Query 032043
Match_columns 148
No_of_seqs 28 out of 30
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 08:49:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03188 histidine_hisI phosp 42.2 52 0.0011 23.8 4.1 37 33-71 21-63 (84)
2 PF08855 DUF1825: Domain of un 34.7 47 0.001 25.6 3.0 35 63-97 17-54 (108)
3 PF11753 DUF3310: Protein of u 34.6 64 0.0014 21.6 3.4 34 61-94 26-59 (60)
4 PRK00400 hisE phosphoribosyl-A 34.0 57 0.0012 24.5 3.4 37 33-71 25-67 (105)
5 PRK02759 bifunctional phosphor 26.9 79 0.0017 26.5 3.3 37 33-71 136-178 (203)
6 TIGR03171 soxL2 Rieske iron-su 26.1 38 0.00082 30.4 1.4 22 78-99 33-54 (321)
7 COG5223 Uncharacterized conser 24.0 45 0.00098 28.9 1.5 21 75-95 24-45 (240)
8 PF06345 Drf_DAD: DRF Autoregu 22.5 27 0.00059 18.8 -0.1 10 1-10 3-12 (15)
9 TIGR03745 conj_TIGR03745 integ 22.0 60 0.0013 25.0 1.6 18 130-147 23-40 (104)
10 COG4699 Uncharacterized protei 20.8 65 0.0014 25.5 1.6 20 79-98 66-85 (120)
11 PF14013 MT0933_antitox: MT093 20.5 1.2E+02 0.0026 20.0 2.6 24 47-72 5-28 (51)
No 1
>TIGR03188 histidine_hisI phosphoribosyl-ATP pyrophosphohydrolase. This enzyme, phosphoribosyl-ATP pyrophosphohydrolase, catalyses the second step in the histidine biosynthesis pathway. It often occurs as a fusion protein. This model a somewhat narrower scope than Pfam model pfam01503, as some paralogs that appear to be functionally distinct are excluded from this model.
Probab=42.19 E-value=52 Score=23.77 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=26.0
Q ss_pred hHHHHHh------HHHHHHHHHHhhccccccchhhHHhhhHHHHH
Q 032043 33 NAELMAS------AKCVAEAAKATFSKESDKVDKAKVAGAAENLV 71 (148)
Q Consensus 33 s~eLmaS------aKvvaeAAqs~~~~es~kvDK~KVAgAAaDlL 71 (148)
+..|++. -||.-||+....--.. =|+..|+.-++|||
T Consensus 21 T~~L~~~G~~ki~kKvgEEa~E~iiAa~~--~d~~~~~~E~ADLl 63 (84)
T TIGR03188 21 TARLFAKGLDKILKKVGEEAVEVVIAAKN--GDKEELVYEAADLL 63 (84)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 5777776 3777777766554432 36778999999987
No 2
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=34.70 E-value=47 Score=25.55 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=26.9
Q ss_pred HhhhHHHHHHhhhhhcccc--ch-hhHHHHHHHHHHhh
Q 032043 63 VAGAAENLVAAGSKYGNLE--EN-KYVDKAKDYLHQYH 97 (148)
Q Consensus 63 VAgAAaDlL~Aa~~YGKLd--ek-qYvdKAe~YL~~y~ 97 (148)
+-.---+|..-.++||++| +| .|||+-+.-+-+|.
T Consensus 17 if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~Lidkqk 54 (108)
T PF08855_consen 17 IFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQK 54 (108)
T ss_pred HHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 3344456777889999999 33 99999998888775
No 3
>PF11753 DUF3310: Protein of unknwon function (DUF3310); InterPro: IPR021739 This entry is represented by Bacteriophage T7, Gp1.7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=34.60 E-value=64 Score=21.63 Aligned_cols=34 Identities=21% Similarity=0.072 Sum_probs=29.3
Q ss_pred hHHhhhHHHHHHhhhhhccccchhhHHHHHHHHH
Q 032043 61 AKVAGAAENLVAAGSKYGNLEENKYVDKAKDYLH 94 (148)
Q Consensus 61 ~KVAgAAaDlL~Aa~~YGKLdekqYvdKAe~YL~ 94 (148)
..++-.-++++--+.++|+=+.-+-|+||..||.
T Consensus 26 ~~~~f~~gnaiKY~~R~~~K~~~eDl~KA~~Yl~ 59 (60)
T PF11753_consen 26 QFLGFCLGNAIKYLWRAGKKNGIEDLKKAKWYLD 59 (60)
T ss_pred hhhhHHHHHHHHHHHHHcccCcHHHHHHHHHHHc
Confidence 4567778899999999998866699999999985
No 4
>PRK00400 hisE phosphoribosyl-ATP pyrophosphatase; Validated
Probab=34.03 E-value=57 Score=24.50 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=25.6
Q ss_pred hHHHHHhH------HHHHHHHHHhhccccccchhhHHhhhHHHHH
Q 032043 33 NAELMASA------KCVAEAAKATFSKESDKVDKAKVAGAAENLV 71 (148)
Q Consensus 33 s~eLmaSa------KvvaeAAqs~~~~es~kvDK~KVAgAAaDlL 71 (148)
+..|++.+ ||.-||+....--. .=|+..|+.-+||||
T Consensus 25 T~~L~~~G~~ki~kKlgEEa~E~i~A~~--~~d~~~~i~E~ADLl 67 (105)
T PRK00400 25 TAKLLDKGLDKILKKVGEEATEVVIAAK--DGDREELVYEIADLL 67 (105)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Confidence 56777643 77777776644433 246888999999987
No 5
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=26.88 E-value=79 Score=26.53 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=24.3
Q ss_pred hHHHHHh------HHHHHHHHHHhhccccccchhhHHhhhHHHHH
Q 032043 33 NAELMAS------AKCVAEAAKATFSKESDKVDKAKVAGAAENLV 71 (148)
Q Consensus 33 s~eLmaS------aKvvaeAAqs~~~~es~kvDK~KVAgAAaDlL 71 (148)
+..|+.. -||.-||+..++--+. =|+..|+.-+||||
T Consensus 136 T~~L~~~G~~kI~kKvgEEA~E~iiAak~--~d~~~li~E~ADLl 178 (203)
T PRK02759 136 TAKLFASGTKRIAQKVGEEAVEVVLAAKN--NDKEELINEAADLL 178 (203)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 6677765 3666666665444332 36778888888886
No 6
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=26.13 E-value=38 Score=30.35 Aligned_cols=22 Identities=27% Similarity=0.691 Sum_probs=18.8
Q ss_pred ccccchhhHHHHHHHHHHhhcC
Q 032043 78 GNLEENKYVDKAKDYLHQYHSS 99 (148)
Q Consensus 78 GKLdekqYvdKAe~YL~~y~s~ 99 (148)
-|+|++.+|+|-||||-.|-..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~ 54 (321)
T TIGR03171 33 TKFDSREFVNKGEDYLFNYVNK 54 (321)
T ss_pred ccccHHHHHhhhhHHHhhhhhc
Confidence 3678889999999999999853
No 7
>COG5223 Uncharacterized conserved protein [Function unknown]
Probab=24.03 E-value=45 Score=28.87 Aligned_cols=21 Identities=43% Similarity=0.789 Sum_probs=16.6
Q ss_pred hhhccccch-hhHHHHHHHHHH
Q 032043 75 SKYGNLEEN-KYVDKAKDYLHQ 95 (148)
Q Consensus 75 ~~YGKLdek-qYvdKAe~YL~~ 95 (148)
.+||+|+.+ .||..|.+|=.+
T Consensus 24 rkyG~LEK~KDyvkRaqd~~~k 45 (240)
T COG5223 24 RKYGKLEKKKDYVKRAQDINKK 45 (240)
T ss_pred hhhhhHHHHHHHHHHHHHHHHh
Confidence 689999966 899888876443
No 8
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=22.52 E-value=27 Score=18.82 Aligned_cols=10 Identities=60% Similarity=0.806 Sum_probs=7.9
Q ss_pred Cchhhhhhhc
Q 032043 1 MDSLFSKLQN 10 (148)
Q Consensus 1 ~~~~~~~~~~ 10 (148)
||||...||.
T Consensus 3 mdsllealqt 12 (15)
T PF06345_consen 3 MDSLLEALQT 12 (15)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7888888874
No 9
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=22.01 E-value=60 Score=24.95 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=13.0
Q ss_pred CCCCCcchHHHhhhhhhc
Q 032043 130 KSGGGYGDYLKTAQGFLN 147 (148)
Q Consensus 130 ~sggg~Gg~~KmAqGF~K 147 (148)
+|+|+++|++-..|||++
T Consensus 23 PS~G~g~g~~~tik~Y~~ 40 (104)
T TIGR03745 23 PSRGGGSGIMQTIKNYGY 40 (104)
T ss_pred CCCCCCcCHHHHHHHHHH
Confidence 355556779998888874
No 10
>COG4699 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.77 E-value=65 Score=25.51 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=17.0
Q ss_pred cccchhhHHHHHHHHHHhhc
Q 032043 79 NLEENKYVDKAKDYLHQYHS 98 (148)
Q Consensus 79 KLdekqYvdKAe~YL~~y~s 98 (148)
+=+|..|-|-.++||++|||
T Consensus 66 n~eD~~wCEDCeedLQ~fhs 85 (120)
T COG4699 66 NNEDMEWCEDCEEDLQQFHS 85 (120)
T ss_pred cchhhhHHHHHHHHHHHHHH
Confidence 33456899999999999997
No 11
>PF14013 MT0933_antitox: MT0933-like antitoxin protein
Probab=20.45 E-value=1.2e+02 Score=20.04 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=12.5
Q ss_pred HHHhhccccccchhhHHhhhHHHHHH
Q 032043 47 AKATFSKESDKVDKAKVAGAAENLVA 72 (148)
Q Consensus 47 Aqs~~~~es~kvDK~KVAgAAaDlL~ 72 (148)
|+..+++.+++|| .+-.-|+|.++
T Consensus 5 ak~~~~~~~dk~~--~~iDKA~d~vd 28 (51)
T PF14013_consen 5 AKDLASKNPDKID--QGIDKAGDFVD 28 (51)
T ss_pred HHHHHHHChHHHH--HHHHHHHHHHH
Confidence 4455555556665 33444555555
Done!