcCCcEEEEEecCCCc
Q 032042 85 LDIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLGK 133 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~g~~~~~~ 133 (148)
.+.+++.+++.|++++..... +... +... ++|+|++|.+-+..
T Consensus 23 v~km~~~a~~~gi~v~i~a~~~~~~~----~~~~--~~DvvLLgPQV~y~ 66 (108)
T 3nbm_A 23 ANAINEGANLTEVRVIANSGAYGAHY----DIMG--VYDLIILAPQVRSY 66 (108)
T ss_dssp HHHHHHHHHHHTCSEEEEEEETTSCT----TTGG--GCSEEEECGGGGGG
T ss_pred HHHHHHHHHHCCCceEEEEcchHHHH----hhcc--CCCEEEEChHHHHH
Confidence 345566666778887775532 3322 2233 38999999876543
No 185
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=41.83 E-value=45 Score=19.60 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=6.3
Q ss_pred HHHhhcCCcEEEE
Q 032042 114 EAIDKIPLSCLVI 126 (148)
Q Consensus 114 ~~a~~~~~dliV~ 126 (148)
+.+++..+|+|++
T Consensus 47 ~~~~~~~~Dlvll 59 (123)
T 2lpm_A 47 DIARKGQFDIAII 59 (123)
T ss_dssp HHHHHCCSSEEEE
T ss_pred HHHHhCCCCEEEE
Confidence 3344445555555
No 186
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=41.21 E-value=74 Score=20.91 Aligned_cols=45 Identities=2% Similarity=-0.055 Sum_probs=31.5
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+..+.+++.+++.|++++..... .....+.....+.|+.+.|..+
T Consensus 142 ~~a~~iq~~l~~iGI~v~i~~~~---~~~~~~~~~~~~~d~~~~~w~~ 186 (259)
T 3pam_A 142 KVALAFQSNLSRLGIHAEIRTVD---DSQYQNRLGMFNYDMIIGKLKN 186 (259)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECC---HHHHHHHHHHTCCSEEEEEECC
T ss_pred HHHHHHHHHHHHcCCEEEEEecC---HHHHHHHHhcCCeeEEEeccCC
Confidence 44566777788889988887653 3444455567789999998654
No 187
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=41.05 E-value=46 Score=19.30 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=27.3
Q ss_pred hhhHHHHHHHhhhcC-ceEEEEEeeCChhHHHHHHHhh-cCCcEEEEEecC
Q 032042 82 PETLDIVNTVARQKQ-IVVVMKIFWGDPREKICEAIDK-IPLSCLVIGNRG 130 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~I~~~a~~-~~~dliV~g~~~ 130 (148)
....+.+...+...| +.+.. ..+..+++....+. ..+|+|++...-
T Consensus 30 ~~~~~~l~~~L~~~g~~~v~~---~~~~~~~~~~~~~~~~~~dlvi~D~~l 77 (146)
T 4dad_A 30 ASRLAHLARLVGDAGRYRVTR---TVGRAAQIVQRTDGLDAFDILMIDGAA 77 (146)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE---ECCCHHHHTTCHHHHTTCSEEEEECTT
T ss_pred HHHHHHHHHHHhhCCCeEEEE---eCCHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 344555666666666 55433 23455566555555 678888887653
No 188
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=40.94 E-value=59 Score=19.64 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=34.5
Q ss_pred hhHHHHHHHhhhcCceEEEEEe--eCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 83 ETLDIVNTVARQKQIVVVMKIF--WGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..-+.+...++..|+.++.... .......|-+.....-+=+||+|.+.
T Consensus 22 ~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~kE 71 (130)
T 1v95_A 22 DYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQH 71 (130)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHH
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEechH
Confidence 4455677777888999999886 45667777776666666677777553
No 189
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=40.54 E-value=48 Score=18.51 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=24.0
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+.+...+...|..+.. ..+.. ..++..++..+|+|++...-
T Consensus 15 ~~~l~~~L~~~g~~v~~---~~~~~-~al~~~~~~~~dlii~D~~~ 56 (120)
T 3f6p_A 15 ADILEFNLRKEGYEVHC---AHDGN-EAVEMVEELQPDLILLDIML 56 (120)
T ss_dssp HHHHHHHHHHTTCEEEE---ESSHH-HHHHHHHTTCCSEEEEETTS
T ss_pred HHHHHHHHHhCCEEEEE---eCCHH-HHHHHHhhCCCCEEEEeCCC
Confidence 34455555556665432 23433 44456667788888886543
No 190
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=40.47 E-value=34 Score=21.54 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=31.3
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecC
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~ 43 (148)
..+.++|.+..|..+...++.+ ..|+..|++++.+.-.+.
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~~~-~~ak~~g~~vI~IT~~~~ 147 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVKAV-EAAVTRDMTIVALTGYDG 147 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHHHH-HHHHHTTCEEEEEECTTC
T ss_pred CCCCEEEEEeCCCCCHHHHHHH-HHHHHCCCEEEEEeCCCC
Confidence 3467899999999888888655 558889999988876543
No 191
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=40.26 E-value=74 Score=20.62 Aligned_cols=39 Identities=5% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
+.++..++..|+++++... +...+.+..+..++|+++-+
T Consensus 57 dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 95 (259)
T 4dz1_A 57 ELFSSYCQSRHCKLNITEY---AWDGMLGAVASGQADVAFSG 95 (259)
T ss_dssp HHHHHHHHHHTCEEEEEEC---CHHHHHHHHHHTSSSEEEEE
T ss_pred HHHHHHHHHhCCeEEEEEc---CHHHHHHHHhCCCCCEEEEC
Confidence 3455555666888877553 67778888888999998765
No 192
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=40.23 E-value=50 Score=18.61 Aligned_cols=43 Identities=7% Similarity=0.000 Sum_probs=25.2
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
...+.+.+.+...|..+.. ..+. +...+..++..+|+|++...
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~~~~-~~a~~~l~~~~~dlvi~d~~ 60 (130)
T 3eod_A 18 VFRSLLDSWFSSLGATTVL---AADG-VDALELLGGFTPDLMICDIA 60 (130)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESCH-HHHHHHHTTCCCSEEEECCC
T ss_pred HHHHHHHHHHHhCCceEEE---eCCH-HHHHHHHhcCCCCEEEEecC
Confidence 3344556666666665432 2343 34445667778899988654
No 193
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=40.10 E-value=57 Score=19.23 Aligned_cols=43 Identities=0% Similarity=-0.067 Sum_probs=24.8
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
...+.+.+.+...|+.+. . ..+ .+..++.+++..+|+|++...
T Consensus 18 ~~~~~l~~~L~~~g~~v~--~-~~~-~~~al~~l~~~~~dlii~D~~ 60 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTE--H-VRN-GREAVRFLSLTRPDLIISDVL 60 (154)
T ss_dssp HHHHHHHHHHHTTTCEEE--E-ESS-HHHHHHHHTTCCCSEEEEESC
T ss_pred HHHHHHHHHHHHCCCEEE--E-eCC-HHHHHHHHHhCCCCEEEEeCC
Confidence 344555666666666542 2 233 344446666778888888754
No 194
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=40.04 E-value=23 Score=21.55 Aligned_cols=38 Identities=3% Similarity=-0.020 Sum_probs=26.6
Q ss_pred hhh-cCceEEEEEeeC-ChhHHHHHHHhhcCCcEEEEEec
Q 032042 92 ARQ-KQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 92 ~~~-~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
+++ .|++++...... .-...|.+.+++.++|+||--+.
T Consensus 44 L~e~~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 44 IEEATGLTVEKLLSGPLGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp HHHHHCCCCEECSCGGGTHHHHHHHHHHTTCEEEEEEECC
T ss_pred HHHhhCceEEEEEecCCCCcchHHHHHHCCCccEEEEccC
Confidence 444 688877643221 22357999999999999998665
No 195
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=40.02 E-value=1.1e+02 Score=22.59 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=26.2
Q ss_pred HHHHhhhcCceEEEEEeeCChhH---HHHHHHhhcCCcEEEEEecCCCcc
Q 032042 88 VNTVARQKQIVVVMKIFWGDPRE---KICEAIDKIPLSCLVIGNRGLGKL 134 (148)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~---~I~~~a~~~~~dliV~g~~~~~~~ 134 (148)
+..+....++++...-...+|.+ ..++.++..++|+|++-+.|+...
T Consensus 147 L~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~ 196 (443)
T 3dm5_A 147 LRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKE 196 (443)
T ss_dssp HHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSC
T ss_pred HHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence 44444455666433222234432 334566667788888887776653
No 196
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=39.75 E-value=58 Score=21.75 Aligned_cols=44 Identities=14% Similarity=0.010 Sum_probs=25.9
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh--cCCcEEEEEecC
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVIGNRG 130 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliV~g~~~ 130 (148)
+++++...+.+.++...+..|=-.+.+.+ +.+ .++|.+|+|+.=
T Consensus 175 ~~lr~~~~~~~~~~~I~vdGGI~~~~~~~-~~~~~aGad~~VvGSaI 220 (237)
T 3cu2_A 175 IQVEKRLGNRRVEKLINIDGSMTLELAKY-FKQGTHQIDWLVSGSAL 220 (237)
T ss_dssp HHHHHHHGGGGGGCEEEEESSCCHHHHHH-HHHSSSCCCCEEECGGG
T ss_pred HHHHHHHHhcCCCceEEEECCcCHHHHHH-HHHhCCCCcEEEEeeHH
Confidence 44555554455555554543422445544 455 789999999763
No 197
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=39.36 E-value=88 Score=21.25 Aligned_cols=107 Identities=10% Similarity=0.020 Sum_probs=65.0
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhh
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (148)
...=|+..|.......++..+.+|+..+..|-. |+-.+. ..+.|-..+..+ .+++.... .-.
T Consensus 35 tSANIACGfHAGDp~~M~~Tv~lA~~~gV~IGA-HPgypD---------l~GFGRR~m~~s----~~el~~~v----~YQ 96 (252)
T 2x5e_A 35 DQANLACGFHAGDPLTMRRAVELAVRHGVSIGA-HPAYPD---------LSGFGRRSLACS----AEEVHAMV----LYQ 96 (252)
T ss_dssp SEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEE-ECCCSC---------TTTTTCSCCCCC----HHHHHHHH----HHH
T ss_pred hhhhhhccccCCCHHHHHHHHHHHHHcCCeeec-CCCCCc---------ccCCCCCCCCCC----HHHHHHHH----HHH
Confidence 445577777777788889999999988876644 332221 111122111111 11222221 233
Q ss_pred HHHHHHHhhhcCceEEEEEe----------eCChhHHHHHHHhhcCCcEEEEEec
Q 032042 85 LDIVNTVARQKQIVVVMKIF----------WGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~----------~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
+..+...++..|.+++..-- ....+++|++.++..+++|+++|..
T Consensus 97 iGAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~ 151 (252)
T 2x5e_A 97 IGALDAFCRSLGTQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLA 151 (252)
T ss_dssp HHHHHHHHHHTTCCCCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 45677777778877655321 1244799999999999999999966
No 198
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=39.27 E-value=64 Score=20.18 Aligned_cols=54 Identities=19% Similarity=0.107 Sum_probs=33.4
Q ss_pred hhcCCCChhhHHHHHHHhhhcCceEEEEEee--CChhHHHHHHHhhcCCcEEEEEecC
Q 032042 75 KYGAKPDPETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
-|-....+...+.+.+.+.+.|+++++.-.+ |...+.|-+...+ .|-||+-.-.
T Consensus 27 iYG~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~--~dgiIINpgA 82 (156)
T 1gtz_A 27 IYGSDTLADVEALCVKAAAAHGGTVDFRQSNHEGELVDWIHEARLN--HCGIVINPAA 82 (156)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHH--CSEEEEECTT
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhc--CcEEEECchh
Confidence 3444445566677777777778877765543 3445555544433 8999995443
No 199
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=39.20 E-value=58 Score=22.78 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=28.3
Q ss_pred HHHHhhhcCceEEEEEeeCCh-hHHHHHHHhhcCCcEEEEEecC
Q 032042 88 VNTVARQKQIVVVMKIFWGDP-REKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~-~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+.+.+.++|+++.. ..+. ...+.+..++.++|+||+...+
T Consensus 51 v~~~A~~~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~y~ 91 (314)
T 1fmt_A 51 VKVLAEEKGLPVFQ---PVSLRPQENQQLVAELQADVMVVVAYG 91 (314)
T ss_dssp HHHHHHHTTCCEEC---CSCSCSHHHHHHHHHTTCSEEEEESCC
T ss_pred HHHHHHHcCCcEEe---cCCCCCHHHHHHHHhcCCCEEEEeecc
Confidence 55667778888632 1222 4577888889999999997665
No 200
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=38.97 E-value=20 Score=24.12 Aligned_cols=28 Identities=4% Similarity=0.067 Sum_probs=21.5
Q ss_pred EEEEEeeCChhHHHHHHHhhcCCcEEEE
Q 032042 99 VVMKIFWGDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 99 ~~~~~~~g~~~~~I~~~a~~~~~dliV~ 126 (148)
++..+..-++..++++.|.+.++|+||.
T Consensus 35 V~~I~~~lD~t~~vi~eAi~~~adlIit 62 (247)
T 1nmo_A 35 VQKIVTGVTASQALLDEAVRLGADAVIV 62 (247)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCSEEEE
T ss_pred cCEEEEEEcCCHHHHHHHHhCCCCEEEE
Confidence 3333333488889999999999999997
No 201
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=38.94 E-value=52 Score=18.46 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=22.7
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
.+.+...+...|+.+. . ..+..+ .++..++..+|+|++...
T Consensus 15 ~~~l~~~l~~~g~~v~--~-~~~~~~-al~~l~~~~~dlvllD~~ 55 (122)
T 3gl9_A 15 RKIVSFNLKKEGYEVI--E-AENGQI-ALEKLSEFTPDLIVLXIM 55 (122)
T ss_dssp HHHHHHHHHHTTCEEE--E-ESSHHH-HHHHHTTBCCSEEEECSC
T ss_pred HHHHHHHHHHCCcEEE--E-eCCHHH-HHHHHHhcCCCEEEEecc
Confidence 3445555555565543 1 234333 445566778888888543
No 202
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=38.39 E-value=78 Score=23.71 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=54.5
Q ss_pred cCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHH
Q 032042 12 DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (148)
Q Consensus 12 d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (148)
|..-....+|..|+.. + ++..|+++++..... ..+ .. .... ...+.+..+.+.
T Consensus 21 DLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~------------~~~----~~---~~~~---fl~~sL~~L~~~ 73 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGH------------YHP----GR---VSRW---WLKNSLAQLDSS 73 (509)
T ss_dssp CCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTT------------CCC----CH---HHHH---HHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHhC----C-CEEEEEEECchhccc------------CCc----ch---HHHH---HHHHHHHHHHHH
Confidence 3333556778887763 2 577888887642100 000 00 1100 124566777777
Q ss_pred hhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 92 ARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 92 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
+++.|..+.+.. .|++.+.|.+.+++.+++.|+..
T Consensus 74 L~~~G~~L~v~~-~g~~~~~l~~l~~~~~~~~V~~~ 108 (509)
T 1u3d_A 74 LRSLGTCLITKR-STDSVASLLDVVKSTGASQIFFN 108 (509)
T ss_dssp HHHTTCCEEEEE-CSCHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHCCCeEEEEe-CCCHHHHHHHHHHHcCCCEEEEe
Confidence 877788754422 26899999999999999999874
No 203
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=38.12 E-value=71 Score=19.78 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=18.0
Q ss_pred HHHHHHhhcCCcEEEEEecCCC
Q 032042 111 KICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 111 ~I~~~a~~~~~dliV~g~~~~~ 132 (148)
..++++++.++|.||.|-|.-+
T Consensus 73 l~~~~~~~~~~~~ivrG~r~~~ 94 (157)
T 3nv7_A 73 LLAYLAKEYHCKVLVRGLRVVS 94 (157)
T ss_dssp CHHHHHHHTTCCCBCCCCSCCC
T ss_pred hHHHHHHHcCCCEEEECCcccc
Confidence 3568899999999999977654
No 204
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=38.10 E-value=31 Score=20.49 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=23.5
Q ss_pred cE-EEEEecCCHhHHHHHHHHHhhcccCCC
Q 032042 5 RR-VGVAVDFSACSKKALQWAADNVVRNGD 33 (148)
Q Consensus 5 ~~-ILv~~d~s~~s~~al~~a~~la~~~~~ 33 (148)
+. |++.+|++.....+...+.......++
T Consensus 62 ~~~VIIltD~D~aGe~ir~~i~~~l~~~~~ 91 (118)
T 1t6t_1 62 WEKVILLFDLDTHGERINQKMKELLSSQGF 91 (118)
T ss_dssp CSEEEECCCSSHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEECCChhHHHHHHHHHHhcCccCc
Confidence 44 889999999999999988888766444
No 205
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=38.08 E-value=33 Score=22.95 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=23.8
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhccc
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVR 30 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~ 30 (148)
.+++|+++.|.+.....+...+......
T Consensus 198 ~~~~iil~~D~D~aG~~aa~~~~~~l~~ 225 (255)
T 1nui_A 198 QFEQIILMFDMDEAGRKAVEEAAQVLPA 225 (255)
T ss_dssp TBSCEEEECCSSHHHHHHHHHHHHHSCT
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhccC
Confidence 3678999999999999998888887754
No 206
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=37.82 E-value=43 Score=21.02 Aligned_cols=41 Identities=17% Similarity=0.002 Sum_probs=31.1
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCC
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~ 44 (148)
..+.++|.+..|..+...++. +..++..|++++.+.-.+..
T Consensus 115 ~~~d~vI~iS~SG~t~~~~~~-~~~ak~~g~~vI~IT~~~~s 155 (198)
T 2xbl_A 115 NEGDVLIGYSTSGKSPNILAA-FREAKAKGMTCVGFTGNRGG 155 (198)
T ss_dssp CTTCEEEEECSSSCCHHHHHH-HHHHHHTTCEEEEEECSCCC
T ss_pred CCCCEEEEEeCCCCCHHHHHH-HHHHHHCCCeEEEEECCCCC
Confidence 346789999999888777754 45688889999888776543
No 207
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=37.81 E-value=54 Score=18.34 Aligned_cols=43 Identities=5% Similarity=-0.048 Sum_probs=23.6
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
...+.+.+.+...|+.+.. ..+ .+..++..++..+|+|++...
T Consensus 14 ~~~~~l~~~L~~~g~~v~~---~~~-~~~a~~~l~~~~~dlii~D~~ 56 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADY---VMS-GTDALHAMSTRGYDAVFIDLN 56 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEE---ESS-HHHHHHHHHHSCCSEEEEESB
T ss_pred HHHHHHHHHHHHcCCCEEE---ECC-HHHHHHHHHhcCCCEEEEeCC
Confidence 3344555556555654322 123 344445566677888888654
No 208
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=37.66 E-value=87 Score=20.65 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=20.5
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
..+++++.|+.+. ..+++. +...+..+..+|+-.
T Consensus 12 ~~~lilAlD~~~~-~~a~~~----v~~~~~~v~~~Kvg~ 45 (228)
T 3m47_A 12 MNRLILAMDLMNR-DDALRV----TGEVREYIDTVKIGY 45 (228)
T ss_dssp GGGEEEECCCCSH-HHHHHH----HHTTTTTCSEEEEEH
T ss_pred CCCeEEEeCCCCH-HHHHHH----HHHcCCcccEEEEcH
Confidence 4679999998643 344444 444454556677743
No 209
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=37.63 E-value=62 Score=19.93 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=31.6
Q ss_pred hhcCCCChhhHHHHHHHhhhcCceEEEEEee--CChhHHHHHHHhhcCCcEEEEEecC
Q 032042 75 KYGAKPDPETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
-|-....+...+.+++.+.+.|+++++.-.+ |...+.|-+... +.|-||+-.-.
T Consensus 21 iYG~~tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~--~~dgiiiNpgA 76 (143)
T 1gqo_A 21 VFGRQTLTDIETDLFQFAEALHIQLTFFQSNHEGDLIDAIHEAEE--QYSGIVLNPGA 76 (143)
T ss_dssp HHCSCCHHHHHHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHHTT--TCSEEEEECGG
T ss_pred cCCcCCHHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhh--cCcEEEEccch
Confidence 3444445566677777777778876665432 333444443322 48999995444
No 210
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=37.53 E-value=77 Score=20.03 Aligned_cols=44 Identities=9% Similarity=-0.003 Sum_probs=29.2
Q ss_pred hhHHHHHHHhhhcCceEEEEEe-eCC------hhHHHHHHHhhcCCcEEEE
Q 032042 83 ETLDIVNTVARQKQIVVVMKIF-WGD------PREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~g~------~~~~I~~~a~~~~~dliV~ 126 (148)
+.-..+.+.++..|+++.+... .++ .-..-++.|++.++|+.|=
T Consensus 33 ~ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfIS 83 (180)
T 3qay_A 33 SLAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIE 83 (180)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEE
Confidence 4445667777777888655443 222 2456677899999998775
No 211
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=37.45 E-value=18 Score=22.39 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.2
Q ss_pred ChhHHHHHHHhhcCCcEEEEEec
Q 032042 107 DPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 107 ~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
...+.|.+.+++++++.||+|-.
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP 64 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFP 64 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeee
Confidence 45788889999999999999944
No 212
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=37.43 E-value=58 Score=18.61 Aligned_cols=15 Identities=7% Similarity=0.040 Sum_probs=7.5
Q ss_pred HHHhhcCCcEEEEEe
Q 032042 114 EAIDKIPLSCLVIGN 128 (148)
Q Consensus 114 ~~a~~~~~dliV~g~ 128 (148)
+..++..+|+|++..
T Consensus 45 ~~l~~~~~dlii~d~ 59 (142)
T 3cg4_A 45 DLLKKGFSGVVLLDI 59 (142)
T ss_dssp HHHHTCCCEEEEEES
T ss_pred HHHHhcCCCEEEEeC
Confidence 444444555555543
No 213
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=37.29 E-value=37 Score=22.47 Aligned_cols=77 Identities=10% Similarity=-0.044 Sum_probs=42.5
Q ss_pred HHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHHhhhcCce
Q 032042 19 KALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQKQIV 98 (148)
Q Consensus 19 ~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (148)
..++.++++|...|++...+++.+... .+ ..+.++ ...+.+..+.+.+++.|+.
T Consensus 84 ~~~~~~i~~A~~lG~~~v~~~~~p~~~----------------~~-----~~~~~~-----~~~~~l~~l~~~a~~~Gv~ 137 (281)
T 3u0h_A 84 SLLPDRARLCARLGARSVTAFLWPSMD----------------EE-----PVRYIS-----QLARRIRQVAVELLPLGMR 137 (281)
T ss_dssp HTHHHHHHHHHHTTCCEEEEECCSEES----------------SC-----HHHHHH-----HHHHHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHHHHcCCCEEEEeecCCCC----------------Cc-----chhhHH-----HHHHHHHHHHHHHHHcCCE
Confidence 345678888999999877765432110 00 000111 2245666777777788887
Q ss_pred EEEEEee-----------CChhHHHHHHHhhcCC
Q 032042 99 VVMKIFW-----------GDPREKICEAIDKIPL 121 (148)
Q Consensus 99 ~~~~~~~-----------g~~~~~I~~~a~~~~~ 121 (148)
+-.+-.. ....+.+.+.++..+.
T Consensus 138 l~lE~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 171 (281)
T 3u0h_A 138 VGLEYVGPHHLRHRRYPFVQSLADLKTFWEAIGA 171 (281)
T ss_dssp EEEECCCCGGGCCSSEECCCSHHHHHHHHHHHCC
T ss_pred EEEEeccccccccccccccCCHHHHHHHHHHcCC
Confidence 6655431 2234555566665443
No 214
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=37.25 E-value=1e+02 Score=21.37 Aligned_cols=32 Identities=19% Similarity=0.054 Sum_probs=23.7
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEe
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~ 41 (148)
.++++++.+ -+|.-++-.+. +.|.++..+|..
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~----~~G~~v~~v~~~ 211 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMM----KRGVEVIPVYIG 211 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHH----HBTCEEEEEEES
T ss_pred CcEEEEEeC-CcHHHHHHHHH----hCCCeEEEEEEE
Confidence 589999998 77765544443 458999999986
No 215
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=37.25 E-value=42 Score=21.52 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=32.3
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCC
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGG 45 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~ 45 (148)
..+.++|.+..|.++...++.+. .|+..|++++.+...+..+
T Consensus 113 ~~~Dvvi~iS~SG~t~~~~~~~~-~ak~~g~~vi~iT~~~~s~ 154 (201)
T 3trj_A 113 NEDDILLVITTSGDSENILSAVE-EAHDLEMKVIALTGGSGGA 154 (201)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHH-HHHHTTCEEEEEEETTCCG
T ss_pred CCCCEEEEEeCCCCCHHHHHHHH-HHHHCCCcEEEEECCCCCH
Confidence 45688999999888887776554 5888899999988866543
No 216
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=37.00 E-value=42 Score=19.49 Aligned_cols=40 Identities=3% Similarity=0.033 Sum_probs=24.6
Q ss_pred HHHHHHhhhcCceEEEEEeeC----Ch--hHHHHHHHhhcCCcEEEEEecCC
Q 032042 86 DIVNTVARQKQIVVVMKIFWG----DP--REKICEAIDKIPLSCLVIGNRGL 131 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g----~~--~~~I~~~a~~~~~dliV~g~~~~ 131 (148)
+.+++.+++.|+++++..... ++ .+.| .+ +|+||+.+...
T Consensus 23 eaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I----~~--AD~VIia~d~~ 68 (106)
T 2m1z_A 23 QALKKGAKKMGNLIKVETQGATGIENELTEKDV----NI--GEVVIFAVDTK 68 (106)
T ss_dssp HHHHHHHHHHTCEEEEEEEETTEESSCCCHHHH----HH--CSEEEEEESSC
T ss_pred HHHHHHHHHCCCEEEEEEecCccccCCCCHHHH----hh--CCEEEEecccc
Confidence 445566667788877766532 22 1333 33 89999987653
No 217
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=36.90 E-value=67 Score=19.11 Aligned_cols=45 Identities=13% Similarity=0.005 Sum_probs=24.3
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
...+.+...+...|+..... ..+ +.+-++..++..+|+|++-..-
T Consensus 23 ~~r~~l~~~L~~~G~~~v~~--a~~-g~~al~~~~~~~~DlillD~~M 67 (134)
T 3to5_A 23 TMRRIVKNLLRDLGFNNTQE--ADD-GLTALPMLKKGDFDFVVTDWNM 67 (134)
T ss_dssp HHHHHHHHHHHHTTCCCEEE--ESS-HHHHHHHHHHHCCSEEEEESCC
T ss_pred HHHHHHHHHHHHcCCcEEEE--ECC-HHHHHHHHHhCCCCEEEEcCCC
Confidence 34445566666667642111 123 3333455666788888885543
No 218
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=36.89 E-value=60 Score=18.61 Aligned_cols=43 Identities=16% Similarity=0.007 Sum_probs=23.6
Q ss_pred hHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..+.+...+...|+.+. . ..+..+ .++.+++..+|+|++...-
T Consensus 16 ~~~~l~~~L~~~g~~v~--~-~~~~~~-al~~~~~~~~dlvl~D~~l 58 (136)
T 3t6k_A 16 VAEMLELVLRGAGYEVR--R-AASGEE-ALQQIYKNLPDALICDVLL 58 (136)
T ss_dssp HHHHHHHHHHHTTCEEE--E-ESSHHH-HHHHHHHSCCSEEEEESCC
T ss_pred HHHHHHHHHHHCCCEEE--E-eCCHHH-HHHHHHhCCCCEEEEeCCC
Confidence 34445555555565543 1 234333 3455666778888886543
No 219
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=36.86 E-value=18 Score=24.33 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=18.8
Q ss_pred CChhHHHHHHHhhcCCcEEEE
Q 032042 106 GDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 106 g~~~~~I~~~a~~~~~dliV~ 126 (148)
-++..++++.|.+.++|+||.
T Consensus 43 lD~t~~vi~eAi~~~adlIit 63 (242)
T 2yyb_A 43 VDAGEAIFRKALEEEVDFLIV 63 (242)
T ss_dssp EECSHHHHHHHHHTTCSEEEE
T ss_pred EcCCHHHHHHHHHCCCCEEEE
Confidence 488899999999999999987
No 220
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=36.79 E-value=53 Score=24.27 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=26.2
Q ss_pred hHHHHHHHhhhcCceEEEEEeeCChh----HHHHHHHhhcCCcEEE-EE
Q 032042 84 TLDIVNTVARQKQIVVVMKIFWGDPR----EKICEAIDKIPLSCLV-IG 127 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~----~~I~~~a~~~~~dliV-~g 127 (148)
..+.+.+.+.+.|+++...+..|++. +.+.+.+++ ++|+|| +|
T Consensus 106 ~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvG 153 (450)
T 1ta9_A 106 CANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVG 153 (450)
T ss_dssp THHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeC
Confidence 45566666666788775445556553 334444556 889887 55
No 221
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=36.76 E-value=1.1e+02 Score=21.59 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=9.1
Q ss_pred HHHHHHHhhcCCcEEEEEe
Q 032042 110 EKICEAIDKIPLSCLVIGN 128 (148)
Q Consensus 110 ~~I~~~a~~~~~dliV~g~ 128 (148)
..+++.+++.+.+..+++.
T Consensus 234 ~~~~~~~~~~g~~~~~~~~ 252 (419)
T 3h5l_A 234 ALFMNQFMTDPTNSLVYLQ 252 (419)
T ss_dssp HHHHHHHTTSCCSCEEEEC
T ss_pred HHHHHHHHHcCCCceEEec
Confidence 3444445554545444443
No 222
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=36.75 E-value=47 Score=20.64 Aligned_cols=41 Identities=7% Similarity=0.015 Sum_probs=31.5
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCC
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~ 44 (148)
+.+.++|.+..|..+...++.+ ..++..|+++.++.-.+..
T Consensus 86 ~~~d~~i~iS~sG~t~~~~~~~-~~ak~~g~~vi~IT~~~~s 126 (187)
T 3sho_A 86 RPTDLMIGVSVWRYLRDTVAAL-AGAAERGVPTMALTDSSVS 126 (187)
T ss_dssp CTTEEEEEECCSSCCHHHHHHH-HHHHHTTCCEEEEESCTTS
T ss_pred CCCCEEEEEeCCCCCHHHHHHH-HHHHHCCCCEEEEeCCCCC
Confidence 3578899999998887776654 4588889999988876544
No 223
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=36.27 E-value=62 Score=18.54 Aligned_cols=42 Identities=7% Similarity=0.066 Sum_probs=23.6
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEe
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~ 128 (148)
...+.+...+...|+.+. . ..+. ....+..++..+|+|++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~--~-~~~~-~~a~~~l~~~~~dlvi~d~ 56 (142)
T 2qxy_A 15 ITFLAVKNALEKDGFNVI--W-AKNE-QEAFTFLRREKIDLVFVDV 56 (142)
T ss_dssp HHHHHHHHHHGGGTCEEE--E-ESSH-HHHHHHHTTSCCSEEEEEC
T ss_pred HHHHHHHHHHHhCCCEEE--E-ECCH-HHHHHHHhccCCCEEEEeC
Confidence 334445555555666543 1 2333 3444566667788888876
No 224
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=36.22 E-value=63 Score=18.61 Aligned_cols=45 Identities=9% Similarity=0.232 Sum_probs=24.8
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
...+.+...+...|..+.+... .+. +..++.+++..+|+|++...
T Consensus 16 ~~~~~l~~~L~~~~~~~~v~~~-~~~-~~a~~~l~~~~~dlii~D~~ 60 (144)
T 3kht_A 16 DDIALIRRVLDRKDIHCQLEFV-DNG-AKALYQVQQAKYDLIILDIG 60 (144)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEE-SSH-HHHHHHHTTCCCSEEEECTT
T ss_pred HHHHHHHHHHHhcCCCeeEEEE-CCH-HHHHHHhhcCCCCEEEEeCC
Confidence 3344555666666665443332 233 33445566677888888644
No 225
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=36.12 E-value=48 Score=20.62 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=31.3
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCC
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~ 44 (148)
+.+.++|.+..|..+...++. +..++..|++++++.-.+..
T Consensus 78 ~~~d~vI~iS~sG~t~~~~~~-~~~ak~~g~~vi~IT~~~~s 118 (186)
T 1m3s_A 78 AEGDLVIIGSGSGETKSLIHT-AAKAKSLHGIVAALTINPES 118 (186)
T ss_dssp CTTCEEEEECSSSCCHHHHHH-HHHHHHTTCEEEEEESCTTS
T ss_pred CCCCEEEEEcCCCCcHHHHHH-HHHHHHCCCEEEEEECCCCC
Confidence 346789999999888777664 45688889999888776543
No 226
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=36.08 E-value=90 Score=20.36 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=26.7
Q ss_pred HHHHHhhhcCceEEEEEeeCChhHHHHHHHhhc--CCcEEEEEecCCC
Q 032042 87 IVNTVARQKQIVVVMKIFWGDPREKICEAIDKI--PLSCLVIGNRGLG 132 (148)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~--~~dliV~g~~~~~ 132 (148)
...+.+++.|..+-..+...++.+.+..+.. . ++|.|.+++...+
T Consensus 104 ~~~~~i~~~g~~igv~~~p~t~~e~~~~~~~-~~~~~d~vl~~sv~pg 150 (228)
T 1h1y_A 104 ELIQSIKAKGMRPGVSLRPGTPVEEVFPLVE-AENPVELVLVMTVEPG 150 (228)
T ss_dssp HHHHHHHHTTCEEEEEECTTSCGGGGHHHHH-SSSCCSEEEEESSCTT
T ss_pred HHHHHHHHcCCCEEEEEeCCCCHHHHHHHHh-cCCCCCEEEEEeecCC
Confidence 3444455567776655543556666655544 2 5899988776544
No 227
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=35.97 E-value=53 Score=22.38 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=18.4
Q ss_pred ChhHHHHHHHhhcCCcEEEEEecC
Q 032042 107 DPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 107 ~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
...+.+.+..++.++|+||+...+
T Consensus 64 ~~~~~~~~~L~~~~pDliv~~~y~ 87 (260)
T 1zgh_A 64 NKDELTFEKVKLINPEYILFPHWS 87 (260)
T ss_dssp SGGGCCHHHHHHHCCSEEEESSCC
T ss_pred CCCHHHHHHHHhcCCCEEEEeccc
Confidence 345667788888999999997654
No 228
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=35.80 E-value=64 Score=18.61 Aligned_cols=44 Identities=7% Similarity=0.110 Sum_probs=25.4
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL 131 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~ 131 (148)
++..+.+.+.+...|++++..-......+. . .++|.||+|+...
T Consensus 14 ~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~----l--~~~d~vi~g~p~y 57 (137)
T 2fz5_A 14 EAMANEIEAAVKAAGADVESVRFEDTNVDD----V--ASKDVILLGCPAM 57 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSCCHHH----H--HTCSEEEEECCCB
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCCHHH----H--hcCCEEEEEcccc
Confidence 455566666666667776654332211111 2 3489999998764
No 229
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=35.71 E-value=63 Score=19.98 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=29.8
Q ss_pred ChhhHHHHHHHhhhcCceEEEEEee--CChhHHHHHHHhhcCCcEEEEEecC
Q 032042 81 DPETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+...+.+.+.+.+.|+++++.-.+ |...+.|-+...+ .|-||+-.-.
T Consensus 29 l~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~--~dgiiINpgA 78 (146)
T 1h05_A 29 HDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADA--AEPVILNAGG 78 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHH--TCCEEEECGG
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhc--CcEEEECchh
Confidence 4566666777777778877665542 3445555444333 8889985443
No 230
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=35.45 E-value=37 Score=22.11 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=29.2
Q ss_pred ChhhHHHHHHHhhhcCc--eEEEEEeeCChhH--------------HHHHHH-------hhcCCcEEEEEec
Q 032042 81 DPETLDIVNTVARQKQI--VVVMKIFWGDPRE--------------KICEAI-------DKIPLSCLVIGNR 129 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~--------------~I~~~a-------~~~~~dliV~g~~ 129 (148)
..++.+.+++.+++.|+ .-.+.+..|+..+ .+-+++ ....+|+|++-..
T Consensus 60 d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~ 131 (202)
T 3cvo_A 60 DRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR 131 (202)
T ss_dssp CHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS
T ss_pred CHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC
Confidence 35667777887887786 3344444455332 233443 1256999999655
No 231
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=35.43 E-value=1.2e+02 Score=21.67 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=22.2
Q ss_pred HhHHHHHHHHHhhcccC-CCEEEEEEEec
Q 032042 15 ACSKKALQWAADNVVRN-GDHLILVTVVP 42 (148)
Q Consensus 15 ~~s~~al~~a~~la~~~-~~~v~ll~v~~ 42 (148)
..+++.+++|.++|++. ..+|+++|=..
T Consensus 157 ~~~eRiar~AF~~A~~r~rkkVt~v~KaN 185 (349)
T 3blx_A 157 PKTERIARFAFDFAKKYNRKSVTAVHKAN 185 (349)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence 47789999999999886 56788887654
No 232
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=35.34 E-value=72 Score=21.86 Aligned_cols=40 Identities=15% Similarity=0.045 Sum_probs=22.4
Q ss_pred CCCc--cEEEEEecCCHhH-HHHHHHHHhhcccCCCEEEEEEEe
Q 032042 1 MDGT--RRVGVAVDFSACS-KKALQWAADNVVRNGDHLILVTVV 41 (148)
Q Consensus 1 m~~~--~~ILv~~d~s~~s-~~al~~a~~la~~~~~~v~ll~v~ 41 (148)
||.. +|||+...+.... ..++..+..+.+ .|.+|+++...
T Consensus 1 mM~~m~mkIl~~~~~~gG~~~~~~~la~~L~~-~G~~V~v~~~~ 43 (364)
T 1f0k_A 1 MMSGQGKRLMVMAGGTGGHVFPGLAVAHHLMA-QGWQVRWLGTA 43 (364)
T ss_dssp ------CEEEEECCSSHHHHHHHHHHHHHHHT-TTCEEEEEECT
T ss_pred CCCCCCcEEEEEeCCCccchhHHHHHHHHHHH-cCCEEEEEecC
Confidence 5554 6899887655433 334455555544 57888887653
No 233
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=35.25 E-value=69 Score=20.27 Aligned_cols=40 Identities=8% Similarity=0.297 Sum_probs=29.3
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
.+.++..++..|+++++... +...+++..+..++|+++.+
T Consensus 31 ~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 70 (237)
T 3kzg_A 31 IDLMQEICRRLHATCTFEAY---IFDDLFPALKNREVDLVIAS 70 (237)
T ss_dssp HHHHHHHHHHTTCEEEEEEE---CGGGHHHHHHTTSSSEECSS
T ss_pred HHHHHHHHHHhCCceEEEEc---CHHHHHHHHhCCCCCEEEEc
Confidence 34455666677888887664 56788888889999987643
No 234
>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}
Probab=35.22 E-value=50 Score=22.36 Aligned_cols=37 Identities=11% Similarity=-0.010 Sum_probs=22.5
Q ss_pred ccEEEEEecCCHhHHHH-HHHHHhhcccCCCEEEEEEE
Q 032042 4 TRRVGVAVDFSACSKKA-LQWAADNVVRNGDHLILVTV 40 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~a-l~~a~~la~~~~~~v~ll~v 40 (148)
..++.|++|+++..... .+++..++...+..+..+-+
T Consensus 13 ~~~LcVgLD~~~~~~~~~~~~~~~lv~~l~~~v~~~Kv 50 (255)
T 3qw3_A 13 RSLLCVGLDPRAKTAAAAVEECKRLIEQTHEYAAAYKP 50 (255)
T ss_dssp TCCEEEEECCCCSSHHHHHHHHHHHHHHHGGGCSEEEE
T ss_pred CCCEEEEeCCCchhcchHHHHHHHHHHHhCCcCcEEEE
Confidence 35789999988644333 66666666665554444333
No 235
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=35.16 E-value=70 Score=20.35 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=32.6
Q ss_pred hhcCCCChhhHHHHHHHhhhcCceEEEEEee--CChhHHHHHHHhhcCCcEEEEEecC
Q 032042 75 KYGAKPDPETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
-|-....+...+.+.+.+.+.|+++++.-.+ |...+.|-+... ++|-||+-.-.
T Consensus 49 iYG~~TL~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~--~~dgIIINPgA 104 (172)
T 3n8k_A 49 VYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAAD--AAEPVILNAGG 104 (172)
T ss_dssp HHCSCCHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHH--HTCCEEEECGG
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhh--cCcEEEECcch
Confidence 3444444566666777777778877665543 344555555433 38999995544
No 236
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=35.00 E-value=45 Score=22.32 Aligned_cols=38 Identities=16% Similarity=0.038 Sum_probs=25.6
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
+.|++-+|+.++....+..++..++..+..|+.+-+-.
T Consensus 127 ~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG~ 164 (266)
T 4hqo_A 127 QLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQ 164 (266)
T ss_dssp EEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred eEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecCc
Confidence 56777788877654445556666777788777776644
No 237
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=34.95 E-value=65 Score=18.38 Aligned_cols=42 Identities=10% Similarity=0.238 Sum_probs=25.4
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCC
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL 131 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~ 131 (148)
.+.+++.+.+.|+++++....-. .+.+.. .++|+|+.+..-+
T Consensus 21 ~~kl~~~~~~~gi~~~i~~~~~~---~~~~~~--~~~D~Ii~t~~l~ 62 (109)
T 2l2q_A 21 VQRIEKYAKSKNINATIEAIAET---RLSEVV--DRFDVVLLAPQSR 62 (109)
T ss_dssp HHHHHHHHHHHTCSEEEEEECST---THHHHT--TTCSEEEECSCCS
T ss_pred HHHHHHHHHHCCCCeEEEEecHH---HHHhhc--CCCCEEEECCccH
Confidence 34566777778887765443222 222233 3599999987654
No 238
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1
Probab=34.95 E-value=31 Score=25.15 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=22.8
Q ss_pred EEEEEeeCChhHHHHHHHhhcCCcEEEE
Q 032042 99 VVMKIFWGDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 99 ~~~~~~~g~~~~~I~~~a~~~~~dliV~ 126 (148)
++..+..-|+..++++.|.+.++||||.
T Consensus 64 V~~Vl~alD~t~~Vv~eAi~~gadlIIt 91 (397)
T 2gx8_A 64 VRHVLIALDVTEEVVDEAIQLGANVIIA 91 (397)
T ss_dssp CCEEEEESSCCHHHHHHHHHHTCCEEEE
T ss_pred cCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence 4444445589999999999999999997
No 239
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=34.93 E-value=59 Score=17.95 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=23.4
Q ss_pred hHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..+.+...+...|+.+. . ..+. +...+..++..+|+|++...-
T Consensus 17 ~~~~l~~~L~~~g~~v~--~-~~~~-~~a~~~~~~~~~dlvi~d~~~ 59 (127)
T 2gkg_A 17 LSATLRSALEGRGFTVD--E-TTDG-KGSVEQIRRDRPDLVVLAVDL 59 (127)
T ss_dssp HHHHHHHHHHHHTCEEE--E-ECCH-HHHHHHHHHHCCSEEEEESBC
T ss_pred HHHHHHHHHHhcCceEE--E-ecCH-HHHHHHHHhcCCCEEEEeCCC
Confidence 34445555555566543 1 2233 333455566678888886543
No 240
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=34.84 E-value=68 Score=18.61 Aligned_cols=43 Identities=7% Similarity=0.142 Sum_probs=22.8
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
...+.+...+...|..+.. ..+ .+..++..+...+|+|++...
T Consensus 25 ~~~~~l~~~L~~~g~~v~~---~~~-~~~al~~~~~~~~dlvl~D~~ 67 (143)
T 3m6m_D 25 ANRMVLQRLLEKAGHKVLC---VNG-AEQVLDAMAEEDYDAVIVDLH 67 (143)
T ss_dssp HHHHHHHHHHHC--CEEEE---ESS-HHHHHHHHHHSCCSEEEEESC
T ss_pred HHHHHHHHHHHHcCCeEEE---eCC-HHHHHHHHhcCCCCEEEEeCC
Confidence 3344455555555654432 223 344455666678888888654
No 241
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=34.75 E-value=70 Score=18.71 Aligned_cols=45 Identities=4% Similarity=0.003 Sum_probs=25.5
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
....+.+...+...|+.+. . ..+..+ .++..++..+|+|++...-
T Consensus 24 ~~~~~~l~~~L~~~g~~v~--~-~~~~~~-a~~~l~~~~~dlvi~D~~l 68 (153)
T 3hv2_A 24 EVILQRLQQLLSPLPYTLH--F-ARDATQ-ALQLLASREVDLVISAAHL 68 (153)
T ss_dssp HHHHHHHHHHHTTSSCEEE--E-ESSHHH-HHHHHHHSCCSEEEEESCC
T ss_pred HHHHHHHHHHhcccCcEEE--E-ECCHHH-HHHHHHcCCCCEEEEeCCC
Confidence 3445556666666665433 2 234333 3455566778888886553
No 242
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=34.58 E-value=66 Score=21.95 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=21.0
Q ss_pred CChhHHHHHHHhhcCCcEEEEEecC
Q 032042 106 GDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 106 g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..|.+.|++.+++.++|+|.+....
T Consensus 166 ~vp~e~iv~aa~e~~~d~VglS~l~ 190 (262)
T 1xrs_B 166 QVANEDFIKKAVELEADVLLVSQTV 190 (262)
T ss_dssp SBCHHHHHHHHHHTTCSEEEEECCC
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeec
Confidence 3678999999999999999997644
No 243
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=34.50 E-value=77 Score=19.76 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=30.4
Q ss_pred hcCCCChhhHHHHHHHhhhcCceEEEEEee--CChhHHHHHHHhhcCCcEEEEEecC
Q 032042 76 YGAKPDPETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
|-........+.+.+.+.+.|+++++.-.. |...+.|-+.. .+.|-||+-.-.
T Consensus 29 YG~~Tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~--~~~dgiiINpgA 83 (153)
T 3lwz_A 29 YGYTTLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQAR--GNTDFILINPAA 83 (153)
T ss_dssp HCCCCHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHT--TTCSEEEEECGG
T ss_pred CCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh--hcCceEEEcccc
Confidence 443344556666677677777776655432 33344444432 358999995544
No 244
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=34.34 E-value=44 Score=20.65 Aligned_cols=38 Identities=18% Similarity=0.011 Sum_probs=23.7
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
+.|++-+|+.+....-+..++..++..+.+++.+.+-+
T Consensus 124 ~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~igvG~ 161 (178)
T 2xgg_A 124 KLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVLAVGH 161 (178)
T ss_dssp EEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEEECC-
T ss_pred EEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEcCC
Confidence 56777788866554434555555666777777766643
No 245
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=34.14 E-value=51 Score=22.12 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=30.7
Q ss_pred hHHHHHHHhhhcCceEEEEEe--------eCChhHHHHHHHhhcCCcEEE
Q 032042 84 TLDIVNTVARQKQIVVVMKIF--------WGDPREKICEAIDKIPLSCLV 125 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~--------~g~~~~~I~~~a~~~~~dliV 125 (148)
..+-++..++..|++++.+.. ...+...++......++|+++
T Consensus 72 ~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~ 121 (294)
T 2rc8_A 72 CIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAV 121 (294)
T ss_dssp HHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEEC
T ss_pred hHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEE
Confidence 345566666677888887654 234678888988899999986
No 246
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=34.12 E-value=97 Score=22.22 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=30.7
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
.+++.++...+..++++-++...-.......+.+.+.++|.|+++.+|..
T Consensus 193 ~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~g~GGt 242 (365)
T 3sr7_A 193 SWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGT 242 (365)
T ss_dssp HHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHTCCEEECCCBC--
T ss_pred HHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCc
Confidence 45566666666667887777432112334456677789999999766543
No 247
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=34.11 E-value=32 Score=23.73 Aligned_cols=28 Identities=4% Similarity=-0.152 Sum_probs=21.7
Q ss_pred EEEEEeeCChhHHHHHHHhhcCCcEEEE
Q 032042 99 VVMKIFWGDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 99 ~~~~~~~g~~~~~I~~~a~~~~~dliV~ 126 (148)
++.....=|+....++.|.+.++||||-
T Consensus 38 V~kIlvaLD~t~~vv~eA~~~g~dlIIt 65 (278)
T 3rxy_A 38 LKRVMMGIDIGPAELLLARQLGCDGVIA 65 (278)
T ss_dssp BSEEEEESSCCHHHHHHHHHTTCSEEEE
T ss_pred ccEEEEEECCCHHHHHHHHHcCCCEEEE
Confidence 3333333488899999999999999996
No 248
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=33.83 E-value=50 Score=20.42 Aligned_cols=40 Identities=25% Similarity=0.158 Sum_probs=30.9
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCC
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~ 44 (148)
.+.++|.+..|..+...++.+ ..++..|+++.++.-.+..
T Consensus 96 ~~d~vI~iS~sG~t~~~~~~~-~~ak~~g~~vi~IT~~~~s 135 (183)
T 2xhz_A 96 PQDVVIAISNSGESSEITALI-PVLKRLHVPLICITGRPES 135 (183)
T ss_dssp TTCEEEEECSSSCCHHHHHHH-HHHHTTTCCEEEEESCTTS
T ss_pred CCCEEEEEeCCCCCHHHHHHH-HHHHHCCCCEEEEECCCCC
Confidence 467899999998888777555 4578889999888776544
No 249
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=33.80 E-value=52 Score=20.59 Aligned_cols=38 Identities=16% Similarity=-0.000 Sum_probs=26.7
Q ss_pred cEEEEEecC-CHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 5 RRVGVAVDF-SACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 5 ~~ILv~~d~-s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
++||+.+.. ..++..+++...+-+...+.++.++.+.+
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 467765543 34677888888887777788888777644
No 250
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=33.76 E-value=65 Score=18.09 Aligned_cols=44 Identities=5% Similarity=-0.023 Sum_probs=24.0
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
...+.+.+.+.+.|..+.. ..+. +...+.+++..+|+|++...-
T Consensus 17 ~~~~~l~~~L~~~g~~v~~---~~~~-~~a~~~l~~~~~dlii~d~~l 60 (132)
T 3lte_A 17 AMAAAIERVLKRDHWQVEI---AHNG-FDAGIKLSTFEPAIMTLDLSM 60 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESSH-HHHHHHHHHTCCSEEEEESCB
T ss_pred HHHHHHHHHHHHCCcEEEE---eCCH-HHHHHHHHhcCCCEEEEecCC
Confidence 3344455555555664431 2233 334455666778888886553
No 251
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=33.48 E-value=1.2e+02 Score=21.16 Aligned_cols=42 Identities=12% Similarity=0.315 Sum_probs=23.6
Q ss_pred HHHHHHHhhhcCceEEEEEeeC-ChhHHHHHHHhhcCCcEEEE
Q 032042 85 LDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~ 126 (148)
.+.+.+.+.+.++++....... .....+.+.+...++|+||+
T Consensus 46 ~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv 88 (332)
T 2bon_A 46 LREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIA 88 (332)
T ss_dssp HHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEE
Confidence 3456666777787776655432 23344444444456787665
No 252
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=33.45 E-value=47 Score=23.11 Aligned_cols=41 Identities=15% Similarity=0.030 Sum_probs=27.1
Q ss_pred HHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 88 VNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+.+.+.+.|+++...- .-...++.+..++.++|+||+...+
T Consensus 45 v~~~A~~~gIpv~~~~--~~~~~~~~~~l~~~~~Dliv~~~y~ 85 (305)
T 2bln_A 45 VARLAAERGIPVYAPD--NVNHPLWVERIAQLSPDVIFSFYYR 85 (305)
T ss_dssp HHHHHHHHTCCEECCS--CCCSHHHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHHHcCCCEECCC--cCCcHHHHHHHHhcCCCEEEEeccc
Confidence 4555667788854321 1113467788888999999997665
No 253
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=33.44 E-value=52 Score=20.32 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=31.0
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCC
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~ 44 (148)
..+.++|.+..+..+...++.+ +.++..|+++.++...+..
T Consensus 81 ~~~d~vi~iS~sG~t~~~~~~~-~~ak~~g~~vi~IT~~~~s 121 (180)
T 1jeo_A 81 EKDDLLILISGSGRTESVLTVA-KKAKNINNNIIAIVCECGN 121 (180)
T ss_dssp CTTCEEEEEESSSCCHHHHHHH-HHHHTTCSCEEEEESSCCG
T ss_pred CCCCEEEEEeCCCCcHHHHHHH-HHHHHCCCcEEEEeCCCCh
Confidence 3467899999988887776654 5688889999888776543
No 254
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=33.35 E-value=56 Score=20.51 Aligned_cols=41 Identities=20% Similarity=0.054 Sum_probs=25.7
Q ss_pred CCCccEEEEEecCC---HhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 1 MDGTRRVGVAVDFS---ACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 1 m~~~~~ILv~~d~s---~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
|+..++||+..... ..+...++.+...+. .+.++.++.+.+
T Consensus 3 m~~~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~ 46 (193)
T 1rtt_A 3 LSDDIKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISG 46 (193)
T ss_dssp ----CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTT
T ss_pred CCCCceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHH
Confidence 33445788766542 467788888888776 577887766544
No 255
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=33.20 E-value=70 Score=20.25 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=29.2
Q ss_pred HHHHHHHhhhcC-ceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 85 LDIVNTVARQKQ-IVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
.+.++..++..| +++++... +...+++..+..++|+++-+
T Consensus 34 ~dl~~~i~~~~g~~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 74 (246)
T 4eq9_A 34 IEVVRAIFKDSDKYDVKFEKT---EWSGVFAGLDADRYNMAVNN 74 (246)
T ss_dssp HHHHHHHHTTCSSEEEEEEEC---CHHHHHHHHHTTSCSEECSS
T ss_pred HHHHHHHHHHcCCceEEEEeC---CHHHHHHHHhCCCcCEEecc
Confidence 345566666778 88777654 67788888889999997643
No 256
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=33.19 E-value=57 Score=21.06 Aligned_cols=42 Identities=2% Similarity=-0.039 Sum_probs=30.0
Q ss_pred HHHHHHHhhhcCceEEEEEee---------CChhHHHHHHHhhcCCcEEEE
Q 032042 85 LDIVNTVARQKQIVVVMKIFW---------GDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~---------g~~~~~I~~~a~~~~~dliV~ 126 (148)
.+-+...++..|+++++.... ..+...++...+..++|+++-
T Consensus 34 ~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g~~D~~~~ 84 (265)
T 2v3u_A 34 IDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGIS 84 (265)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTSCSEECS
T ss_pred HHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcCCcCeEEe
Confidence 344555566668888887642 246778888889999999873
No 257
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=33.08 E-value=79 Score=19.57 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=29.3
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
.+.++..++..|++++.... +...+.+..+..++|+++-+
T Consensus 29 ~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 68 (227)
T 3tql_A 29 ADIVKAVCKQMQAVCTISNQ---PWDSLIPSLKLGKFDALFGG 68 (227)
T ss_dssp HHHHHHHHHHTTCEEEEEEC---CHHHHHHHHHHTSCSEECSS
T ss_pred HHHHHHHHHHhCCeEEEEeC---CHHHHHHHHhCCCCCEEEec
Confidence 34455666677888887653 67788888888999998643
No 258
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=33.03 E-value=68 Score=20.23 Aligned_cols=38 Identities=8% Similarity=0.172 Sum_probs=27.3
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEE
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~ 126 (148)
+.++..++..|++++.... +...++...+..++|+++-
T Consensus 32 dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~ 69 (239)
T 1lst_A 32 DLGNEMCKRMQVKCTWVAS---DFDALIPSLKAKKIDAIIS 69 (239)
T ss_dssp HHHHHHHHHHTCEEEEEEC---CGGGHHHHHHTTSCSEECS
T ss_pred HHHHHHHHHHCCeEEEEeC---CHHHHHHHHhCCCCCEEEE
Confidence 3445555566888777653 6777888888899999864
No 259
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=32.86 E-value=61 Score=20.49 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=28.2
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
+.++..++..|++++.... +...+++..+..++|+++.+
T Consensus 43 dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 81 (239)
T 3kbr_A 43 DMAQRLAESLGAKLVVVPT---SWPNLMRDFADDRFDIAMSG 81 (239)
T ss_dssp HHHHHHHHHTTCEEEEEEC---CTTTHHHHHHTTCCSEECSS
T ss_pred HHHHHHHHHHCCceEEEEe---CHHHHHHHHHCCCcCEEEeC
Confidence 4455556667888887654 67777788888999998654
No 260
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=32.83 E-value=52 Score=19.26 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=16.1
Q ss_pred CCCccEEEEEecCCHhHHHHHHHHHh
Q 032042 1 MDGTRRVGVAVDFSACSKKALQWAAD 26 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~ 26 (148)
|++..+||| +|.++.....+...+.
T Consensus 1 M~~~~~ILi-vdd~~~~~~~l~~~L~ 25 (151)
T 3kcn_A 1 MSLNERILL-VDDDYSLLNTLKRNLS 25 (151)
T ss_dssp --CCCEEEE-ECSCHHHHHHHHHHHT
T ss_pred CCCCCeEEE-EeCCHHHHHHHHHHhc
Confidence 677788888 6666666666666654
No 261
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=32.74 E-value=79 Score=24.34 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=32.0
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..+...++..|.++.. +-...|.+.|++.+++.++|+|.+....
T Consensus 116 ~iva~~L~~~G~eVi~-LG~~vP~e~iv~aa~~~~~diVgLS~l~ 159 (579)
T 3bul_A 116 NIVGVVLQCNNYEIVD-LGVMVPAEKILRTAKEVNADLIGLSGLI 159 (579)
T ss_dssp HHHHHHHHTTTCEEEE-CCSSBCHHHHHHHHHHHTCSEEEEECCS
T ss_pred HHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEEecC
Confidence 3455666777887543 2234779999999999999999997643
No 262
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=32.56 E-value=1.3e+02 Score=21.30 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=27.4
Q ss_pred hHHHHHHHhhhcCceEEEEE-eeCCh----hHHHHHHHhhcCCcEEE-EEe
Q 032042 84 TLDIVNTVARQKQIVVVMKI-FWGDP----REKICEAIDKIPLSCLV-IGN 128 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~g~~----~~~I~~~a~~~~~dliV-~g~ 128 (148)
..+.+.+.+.+.|+++...- ..++| .+.+.+.+++.++|+|| +|.
T Consensus 57 ~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 107 (371)
T 1o2d_A 57 SLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGG 107 (371)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEES
T ss_pred HHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 35556666666677643321 23343 46666777888999888 553
No 263
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=32.27 E-value=66 Score=20.44 Aligned_cols=40 Identities=5% Similarity=0.078 Sum_probs=28.7
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
.+.++..++..|+++++... +...++...+..++|+++.+
T Consensus 32 ~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 32 RELGDELCKRAGLTCEWVKN---DWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp HHHHHHHHHHHTCCEEEEEC---CGGGHHHHHHTTSCSEECSS
T ss_pred HHHHHHHHHHcCCceEEEEC---CHHHHHHHHHCCCCCEEEeC
Confidence 34455556666888887663 67778888888999987644
No 264
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=32.21 E-value=75 Score=18.29 Aligned_cols=41 Identities=7% Similarity=0.009 Sum_probs=21.7
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+.+...+...|+.+. . ..+. +..++..++..+|+||+...-
T Consensus 22 ~~l~~~L~~~g~~v~--~-~~~~-~~a~~~l~~~~~dlii~d~~l 62 (147)
T 2zay_A 22 AASISALSQEGFDII--Q-CGNA-IEAVPVAVKTHPHLIITEANM 62 (147)
T ss_dssp HHHHHHHHHHTEEEE--E-ESSH-HHHHHHHHHHCCSEEEEESCC
T ss_pred HHHHHHHHHcCCeEE--E-eCCH-HHHHHHHHcCCCCEEEEcCCC
Confidence 334444444565433 1 2333 334455566678888887543
No 265
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=32.19 E-value=62 Score=21.76 Aligned_cols=39 Identities=10% Similarity=-0.010 Sum_probs=25.8
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecC
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~ 43 (148)
+.|++-+|+.+.....+..++..++..+..|+.+.+-..
T Consensus 130 ~~iillTDG~~~d~~~~~~~~~~l~~~gv~i~~igiG~~ 168 (281)
T 4hqf_A 130 QLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQG 168 (281)
T ss_dssp EEEEEEESSCCSCHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 457777888765543444455556677888888887553
No 266
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=32.02 E-value=72 Score=18.05 Aligned_cols=8 Identities=0% Similarity=0.173 Sum_probs=4.7
Q ss_pred CcEEEEEe
Q 032042 121 LSCLVIGN 128 (148)
Q Consensus 121 ~dliV~g~ 128 (148)
+|+|++..
T Consensus 53 ~dlvi~D~ 60 (136)
T 3hdv_A 53 IGLMITDL 60 (136)
T ss_dssp EEEEEECS
T ss_pred CcEEEEec
Confidence 66666643
No 267
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=31.93 E-value=29 Score=25.02 Aligned_cols=28 Identities=7% Similarity=-0.092 Sum_probs=22.4
Q ss_pred EEEEEeeCChhHHHHHHHhhcCCcEEEE
Q 032042 99 VVMKIFWGDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 99 ~~~~~~~g~~~~~I~~~a~~~~~dliV~ 126 (148)
++..+..-|+..++++.|.+.++||||.
T Consensus 40 V~~Vl~alD~t~~Vv~eAi~~~adlIIt 67 (370)
T 2nyd_A 40 VTGVLTALDCTLEVVNEAIEKGYNTIIS 67 (370)
T ss_dssp CCCEEEESSCCHHHHHHHHHHTCCEEEE
T ss_pred cCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence 3444444588999999999999999997
No 268
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=31.91 E-value=89 Score=19.37 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=28.1
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHH---hhcCCcEEEEEecC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAI---DKIPLSCLVIGNRG 130 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a---~~~~~dliV~g~~~ 130 (148)
+...+.+++.+.+.|+++++.- .+-.-+|++.+ ...+.|-||+-.-.
T Consensus 27 ~di~~~l~~~a~~~g~~v~~~Q--SN~EgeLId~Ih~a~~~~~dgiIINpgA 76 (149)
T 2uyg_A 27 EELEALCEAWGAELGLGVVFRQ--TNYEGQLIEWVQQAHQEGFLAIVLNPGA 76 (149)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEE--CSCHHHHHHHHHHTTTTTCSEEEEECGG
T ss_pred HHHHHHHHHHHHHcCCEEEEEe--eCCHHHHHHHHHHhccCCeeEEEEccch
Confidence 4556667777777788766544 44444444443 33348899995443
No 269
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=31.86 E-value=73 Score=18.06 Aligned_cols=41 Identities=7% Similarity=0.111 Sum_probs=20.4
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
.+.+...+...|+.+. . ..+ .+..++..++..+|+|++...
T Consensus 16 ~~~l~~~L~~~g~~v~--~-~~~-~~~a~~~l~~~~~dlvi~d~~ 56 (140)
T 2qr3_A 16 LTAVQLLLKNHFSKVI--T-LSS-PVSLSTVLREENPEVVLLDMN 56 (140)
T ss_dssp HHHHHHHHTTTSSEEE--E-ECC-HHHHHHHHHHSCEEEEEEETT
T ss_pred HHHHHHHHHhCCcEEE--E-eCC-HHHHHHHHHcCCCCEEEEeCC
Confidence 3445555554555433 1 123 333445555566777777654
No 270
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=31.75 E-value=66 Score=20.07 Aligned_cols=48 Identities=8% Similarity=0.062 Sum_probs=28.5
Q ss_pred ChhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh--cCCcEEEEEecC
Q 032042 81 DPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVIGNRG 130 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliV~g~~~ 130 (148)
.+...+.+.+.+.+.|+++++.- .+-.-+|++.+++ .+.|-||+-.-.
T Consensus 28 l~di~~~l~~~a~~~g~~l~~~Q--SN~EGeLId~Ih~a~~~~dgiIINpgA 77 (154)
T 1uqr_A 28 LSDIEQHLQQSAQAQGYELDYFQ--ANGEESLINRIHQAFQNTDFIIINPGA 77 (154)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE--CSSHHHHHHHHHHTTTTCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEe--eCCHHHHHHHHHHhhhcCcEEEECcch
Confidence 45566667777777787766544 4444444444332 248889985443
No 271
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=31.73 E-value=81 Score=18.57 Aligned_cols=47 Identities=6% Similarity=-0.012 Sum_probs=27.0
Q ss_pred ChhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhc--CCcEEEEEecC
Q 032042 81 DPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKI--PLSCLVIGNRG 130 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~--~~dliV~g~~~ 130 (148)
.....+.+...+...|+.+.. ...+..+ .++.+++. .+|+|++...-
T Consensus 45 ~~~~~~~l~~~L~~~g~~v~~--~~~~~~~-al~~l~~~~~~~dliilD~~l 93 (157)
T 3hzh_A 45 SVFTVKQLTQIFTSEGFNIID--TAADGEE-AVIKYKNHYPNIDIVTLXITM 93 (157)
T ss_dssp CHHHHHHHHHHHHHTTCEEEE--EESSHHH-HHHHHHHHGGGCCEEEECSSC
T ss_pred CHHHHHHHHHHHHhCCCeEEE--EECCHHH-HHHHHHhcCCCCCEEEEeccC
Confidence 345556667777666766521 2234333 34455555 68999997553
No 272
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=31.41 E-value=77 Score=20.56 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=28.2
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEE
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLV 125 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV 125 (148)
.+.++..++..|+++++... +...+++..+..++|+++
T Consensus 48 ~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~ 85 (268)
T 3hv1_A 48 IDLANAVFKLYGIDVEWQAI---DWDMKETELKNGTIDLIW 85 (268)
T ss_dssp HHHHHHHHHTTTCEEEEEEC---CGGGHHHHHHHTSCSEEC
T ss_pred HHHHHHHHHHhCCcEEEEEC---CHHHHHHHHHCCCCCEEE
Confidence 34455556667888887664 477788888889999887
No 273
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=31.20 E-value=1.2e+02 Score=20.15 Aligned_cols=50 Identities=8% Similarity=0.008 Sum_probs=33.3
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeC--Chh--HHHHHHHhhcCCcEEEEEecCCC
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWG--DPR--EKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g--~~~--~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
...+.+.+.+++.|+.+......+ ++. ...++.+...++|-||+......
T Consensus 22 ~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 22 SVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 556667777778888877655544 543 34556666678999888765444
No 274
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=31.18 E-value=44 Score=21.28 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=31.7
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCC
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~ 44 (148)
....++|.+..|..+...++.+ ..|+..+++++++...+..
T Consensus 88 ~~~DvvI~iS~SG~t~~~i~~~-~~ak~~g~~vI~IT~~~~s 128 (200)
T 1vim_A 88 TDQDVLVGISGSGETTSVVNIS-KKAKDIGSKLVAVTGKRDS 128 (200)
T ss_dssp CTTCEEEEECSSSCCHHHHHHH-HHHHHHTCEEEEEESCTTS
T ss_pred CCCCEEEEEeCCCCcHHHHHHH-HHHHHCCCeEEEEECCCCC
Confidence 3467899999998888877655 4578889999988876544
No 275
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=31.17 E-value=44 Score=20.59 Aligned_cols=58 Identities=14% Similarity=0.010 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHHhhhc
Q 032042 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (148)
Q Consensus 16 ~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (148)
-..+|++-..+.+++.+++-+++|.+.--.. ...+. +.+.+.+..+.+.++..
T Consensus 56 vv~~av~eI~~~a~kv~~~~ivlYPyAHLSs-------------~La~P--------------~~A~~iL~~le~~L~~~ 108 (143)
T 2hl0_A 56 VSLKAIEEISKVAEQVKAENVFVYPFAHLSS-------------ELAKP--------------SVAMDILNRVYQGLKER 108 (143)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEECGGGCS-------------SBCCH--------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeccccccC-------------ccCCh--------------HHHHHHHHHHHHHHHhC
Confidence 3457888888999999999999998775321 11110 02357788888888877
Q ss_pred CceEE
Q 032042 96 QIVVV 100 (148)
Q Consensus 96 ~~~~~ 100 (148)
|+++.
T Consensus 109 g~eV~ 113 (143)
T 2hl0_A 109 GFNVG 113 (143)
T ss_dssp TCEEE
T ss_pred CCeEE
Confidence 76543
No 276
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=31.04 E-value=80 Score=22.65 Aligned_cols=48 Identities=6% Similarity=0.110 Sum_probs=33.1
Q ss_pred hHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCC
Q 032042 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL 131 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~ 131 (148)
..+.++...+..++++-++...+.......+.+.+.++|.|+++.+|.
T Consensus 175 ~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GG 222 (368)
T 3vkj_A 175 ALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGG 222 (368)
T ss_dssp HHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTS
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCC
Confidence 566666666666788777654323345566778889999999977654
No 277
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=30.90 E-value=68 Score=21.23 Aligned_cols=45 Identities=2% Similarity=-0.003 Sum_probs=31.1
Q ss_pred HHHHHHHhhhcCceEEEEEeeC-ChhHHHHHHHhhcCCcEEEEEec
Q 032042 85 LDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
...+...+.-.++++....... +..+..++.+++.++++||=|..
T Consensus 118 ~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVVG~~~ 163 (225)
T 2pju_A 118 IPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGL 163 (225)
T ss_dssp CHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred hhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCCEEECCHH
Confidence 3344555555577777776654 55788888899999999876643
No 278
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=30.78 E-value=1.4e+02 Score=21.03 Aligned_cols=46 Identities=9% Similarity=-0.010 Sum_probs=25.4
Q ss_pred hhHHHHHHHhhhcCceEEEEEee--C-ChhHHHHHHHhhcCCcEEEEEe
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFW--G-DPREKICEAIDKIPLSCLVIGN 128 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~--g-~~~~~I~~~a~~~~~dliV~g~ 128 (148)
...+.+.+.+++.|+++...... + .-...++..++..++|.|+++.
T Consensus 179 ~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~ 227 (419)
T 3h5l_A 179 NIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTH 227 (419)
T ss_dssp HHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcc
Confidence 34455666666667665443321 2 2245555666666777777753
No 279
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=30.59 E-value=1.4e+02 Score=21.03 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=33.3
Q ss_pred hhhHHHHHHHhhhc-CceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 82 PETLDIVNTVARQK-QIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+...+.+.+.+.+. +.++++... .-.+.+.+++++..+|+++++..-
T Consensus 31 ~~Y~~~l~~y~~~~~~~~~~v~~f--t~~e~~~~~~~~~~~dilli~e~~ 78 (373)
T 3fkq_A 31 KEYLDRLTGVFNTKYADKLEVYSF--TDEKNAIESVKEYRIDVLIAEEDF 78 (373)
T ss_dssp HHHHHHHHHHHHHHTTTTEEEEEE--SCHHHHHHHHHHHTCSEEEEETTC
T ss_pred HHHHHHHHHHHhhccCCceEEEEE--CCHHHHHHHHhcCCCCEEEEcchh
Confidence 45556666666443 667777665 346778889999999999998654
No 280
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=30.56 E-value=56 Score=22.09 Aligned_cols=41 Identities=5% Similarity=0.083 Sum_probs=29.5
Q ss_pred HHHHHHHhhhcCceEEEEEee----------CChhHHHHHHHhhcCCcEEE
Q 032042 85 LDIVNTVARQKQIVVVMKIFW----------GDPREKICEAIDKIPLSCLV 125 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~----------g~~~~~I~~~a~~~~~dliV 125 (148)
.+.++..++..|+++++.... ..+...++...+..++|+++
T Consensus 46 vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~ 96 (312)
T 1yae_A 46 IDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAV 96 (312)
T ss_dssp HHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHHHTTSCSEEC
T ss_pred HHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHHHhCCCcCEEe
Confidence 344556666678888887542 24567888888999999986
No 281
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=30.41 E-value=1.2e+02 Score=20.24 Aligned_cols=51 Identities=18% Similarity=0.030 Sum_probs=32.4
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChh--HHHHHHHhhcCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
....+.+.+.+++.|+.+......+++. ..+++.+...++|-||+......
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 70 (313)
T 3m9w_A 18 QKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQ 70 (313)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTT
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 3556667777777788766655444543 34556666678888887655443
No 282
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=30.30 E-value=87 Score=19.49 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=27.2
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEE
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~ 126 (148)
+.+...++..|++++.... +...+.+..+..++|+++-
T Consensus 34 dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~ 71 (229)
T 2y7i_A 34 DVANAVCKEMQAECSFTNQ---SFDSLIPSLRFKKFDAVIA 71 (229)
T ss_dssp HHHHHHHHHTTCEEEEEEC---CGGGHHHHHHTTSCSEECS
T ss_pred HHHHHHHHHhCCeEEEEEc---CHHHHHHHHhCCCceEEEe
Confidence 3455555666888877663 5677778888889998863
No 283
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=30.08 E-value=65 Score=21.10 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=28.1
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
+.++..++..|+++++... +...++...+..++|+++.+
T Consensus 52 dl~~~i~~~~g~~v~~~~~---~~~~~~~~l~~G~~D~~~~~ 90 (271)
T 2iee_A 52 EVVREAAKRLGLKVEFKEM---GIDGMLTAVNSGQVDAAAND 90 (271)
T ss_dssp HHHHHHHHHTTCEEEEEEC---CSTTHHHHHHHTSSSEECSS
T ss_pred HHHHHHHHHcCCeEEEEEC---CHHHHHHHHHCCCcCEEEeC
Confidence 3455556667888887664 56677788888899988754
No 284
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=29.81 E-value=46 Score=21.35 Aligned_cols=40 Identities=10% Similarity=-0.079 Sum_probs=27.1
Q ss_pred HHhhh-cCceEEEEEeeCC-hhHHHHHHHhhcCCcEEEEEec
Q 032042 90 TVARQ-KQIVVVMKIFWGD-PREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 90 ~~~~~-~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~g~~ 129 (148)
+.+++ .|++++....... -...|.+.+++.++|+||--+.
T Consensus 66 ~~L~e~~Gl~v~~v~k~~eGG~pqI~d~I~~geIdlVInt~d 107 (178)
T 1vmd_A 66 ALLQEKLGLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIFFWD 107 (178)
T ss_dssp HHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTSCCEEEEECC
T ss_pred HHHHHHhCceeEEEeecCCCCCchHHHHHHCCCccEEEEccC
Confidence 33444 6888766432111 2347999999999999998665
No 285
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=29.67 E-value=48 Score=22.19 Aligned_cols=77 Identities=12% Similarity=-0.028 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHHhhhc
Q 032042 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (148)
Q Consensus 16 ~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (148)
.+...++.++++|...|++..++|.-..+. . .+ +.++ ...+.+..+.+.+++.
T Consensus 99 ~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~-------------------~--~~-~~~~-----~~~~~l~~l~~~a~~~ 151 (290)
T 3tva_A 99 SRVAEMKEISDFASWVGCPAIGLHIGFVPE-------------------S--SS-PDYS-----ELVRVTQDLLTHAANH 151 (290)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEECCCCCCC-------------------T--TS-HHHH-----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCCCCcc-------------------c--ch-HHHH-----HHHHHHHHHHHHHHHc
Confidence 455778889999999999988876421110 0 00 0121 1235566777777777
Q ss_pred CceEEEEEeeCChhHHHHHHHhhcC
Q 032042 96 QIVVVMKIFWGDPREKICEAIDKIP 120 (148)
Q Consensus 96 ~~~~~~~~~~g~~~~~I~~~a~~~~ 120 (148)
|+.+-.+-.. +..+.+.+..+..+
T Consensus 152 Gv~l~lE~~~-~~~~~~~~l~~~~~ 175 (290)
T 3tva_A 152 GQAVHLETGQ-ESADHLLEFIEDVN 175 (290)
T ss_dssp TCEEEEECCS-SCHHHHHHHHHHHC
T ss_pred CCEEEEecCC-CCHHHHHHHHHhcC
Confidence 8875554433 23445555555543
No 286
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=29.64 E-value=83 Score=18.01 Aligned_cols=42 Identities=2% Similarity=-0.065 Sum_probs=20.1
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
.+.+...+...|+.+.. ..+..+++....+...+|+|++...
T Consensus 18 ~~~l~~~L~~~g~~v~~---~~~~~~a~~~l~~~~~~dlvi~D~~ 59 (140)
T 3h5i_A 18 AKTIANILNKYGYTVEI---ALTGEAAVEKVSGGWYPDLILMDIE 59 (140)
T ss_dssp HHHHHHHHHHTTCEEEE---ESSHHHHHHHHHTTCCCSEEEEESS
T ss_pred HHHHHHHHHHcCCEEEE---ecChHHHHHHHhcCCCCCEEEEecc
Confidence 34445555555554331 2343444333323356777777654
No 287
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=29.59 E-value=1e+02 Score=19.13 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=14.2
Q ss_pred HHHHHHhhcCCcEEEEEecCCC
Q 032042 111 KICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 111 ~I~~~a~~~~~dliV~g~~~~~ 132 (148)
.+.+...+ +|.||+|+.-..
T Consensus 79 ~~~~~l~~--aD~iv~~~P~y~ 98 (201)
T 1t5b_A 79 ELIAELKA--HDVIVIAAPMYN 98 (201)
T ss_dssp HHHHHHHH--CSEEEEECCCBT
T ss_pred HHHHHHHh--CCEEEEEeCccc
Confidence 34455555 999999988744
No 288
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=29.55 E-value=45 Score=21.95 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=31.0
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
...++|.+..|..+...++.+ ..|+..|++++.+.-.+
T Consensus 108 ~~Dv~I~iS~SG~t~~~i~~~-~~Ak~~G~~vI~IT~~~ 145 (243)
T 3cvj_A 108 NKDVIMIISNSGRNTVPVEMA-IESRNIGAKVIAMTSMK 145 (243)
T ss_dssp TTCEEEEECSSCCSHHHHHHH-HHHHHHTCEEEEEECHH
T ss_pred CCCEEEEEeCCCCCHHHHHHH-HHHHHCCCEEEEEeCCc
Confidence 467899999999888888755 45888899999988764
No 289
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=29.46 E-value=84 Score=19.99 Aligned_cols=39 Identities=5% Similarity=0.137 Sum_probs=28.1
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEE
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~ 126 (148)
.+.++..++..|+++++... +...+++..+..++|+++-
T Consensus 32 ~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~ 70 (245)
T 3k4u_A 32 VDLAREMAKAMGVKLKLVPT---SWDGLIPGLVTEKFDIIIS 70 (245)
T ss_dssp HHHHHHHHHHHTCEEEEEEC---CGGGHHHHHHTTSCSEECS
T ss_pred HHHHHHHHHHhCCeEEEEEc---cHHHHHHHHhCCCcCEEEe
Confidence 34455556666888887664 5777888888899999754
No 290
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=29.45 E-value=1.3e+02 Score=22.50 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=33.8
Q ss_pred EEEEEeeCChhHHHHH--HHhhcCCcEEEE-EecCCCccceeecccccc
Q 032042 99 VVMKIFWGDPREKICE--AIDKIPLSCLVI-GNRGLGKLKRLDFINIEL 144 (148)
Q Consensus 99 ~~~~~~~g~~~~~I~~--~a~~~~~dliV~-g~~~~~~~~~~~~Gs~a~ 144 (148)
+-+.+..|+..+.|.+ .|..+++|.|.+ -+.|.|.+..+.-|.|.+
T Consensus 153 iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRttgQSllDyvp~GaT~e 201 (516)
T 1xrs_A 153 LYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYGATTE 201 (516)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSSCCCSCCSC
T ss_pred EEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcccCCCCCCC
Confidence 5555667899988877 478899997754 566677777777776654
No 291
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=29.42 E-value=74 Score=20.32 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=25.0
Q ss_pred CCCccEEEEEecCC---HhHHHHHHHHHhhcccCCCEEEEEEEe
Q 032042 1 MDGTRRVGVAVDFS---ACSKKALQWAADNVVRNGDHLILVTVV 41 (148)
Q Consensus 1 m~~~~~ILv~~d~s---~~s~~al~~a~~la~~~~~~v~ll~v~ 41 (148)
|| ++|+|-+... +.+...++++..++. .+.++.++...
T Consensus 1 M~--k~I~vi~GS~R~~S~~~~la~~~~~~~~-~~~~~~~idl~ 41 (190)
T 3u7r_A 1 MV--KTVAVMVGSLRKDSLNHKLMKVLQKLAE-GRLEFHLLHIG 41 (190)
T ss_dssp -C--EEEEEEESCCSTTCHHHHHHHHHHHHHT-TTEEEEECCGG
T ss_pred CC--CEEEEEECCCCCCCHHHHHHHHHHHhcc-CCCEEEEEecc
Confidence 66 8888866532 355678888888775 36777776543
No 292
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=29.26 E-value=41 Score=21.62 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=30.2
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecC
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~ 43 (148)
.+.++|.+..|.++...++.+ ..|+..|++++.+.-.+.
T Consensus 131 ~~DvvI~iS~SG~t~~~i~~~-~~ak~~G~~vIaIT~~~~ 169 (212)
T 2i2w_A 131 EGDVLLGISTSGNSANVIKAI-AAAREKGMKVITLTGKDG 169 (212)
T ss_dssp TTCEEEEECSSSCCHHHHHHH-HHHHHHTCEEEEEEETTC
T ss_pred CCCEEEEEECCCCCHHHHHHH-HHHHHCCCeEEEEECCCC
Confidence 467899999998887777654 558888999988877654
No 293
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=29.23 E-value=1.4e+02 Score=20.54 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=22.8
Q ss_pred eEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 98 VVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 98 ~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
.+...+..|-..+.|.++++. ++|.|.+|+--++
T Consensus 241 ~v~ieaSGGIt~~~i~~~a~t-GVD~isvG~l~~~ 274 (284)
T 1qpo_A 241 TVMLESSGGLSLQTAATYAET-GVDYLAVGALTHS 274 (284)
T ss_dssp TCEEEEESSCCTTTHHHHHHT-TCSEEECGGGTSS
T ss_pred CeEEEEECCCCHHHHHHHHhc-CCCEEEECHHHcC
Confidence 344545445447788787764 7999999985443
No 294
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=29.11 E-value=1e+02 Score=19.13 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=26.4
Q ss_pred EEEEEecC-CHhHHHHHHHHHhhccc-CCCEEEEEEEec
Q 032042 6 RVGVAVDF-SACSKKALQWAADNVVR-NGDHLILVTVVP 42 (148)
Q Consensus 6 ~ILv~~d~-s~~s~~al~~a~~la~~-~~~~v~ll~v~~ 42 (148)
+||+.+.. ..++..+++...+-+.. .+.++.++.+.+
T Consensus 3 kilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~ 41 (198)
T 3b6i_A 3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPE 41 (198)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCC
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccc
Confidence 56665543 34677888888887776 788888888764
No 295
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=29.01 E-value=1.6e+02 Score=21.10 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=22.3
Q ss_pred HhHHHHHHHHHhhcccC-CCEEEEEEEec
Q 032042 15 ACSKKALQWAADNVVRN-GDHLILVTVVP 42 (148)
Q Consensus 15 ~~s~~al~~a~~la~~~-~~~v~ll~v~~ 42 (148)
..+++.+++|.++|++. ..+|+++|=..
T Consensus 163 ~~~eRiar~AFe~A~~r~rkkVt~v~KaN 191 (354)
T 3blx_B 163 DASERVIRYAFEYARAIGRPRVIVVHKST 191 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEESCT
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 46788999999999886 57788887654
No 296
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=28.95 E-value=85 Score=17.89 Aligned_cols=42 Identities=2% Similarity=0.038 Sum_probs=22.4
Q ss_pred hHHHHHHHhhh-cCceEEEEEeeCChhHHHHHHHhh-cCCcEEEEEec
Q 032042 84 TLDIVNTVARQ-KQIVVVMKIFWGDPREKICEAIDK-IPLSCLVIGNR 129 (148)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~~~~~~g~~~~~I~~~a~~-~~~dliV~g~~ 129 (148)
..+.+...+.. .|+.+. . ..+. +..++.+++ ..+|+|++...
T Consensus 16 ~~~~l~~~L~~~~~~~v~--~-~~~~-~~a~~~l~~~~~~dlvi~D~~ 59 (140)
T 3lua_A 16 EREKTKIIFDNIGEYDFI--E-VENL-KKFYSIFKDLDSITLIIMDIA 59 (140)
T ss_dssp HHHHHHHHHHHHCCCEEE--E-ECSH-HHHHTTTTTCCCCSEEEECSC
T ss_pred HHHHHHHHHHhccCccEE--E-ECCH-HHHHHHHhcCCCCcEEEEeCC
Confidence 34445555555 566443 1 2233 334455556 77888887654
No 297
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=28.78 E-value=75 Score=20.91 Aligned_cols=45 Identities=9% Similarity=-0.074 Sum_probs=21.7
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
....+.+++.|..+-..+..+++.+.+..+.. ++|+|.+++...+
T Consensus 102 ~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~--~~D~v~~msv~pg 146 (230)
T 1tqj_A 102 HRTLCQIRELGKKAGAVLNPSTPLDFLEYVLP--VCDLILIMSVNPG 146 (230)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCCGGGGTTTGG--GCSEEEEESSCC-
T ss_pred HHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHh--cCCEEEEEEeccc
Confidence 33444445555555444433445455444444 3666666555444
No 298
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=28.62 E-value=90 Score=20.47 Aligned_cols=79 Identities=9% Similarity=0.124 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHHhhhcC
Q 032042 17 SKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQKQ 96 (148)
Q Consensus 17 s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (148)
+...++.++++|...|++...+|.-.... .....+.++ ...+.+..+.+.+++.|
T Consensus 82 ~~~~~~~~i~~a~~lG~~~v~~~~g~~~~--------------------~~~~~~~~~-----~~~~~l~~l~~~a~~~g 136 (278)
T 1i60_A 82 IITEFKGMMETCKTLGVKYVVAVPLVTEQ--------------------KIVKEEIKK-----SSVDVLTELSDIAEPYG 136 (278)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCBCSS--------------------CCCHHHHHH-----HHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCCC--------------------CCCHHHHHH-----HHHHHHHHHHHHHHhcC
Confidence 35678888888988998877775321100 001011111 12455666667777778
Q ss_pred ceEEEEEeeCC-----hhHHHHHHHhhcC
Q 032042 97 IVVVMKIFWGD-----PREKICEAIDKIP 120 (148)
Q Consensus 97 ~~~~~~~~~g~-----~~~~I~~~a~~~~ 120 (148)
+.+-.+-..+. ..+.+.+.++..+
T Consensus 137 v~l~lEn~~~~~~~~~~~~~~~~l~~~~~ 165 (278)
T 1i60_A 137 VKIALEFVGHPQCTVNTFEQAYEIVNTVN 165 (278)
T ss_dssp CEEEEECCCCTTBSSCSHHHHHHHHHHHC
T ss_pred CEEEEEecCCccchhcCHHHHHHHHHHhC
Confidence 87655543322 2455556655544
No 299
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=28.53 E-value=1.6e+02 Score=21.15 Aligned_cols=27 Identities=11% Similarity=0.005 Sum_probs=20.1
Q ss_pred HhHHHHHHHHHhhcccC-------------CCEEEEEEEe
Q 032042 15 ACSKKALQWAADNVVRN-------------GDHLILVTVV 41 (148)
Q Consensus 15 ~~s~~al~~a~~la~~~-------------~~~v~ll~v~ 41 (148)
..+++.+++|.++|++. ..+|+++|--
T Consensus 162 ~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~Ka 201 (366)
T 3ty4_A 162 EASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKS 201 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECC
Confidence 46678888888888765 5678888753
No 300
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=28.46 E-value=85 Score=17.76 Aligned_cols=45 Identities=4% Similarity=-0.082 Sum_probs=24.0
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
...+.+...+...|+.+...+ .+ .+..++..++..+|+|++...-
T Consensus 20 ~~~~~l~~~L~~~g~~v~~~~--~~-~~~a~~~~~~~~~dlii~d~~~ 64 (140)
T 3cg0_A 20 LAAATLRIQLESLGYDVLGVF--DN-GEEAVRCAPDLRPDIALVDIML 64 (140)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE--SS-HHHHHHHHHHHCCSEEEEESSC
T ss_pred HHHHHHHHHHHHCCCeeEEEE--CC-HHHHHHHHHhCCCCEEEEecCC
Confidence 334445555555566543212 23 3334455556678888887553
No 301
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=28.18 E-value=1.1e+02 Score=19.37 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=24.6
Q ss_pred ceEEEEEee-CCh--hHHHHHHHhhcCCcEEEEEecCC
Q 032042 97 IVVVMKIFW-GDP--REKICEAIDKIPLSCLVIGNRGL 131 (148)
Q Consensus 97 ~~~~~~~~~-g~~--~~~I~~~a~~~~~dliV~g~~~~ 131 (148)
.++...+.. .+| .-+|++.+...++|+++++.++.
T Consensus 16 ~~l~vvLd~v~dP~NlGaI~Rta~afG~~~viv~~~~~ 53 (182)
T 3l8u_A 16 GRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGF 53 (182)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSS
T ss_pred CCEEEEEeCCCCcCcHHHHHHHHHHcCCcEEEECCCCC
Confidence 334443332 355 58899999999999999977643
No 302
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=27.98 E-value=87 Score=17.71 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=19.9
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
.+.+...+...+..+.. ..+. +...+..++..+|+|++...
T Consensus 20 ~~~l~~~L~~~~~~v~~---~~~~-~~a~~~l~~~~~dlvi~d~~ 60 (137)
T 3hdg_A 20 REWLSTIISNHFPEVWS---AGDG-EEGERLFGLHAPDVIITDIR 60 (137)
T ss_dssp HHHHHHHHHTTCSCEEE---ESSH-HHHHHHHHHHCCSEEEECSS
T ss_pred HHHHHHHHHhcCcEEEE---ECCH-HHHHHHHhccCCCEEEEeCC
Confidence 34444545444443322 1233 33344555566777777654
No 303
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=27.85 E-value=1.1e+02 Score=18.72 Aligned_cols=43 Identities=5% Similarity=-0.069 Sum_probs=23.8
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
...+.+...+...|+.+. . ..+..+ .++..+...+|+|++...
T Consensus 18 ~~~~~l~~~L~~~g~~v~--~-~~~~~~-al~~~~~~~~dlvl~D~~ 60 (184)
T 3rqi_A 18 VFAGTLARGLERRGYAVR--Q-AHNKDE-ALKLAGAEKFEFITVXLH 60 (184)
T ss_dssp HHHHHHHHHHHHTTCEEE--E-ECSHHH-HHHHHTTSCCSEEEECSE
T ss_pred HHHHHHHHHHHHCCCEEE--E-eCCHHH-HHHHHhhCCCCEEEEecc
Confidence 334445555655665431 1 234333 445667778888888543
No 304
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=27.85 E-value=1.4e+02 Score=20.39 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=32.5
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEE
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~ 126 (148)
...+..+.+.+++.|+.++.-+ +|...-++.|.+.++|.|=+
T Consensus 110 ~~~L~~~i~~L~~~GIrVSLFI---Dpd~~qi~aA~~~GAd~IEL 151 (260)
T 3o6c_A 110 HAKLKQSIEKLQNANIEVSLFI---NPSLEDIEKSKILKAQFIEL 151 (260)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEE---CSCHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHhCCCEEEE
Confidence 3456666667888899877655 57777789999999999888
No 305
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=27.77 E-value=88 Score=17.72 Aligned_cols=41 Identities=2% Similarity=0.024 Sum_probs=20.2
Q ss_pred HHHHHHHhhh-cCce-EEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 85 LDIVNTVARQ-KQIV-VVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 85 ~~~~~~~~~~-~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
.+.+...+.. .|+. +.. ..+ .+...+..++..+|+|++...
T Consensus 21 ~~~l~~~L~~~~~~~~v~~---~~~-~~~a~~~l~~~~~dlii~d~~ 63 (143)
T 3cnb_A 21 ADMLTQFLENLFPYAKIKI---AYN-PFDAGDLLHTVKPDVVMLDLM 63 (143)
T ss_dssp HHHHHHHHHHHCTTCEEEE---ECS-HHHHHHHHHHTCCSEEEEETT
T ss_pred HHHHHHHHHhccCccEEEE---ECC-HHHHHHHHHhcCCCEEEEecc
Confidence 3444555544 4554 221 123 333345555566777777654
No 306
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=27.77 E-value=1.5e+02 Score=20.52 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=32.5
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEE
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~ 126 (148)
...+..+.+.+++.|+.++.-+ +|...-++.|.+.++|.|=+
T Consensus 141 ~~~L~~~i~~L~~~GIrVSLFI---Dpd~~qI~aA~~~GAd~IEL 182 (278)
T 3gk0_A 141 FDAVRAACKQLADAGVRVSLFI---DPDEAQIRAAHETGAPVIEL 182 (278)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE---CSCHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHhCcCEEEE
Confidence 4556667777888899877655 57667779999999999877
No 307
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=27.71 E-value=68 Score=21.54 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=31.2
Q ss_pred hHHHHHHHhhhcCceEEEEEee----C----------ChhHHHHHHHhhcCCcEEEE
Q 032042 84 TLDIVNTVARQKQIVVVMKIFW----G----------DPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~----g----------~~~~~I~~~a~~~~~dliV~ 126 (148)
..+-++..++..|++++..... | .+...++......++|+++-
T Consensus 67 ~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~D~~~~ 123 (292)
T 1pb7_A 67 CIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVA 123 (292)
T ss_dssp HHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSCSEECS
T ss_pred HHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCCcCEEEe
Confidence 3455666666778998887752 1 26788889999999999873
No 308
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=27.56 E-value=78 Score=17.02 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=22.0
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+.+...+...|+.+.. ..+. +...+..++..+|++++...-
T Consensus 14 ~~~l~~~l~~~g~~v~~---~~~~-~~~~~~l~~~~~dlii~d~~~ 55 (119)
T 2j48_A 14 ATVVCEMLTAAGFKVIW---LVDG-STALDQLDLLQPIVILMAWPP 55 (119)
T ss_dssp HHHHHHHHHHTTCEEEE---ESCH-HHHHHHHHHHCCSEEEEECST
T ss_pred HHHHHHHHHhCCcEEEE---ecCH-HHHHHHHHhcCCCEEEEecCC
Confidence 34455555555654332 2233 334455555678888886543
No 309
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=27.35 E-value=70 Score=20.39 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=27.1
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh---cCCcEEEEEec
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK---IPLSCLVIGNR 129 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dliV~g~~ 129 (148)
....+.+++.+...|+.-.+.+..++..+.+.+.... ..+|+|++...
T Consensus 104 ~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~ 154 (229)
T 2avd_A 104 AQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD 154 (229)
T ss_dssp SHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC
T ss_pred HHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC
Confidence 4555556666665565323344456766555444332 46899988543
No 310
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=27.33 E-value=47 Score=24.96 Aligned_cols=25 Identities=4% Similarity=0.139 Sum_probs=21.7
Q ss_pred hHHHHHHHhhcCCcEEEEEecCCCc
Q 032042 109 REKICEAIDKIPLSCLVIGNRGLGK 133 (148)
Q Consensus 109 ~~~I~~~a~~~~~dliV~g~~~~~~ 133 (148)
.+.+.+.|++.++.|||.|......
T Consensus 192 yd~~~~~A~~~kPklIi~G~SaY~r 216 (490)
T 3ou5_A 192 YNQLALTARLFRPRLIIAGTSAYAR 216 (490)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCS
T ss_pred HHHHHHHHhhcCCCeEEECCccCcc
Confidence 6889999999999999999887654
No 311
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=27.28 E-value=1.5e+02 Score=20.08 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=33.0
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEe
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~ 128 (148)
...+..+.+.+++.|+.++.-+ +|...-++.|.+.++|.|=+-+
T Consensus 113 ~~~l~~~i~~L~~~GIrVSLFI---Dpd~~qi~aA~~~GA~~IELhT 156 (243)
T 1m5w_A 113 RDKMRDACKRLADAGIQVSLFI---DADEEQIKAAAEVGAPFIEIHT 156 (243)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE---CSCHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHhCcCEEEEec
Confidence 3556667777888899877644 5766777999999999987744
No 312
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=27.25 E-value=99 Score=19.52 Aligned_cols=39 Identities=5% Similarity=0.231 Sum_probs=27.8
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEE
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~ 126 (148)
.+.++..++..|+++++... +...+++..+..++|+++.
T Consensus 38 ~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~ 76 (242)
T 3del_B 38 IDLAREISNKLGKTLDVREF---SFDALILNLKQHRIDAVIT 76 (242)
T ss_dssp HHHHHHHHHHHTCEEEEEEC---CGGGHHHHHHTTSSSEECS
T ss_pred HHHHHHHHHHcCCceEEEEc---CHHHHHHHHhCCCcCEEEe
Confidence 34455556666888877653 5777888888899999863
No 313
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=27.22 E-value=1.5e+02 Score=20.08 Aligned_cols=46 Identities=11% Similarity=-0.010 Sum_probs=27.5
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCC
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL 131 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~ 131 (148)
.....+...+...|+.+... ..+..+++ +.+++..+|+|++--.-+
T Consensus 171 ~~~~~l~~~L~~~g~~v~~~--a~~g~eAl-~~~~~~~~dlvl~D~~MP 216 (286)
T 3n0r_A 171 VIAADIEALVRELGHDVTDI--AATRGEAL-EAVTRRTPGLVLADIQLA 216 (286)
T ss_dssp HHHHHHHHHHHHTTCEEEEE--ESSHHHHH-HHHHHCCCSEEEEESCCT
T ss_pred HHHHHHHHHhhccCceEEEE--eCCHHHHH-HHHHhCCCCEEEEcCCCC
Confidence 34455666666667765422 23444444 556677899999965533
No 314
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=27.20 E-value=81 Score=17.13 Aligned_cols=15 Identities=0% Similarity=-0.086 Sum_probs=7.8
Q ss_pred HHHhhcCCcEEEEEe
Q 032042 114 EAIDKIPLSCLVIGN 128 (148)
Q Consensus 114 ~~a~~~~~dliV~g~ 128 (148)
+..+...+|++++..
T Consensus 39 ~~~~~~~~dlvl~D~ 53 (116)
T 3a10_A 39 KKFFSGNYDLVILDI 53 (116)
T ss_dssp HHHHHSCCSEEEECS
T ss_pred HHHhcCCCCEEEEEC
Confidence 344445566666643
No 315
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=27.18 E-value=1.8e+02 Score=21.08 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=30.7
Q ss_pred hhhHHHHHHHhhhcCceEEEE-Eee--CChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 82 PETLDIVNTVARQKQIVVVMK-IFW--GDPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-~~~--g~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
+++.+.+.+.+.+.|+++... +.. ......|+..+.+ +|-||+|+...+
T Consensus 280 e~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~--~~~ivlGspT~~ 331 (410)
T 4dik_A 280 ENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPD--SEALIFGVSTYE 331 (410)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTT--CSEEEEEECCTT
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHh--CCeEEEEeCCcC
Confidence 455666777777778875543 332 2223445554444 899999998865
No 316
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=26.96 E-value=61 Score=18.43 Aligned_cols=43 Identities=7% Similarity=-0.187 Sum_probs=23.4
Q ss_pred hhHHHHHHHhhhcC-ceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 83 ETLDIVNTVARQKQ-IVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
...+.+...+...| +.+. . ..+..++ ++..++..+|+|++...
T Consensus 25 ~~~~~l~~~L~~~g~~~v~--~-~~~~~~a-~~~l~~~~~dlvi~D~~ 68 (135)
T 3snk_A 25 NFKRDVATRLDALAIYDVR--V-SETDDFL-KGPPADTRPGIVILDLG 68 (135)
T ss_dssp HHHHHHHHHHHHTSSEEEE--E-ECGGGGG-GCCCTTCCCSEEEEEEE
T ss_pred HHHHHHHHHHhhcCCeEEE--E-eccHHHH-HHHHhccCCCEEEEeCC
Confidence 44455666666666 5443 2 1232332 34446677888888654
No 317
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=26.95 E-value=1.3e+02 Score=19.27 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=24.1
Q ss_pred hcCceEEEEEeeC-ChhHHHHHHHhhcCCcEEEEEec
Q 032042 94 QKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 94 ~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
-.++++....... +..+.+++.+++.++++||=|..
T Consensus 115 ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~ 151 (196)
T 2q5c_A 115 MLGVKIKEFLFSSEDEITTLISKVKTENIKIVVSGKT 151 (196)
T ss_dssp HHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEECHH
T ss_pred HhCCceEEEEeCCHHHHHHHHHHHHHCCCeEEECCHH
Confidence 3466666666543 45677778888888888776543
No 318
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=26.74 E-value=1.2e+02 Score=20.33 Aligned_cols=39 Identities=8% Similarity=-0.044 Sum_probs=23.1
Q ss_pred CCCccEEEEEecCCHhH------------HHHHHHHHhhcccCCCEEEEEEEe
Q 032042 1 MDGTRRVGVAVDFSACS------------KKALQWAADNVVRNGDHLILVTVV 41 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s------------~~al~~a~~la~~~~~~v~ll~v~ 41 (148)
|+..++|+|-+.++--. ...++....+. .+.++.++|--
T Consensus 21 ~~~~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~--~g~~vVlVhGg 71 (256)
T 2va1_A 21 MMRKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKIS--KKYIVSIVLGG 71 (256)
T ss_dssp --CCSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHT--TTSEEEEEECC
T ss_pred hhhcCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEECC
Confidence 55678999999875322 22333333332 57889999954
No 319
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=26.72 E-value=2.1e+02 Score=21.64 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHhhcccC-CCEEEEEEEec
Q 032042 15 ACSKKALQWAADNVVRN-GDHLILVTVVP 42 (148)
Q Consensus 15 ~~s~~al~~a~~la~~~-~~~v~ll~v~~ 42 (148)
..+++.+++|.++|++. ..+|+++|=..
T Consensus 165 ~~ieRIar~AFe~A~~r~rkkVT~V~KaN 193 (496)
T 2d1c_A 165 KGSEKIVRFAFELARAEGRKKVHCATKSN 193 (496)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCC
Confidence 47789999999999887 57788887654
No 320
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=26.63 E-value=1.2e+02 Score=18.84 Aligned_cols=39 Identities=13% Similarity=-0.022 Sum_probs=27.5
Q ss_pred HHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 87 IVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
.++..++..|+++++... .+...+++..+..++|+++.+
T Consensus 34 l~~~i~~~~g~~~~~~~~--~~~~~~~~~l~~g~~D~~~~~ 72 (233)
T 1ii5_A 34 VWRAVAESQKWNSEYVRQ--NSISAGITAVAEGELDILIGP 72 (233)
T ss_dssp HHHHHHHHHTCCEEEEEC--SCHHHHHHHHHTTSCSEEEEE
T ss_pred HHHHHHHHcCCcEEEEEe--CCHHHHHHHHHCCCcCEEEee
Confidence 344445556888776543 367788888899999998754
No 321
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=26.61 E-value=42 Score=21.16 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=20.6
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEE
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTV 40 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v 40 (148)
+.|++-+|+.+.....+..++..++..+.+++.+.+
T Consensus 110 ~~ivllTDG~~~~~~~~~~~~~~~~~~gi~i~~igv 145 (200)
T 1v7p_C 110 KVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAV 145 (200)
T ss_dssp EEEEEEESSCCSCGGGHHHHHHHHHHTTEEEEEEEE
T ss_pred eEEEEEccCCCCCcccHHHHHHHHHHCCCEEEEEEe
Confidence 446677787654433333444445556766666666
No 322
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=26.60 E-value=91 Score=17.47 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=14.9
Q ss_pred CCCccEEEEEecCCHhHHHHHHHHHh
Q 032042 1 MDGTRRVGVAVDFSACSKKALQWAAD 26 (148)
Q Consensus 1 m~~~~~ILv~~d~s~~s~~al~~a~~ 26 (148)
|++..+||| +|.++.....+...+.
T Consensus 1 M~~~~~ili-vdd~~~~~~~l~~~l~ 25 (133)
T 3nhm_A 1 MSLKPKVLI-VENSWTMRETLRLLLS 25 (133)
T ss_dssp ----CEEEE-ECSCHHHHHHHHHHHT
T ss_pred CCCCCEEEE-EcCCHHHHHHHHHHHh
Confidence 666778888 6667777777766655
No 323
>3tpa_A Heme-binding protein A; glutathione binding protein, SBP; 2.00A {Haemophilus parasuis 29755} SCOP: c.94.1.0
Probab=26.53 E-value=1.6e+02 Score=21.78 Aligned_cols=46 Identities=7% Similarity=-0.035 Sum_probs=32.5
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+..+.+++.+++.|++++..... ...........+.|+.++|..+
T Consensus 369 ~~~a~~iq~~l~~iGI~v~i~~~~---~~~~~~~~~~g~~d~~~~~w~~ 414 (521)
T 3tpa_A 369 RRTAEIIQADWAKIGVKAKLVTHE---WADFNKRTREGEFAAGTYGWTS 414 (521)
T ss_dssp HHHHHHHHHHHHHTTEEEEEECCC---HHHHHHHHHTTCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCceEEEEecc---hHHHHHHHhcCCcceEEEeccC
Confidence 345667788888889888876542 4455555667789999988765
No 324
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=26.46 E-value=82 Score=20.95 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=30.1
Q ss_pred HHHHHHHhhhcCceEEEEEee--------CChhHHHHHHHhhcCCcEEEE
Q 032042 85 LDIVNTVARQKQIVVVMKIFW--------GDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~--------g~~~~~I~~~a~~~~~dliV~ 126 (148)
.+-+...++..|++++..... ..+...++......++|+++-
T Consensus 62 ~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g~~D~~~~ 111 (284)
T 2a5s_A 62 IDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVG 111 (284)
T ss_dssp HHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECS
T ss_pred HHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcCCcCEEEE
Confidence 344555566678888887642 235788889999999999863
No 325
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=26.42 E-value=1.4e+02 Score=19.76 Aligned_cols=49 Identities=8% Similarity=-0.112 Sum_probs=28.5
Q ss_pred hhHHHHHHHhhhcCceEEEEEee--CChh--HHHHHHHhhcCCcEEEEEecCC
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFW--GDPR--EKICEAIDKIPLSCLVIGNRGL 131 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~--g~~~--~~I~~~a~~~~~dliV~g~~~~ 131 (148)
...+.+.+.+++.|+.+...... +++. ...++.+...++|-||+.....
T Consensus 20 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~ 72 (297)
T 3rot_A 20 SLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSD 72 (297)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCS
T ss_pred HHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCH
Confidence 45556666676777776654433 2443 2445555566788877755443
No 326
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=26.23 E-value=84 Score=20.29 Aligned_cols=41 Identities=10% Similarity=0.073 Sum_probs=29.5
Q ss_pred HHHHHHhhhcCceEEEEEee----C------ChhHHHHHHHhhcCCcEEEE
Q 032042 86 DIVNTVARQKQIVVVMKIFW----G------DPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~----g------~~~~~I~~~a~~~~~dliV~ 126 (148)
+-++..++..|+++++.... | .+...++...+..++|+++-
T Consensus 38 dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~ 88 (263)
T 1mqi_A 38 DLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIA 88 (263)
T ss_dssp HHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTSCSEECS
T ss_pred HHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHHcCCcCEEEE
Confidence 44555566678888877652 1 16888889999999999863
No 327
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=26.09 E-value=1.4e+02 Score=19.57 Aligned_cols=48 Identities=4% Similarity=0.043 Sum_probs=30.1
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChh--HHHHHHHhhcCCcEEEEEecC
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliV~g~~~ 130 (148)
...+.+.+.+.+.|+.+......+++. ...++.....++|-||+....
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 74 (293)
T 3l6u_A 25 RLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLD 74 (293)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 556667777777788766655444443 244555556778887775543
No 328
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=26.05 E-value=56 Score=20.80 Aligned_cols=36 Identities=6% Similarity=0.071 Sum_probs=21.1
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEE
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTV 40 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v 40 (148)
+.|++-+|+.+.....+..++..++..+..++.+.+
T Consensus 111 ~~iillTDG~~~~~~~~~~~~~~~~~~gi~i~~igi 146 (213)
T 1pt6_A 111 KVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAI 146 (213)
T ss_dssp EEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred eEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEe
Confidence 457777787654433344444555566766666655
No 329
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=25.97 E-value=89 Score=17.18 Aligned_cols=41 Identities=5% Similarity=0.115 Sum_probs=20.9
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
.+.+...+...|+.+. . ..+. ....+..+...+|++++...
T Consensus 16 ~~~l~~~l~~~~~~v~--~-~~~~-~~a~~~~~~~~~dlvi~D~~ 56 (123)
T 1xhf_A 16 RNTLKSIFEAEGYDVF--E-ATDG-AEMHQILSEYDINLVIMDIN 56 (123)
T ss_dssp HHHHHHHHHTTTCEEE--E-ESSH-HHHHHHHHHSCCSEEEECSS
T ss_pred HHHHHHHHhhCCcEEE--E-eCCH-HHHHHHHhcCCCCEEEEcCC
Confidence 3344454544555432 1 2233 33345555667888887654
No 330
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=25.88 E-value=56 Score=21.77 Aligned_cols=80 Identities=13% Similarity=0.073 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHHhhhc
Q 032042 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (148)
Q Consensus 16 ~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (148)
.....++.++++|...|++...+|.-.... ....+ +.+ +...+.+..+.+.+++.
T Consensus 81 ~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~-------------------~~~~~-~~~-----~~~~~~l~~l~~~a~~~ 135 (286)
T 3dx5_A 81 KTIEKCEQLAILANWFKTNKIRTFAGQKGS-------------------ADFSQ-QER-----QEYVNRIRMICELFAQH 135 (286)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEECSCSSCG-------------------GGSCH-HHH-----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCCCCc-------------------ccCcH-HHH-----HHHHHHHHHHHHHHHHh
Confidence 345677788888888888777665322110 00000 011 12245566677777777
Q ss_pred CceEEEEEeeC---ChhHHHHHHHhhcC
Q 032042 96 QIVVVMKIFWG---DPREKICEAIDKIP 120 (148)
Q Consensus 96 ~~~~~~~~~~g---~~~~~I~~~a~~~~ 120 (148)
|+.+-.+-..+ ...+.+.+.++..+
T Consensus 136 Gv~l~lE~~~~~~~~~~~~~~~l~~~~~ 163 (286)
T 3dx5_A 136 NMYVLLETHPNTLTDTLPSTLELLGEVD 163 (286)
T ss_dssp TCEEEEECCTTSTTSSHHHHHHHHHHHC
T ss_pred CCEEEEecCCCcCcCCHHHHHHHHHhcC
Confidence 88765554332 22345556655544
No 331
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=25.87 E-value=2e+02 Score=21.09 Aligned_cols=38 Identities=5% Similarity=-0.065 Sum_probs=20.1
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEe
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~ 41 (148)
.++|-+..+.++.....++.....+.+.|..|.....+
T Consensus 185 w~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i 222 (479)
T 3sm9_A 185 WTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKV 222 (479)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred CeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEc
Confidence 34555555555555555555555555555555444333
No 332
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=25.79 E-value=1.3e+02 Score=19.09 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=14.5
Q ss_pred HHHHHHhhcCCcEEEEEecCCC
Q 032042 111 KICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 111 ~I~~~a~~~~~dliV~g~~~~~ 132 (148)
.+.+...+ +|.||+++.-..
T Consensus 80 ~~~~~l~~--AD~iV~~~P~y~ 99 (212)
T 3r6w_A 80 QLVGELFD--SDLLVISTPMYN 99 (212)
T ss_dssp HHHHHHHH--CSEEEEEEECBT
T ss_pred HHHHHHHh--CCEEEEEcCccc
Confidence 44555565 999999988654
No 333
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=25.76 E-value=91 Score=17.21 Aligned_cols=40 Identities=8% Similarity=0.051 Sum_probs=19.3
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
+.+...+...|+.+. . ..+. ...++..+...+|++++...
T Consensus 17 ~~l~~~l~~~~~~v~--~-~~~~-~~a~~~~~~~~~dlvl~D~~ 56 (124)
T 1srr_A 17 ILLNEVFNKEGYQTF--Q-AANG-LQALDIVTKERPDLVLLDMK 56 (124)
T ss_dssp HHHHHHHHTTTCEEE--E-ESSH-HHHHHHHHHHCCSEEEEESC
T ss_pred HHHHHHHHHCCcEEE--E-eCCH-HHHHHHHhccCCCEEEEecC
Confidence 344444444455432 1 2233 33334445566777777644
No 334
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=25.68 E-value=1.4e+02 Score=19.32 Aligned_cols=44 Identities=7% Similarity=-0.019 Sum_probs=25.9
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEe
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~ 128 (148)
...+.+.+.++..|++++..-......+.+.+..++ +|.|+++.
T Consensus 44 ~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~--ad~I~l~G 87 (206)
T 3l4e_A 44 FYVEAGKKALESLGLLVEELDIATESLGEITTKLRK--NDFIYVTG 87 (206)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH--SSEEEECC
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh--CCEEEECC
Confidence 456667777777788655421112223444455555 89999865
No 335
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.67 E-value=1e+02 Score=17.63 Aligned_cols=14 Identities=7% Similarity=0.278 Sum_probs=6.8
Q ss_pred HHHhhcCCcEEEEE
Q 032042 114 EAIDKIPLSCLVIG 127 (148)
Q Consensus 114 ~~a~~~~~dliV~g 127 (148)
+..+...+|+|++.
T Consensus 42 ~~l~~~~~dlvllD 55 (137)
T 3cfy_A 42 QFIERSKPQLIILD 55 (137)
T ss_dssp HHHHHHCCSEEEEC
T ss_pred HHHHhcCCCEEEEe
Confidence 33344455555554
No 336
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=25.46 E-value=1.7e+02 Score=20.27 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=8.1
Q ss_pred hHHHHHHHhhcCCcEEEEE
Q 032042 109 REKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 109 ~~~I~~~a~~~~~dliV~g 127 (148)
...+++.+++.+.+.-++|
T Consensus 211 a~~~~~~~~~~g~~~~~~~ 229 (392)
T 3lkb_A 211 VANILKDAKRLGLKMRHLG 229 (392)
T ss_dssp HHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHcCCCceEEE
Confidence 3344444444444444443
No 337
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=25.44 E-value=58 Score=22.84 Aligned_cols=41 Identities=17% Similarity=0.065 Sum_probs=27.5
Q ss_pred HHHHhhhcCceEEEEEeeCCh-hHHHHHHHhhcCCcEEEEEecCC
Q 032042 88 VNTVARQKQIVVVMKIFWGDP-REKICEAIDKIPLSCLVIGNRGL 131 (148)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~-~~~I~~~a~~~~~dliV~g~~~~ 131 (148)
+.+.+.+.|+++.. ..+. ..+.++..++.++|+||+...++
T Consensus 52 v~~~A~~~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~y~~ 93 (317)
T 3rfo_A 52 VKVEAEKHGIPVLQ---PLRIREKDEYEKVLALEPDLIVTAAFGQ 93 (317)
T ss_dssp HHHHHHHTTCCEEC---CSCTTSHHHHHHHHHHCCSEEEESSCCS
T ss_pred HHHHHHHcCCCEEc---cccCCCHHHHHHHHhcCCCEEEEcCchh
Confidence 66677778888542 1121 23556778889999999976653
No 338
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=25.43 E-value=75 Score=20.61 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=30.7
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhccc--CCCEEEEEEEecCC
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVR--NGDHLILVTVVPEG 44 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~--~~~~v~ll~v~~~~ 44 (148)
..+.++|.+..|..+...++.+ ..++. .|++++++.-.+..
T Consensus 105 ~~~DlvI~iS~SG~t~~~i~~~-~~ak~~~~Ga~vI~IT~~~~s 147 (220)
T 3etn_A 105 QENDLLLLISNSGKTREIVELT-QLAHNLNPGLKFIVITGNPDS 147 (220)
T ss_dssp CTTCEEEEECSSSCCHHHHHHH-HHHHHHCTTCEEEEEESCTTS
T ss_pred CCCCEEEEEcCCCCCHHHHHHH-HHHHhcCCCCeEEEEECCCCC
Confidence 3467899999988887766654 45777 89999988876544
No 339
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=25.42 E-value=1.2e+02 Score=20.35 Aligned_cols=34 Identities=9% Similarity=-0.033 Sum_probs=29.6
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEE
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLI 36 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ 36 (148)
.++-|++|++++-+.+....+...+.+.++.+|+
T Consensus 133 ~V~EVIlAtnpTvEGEaTA~YI~~~Lk~~~vkVT 166 (228)
T 1vdd_A 133 QGMEVILATGTTVEGDATALYLQRLLEPLGAAIS 166 (228)
T ss_dssp TTCEEEECCCSSHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CCCEEEEeCCCCchHHHHHHHHHHHHHHcCCCEE
Confidence 3678999999999999999999999988877664
No 340
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=25.34 E-value=1.5e+02 Score=19.60 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=29.0
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+.+..+.+.-....+-+-+.....+..+...+..+..++|+||.-..+
T Consensus 128 pdIL~~l~~~~~~~~~~VGFaaEt~~l~e~A~~kL~~k~~d~ivaN~~~ 176 (226)
T 1u7z_A 128 PDIVAGVAALKDHRPYVVGFAAETNNVEEYARQKRIRKNLDLICANDVS 176 (226)
T ss_dssp CCHHHHHHHCSSSCCEEEEEEEESSSHHHHHHHHHHHHTCSEEEEEECS
T ss_pred HHHHHHHHhhhcCCcEEEEcchhhchHHHHHHHHHHhcCCCEEEEeecc
Confidence 3444444442111123444444445666777777788999999997665
No 341
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=25.29 E-value=75 Score=21.00 Aligned_cols=79 Identities=5% Similarity=-0.068 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHHhhhc
Q 032042 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (148)
Q Consensus 16 ~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (148)
.....++.++++|...|++..++|.- .+. .....+.++ ...+.++.+.+.+++.
T Consensus 90 ~~~~~~~~~i~~A~~lGa~~v~~~~g-~~~--------------------~~~~~~~~~-----~~~~~l~~l~~~a~~~ 143 (269)
T 3ngf_A 90 EFRDNVDIALHYALALDCRTLHAMSG-ITE--------------------GLDRKACEE-----TFIENFRYAADKLAPH 143 (269)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEECCBC-BCT--------------------TSCHHHHHH-----HHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEccC-CCC--------------------CCCHHHHHH-----HHHHHHHHHHHHHHHc
Confidence 34567888999999999987776542 110 001111121 2345666777777777
Q ss_pred CceEEEEEee--------CChhHHHHHHHhhcC
Q 032042 96 QIVVVMKIFW--------GDPREKICEAIDKIP 120 (148)
Q Consensus 96 ~~~~~~~~~~--------g~~~~~I~~~a~~~~ 120 (148)
|+.+-.+... ....+.+.+.++..+
T Consensus 144 Gv~l~lE~~n~~~~~~~~~~~~~~~~~l~~~v~ 176 (269)
T 3ngf_A 144 GITVLVEPLNTRNMPGYFIVHQLEAVGLVKRVN 176 (269)
T ss_dssp TCEEEECCCCTTTSTTBSCCCHHHHHHHHHHHC
T ss_pred CCEEEEeeCCcccCccchhcCHHHHHHHHHHhC
Confidence 8876665321 122445556666544
No 342
>3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type transport system, PERI component, transport protein; HET: GDS; 1.85A {Haemophilus parasuis}
Probab=25.13 E-value=1.8e+02 Score=21.56 Aligned_cols=46 Identities=9% Similarity=0.044 Sum_probs=32.4
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
++..+.+++.+++.|++++.... ......+.....+.|+.++|..+
T Consensus 364 ~~~a~~iq~~l~~iGI~v~i~~~---~~~~~~~~~~~g~~d~~~~~w~~ 409 (522)
T 3m8u_A 364 RRMAELVQSDWEKVGVKSKLVSY---EWGDYIKRTKAGELTAGTYGWSG 409 (522)
T ss_dssp HHHHHHHHHHHHTTTEEEEEECC---CHHHHHHHHHTTCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCceEEEEee---cHHHHHHHHhcCCccEEEEeccC
Confidence 34566777888888888887654 24445555667789999988765
No 343
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=25.10 E-value=62 Score=20.77 Aligned_cols=37 Identities=5% Similarity=0.068 Sum_probs=21.7
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEe
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~ 41 (148)
+.|++-+|+.+.....+..++..++..+.+++.+.+-
T Consensus 126 ~~iillTDG~~~~~~~~~~~~~~~~~~gi~v~~igvG 162 (223)
T 2b2x_A 126 KVMVIVTDGESHDNYRLKQVIQDCEDENIQRFSIAIL 162 (223)
T ss_dssp EEEEEEESSCCTTGGGHHHHHHHHHTTTEEEEEEEEC
T ss_pred eEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEec
Confidence 4466777876544333444445556667777766663
No 344
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=25.03 E-value=1.2e+02 Score=19.18 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=24.1
Q ss_pred CCCccEEEEEecCC---HhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 1 MDGTRRVGVAVDFS---ACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 1 m~~~~~ILv~~d~s---~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
|| ++||+-.... ..+...++++...+. .+.++.++...+
T Consensus 1 MM--~kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~ 42 (192)
T 3fvw_A 1 MS--KRILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDR 42 (192)
T ss_dssp ----CEEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSS
T ss_pred CC--CEEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCcc
Confidence 56 6787755432 255677888877665 577777766543
No 345
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=25.00 E-value=92 Score=17.02 Aligned_cols=16 Identities=6% Similarity=0.104 Sum_probs=9.4
Q ss_pred HHHhhcCCcEEEEEec
Q 032042 114 EAIDKIPLSCLVIGNR 129 (148)
Q Consensus 114 ~~a~~~~~dliV~g~~ 129 (148)
+..++..+|+|++...
T Consensus 41 ~~~~~~~~dlil~D~~ 56 (120)
T 1tmy_A 41 EKYKELKPDIVTMDIT 56 (120)
T ss_dssp HHHHHHCCSEEEEECS
T ss_pred HHHHhcCCCEEEEeCC
Confidence 4445556777777543
No 346
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} SCOP: d.374.1.1
Probab=24.92 E-value=62 Score=17.51 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=14.8
Q ss_pred ccEEEEEecCCHhHHHHHHHHHh
Q 032042 4 TRRVGVAVDFSACSKKALQWAAD 26 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~ 26 (148)
|+-+.++.|..+-...|+.||.+
T Consensus 32 y~LV~L~~dePEvaa~AL~~A~e 54 (90)
T 2dbs_A 32 YRLVLLPLDEPEVAAQALAWAME 54 (90)
T ss_dssp CEEEEEETTCHHHHHHHHHHHHS
T ss_pred eEEEecCCCCHHHHHHHHHHHHh
Confidence 44444555555567788888887
No 347
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=24.89 E-value=1.2e+02 Score=19.25 Aligned_cols=47 Identities=11% Similarity=0.163 Sum_probs=28.2
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh--cCCcEEEEEe
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVIGN 128 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliV~g~ 128 (148)
...++.+++.+...++.-.+.+..++..+.+...... ..+|+|++..
T Consensus 93 ~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~ 141 (223)
T 3duw_A 93 EKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDA 141 (223)
T ss_dssp HHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECS
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcC
Confidence 4556666666666666423444557766655544432 4589999854
No 348
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=24.85 E-value=1e+02 Score=17.53 Aligned_cols=17 Identities=6% Similarity=0.212 Sum_probs=9.6
Q ss_pred HHHHhhcCCcEEEEEec
Q 032042 113 CEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 113 ~~~a~~~~~dliV~g~~ 129 (148)
++.+++..+|+|++...
T Consensus 47 l~~l~~~~~dlvllD~~ 63 (140)
T 3c97_A 47 LQAYQNRQFDVIIMDIQ 63 (140)
T ss_dssp HHHHHHSCCSEEEECTT
T ss_pred HHHHhcCCCCEEEEeCC
Confidence 34445556777776543
No 349
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=24.78 E-value=2.1e+02 Score=21.01 Aligned_cols=28 Identities=11% Similarity=0.025 Sum_probs=20.1
Q ss_pred EeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 103 IFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 103 ~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+..+.-...+.+.+++.++|+++-++++
T Consensus 368 v~~~~d~~~l~~~i~~~~pDl~ig~~~~ 395 (458)
T 1mio_B 368 VKVEGDFFDVHQWIKNEGVDLLISNTYG 395 (458)
T ss_dssp EEESCBHHHHHHHHHHSCCSEEEESGGG
T ss_pred EEECCCHHHHHHHHHhcCCCEEEeCcch
Confidence 4445345668888888999999976654
No 350
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=24.74 E-value=32 Score=23.04 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=15.9
Q ss_pred hhcCCcEEEEEecCCCccce
Q 032042 117 DKIPLSCLVIGNRGLGKLKR 136 (148)
Q Consensus 117 ~~~~~dliV~g~~~~~~~~~ 136 (148)
++.++|.||+|+.+...+.+
T Consensus 171 ~~~gad~IVLGCTh~p~l~~ 190 (245)
T 3qvl_A 171 KEDGSGAIVLGSGGMATLAQ 190 (245)
T ss_dssp HHSCCSEEEECCGGGGGGHH
T ss_pred HhcCCCEEEECCCChHHHHH
Confidence 45789999999998776544
No 351
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=24.69 E-value=82 Score=21.74 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=21.9
Q ss_pred CCCccEEEEEecCC-----HhHHHHHHHHHhhcccCCCEEEEEEEecC
Q 032042 1 MDGTRRVGVAVDFS-----ACSKKALQWAADNVVRNGDHLILVTVVPE 43 (148)
Q Consensus 1 m~~~~~ILv~~d~s-----~~s~~al~~a~~la~~~~~~v~ll~v~~~ 43 (148)
||+.+|||+.++.. .....+...+..+ .+.+|+++.....
T Consensus 1 M~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L---~g~~v~v~~~~~~ 45 (394)
T 3okp_A 1 MSASRKTLVVTNDFPPRIGGIQSYLRDFIATQ---DPESIVVFASTQN 45 (394)
T ss_dssp ---CCCEEEEESCCTTSCSHHHHHHHHHHTTS---CGGGEEEEEECSS
T ss_pred CCCCceEEEEeCccCCccchHHHHHHHHHHHh---cCCeEEEEECCCC
Confidence 78888999988722 2233444444444 3667887776543
No 352
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=24.63 E-value=1.6e+02 Score=19.64 Aligned_cols=36 Identities=6% Similarity=-0.034 Sum_probs=26.9
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEe
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~ 41 (148)
+.++++|++.+.-+|.-++..+... .+.++..+|+.
T Consensus 25 g~~~vvv~lSGGiDSsv~a~l~~~~---~g~~v~av~~~ 60 (249)
T 3p52_A 25 QSQGVVLGLSGGIDSALVATLCKRA---LKENVFALLMP 60 (249)
T ss_dssp SCSEEEEECCSSHHHHHHHHHHHHH---HTTSEEEEECC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHH---cCCcEEEEEec
Confidence 4689999999988888777776653 24677777764
No 353
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=24.61 E-value=60 Score=18.53 Aligned_cols=11 Identities=9% Similarity=-0.121 Sum_probs=4.7
Q ss_pred hhcCCcEEEEE
Q 032042 117 DKIPLSCLVIG 127 (148)
Q Consensus 117 ~~~~~dliV~g 127 (148)
++..+|+|++.
T Consensus 47 ~~~~~dlvi~D 57 (136)
T 3kto_A 47 ISDDAIGMIIE 57 (136)
T ss_dssp CCTTEEEEEEE
T ss_pred hccCCCEEEEe
Confidence 33344444443
No 354
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=24.51 E-value=71 Score=17.67 Aligned_cols=26 Identities=23% Similarity=0.092 Sum_probs=17.6
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCC
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNG 32 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~ 32 (148)
+.++|+.|.+.. +-.+......++++
T Consensus 4 M~~lV~YDI~~~--kr~~kv~k~l~~yg 29 (90)
T 1zpw_X 4 RLYAVAYDIPDD--TRRVKLANLLKSYG 29 (90)
T ss_dssp EEEEEEEECCCH--HHHHHHHHHHHTTE
T ss_pred eEEEEEEeCCCh--HHHHHHHHHHHHhC
Confidence 569999998753 44555556666665
No 355
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=24.30 E-value=1.3e+02 Score=21.96 Aligned_cols=44 Identities=11% Similarity=-0.036 Sum_probs=25.9
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh--cCCcEEEE
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVI 126 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliV~ 126 (148)
.....+...+++.|.++.......|-.+.|.+..++ .++|+||+
T Consensus 204 sn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~Dlvit 249 (411)
T 1g8l_A 204 TNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVIS 249 (411)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEE
T ss_pred CchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEE
Confidence 444557777788898866554444444444333222 15899887
No 356
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=24.26 E-value=1.5e+02 Score=19.33 Aligned_cols=22 Identities=5% Similarity=-0.038 Sum_probs=13.4
Q ss_pred hhhHHHHHHHhhhcCceEEEEE
Q 032042 82 PETLDIVNTVARQKQIVVVMKI 103 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ 103 (148)
..+.+.+.+.+++.|.+++..-
T Consensus 18 ~~l~~~~~~~l~~~g~ev~~~d 39 (228)
T 3tem_A 18 GSLKNVAVDELSRQGCTVTVSD 39 (228)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
Confidence 3555666666666677766653
No 357
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=24.17 E-value=1.4e+02 Score=20.45 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=28.2
Q ss_pred HHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEe
Q 032042 87 IVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (148)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~ 128 (148)
.+....++.|++++... ......+++.....++|++++|.
T Consensus 26 l~~~l~k~lG~~ve~~~--~~~~~~~i~al~~G~vDi~~~~~ 65 (310)
T 3n5l_A 26 FLKDMSQQTGYQVKAFF--APDYAGIIQGMRFDKVDIAWYGN 65 (310)
T ss_dssp HHHHHHHHHSSEEEEEC--CSSHHHHHHHHHTTSCSEEECCH
T ss_pred HHHHHHHHhCCCEEEEe--CCCHHHHHHHHHcCCCCEEEECc
Confidence 34444456688877653 34567788888889999999874
No 358
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=24.12 E-value=1e+02 Score=17.31 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=19.6
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
+.+...+...|+.+. . ..+.. ..++..+...+|+|++...
T Consensus 17 ~~l~~~L~~~g~~v~--~-~~~~~-~al~~~~~~~~dlvl~D~~ 56 (132)
T 3crn_A 17 DSTKQILEFEGYEVE--I-AATAG-EGLAKIENEFFNLALFXIK 56 (132)
T ss_dssp HHHHHHHHHTTCEEE--E-ESSHH-HHHHHHHHSCCSEEEECSB
T ss_pred HHHHHHHHHCCceEE--E-eCCHH-HHHHHHhcCCCCEEEEecC
Confidence 334444444555432 1 22333 3334555566777777544
No 359
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=24.07 E-value=98 Score=16.99 Aligned_cols=41 Identities=0% Similarity=-0.023 Sum_probs=20.3
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
.+.+...+...|+.+. . ..+.. ...+..++..+|++++...
T Consensus 14 ~~~l~~~L~~~~~~v~--~-~~~~~-~a~~~~~~~~~dlvi~D~~ 54 (124)
T 1mb3_A 14 MKLFHDLLEAQGYETL--Q-TREGL-SALSIARENKPDLILMDIQ 54 (124)
T ss_dssp HHHHHHHHHHTTCEEE--E-ESCHH-HHHHHHHHHCCSEEEEESB
T ss_pred HHHHHHHHHHcCcEEE--E-eCCHH-HHHHHHhcCCCCEEEEeCC
Confidence 3344444544555432 1 22333 3334555566788777654
No 360
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=24.02 E-value=1.1e+02 Score=17.56 Aligned_cols=42 Identities=7% Similarity=0.011 Sum_probs=25.7
Q ss_pred HHHHHHHhhhcCceEEEEEee-CChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 85 LDIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
...+++.+.+.|+++++.... .+... .. .++|+|+.+..-..
T Consensus 39 ~~kl~~~~~~~gi~~~V~~~~~~~~~~----~~--~~~DlIist~~l~~ 81 (113)
T 1tvm_A 39 AEEIKELCQSHNIPVELIQCRVNEIET----YM--DGVHLICTTARVDR 81 (113)
T ss_dssp HHHHHHHHHHTTCCEEEEEECTTTTTT----ST--TSCSEEEESSCCCC
T ss_pred HHHHHHHHHHcCCeEEEEEecHHHHhh----cc--CCCCEEEECCcccc
Confidence 456777787888876555432 22211 22 35999999876543
No 361
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=23.83 E-value=86 Score=20.49 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=29.5
Q ss_pred CChhhHHHHHHHhhhcCceEEEEE-eeCChhHHHHHHHhhcCCcEEEEE
Q 032042 80 PDPETLDIVNTVARQKQIVVVMKI-FWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
..++.++.+.+++++.|++--+.. ..|..+....+.. .+..+|+++
T Consensus 27 NT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVT 73 (201)
T 1vp8_A 27 NTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVT 73 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEE
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEe
Confidence 456788888888888887722222 2355565556655 347888885
No 362
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=23.71 E-value=1.1e+02 Score=17.41 Aligned_cols=41 Identities=10% Similarity=-0.036 Sum_probs=20.4
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
.+.+...+...|+.+. . ..+..+ .++.++...+|+|++...
T Consensus 17 ~~~l~~~L~~~g~~v~--~-~~~~~~-al~~~~~~~~dlvllD~~ 57 (136)
T 2qzj_A 17 CQKLKGFLEEKGISID--L-AYNCEE-AIGKIFSNKYDLIFLEII 57 (136)
T ss_dssp HHHHHHHHHTTTCEEE--E-ESSHHH-HHHHHHHCCCSEEEEESE
T ss_pred HHHHHHHHHHCCCEEE--E-ECCHHH-HHHHHHhcCCCEEEEeCC
Confidence 3344454544455432 1 233333 335555567788877544
No 363
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=23.61 E-value=1.2e+02 Score=17.66 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=22.6
Q ss_pred hHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..+.+...+...|+.+. . ..+ ....++..++..+|+|++...-
T Consensus 19 ~~~~l~~~L~~~g~~v~--~-~~~-~~~a~~~l~~~~~dlvi~d~~l 61 (154)
T 2rjn_A 19 ILNSLKRLIKRLGCNII--T-FTS-PLDALEALKGTSVQLVISDMRM 61 (154)
T ss_dssp HHHHHHHHHHTTTCEEE--E-ESC-HHHHHHHHTTSCCSEEEEESSC
T ss_pred HHHHHHHHHHHcCCeEE--E-eCC-HHHHHHHHhcCCCCEEEEecCC
Confidence 33445555555565433 1 223 3344455566678888876543
No 364
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=23.60 E-value=54 Score=20.79 Aligned_cols=39 Identities=18% Similarity=0.045 Sum_probs=25.6
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecC
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~ 43 (148)
.+.|++-+|+.+... .+..++..++..+.+|+.+.+-.+
T Consensus 112 ~~~ivllTDG~~~~~-~~~~~~~~~~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 112 GRAIIVITDGENHEG-GAVEAAKAAAEKGIQVSVLGVGMP 150 (218)
T ss_dssp CEEEEEEECCTTCCS-CHHHHHHHHHTTTEEEEEEEESCT
T ss_pred CcEEEEEcCCCCCCC-cHHHHHHHHHhcCCEEEEEEecCC
Confidence 367788888866443 234445556677888888887654
No 365
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=23.59 E-value=82 Score=22.80 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=22.2
Q ss_pred HhHHHHHHHHHhhcccCCCEEEEEEEe
Q 032042 15 ACSKKALQWAADNVVRNGDHLILVTVV 41 (148)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~v~ll~v~ 41 (148)
..+++.+++|.++|++...+|+++|--
T Consensus 179 ~~~eRIar~AFe~A~~rrkkVT~v~Ka 205 (375)
T 3vmk_A 179 KEIRRIAKIAFESAQGRRKKVTSVDKA 205 (375)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECc
Confidence 477899999999998888888887753
No 366
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=23.38 E-value=1.2e+02 Score=20.18 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=26.7
Q ss_pred HHHHHHHhhhcCceEEEEEee-C-------Ch--hHHHHHHHhhcCCcEEEEEe
Q 032042 85 LDIVNTVARQKQIVVVMKIFW-G-------DP--REKICEAIDKIPLSCLVIGN 128 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-g-------~~--~~~I~~~a~~~~~dliV~g~ 128 (148)
...+.+.++..|+++...+.. | ++ .+.+.+.+.+.++|.|.++.
T Consensus 134 ~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~ 187 (273)
T 2qjg_A 134 LGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSY 187 (273)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECC
Confidence 445566666678776554411 1 11 23344678889999988873
No 367
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=23.37 E-value=1.2e+02 Score=17.66 Aligned_cols=42 Identities=5% Similarity=-0.027 Sum_probs=22.2
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.+.+...+...|+.+.. ..+ .+..++..+...+|+|++...-
T Consensus 16 ~~~l~~~L~~~g~~v~~---~~~-~~~a~~~l~~~~~dliild~~l 57 (155)
T 1qkk_A 16 RKAMQQTLELAGFTVSS---FAS-ATEALAGLSADFAGIVISDIRM 57 (155)
T ss_dssp HHHHHHHHHHTTCEEEE---ESC-HHHHHHTCCTTCCSEEEEESCC
T ss_pred HHHHHHHHHHcCcEEEE---ECC-HHHHHHHHHhCCCCEEEEeCCC
Confidence 34445555555654331 223 3444455566678888876543
No 368
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=23.32 E-value=1.2e+02 Score=17.80 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=25.8
Q ss_pred EEEEEec-CCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 6 RVGVAVD-FSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 6 ~ILv~~d-~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
+|+|.+. .+.+++...+....-+...+.++.++.+.+
T Consensus 3 ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~ 40 (148)
T 3f6r_A 3 KVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAAD 40 (148)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhh
Confidence 5665554 355778888888777777777888776654
No 369
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=23.28 E-value=1e+02 Score=16.84 Aligned_cols=18 Identities=0% Similarity=-0.169 Sum_probs=10.5
Q ss_pred HHHHHhhcCCcEEEEEec
Q 032042 112 ICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 112 I~~~a~~~~~dliV~g~~ 129 (148)
..+..+...+|++++...
T Consensus 36 a~~~~~~~~~dlil~D~~ 53 (121)
T 2pl1_A 36 ADYYLNEHIPDIAIVDLG 53 (121)
T ss_dssp HHHHHHHSCCSEEEECSC
T ss_pred HHHHHhccCCCEEEEecC
Confidence 334455566777777543
No 370
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=23.13 E-value=1.7e+02 Score=19.47 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=56.0
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhh
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (148)
+...+++.| +.+.+++...+.-...+..|.++...+... ...+.
T Consensus 9 ~~~~~tlGF--d~~~~vral~~~g~~~~d~ViLv~~~~~~~----------------------------------~~~~A 52 (244)
T 2wte_A 9 KSYFVTMGF--NETFLLRLLNETSAQKEDSLVIVVPSPIVS----------------------------------GTRAA 52 (244)
T ss_dssp CEEEECCCS--CCHHHHHHHHHTTCCTTSEEEEEEESSCCH----------------------------------HHHHH
T ss_pred hhheeccCc--ChHHHHHHHHHhCCCCCCEEEEEeCCCcch----------------------------------hHHHH
Confidence 567777777 456777777887666778888877643210 12466
Q ss_pred HHHHHHHhhhcC-ceEEEEEeeC-ChhHH---HHHHHhhcCCcEEEEEecCCC
Q 032042 85 LDIVNTVARQKQ-IVVVMKIFWG-DPREK---ICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~g-~~~~~---I~~~a~~~~~dliV~g~~~~~ 132 (148)
.+.+++.+...| ++++..-... +..+. |.+...+...+++|--+.|+.
T Consensus 53 ~~~i~~~l~~~~~i~~e~~~vd~~df~~~v~~i~~~i~~~~~~iivnlsGG~R 105 (244)
T 2wte_A 53 IESLRAQISRLNYPPPRIYEIEITDFNLALSKILDIILTLPEPIISDLTMGMR 105 (244)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECCCSHHHHHHHHHHHHTTSCSSEEEECSSSCH
T ss_pred HHHHHHHHHHcCCCceEEEEECCccHHHHHHHHHHHHhhcCCcEEEEecCCch
Confidence 777777777665 4666655543 44333 445555543367774444443
No 371
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=23.11 E-value=1e+02 Score=16.96 Aligned_cols=15 Identities=0% Similarity=0.009 Sum_probs=7.6
Q ss_pred HHHhhcCCcEEEEEe
Q 032042 114 EAIDKIPLSCLVIGN 128 (148)
Q Consensus 114 ~~a~~~~~dliV~g~ 128 (148)
+..+...+|++++..
T Consensus 40 ~~~~~~~~dlvi~D~ 54 (127)
T 2jba_A 40 NQLNEPWPDLILLAW 54 (127)
T ss_dssp TTCSSSCCSEEEEES
T ss_pred HHHhccCCCEEEEec
Confidence 444444556666543
No 372
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=23.05 E-value=1.4e+02 Score=20.64 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=27.6
Q ss_pred HHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEe
Q 032042 88 VNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (148)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~ 128 (148)
+....++.|++++... ......+++.....++|++++|.
T Consensus 37 ~~~L~k~lG~~ve~~~--~~~~~~~i~aL~~G~vDia~~~~ 75 (321)
T 3p7i_A 37 LQDMEKKLGVKVNAFF--APDYAGIIQGMRFNKVDIAWYGN 75 (321)
T ss_dssp HHHHHHHHTSCEEEEC--CSSHHHHHHHHHTTSCSEEECCH
T ss_pred HHHHHHHHCCCEEEEe--cCCHHHHHHHHHcCCCcEEEECh
Confidence 4444455688877653 34567788888889999998874
No 373
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=23.03 E-value=1.7e+02 Score=19.27 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=32.2
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChh--HHHHHHHhhcCCcEEEEEecC
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliV~g~~~ 130 (148)
...+.+.+.+.+.|+.+......+++. ..+++.....++|-||+....
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 25 EVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 556677777888888876655444443 346666777789988875543
No 374
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*
Probab=23.00 E-value=1.3e+02 Score=21.39 Aligned_cols=47 Identities=11% Similarity=0.083 Sum_probs=32.0
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCc--EEEEEe
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLS--CLVIGN 128 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~d--liV~g~ 128 (148)
++.++...+..++.|+++.++...+......++..++.++| -+|+|-
T Consensus 192 ~k~frA~a~aa~etG~Pv~iHt~~~~~~~e~l~iL~eeG~~~~~vvi~H 240 (360)
T 3tn4_A 192 KMFFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGADPKKIVIGH 240 (360)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECSTTCCHHHHHHHHHHTTCCGGGEEECC
T ss_pred HHHHHHHHHHHHHhCCcEEEEcCcccCCHHHHHHHHHcCCCCCceEEEc
Confidence 46677777777788999999987765444444555566654 677753
No 375
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=23.00 E-value=1.3e+02 Score=19.17 Aligned_cols=38 Identities=5% Similarity=0.100 Sum_probs=26.1
Q ss_pred HHHHHHhhhc-CceEEEEEeeCChhHHHHHHHhhcCCcEEEE
Q 032042 86 DIVNTVARQK-QIVVVMKIFWGDPREKICEAIDKIPLSCLVI 126 (148)
Q Consensus 86 ~~~~~~~~~~-~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~ 126 (148)
+-++..+++. |+++++... +...++...+..++|+++-
T Consensus 37 dl~~~ia~~l~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~ 75 (243)
T 4gvo_A 37 ELVKEIDKRLPGYKFKFKTM---DFSNLLVSLGAGKVDIVAH 75 (243)
T ss_dssp HHHHHHHHTCTTEEEEEEEC---CGGGHHHHHHTTSCSEECS
T ss_pred HHHHHHHHhccCCeEEEEEC---CHHHHHHHHHCCCCCEecc
Confidence 3344555553 788777553 5677888888899998763
No 376
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=22.99 E-value=1.5e+02 Score=19.98 Aligned_cols=33 Identities=6% Similarity=0.000 Sum_probs=23.3
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
.+|+|++. ..+|...+..+..+ +.++.++|+..
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~----~~~i~vv~iDt 87 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKL----NRNVKVFSLDT 87 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHH----CTTCCEEEECC
T ss_pred CCEEEEee-cHHHHHHHHHHHHh----CCCceEEEEeC
Confidence 57889888 77888777777664 34466677643
No 377
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}
Probab=22.96 E-value=1.8e+02 Score=19.69 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=13.7
Q ss_pred ccEEEEEecCCHhHHHHHHHHHh
Q 032042 4 TRRVGVAVDFSACSKKALQWAAD 26 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~ 26 (148)
-.++.|++|..+ ...+++.+-.
T Consensus 4 ~~~LivALD~~~-~~~al~l~~~ 25 (259)
T 3tfx_A 4 DRPVIVALDLDN-EEQLNKILSK 25 (259)
T ss_dssp CCCEEEECCCSC-HHHHHHHHHT
T ss_pred CCCeEEEeCCCC-HHHHHHHHHH
Confidence 368999999853 3344444443
No 378
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=22.92 E-value=73 Score=22.91 Aligned_cols=26 Identities=8% Similarity=0.017 Sum_probs=21.6
Q ss_pred HhHHHHHHHHHhhcccCCCEEEEEEE
Q 032042 15 ACSKKALQWAADNVVRNGDHLILVTV 40 (148)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~v~ll~v 40 (148)
..+++.+++|.++|++...+|+++|-
T Consensus 167 ~~~eRIar~AFe~A~~rrkkVT~v~K 192 (361)
T 3udu_A 167 KEIERIARIAFESARIRKKKVHLIDK 192 (361)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 46788999999999888888888875
No 379
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=22.70 E-value=42 Score=20.94 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=21.7
Q ss_pred ChhHHHHHHHhhcCCcEEEEEecCCCc
Q 032042 107 DPREKICEAIDKIPLSCLVIGNRGLGK 133 (148)
Q Consensus 107 ~~~~~I~~~a~~~~~dliV~g~~~~~~ 133 (148)
+.-..|++.|++.++||||.--.+..+
T Consensus 101 El~~~i~~lA~~v~adliI~pL~~E~~ 127 (153)
T 2k4m_A 101 EIHSSLMRVADAVGARLIIKPLTGEDI 127 (153)
T ss_dssp TTHHHHHHHHHHHTCEEEEECBTTBCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcC
Confidence 556889999999999999986555443
No 380
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=22.68 E-value=1.8e+02 Score=19.78 Aligned_cols=24 Identities=4% Similarity=-0.004 Sum_probs=13.2
Q ss_pred ChhHHHHHHHhhcCCcEEEEEecC
Q 032042 107 DPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 107 ~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
.....|...++..+.+.-+++..+
T Consensus 188 ~~~~~i~~q~~~~g~~~~~~~~~~ 211 (327)
T 3ckm_A 188 TELAEMKGYLTNIVPNLAIYASSR 211 (327)
T ss_dssp HHHHHHHHHHTTTCTTCEEEECGG
T ss_pred HHHHHHHHHHHhhhccCCEEeeec
Confidence 334555556666666665555443
No 381
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=22.59 E-value=1.5e+02 Score=22.52 Aligned_cols=48 Identities=6% Similarity=-0.013 Sum_probs=36.5
Q ss_pred hhHHHHHHHhhhcCceEEEEEe-----eCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 83 ETLDIVNTVARQKQIVVVMKIF-----WGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..+..+.+.+++.|..+...-. .|++.+.|.+.+++.+++-|.+-..+
T Consensus 67 saMr~fa~~L~~~G~~v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~~P~ 119 (522)
T 3zxs_A 67 AAMRKFARRLQERGFRVAYSRLDDPDTGPSIGAELLRRAAETGAREAVATRPG 119 (522)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEECCS
T ss_pred HHHHHHHHHHHhCCCeEEEEeccCccccCCHHHHHHHHHHHcCCCEEEEeCcc
Confidence 4556677777777888777542 26889999999999999988886433
No 382
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=22.57 E-value=67 Score=18.61 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=22.2
Q ss_pred HHHHHHhhhcCceEEEEEeeCCh-hHHHH-HHHhhcCCcEEEEEecC
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDP-REKIC-EAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~-~~~I~-~~a~~~~~dliV~g~~~ 130 (148)
+.+.+.+++.|+++.+......- ...|. +.+.+ +|+||+....
T Consensus 23 eaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~--Ad~VIiA~d~ 67 (106)
T 2r48_A 23 ENLQKAADRLGVSIKVETQGGIGVENKLTEEEIRE--ADAIIIAADR 67 (106)
T ss_dssp HHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHH--CSEEEEEESS
T ss_pred HHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHh--CCEEEEEeCC
Confidence 33455556678877666543111 11111 12233 8999997664
No 383
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=22.51 E-value=1.5e+02 Score=21.78 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcCCCChhhHHHHHHHhhhc
Q 032042 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (148)
Q Consensus 16 ~s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (148)
....||..|+.. +.+|..++++++.... . . + .... .+ .....+.+..+.+.+++.
T Consensus 14 ~DN~aL~~A~~~----~~~v~~vfi~dp~~~~--------~---~--~--~~~~---~r---~~Fl~~sL~~L~~~L~~~ 68 (440)
T 2e0i_A 14 EDNTGLNYALSE----CDRVIPVFIADPRQLI--------N---N--P--YKSE---FA---VSFMINSLLELDDELRKK 68 (440)
T ss_dssp SSCHHHHHHHHH----SSEEEEEEEECHHHHS--------S---C--T--TCCH---HH---HHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHhc----CCCEEEEEEeChhhhc--------c---C--C--cCCH---HH---HHHHHHHHHHHHHHHHHc
Confidence 445677777762 5689999998863210 0 0 0 0000 00 011245666777777777
Q ss_pred CceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 96 QIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 96 ~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
|..+.+ ..|++.+.|.+.++ +++.|+.-
T Consensus 69 G~~L~v--~~g~~~~~l~~l~~--~~~~v~~~ 96 (440)
T 2e0i_A 69 GSRLNV--FFGEAEKVVSRFFN--KVDAIYVN 96 (440)
T ss_dssp TCCCEE--EESCHHHHHHHHCT--TCSEEEEE
T ss_pred CCeEEE--EECCHHHHHHHHHc--CCCEEEEe
Confidence 776544 45899999999988 89988873
No 384
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*
Probab=22.45 E-value=2e+02 Score=19.85 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=15.1
Q ss_pred hHHHHHHHhhcCCcEEEE
Q 032042 109 REKICEAIDKIPLSCLVI 126 (148)
Q Consensus 109 ~~~I~~~a~~~~~dliV~ 126 (148)
.+.|.+.+++.++|+|+.
T Consensus 118 ~~~l~~~ir~~rP~vV~t 135 (303)
T 1q74_A 118 VGALVAIIRELRPHVVVT 135 (303)
T ss_dssp HHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 467788889999999886
No 385
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=22.41 E-value=1.6e+02 Score=18.96 Aligned_cols=43 Identities=2% Similarity=0.070 Sum_probs=24.3
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
...+.+...+...|+.+. . ..+.. ..++.++...+|+|++...
T Consensus 34 ~~~~~l~~~L~~~g~~v~--~-~~~~~-~al~~~~~~~~dlvllD~~ 76 (250)
T 3r0j_A 34 NIVELLSVSLKFQGFEVY--T-ATNGA-QALDRARETRPDAVILDVX 76 (250)
T ss_dssp HHHHHHHHHHHHTTCEEE--E-ESSHH-HHHHHHHHHCCSEEEEESC
T ss_pred HHHHHHHHHHHHCCCEEE--E-ECCHH-HHHHHHHhCCCCEEEEeCC
Confidence 344455555655666543 1 23433 3445566677898888654
No 386
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=22.40 E-value=99 Score=19.59 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=27.7
Q ss_pred ChhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh---cCCcEEEEEe
Q 032042 81 DPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK---IPLSCLVIGN 128 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dliV~g~ 128 (148)
....++.+++.+...++.-.+.+..++..+.+-..... ..+|+|++..
T Consensus 98 ~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~ 148 (225)
T 3tr6_A 98 DEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDA 148 (225)
T ss_dssp CHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECS
T ss_pred CHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECC
Confidence 34566666776766666522344456665555444322 5689998744
No 387
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=22.33 E-value=90 Score=22.46 Aligned_cols=28 Identities=4% Similarity=-0.018 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 15 ACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
..+++.+++|.++|++...+|+++|=-.
T Consensus 170 ~~~eRiar~AFe~A~~rrkkVt~v~KaN 197 (363)
T 1cnz_A 170 FEIERIARIAFESARKRRRKVTSIDKAN 197 (363)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 4678999999999988877888877543
No 388
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=22.32 E-value=1.2e+02 Score=17.24 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=8.5
Q ss_pred HHHhhcCCcEEEEEe
Q 032042 114 EAIDKIPLSCLVIGN 128 (148)
Q Consensus 114 ~~a~~~~~dliV~g~ 128 (148)
+.+++..+|+|++..
T Consensus 40 ~~~~~~~~dlvi~D~ 54 (140)
T 3n53_A 40 EQIDHHHPDLVILDM 54 (140)
T ss_dssp HHHHHHCCSEEEEET
T ss_pred HHHhcCCCCEEEEeC
Confidence 444455666666654
No 389
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=22.24 E-value=1.6e+02 Score=18.63 Aligned_cols=22 Identities=14% Similarity=-0.123 Sum_probs=16.2
Q ss_pred hHHHHHHHhhcCCcEEEEEecCCC
Q 032042 109 REKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 109 ~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
.+.+.+..++ +|.||++++-..
T Consensus 64 ~~~~~~~l~~--AD~iV~~~P~y~ 85 (196)
T 3lcm_A 64 MEKYRDLVTW--ADHLIFIFPIWW 85 (196)
T ss_dssp GHHHHHHHHH--CSEEEEEEECBT
T ss_pred HHHHHHHHHh--CCEEEEECchhh
Confidence 3556666666 999999988644
No 390
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=22.22 E-value=1.1e+02 Score=16.98 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=19.0
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhc-CCcEEEEEec
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKI-PLSCLVIGNR 129 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~-~~dliV~g~~ 129 (148)
+.+...+...|+.+.. ..+.. ...+..++. .+|+|++...
T Consensus 19 ~~l~~~L~~~g~~v~~---~~~~~-~a~~~l~~~~~~dlvi~d~~ 59 (132)
T 2rdm_A 19 LDFESTLTDAGFLVTA---VSSGA-KAIEMLKSGAAIDGVVTDIR 59 (132)
T ss_dssp HHHHHHHHHTTCEEEE---ESSHH-HHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHHcCCEEEE---ECCHH-HHHHHHHcCCCCCEEEEeee
Confidence 3444444444554332 22333 333444444 6777777654
No 391
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=22.21 E-value=1.4e+02 Score=21.59 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=22.5
Q ss_pred CCccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecC
Q 032042 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (148)
Q Consensus 2 ~~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~ 43 (148)
|++++||| +..++.+...++. ++..|.++++++..+.
T Consensus 4 m~~~kiLI-~g~g~~a~~i~~a----a~~~G~~~v~v~~~~~ 40 (446)
T 3ouz_A 4 MEIKSILI-ANRGEIALRALRT----IKEMGKKAICVYSEAD 40 (446)
T ss_dssp TCCCEEEE-CCCHHHHHHHHHH----HHHTTCEEEEEEEGGG
T ss_pred cccceEEE-ECCCHHHHHHHHH----HHHcCCEEEEEEcCcc
Confidence 34789999 4544444444433 4456888888876543
No 392
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=22.12 E-value=97 Score=22.75 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=33.3
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCC
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~ 44 (148)
++|+|..|....|....+.++.-..+.|.+|+.+...+.|
T Consensus 42 ~~VvIG~D~R~ss~~l~~a~~~gl~~~G~~V~~~g~~pTP 81 (455)
T 1wqa_A 42 PLVVVGRDTRVSGEMLKEALISGLLSVGCDVIDVGIAPTP 81 (455)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHHHHHTTCEEEEEEECCHH
T ss_pred CeEEEEeCCCcCHHHHHHHHHHHHHHcCCeEEEeCCCChH
Confidence 4599999999999988888888888889999888766544
No 393
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=22.11 E-value=1.1e+02 Score=16.73 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=9.4
Q ss_pred HHHHHhhcCCcEEEEEe
Q 032042 112 ICEAIDKIPLSCLVIGN 128 (148)
Q Consensus 112 I~~~a~~~~~dliV~g~ 128 (148)
..+..+...+|++++..
T Consensus 39 ~~~~~~~~~~dlvi~d~ 55 (124)
T 1dc7_A 39 VLAALASKTPDVLLSDI 55 (124)
T ss_dssp HHHHSSSCCCSCEEECS
T ss_pred HHHHHhcCCCCEEEEee
Confidence 33444555667666643
No 394
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=22.07 E-value=1.4e+02 Score=19.07 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=27.3
Q ss_pred HHHHHHhhhcCce-EEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 86 DIVNTVARQKQIV-VVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 86 ~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
+.+...++..|++ +++... +...+++..+..++|+++.+
T Consensus 40 dl~~~i~~~~g~~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 79 (257)
T 2q88_A 40 DVAREIFKRLGVADVVASIS---EYGAMIPGLQAGRHDAITAG 79 (257)
T ss_dssp HHHHHHHHHTTCCEEEEEEC---CGGGHHHHHHTTSCSEECSC
T ss_pred HHHHHHHHHcCCCeeeEEeC---CHHHHHHHHHCCCcCEEEec
Confidence 4455556667887 766543 46778888888999988643
No 395
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=22.06 E-value=1.4e+02 Score=19.05 Aligned_cols=46 Identities=11% Similarity=-0.089 Sum_probs=26.0
Q ss_pred HHHHHHHhhhcCceEEEEEee------CChhHHHHHHHhhcCCcEEEEEecCCC
Q 032042 85 LDIVNTVARQKQIVVVMKIFW------GDPREKICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~------g~~~~~I~~~a~~~~~dliV~g~~~~~ 132 (148)
.+.+.+.+++.|.+++..-.. .+....+.+...+ +|.||++++-..
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~--AD~iv~~~P~y~ 70 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIET--HDSLVWQFPIYW 70 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHT--SSSEEEEEECBT
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHh--CCEEEEEcChhh
Confidence 334444455556666655432 1224445555555 999999987643
No 396
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=22.04 E-value=1.2e+02 Score=23.42 Aligned_cols=41 Identities=15% Similarity=0.019 Sum_probs=27.8
Q ss_pred HHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 88 VNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
+.+.+.++|+++... ..-....+++..++.++|+||+...+
T Consensus 45 ~~~~a~~~~ip~~~~--~~~~~~~~~~~l~~~~~d~iv~~~~~ 85 (660)
T 1z7e_A 45 VARLAAERGIPVYAP--DNVNHPLWVERIAQLSPDVIFSFYYR 85 (660)
T ss_dssp HHHHHHHHTCCEECC--SCTTSHHHHHHHHHHCCSEEEEESCC
T ss_pred HHHHHHHcCCCEecc--CCCCcHHHHHHHHhcCCCEEEEcCcc
Confidence 555667788886431 11123467788888999999997664
No 397
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=21.90 E-value=2.2e+02 Score=20.33 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=54.1
Q ss_pred cEEEEEecCCH--hHHHHHHHHHhhcccC----CCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHHhhcC
Q 032042 5 RRVGVAVDFSA--CSKKALQWAADNVVRN----GDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA 78 (148)
Q Consensus 5 ~~ILv~~d~s~--~s~~al~~a~~la~~~----~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
.++||-+.+.. +.+.++++|.+++... +.-+.++.+.-..+... ..|-+.+........+. +.+.
T Consensus 49 ~rllVIaGPCSied~eq~leyA~~Lk~~~~~~~d~l~~vmR~y~~KPRTs---~g~kGL~nDP~ld~s~~----i~~G-- 119 (346)
T 3tqk_A 49 DRVAVVVGPCSIHDPAAAIEYATKLKEQVKKFHKDILIIMRVYFEKPRTT---IGWKGFINDPDLDNSYN----INKG-- 119 (346)
T ss_dssp CSEEEEEECSSCSCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCCSS---CSCCCTTTCTTSSSCCC----HHHH--
T ss_pred CCEEEEEecCccCCHHHHHHHHHHHHHHHhhhcccceEEeeecccCCCCC---cCccccccCCCCCCCcc----HHHH--
Confidence 35677666643 5566777877766432 23355666544433322 23433321111111111 1111
Q ss_pred CCChhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecCC
Q 032042 79 KPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL 131 (148)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~~ 131 (148)
-++..++.....+.|+++-..+..-...+-+.++ +|.+-+|+|..
T Consensus 120 ---L~~~R~ll~~~~e~GLpiatE~ld~~~~qyv~dl-----vs~~aIGARt~ 164 (346)
T 3tqk_A 120 ---LRLARNLLSDLTNMGLPCATEFLDVITPQYFAEL-----ITWGAIGARTV 164 (346)
T ss_dssp ---HHHHHHHHHHHHHTTCCEEEECCSSSGGGGTGGG-----CSEEEECGGGT
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEecCcCCHHHHHHH-----hheeeeCcccc
Confidence 1222222223466799988888754334433332 78888888873
No 398
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=21.89 E-value=92 Score=22.67 Aligned_cols=27 Identities=7% Similarity=0.025 Sum_probs=22.2
Q ss_pred HhHHHHHHHHHhhcccCCCEEEEEEEe
Q 032042 15 ACSKKALQWAADNVVRNGDHLILVTVV 41 (148)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~v~ll~v~ 41 (148)
..+++.+++|.++|++...+|+++|--
T Consensus 186 ~~~eRIar~AFe~A~~rrkkVT~v~Ka 212 (390)
T 3u1h_A 186 EEIERIIRKAFELALTRKKKVTSVDKA 212 (390)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECT
T ss_pred HHHhHHHHHHHHHHHHcCCceEEEECC
Confidence 477899999999998888888888753
No 399
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=21.79 E-value=2e+02 Score=20.90 Aligned_cols=42 Identities=14% Similarity=-0.006 Sum_probs=25.2
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChhHH----HHHHHhhcCCcEEEE
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPREK----ICEAIDKIPLSCLVI 126 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----I~~~a~~~~~dliV~ 126 (148)
.....+...+++.|.++.......|-.+. |.+.++ ++|+||+
T Consensus 207 sN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~--~~DlVit 252 (402)
T 1uz5_A 207 INGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVN--VGDVVVI 252 (402)
T ss_dssp CHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHH--HCSEEEE
T ss_pred chHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhh--CCCEEEE
Confidence 34445677777788886655444444333 433444 3899887
No 400
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=21.67 E-value=2e+02 Score=19.57 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=9.8
Q ss_pred hHHHHHHHhhcCCcEEEEEe
Q 032042 109 REKICEAIDKIPLSCLVIGN 128 (148)
Q Consensus 109 ~~~I~~~a~~~~~dliV~g~ 128 (148)
...+++.+++.+.+.-++|.
T Consensus 206 a~~~~~~~~~~g~~~~~~~~ 225 (356)
T 3ipc_A 206 AGLIIRQAADQGLKAKLVSG 225 (356)
T ss_dssp HHHHHHHHHHHTCCCEEEEC
T ss_pred HHHHHHHHHHCCCCCcEEEe
Confidence 33445555555555444443
No 401
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=21.64 E-value=58 Score=21.43 Aligned_cols=48 Identities=6% Similarity=0.019 Sum_probs=27.5
Q ss_pred ChhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEe
Q 032042 81 DPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (148)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~ 128 (148)
....++.+++.+...++.-.+.+..++..+.+........+|+|++..
T Consensus 97 s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~ 144 (248)
T 3tfw_A 97 DAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDA 144 (248)
T ss_dssp CHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECS
T ss_pred CHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECC
Confidence 345666667767666665233444566655444332233689998844
No 402
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=21.58 E-value=2.6e+02 Score=20.99 Aligned_cols=35 Identities=17% Similarity=0.021 Sum_probs=27.0
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
+++++++.+.-+|.-++..+... .+.++..+|+..
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a---~G~~v~av~v~~ 262 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRA---IGKNLTCVFVDN 262 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEEC
T ss_pred cceEEEecCCCCHHHHHHHHHHH---hCCCEEEEEEeC
Confidence 68999999988888777776653 246788888865
No 403
>3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex, citrate AS protein LI ligand binding, inhibitor design; HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB: 2zhx_A*
Probab=21.55 E-value=1.9e+02 Score=19.43 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=25.0
Q ss_pred EeeCChhHHHHHHHhhcCCcEEEEEecCCCccc--eeeccc
Q 032042 103 IFWGDPREKICEAIDKIPLSCLVIGNRGLGKLK--RLDFIN 141 (148)
Q Consensus 103 ~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~--~~~~Gs 141 (148)
+.+|..+......+.. ..-.|+-+...|+++ +-|+||
T Consensus 177 iLWG~~Aq~k~~~I~~--~~h~vl~s~HPSPLSa~rgFfg~ 215 (238)
T 3a7n_A 177 ILWGRDASTLKPMLAA--GNCVAIESPHPSPLSASRGFFGS 215 (238)
T ss_dssp EEESHHHHTTHHHHTT--SSEEEEEECCSSTTTGGGTTTTC
T ss_pred EEECHHHHHhhcccCc--CCceEEecCCCCccccCCCCCCC
Confidence 5578888777777654 345566666688874 457886
No 404
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=21.53 E-value=1.2e+02 Score=20.17 Aligned_cols=38 Identities=11% Similarity=0.029 Sum_probs=25.2
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
-++||| +|+-=.+-..+..++++.+..|+.+..+.++-
T Consensus 136 Gk~VLI-VDDVitTG~Tl~~a~~~L~~~Ga~vv~v~vlv 173 (232)
T 3mjd_A 136 NKKVLL-IDDVMTAGTAFYESYNKLKIINAKIAGVVLSI 173 (232)
T ss_dssp TCEEEE-ECSCCSSSHHHHHHHHHHHTTTCEEEEEEEEE
T ss_pred CCEEEE-EEeeccccHHHHHHHHHHHHCCCEEEEEEEEE
Confidence 357777 56555555667777788888888765555443
No 405
>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1
Probab=21.50 E-value=98 Score=18.01 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=11.2
Q ss_pred cCCcEEEEEecCCC
Q 032042 119 IPLSCLVIGNRGLG 132 (148)
Q Consensus 119 ~~~dliV~g~~~~~ 132 (148)
.++|+||+|+..+.
T Consensus 60 ~~~evlliGTG~~~ 73 (113)
T 1ihn_A 60 EKPESIIIGSGVHG 73 (113)
T ss_dssp TCCSEEEEECCTTC
T ss_pred cCCCEEEECCCCCc
Confidence 35999999987664
No 406
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=21.43 E-value=1.8e+02 Score=19.04 Aligned_cols=47 Identities=0% Similarity=-0.191 Sum_probs=28.6
Q ss_pred hhHHHHHHHhhhcCceEEEEEeeCChh--HHHHHHHhhcCCcEEEEEec
Q 032042 83 ETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliV~g~~ 129 (148)
...+.+.+.+++.|+.+......+++. ...++.....++|-||+...
T Consensus 22 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 22 KAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 455666677777787766654444442 34455555667887777543
No 407
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=21.32 E-value=1.2e+02 Score=22.45 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=32.7
Q ss_pred ccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCC
Q 032042 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (148)
Q Consensus 4 ~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~ 44 (148)
.++|+|.-|....+....+.++.-..+.|.+|+.+...+.|
T Consensus 61 ~~~VvIG~D~R~ss~~~~~a~a~gl~s~Gi~V~~~g~~pTP 101 (469)
T 3pdk_A 61 RPKVIIGRDTRISGHMLEGALVAGLLSTGAEVMRLGVISTP 101 (469)
T ss_dssp SCEEEEEECSCTTHHHHHHHHHHHHHTTTCEEEEEEECCHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHCCCEEEEeCCCChH
Confidence 36899999998888887777777777889999888765544
No 408
>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC, structural genomics, struc genomics consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB: 2guu_A*
Probab=21.25 E-value=2.3e+02 Score=20.25 Aligned_cols=45 Identities=9% Similarity=-0.009 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHh----hcCCcEEEEEec
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAID----KIPLSCLVIGNR 129 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~----~~~~dliV~g~~ 129 (148)
++++.+.+++.|..+-.....+|.......+++ ..++|++.+-..
T Consensus 150 L~~~v~~lr~~g~~VflDlK~~DIgnTva~ya~a~~~~lgaD~vTVhp~ 198 (353)
T 2ffc_A 150 LKNVFDYLHHLNVPTILDIKMNDIGNTVKHYRKFIFDYLRSDSCTANIY 198 (353)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred HHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 444455566668888777777888777777773 578998888443
No 409
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=21.15 E-value=1.1e+02 Score=19.85 Aligned_cols=48 Identities=8% Similarity=0.130 Sum_probs=27.2
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh---cCCcEEEEEec
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK---IPLSCLVIGNR 129 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dliV~g~~ 129 (148)
.+..+.+++.+...|+.-.+.+..++..+.+.+.... ..+|+|++...
T Consensus 107 ~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 107 PNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD 157 (232)
T ss_dssp HHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence 4555556666655565423344456766655544332 56899988543
No 410
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=21.09 E-value=2.2e+02 Score=20.03 Aligned_cols=40 Identities=8% Similarity=0.064 Sum_probs=27.2
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
+.+...++ ++...+.+..+.-..+.++.++...+|++.++
T Consensus 21 ~~l~~~~~--~~~~~veCv~~~s~~~Ci~aI~~g~aD~~~ld 60 (332)
T 1iej_A 21 NNLRDLTQ--QERISLTCVQKATYLDCIKAIANNEADAITLD 60 (332)
T ss_dssp HHHHHHTT--TSSEEEEEEECSSHHHHHHHHHTTSCCBEEEC
T ss_pred HHHHHHHH--hcCCceEEEEcCCHHHHHHHHHcCCCcEEEeC
Confidence 33444442 34445555556667888899999999999996
No 411
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=21.04 E-value=1.7e+02 Score=19.36 Aligned_cols=34 Identities=12% Similarity=0.062 Sum_probs=29.5
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEE
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLI 36 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ 36 (148)
+++-|++|++++-+.+....|..++.+.++.+|+
T Consensus 149 ~v~EVIlAtnpTvEGeaTa~Yi~~~Lk~~~vkvT 182 (212)
T 3vdp_A 149 SVKEVILATNPDIEGEATAMYIAKLLKPFGVKVT 182 (212)
T ss_dssp CCSEEEECCCSSHHHHHHHHHHHHHHTTTTCEEE
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHhhhcCCCee
Confidence 4678999999999999999999999988876654
No 412
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=21.01 E-value=46 Score=21.07 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=31.3
Q ss_pred CccEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecCC
Q 032042 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (148)
Q Consensus 3 ~~~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~~ 44 (148)
..+.++|.+..|..+...++ ++..++..+++++++...+..
T Consensus 91 ~~~dvvI~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~~~s 131 (201)
T 3fxa_A 91 QKEDILILISKGGNTGELLN-LIPACKTKGSTLIGVTENPDS 131 (201)
T ss_dssp CTTCEEEEECSSSCCHHHHT-THHHHHHHTCEEEEEESCTTS
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHcCCeEEEEECCCCC
Confidence 34678999999888877765 455588889999988876554
No 413
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=20.96 E-value=1.8e+02 Score=18.96 Aligned_cols=43 Identities=5% Similarity=-0.058 Sum_probs=26.2
Q ss_pred hHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..+.+...+...|+.+. . ..+..++ ++..++..+|+|++...-
T Consensus 141 ~~~~l~~~L~~~g~~v~--~-a~~~~ea-l~~l~~~~~dlvl~D~~m 183 (254)
T 2ayx_A 141 NRRLLADQLGSLGYQCK--T-ANDGVDA-LNVLSKNHIDIVLSDVNM 183 (254)
T ss_dssp HHHHHHHHHHHHTSEEE--E-ECCSHHH-HHHHHHSCCSEEEEEESS
T ss_pred HHHHHHHHHHHcCCEEE--E-ECCHHHH-HHHHHhCCCCEEEEcCCC
Confidence 34556666666677543 2 2343343 455666789999997654
No 414
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=20.95 E-value=1.3e+02 Score=17.50 Aligned_cols=39 Identities=15% Similarity=0.057 Sum_probs=30.4
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEEEEecC
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll~v~~~ 43 (148)
.-++|.++.......=+++-+..|...+.++.++++...
T Consensus 40 ~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~ 78 (111)
T 1eiw_A 40 DAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGL 78 (111)
T ss_dssp SEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSS
T ss_pred CEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 345556666666788899999999999999999888654
No 415
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase, phosphotransferase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Probab=20.90 E-value=92 Score=23.74 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=30.5
Q ss_pred cEEEEEecCCHhHHHHHHHHHhhcccCCCEEEEE
Q 032042 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILV 38 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~al~~a~~la~~~~~~v~ll 38 (148)
.+|+|..|....+..+.+.++..+...|.++.++
T Consensus 54 ~~VvVG~D~R~~s~~~~~~~a~~l~a~Gv~V~~~ 87 (561)
T 3pmg_A 54 ATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVI 87 (561)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEeCCCccHHHHHHHHHHHHHHCCCEEEEe
Confidence 5899999999999999999999888889988877
No 416
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=20.84 E-value=1.2e+02 Score=16.90 Aligned_cols=44 Identities=5% Similarity=0.191 Sum_probs=22.3
Q ss_pred hHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEecC
Q 032042 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~~ 130 (148)
..+.+...+.+.|..+.... .+..++ .+..++..+|+|++...-
T Consensus 13 ~~~~l~~~L~~~g~~v~~~~--~~~~~a-~~~~~~~~~dlii~d~~l 56 (134)
T 3f6c_A 13 AIAAIRNLLIKNDIEILAEL--TEGGSA-VQRVETLKPDIVIIDVDI 56 (134)
T ss_dssp HHHHHHHHHHHTTEEEEEEE--SSSTTH-HHHHHHHCCSEEEEETTC
T ss_pred HHHHHHHHHhhCCcEEEEEc--CCHHHH-HHHHHhcCCCEEEEecCC
Confidence 34445555655564432222 232232 344455678888886543
No 417
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=20.83 E-value=1.5e+02 Score=18.90 Aligned_cols=39 Identities=10% Similarity=0.279 Sum_probs=26.9
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEE
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG 127 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g 127 (148)
+.++..+++.|++++.... +...+.+..+..++|+++.|
T Consensus 59 dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 97 (268)
T 3qax_A 59 DLAKAISEKLGKQLEVREF---AFDALILNLKKHRIDAILAG 97 (268)
T ss_dssp HHHHHHHHHHTCEEEEEEC---CGGGHHHHHHHTSSSEECSC
T ss_pred HHHHHHHHHhCCeEEEEec---CHHHHHHHHhCCCccEEeec
Confidence 3445555666888777653 56677788888899998743
No 418
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=20.82 E-value=1.2e+02 Score=19.56 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=26.9
Q ss_pred hhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh--------------cCCcEEEEEe
Q 032042 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--------------IPLSCLVIGN 128 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--------------~~~dliV~g~ 128 (148)
....+.+++.+...++.-.+.+..++..+.+.+.... ..+|+|++..
T Consensus 95 ~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~ 155 (239)
T 2hnk_A 95 EEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDA 155 (239)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECS
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeC
Confidence 4555566666655565422334456766655544332 5689998853
No 419
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=20.68 E-value=1.2e+02 Score=18.42 Aligned_cols=37 Identities=14% Similarity=-0.056 Sum_probs=22.6
Q ss_pred cEEEEEecCCHhHHH--HHHHHHhhcccCCCEEEEEEEe
Q 032042 5 RRVGVAVDFSACSKK--ALQWAADNVVRNGDHLILVTVV 41 (148)
Q Consensus 5 ~~ILv~~d~s~~s~~--al~~a~~la~~~~~~v~ll~v~ 41 (148)
+.|++-+|+.+.... ....++..++..+..++.+.+-
T Consensus 108 ~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg 146 (185)
T 3n2n_F 108 SVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVK 146 (185)
T ss_dssp EEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECS
T ss_pred cEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEec
Confidence 567777788664433 2344555566677777666653
No 420
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A 3nt7_C
Probab=20.56 E-value=1.6e+02 Score=19.49 Aligned_cols=36 Identities=8% Similarity=-0.051 Sum_probs=22.3
Q ss_pred EeeCChhHHHHHHHhhcCCcEEEEEecCCCccceeeccc
Q 032042 103 IFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRLDFIN 141 (148)
Q Consensus 103 ~~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~Gs 141 (148)
+.+|..+......+...+ +|+.+ .+.|+..+-|+||
T Consensus 157 iLWG~~Aq~k~~~I~~~~--~vl~s-~HPSPa~rgFfg~ 192 (218)
T 2owr_A 157 CLGKTDFSNIRAKLESPV--TTIVG-YHPAARDRQFEKD 192 (218)
T ss_dssp EECHHHHHHHHHHCSCCC--EEEEE-CCTTC----CCCC
T ss_pred EEeCHHHHHHHhccCCCC--cEEEe-cCCCcCCCCCCCC
Confidence 568988888888776533 55555 4467766678887
No 421
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=20.55 E-value=1.6e+02 Score=18.20 Aligned_cols=37 Identities=11% Similarity=0.225 Sum_probs=26.5
Q ss_pred HHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEE
Q 032042 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCL 124 (148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dli 124 (148)
.+.++..++..|+++++... +...+.+..+...+|++
T Consensus 38 ~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~ 74 (234)
T 3h7m_A 38 VELTRAIAEVMGMTVEFRLG---AWSEMFSALKSGRVDVL 74 (234)
T ss_dssp HHHHHHHHHHHTCCEEEEEE---CGGGHHHHHHTTSSSEE
T ss_pred HHHHHHHHHHcCCceEEEeC---CHHHHHHHHhCCCeeEE
Confidence 34455555666888887643 57778888889999995
No 422
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=20.55 E-value=1e+02 Score=22.10 Aligned_cols=28 Identities=11% Similarity=-0.037 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 15 ACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
..+++.+++|.++|++...+|+++|=-.
T Consensus 165 ~~~eRiar~AFe~A~~rrkkVt~v~KaN 192 (358)
T 1a05_A 165 DEIRRIAHVAFRAAQGRRKQLCSVDKAN 192 (358)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 4678999999999988877888877543
No 423
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=20.53 E-value=54 Score=20.43 Aligned_cols=38 Identities=11% Similarity=-0.173 Sum_probs=20.9
Q ss_pred cEEEEEecCCHh-HHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 5 RRVGVAVDFSAC-SKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 5 ~~ILv~~d~s~~-s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
+.|++-+|+.++ .......++..++..+.+++.+.+-.
T Consensus 112 ~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~ 150 (198)
T 1n3y_A 112 KILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGL 150 (198)
T ss_dssp EEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESG
T ss_pred eEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccc
Confidence 456667787554 22222333344556677777776633
No 424
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=20.45 E-value=1.3e+02 Score=17.05 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=9.1
Q ss_pred HHHhhcCCcEEEEEec
Q 032042 114 EAIDKIPLSCLVIGNR 129 (148)
Q Consensus 114 ~~a~~~~~dliV~g~~ 129 (148)
+..+...+|+|++...
T Consensus 41 ~~l~~~~~dlvi~D~~ 56 (138)
T 3c3m_A 41 EALNATPPDLVLLDIM 56 (138)
T ss_dssp HHHHHSCCSEEEEESC
T ss_pred HHHhccCCCEEEEeCC
Confidence 4445556677666543
No 425
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=20.39 E-value=1.2e+02 Score=16.48 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=19.7
Q ss_pred HHHHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
+.+...+...|..+. . ..+..++ .+..++..+|++++...
T Consensus 15 ~~l~~~l~~~~~~v~--~-~~~~~~a-~~~~~~~~~dlvl~D~~ 54 (120)
T 2a9o_A 15 DIIKFNMTKEGYEVV--T-AFNGREA-LEQFEAEQPDIIILDLM 54 (120)
T ss_dssp HHHHHHHHHTTCEEE--E-ESSHHHH-HHHHHHHCCSEEEECSS
T ss_pred HHHHHHHHhcCcEEE--E-ecCHHHH-HHHHHhCCCCEEEEecc
Confidence 334444444555432 1 2233333 34445566788887644
No 426
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=20.38 E-value=1e+02 Score=22.17 Aligned_cols=28 Identities=7% Similarity=-0.032 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 15 ACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
..+++.+++|.++|++...+|+++|=-.
T Consensus 174 ~~~eRIar~AFe~A~~rrkkVt~v~KaN 201 (366)
T 1vlc_A 174 KTVERIARTAFEIAKNRRKKVTSVDKAN 201 (366)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECCc
Confidence 4678999999999988877888877543
No 427
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=20.36 E-value=89 Score=22.20 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHhhcccCCCEEEEEEEec
Q 032042 15 ACSKKALQWAADNVVRNGDHLILVTVVP 42 (148)
Q Consensus 15 ~~s~~al~~a~~la~~~~~~v~ll~v~~ 42 (148)
..+++.+++|.++|++...+|+++|=-.
T Consensus 154 ~~~eRiar~AFe~A~~rrkkVt~v~KaN 181 (337)
T 1w0d_A 154 FGVRRVVADAFERARRRRKHLTLVHKTN 181 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECCc
Confidence 4678999999999988878888887533
No 428
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=20.35 E-value=1.7e+02 Score=18.37 Aligned_cols=19 Identities=16% Similarity=0.129 Sum_probs=13.6
Q ss_pred HHHHHhhcCCcEEEEEecCCC
Q 032042 112 ICEAIDKIPLSCLVIGNRGLG 132 (148)
Q Consensus 112 I~~~a~~~~~dliV~g~~~~~ 132 (148)
+.+...+ +|.||+++.-..
T Consensus 88 ~~~~l~~--aD~iv~~~P~y~ 106 (208)
T 2hpv_A 88 LTDQFLS--ADKVVIANPMWN 106 (208)
T ss_dssp HHHHHHH--CSEEEEEEECBT
T ss_pred HHHHHHh--CCEEEEEecccc
Confidence 4444555 999999987644
No 429
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=20.31 E-value=1.2e+02 Score=23.64 Aligned_cols=40 Identities=18% Similarity=0.014 Sum_probs=25.0
Q ss_pred HHHHhhhcCceEEEEEeeCChhHHHHHHHhhcCCcEEEEEec
Q 032042 88 VNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~g~~ 129 (148)
+...++..|+++..--. ..+ +.+++.+.+.++|+|++.+-
T Consensus 530 va~~l~~aGfeVi~~g~-~~t-ee~v~aa~e~~adiv~lSsl 569 (637)
T 1req_B 530 SSPVWHIAGIDTPQVEG-GTT-AEIVEAFKKSGAQVADLCSS 569 (637)
T ss_dssp HHHHHHHTTCBCCEEEC-CCH-HHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHhCCeeEEeCCC-CCC-HHHHHHHHhcCCCEEEEecc
Confidence 34445555666443211 133 88888888889998888543
No 430
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=20.24 E-value=2.2e+02 Score=19.61 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=24.9
Q ss_pred hcCceEEEEEeeC-Ch--hHHHHHHHhhcCCcEEEEEec
Q 032042 94 QKQIVVVMKIFWG-DP--REKICEAIDKIPLSCLVIGNR 129 (148)
Q Consensus 94 ~~~~~~~~~~~~g-~~--~~~I~~~a~~~~~dliV~g~~ 129 (148)
..++++.+++..| +. ...+.+.+.+.++|.|++..+
T Consensus 124 ~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~g~ 162 (318)
T 1vhn_A 124 SVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTR 162 (318)
T ss_dssp HCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESS
T ss_pred hhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEcCC
Confidence 3467777777654 22 226788888899999998543
No 431
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=20.22 E-value=1e+02 Score=20.02 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhhcccCCCEEEEEE
Q 032042 16 CSKKALQWAADNVVRNGDHLILVT 39 (148)
Q Consensus 16 ~s~~al~~a~~la~~~~~~v~ll~ 39 (148)
.+...++.++++|...|++...+|
T Consensus 82 ~~~~~~~~~i~~a~~lG~~~v~~~ 105 (260)
T 1k77_A 82 EAHADIDLALEYALALNCEQVHVM 105 (260)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEC
Confidence 456778899999999999877665
No 432
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=20.17 E-value=1.3e+02 Score=16.84 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=23.4
Q ss_pred EEEEEecCC----HhHHHHHHHHHhhcccCCC-EEEEEEEec
Q 032042 6 RVGVAVDFS----ACSKKALQWAADNVVRNGD-HLILVTVVP 42 (148)
Q Consensus 6 ~ILv~~d~s----~~s~~al~~a~~la~~~~~-~v~ll~v~~ 42 (148)
++++-+..+ +....+++.|..++...+. ++.++-..+
T Consensus 3 k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~d 44 (117)
T 1jx7_A 3 KIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSD 44 (117)
T ss_dssp EEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGG
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEch
Confidence 555555543 4556788888876655366 776665544
No 433
>3l52_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, PSI-2, protein structure initiative; 1.35A {Streptomyces avermitilis} PDB: 3v75_A*
Probab=20.12 E-value=2.2e+02 Score=19.62 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=54.6
Q ss_pred cEEEEEecCCHh----------HHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCcCCCCCchhHHHH
Q 032042 5 RRVGVAVDFSAC----------SKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMK 74 (148)
Q Consensus 5 ~~ILv~~d~s~~----------s~~al~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
.++.|.+|++.. .....+++..++...+..+..+-+--.. +...|.
T Consensus 23 ~~LcvglDp~~~~lp~~~l~~~~~~~~~~~~~ivd~l~~~v~~~Kvg~~l---------f~~~G~--------------- 78 (284)
T 3l52_A 23 GPLCVGIDPHASLLADWGLSDDVAGLERFSRTVVEALGEHVAVFKPQSAF---------FERFGS--------------- 78 (284)
T ss_dssp CSCEEEECCCHHHHHHTTCCSSHHHHHHHHHHHHHHHTTTCSEEEEBHHH---------HHTTHH---------------
T ss_pred CCeEEEECCChhhccccccccchHHHHHHHHHHHHHhCCcceEEEeeHHH---------HHhcCH---------------
Confidence 357788888765 3455688888888776655544432211 000000
Q ss_pred hhcCCCChhhHHHHHHHhhhcCceEEEEEeeCChhHHHHHHHhh-------cCCcEEEEE
Q 032042 75 KYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK-------IPLSCLVIG 127 (148)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~-------~~~dliV~g 127 (148)
..-+.++++.+.+++.|..+-.....+|....+..+++. .++|++.+-
T Consensus 79 -----~G~~~l~~~i~~l~~~g~~VflDlK~~DIpnTv~~ya~~~~~~~~~lg~D~vTvh 133 (284)
T 3l52_A 79 -----RGVAVLEKTVAEARAAGALVVMDAKRGDIGSTMAAYAEAFLRKDSPLFSDALTVS 133 (284)
T ss_dssp -----HHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHSSTTSTTCCSEEEEC
T ss_pred -----HHHHHHHHHHHHHHHCCCcEEEEecccCcHHHHHHHHHHHhccccccCCcEEEEe
Confidence 001345555556666777777777667776666665543 467888773
No 434
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=20.10 E-value=2e+02 Score=19.02 Aligned_cols=48 Identities=13% Similarity=-0.022 Sum_probs=29.1
Q ss_pred hhHHHHHHHhhhcCceEEEEE-eeCChh--HHHHHHHhhcCCcEEEEEecC
Q 032042 83 ETLDIVNTVARQKQIVVVMKI-FWGDPR--EKICEAIDKIPLSCLVIGNRG 130 (148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~--~~I~~~a~~~~~dliV~g~~~ 130 (148)
...+.+.+.+++.|+.+.... ..+++. ...++.+...++|-||+....
T Consensus 21 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 71 (305)
T 3g1w_A 21 RCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAID 71 (305)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSS
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 556667777777788776633 233443 344555556788887775443
Done!