BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032043
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 11 KEDSKSATAHNENPTKEHHQPSNAELMASAK-----CVAEAAKATFSKESDKVDKAKVAG 65
+E + N + + P+N ++ AK CV+E S+ SDK K K
Sbjct: 33 REQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKT 92
Query: 66 A-AENLVAAGSKYGNLEENKYVDKAKDYLHQYH 97
E+L+ A G L +YVD K YLH+Y
Sbjct: 93 INGEDLLFA---MGTLGFEEYVDPLKIYLHKYR 122
>sp|Q09779|THO2_SCHPO THO complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=tho2 PE=1 SV=3
Length = 1628
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 18/77 (23%)
Query: 30 QPSNAE-------LMASAKCVAEAAKATFSKESDKVDKAKVA-----------GAAENLV 71
+PSN+E L +A ++ A+ S+E K+DK KVA + V
Sbjct: 1297 RPSNSEKLQRPQQLSVAATSAVDSKTASISEEQAKIDKQKVALNPSAPEFVPDSTPSDAV 1356
Query: 72 AAGSKYGNLEENKYVDK 88
A+ + NL ENK V+K
Sbjct: 1357 ASETDNKNLVENKAVEK 1373
>sp|Q38W81|IF2_LACSS Translation initiation factor IF-2 OS=Lactobacillus sakei subsp.
sakei (strain 23K) GN=infB PE=3 SV=1
Length = 937
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 6/137 (4%)
Query: 12 EDSKSATAHNENPTK---EHHQPSNAELMASAKCVAEAAKATFSKESDKVDKAKVAGAAE 68
E + A+ PT+ +++PSN + A+ + + T +K+ + ++
Sbjct: 189 EKKRREQANRPRPTRNNASNNRPSNGKPTNGARPTTNSPRPTVTKDGRPLGSSR---PNN 245
Query: 69 NLVAAGSKYGNLEENKYVDKAKDYLHQYHSSHSTAQTDTSGHSAQGGHDSSSVPSGGGGD 128
N A + N N Q +T S ++++S P G D
Sbjct: 246 NNSARPNTTNNRPTNSRPATTPSRPVSAQEMQQKMQANTVSASKPASNNTASKPKNFGPD 305
Query: 129 EKSGGGYGDYLKTAQGF 145
+K GGGY Y + Q F
Sbjct: 306 KKRGGGYNSYGNSQQRF 322
>sp|A5DSD3|CTU2_LODEL Cytoplasmic tRNA 2-thiolation protein 2 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=NCS2 PE=3 SV=1
Length = 448
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 87 DKAKDYLHQYHSSHSTAQTDTSGHSAQGGHDSSSVPSGGGGD 128
D+ +DYLHQY +SH T SG + + +G GGD
Sbjct: 378 DEERDYLHQYLTSH-TDTISKSGEHVNLCYGCITAINGAGGD 418
>sp|Q9LVD3|PP434_ARATH Pentatricopeptide repeat-containing protein At5g57250,
mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2
SV=2
Length = 971
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 88 KAKDYLHQYHSSHSTAQT-DTSGHSAQGGHDSSSVPS 123
K KDY+H +HS HST + TSG Q SV S
Sbjct: 931 KKKDYVHDFHSLHSTVSSLCTSGKLEQANEFVMSVLS 967
>sp|Q1LV17|I2BP1_DANRE Interferon regulatory factor 2-binding protein 1 OS=Danio rerio
GN=irf2bp1 PE=2 SV=1
Length = 605
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 107 TSGHSAQGGHDSSSVPSGGGGDEKSGGGYGD 137
+SGHSA G +S+ PS GGG + G+
Sbjct: 459 SSGHSANAGRQNSTSPSPGGGQRRLASRNGE 489
>sp|A2EI35|SEY11_TRIVA Protein SEY1 homolog 1 OS=Trichomonas vaginalis GN=TVAG_273580 PE=3
SV=1
Length = 804
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 23 NPTKEHHQPSNAELMASAKCVAEAAKATFSKESDKVDKAKVAGAAENLVAAGSKY-GNLE 81
N KE + PS +++ KC E AKA + + +KV K + A+ V G K+ N E
Sbjct: 266 NENKELNIPSQKLMLSRFKC-EENAKAAYDQFKEKVTKTILEPMADESVNLGDKFKSNAE 324
Query: 82 E 82
E
Sbjct: 325 E 325
>sp|Q8CP76|EBH_STAES Extracellular matrix-binding protein ebh OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=ebh PE=4 SV=1
Length = 9439
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 1 MDSLFSKLQNKEDSKSATAH-NENPTKE---HHQPSNAELMASAKCVAEAAKATFSKESD 56
M +L +QNKED K ++A+ N +PTK NAE + +A E KAT +
Sbjct: 4938 MSNLRDGIQNKEDIKRSSAYINADPTKVTAYDQALQNAENIINATPNVELNKATIEQALS 4997
Query: 57 KVDKAK 62
+V +A+
Sbjct: 4998 RVQQAQ 5003
>sp|Q5HPA2|EBH_STAEQ Extracellular matrix-binding protein ebh OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=ebh PE=4 SV=2
Length = 9439
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 1 MDSLFSKLQNKEDSKSATAH-NENPTKE---HHQPSNAELMASAKCVAEAAKATFSKESD 56
M +L +QNKED K ++A+ N +PTK NAE + +A E KAT +
Sbjct: 4938 MSNLRDGIQNKEDIKRSSAYINADPTKVTAYDQALQNAENIINATPNVELNKATIEQALS 4997
Query: 57 KVDKAK 62
+V +A+
Sbjct: 4998 RVQQAQ 5003
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.301 0.119 0.326
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,191,752
Number of Sequences: 539616
Number of extensions: 2264919
Number of successful extensions: 10597
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 148
Number of HSP's that attempted gapping in prelim test: 9818
Number of HSP's gapped (non-prelim): 852
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)