Query 032043
Match_columns 148
No_of_seqs 28 out of 30
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 14:08:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6h_B Talin; protein-protein 42.9 15 0.00052 21.7 2.1 16 34-49 6-21 (31)
2 2i7u_A Four-alpha-helix bundle 35.4 13 0.00045 25.1 1.1 13 131-143 30-42 (62)
3 3rf3_A Vinculin, metavinculin; 35.0 79 0.0027 25.5 5.8 66 33-98 78-150 (258)
4 1yvw_A PRA-PH, phosphoribosyl- 33.8 33 0.0011 25.3 3.1 37 33-71 25-67 (115)
5 2a7w_A PRA-PH, phosphoribosyl- 33.6 48 0.0016 24.5 4.0 38 33-72 26-69 (116)
6 2e2c_A Ubiquitin conjugating e 29.3 36 0.0012 24.8 2.7 26 72-99 130-155 (156)
7 2fft_A Thylakoid soluble phosp 29.0 45 0.0015 23.9 3.1 17 81-97 11-27 (84)
8 2v6y_A AAA family ATPase, P60 24.4 49 0.0017 22.1 2.4 31 66-97 36-75 (83)
9 1dow_A Alpha-catenin; four-hel 23.6 1.5E+02 0.0052 23.2 5.5 66 33-98 38-110 (205)
10 1yxb_A PRA-PH, phosphoribosyl- 23.2 55 0.0019 23.5 2.6 29 41-71 41-69 (98)
11 2yy9_A Zinc finger and BTB dom 21.5 44 0.0015 22.9 1.8 39 67-108 92-130 (135)
No 1
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=42.95 E-value=15 Score=21.73 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=12.2
Q ss_pred HHHHHhHHHHHHHHHH
Q 032043 34 AELMASAKCVAEAAKA 49 (148)
Q Consensus 34 ~eLmaSaKvvaeAAqs 49 (148)
--|+..||.|+||..-
T Consensus 6 ~rLl~aak~vaeata~ 21 (31)
T 1u6h_B 6 RKLLSAAKILADATAK 21 (31)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3588888888888654
No 2
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=35.43 E-value=13 Score=25.15 Aligned_cols=13 Identities=38% Similarity=0.831 Sum_probs=8.3
Q ss_pred CCCCcchHHHhhh
Q 032043 131 SGGGYGDYLKTAQ 143 (148)
Q Consensus 131 sggg~Gg~~KmAq 143 (148)
+|||+|-++|+..
T Consensus 30 ggggggelmklce 42 (62)
T 2i7u_A 30 GGGGGGELMKLCE 42 (62)
T ss_dssp SCSSSCHHHHHHH
T ss_pred CCCchHHHHHHHH
Confidence 4556677777653
No 3
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=35.00 E-value=79 Score=25.48 Aligned_cols=66 Identities=9% Similarity=0.046 Sum_probs=50.9
Q ss_pred hHHHHHhHHHHHHHHHHhhccccccchhhHHhhhHHHHHHhhhhhccccch-------hhHHHHHHHHHHhhc
Q 032043 33 NAELMASAKCVAEAAKATFSKESDKVDKAKVAGAAENLVAAGSKYGNLEEN-------KYVDKAKDYLHQYHS 98 (148)
Q Consensus 33 s~eLmaSaKvvaeAAqs~~~~es~kvDK~KVAgAAaDlL~Aa~~YGKLdek-------qYvdKAe~YL~~y~s 98 (148)
-.++-.+++.+..||+.-..+-....++.++-.||-.||.+..+-==|.|- .-+++.++||.....
T Consensus 78 ~~~v~~ag~~l~~aa~~~~~dP~s~~~R~~lV~aAR~lLs~vtrlLllaD~~dVr~il~~~~~v~~~l~~l~~ 150 (258)
T 3rf3_A 78 FIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEV 150 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667788888888765555457889999999999999998776555555 778888999987764
No 4
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=33.82 E-value=33 Score=25.31 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=26.7
Q ss_pred hHHHHHh------HHHHHHHHHHhhccccccchhhHHhhhHHHHH
Q 032043 33 NAELMAS------AKCVAEAAKATFSKESDKVDKAKVAGAAENLV 71 (148)
Q Consensus 33 s~eLmaS------aKvvaeAAqs~~~~es~kvDK~KVAgAAaDlL 71 (148)
+.-|++. -||.-||+...+--+. -|+..|+.-+||||
T Consensus 25 T~~L~~kG~~kI~kKvgEEA~E~iiAak~--~d~~~l~~E~ADLl 67 (115)
T 1yvw_A 25 TNYLFSKGEDKILKKIGEECAEVIIACKN--NDKEEVVKEMVDVF 67 (115)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHCcHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Confidence 6777766 5777777766554432 47889999999986
No 5
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=33.62 E-value=48 Score=24.46 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=26.4
Q ss_pred hHHHHHh------HHHHHHHHHHhhccccccchhhHHhhhHHHHHH
Q 032043 33 NAELMAS------AKCVAEAAKATFSKESDKVDKAKVAGAAENLVA 72 (148)
Q Consensus 33 s~eLmaS------aKvvaeAAqs~~~~es~kvDK~KVAgAAaDlL~ 72 (148)
+.-|++. -||.-||+...+--+. =|+..|+.-+||||=
T Consensus 26 T~~L~~kG~~kI~kKvgEEA~E~iiAak~--~d~~el~~E~ADLlY 69 (116)
T 2a7w_A 26 VASLFHKGEDAILKKVAEEAAETLMASKD--KDKLHLVREVADLWF 69 (116)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 6677764 4666777766554442 478899999999863
No 6
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=29.25 E-value=36 Score=24.76 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=20.8
Q ss_pred HhhhhhccccchhhHHHHHHHHHHhhcC
Q 032043 72 AAGSKYGNLEENKYVDKAKDYLHQYHSS 99 (148)
Q Consensus 72 ~Aa~~YGKLdekqYvdKAe~YL~~y~s~ 99 (148)
+||..| + |...|..+|..|.++|.+.
T Consensus 130 ~aa~~~-~-d~~~y~~~~~~~~~~~~~~ 155 (156)
T 2e2c_A 130 QAADMW-S-NQTEYKKVLHEKYKTAQSD 155 (156)
T ss_dssp HHHHHT-T-CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHh-c-CHHHHHHHHHHHHHHhccC
Confidence 456778 5 6669999999999999754
No 7
>2fft_A Thylakoid soluble phosphoprotein; TSP9, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Spinacia oleracea} SCOP: g.88.1.1
Probab=29.02 E-value=45 Score=23.95 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=9.7
Q ss_pred cchhhHHHHHHHHHHhh
Q 032043 81 EENKYVDKAKDYLHQYH 97 (148)
Q Consensus 81 dekqYvdKAe~YL~~y~ 97 (148)
+||..+|---+.|.+-.
T Consensus 11 eEKgl~D~i~G~i~K~d 27 (84)
T 2fft_A 11 QEKSFVDWLLGKITKED 27 (84)
T ss_dssp CCCSHHHHHHHHHSCCC
T ss_pred ccccHHHHHhhhhhhhh
Confidence 45566666666665433
No 8
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=24.36 E-value=49 Score=22.13 Aligned_cols=31 Identities=10% Similarity=-0.031 Sum_probs=18.9
Q ss_pred hHHHHHHhhhhhccccch---------hhHHHHHHHHHHhh
Q 032043 66 AAENLVAAGSKYGNLEEN---------KYVDKAKDYLHQYH 97 (148)
Q Consensus 66 AAaDlL~Aa~~YGKLdek---------qYvdKAe~YL~~y~ 97 (148)
-|.++|--+.+|.+-+.. +|++.||. |+.+-
T Consensus 36 ~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~-Lk~~l 75 (83)
T 2v6y_A 36 KAIEVLSQIIVLYPESVARTAYEQMINEYKKRISY-LEKVL 75 (83)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHH-HTTCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHc
Confidence 456777777888853332 67777664 34443
No 9
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=23.63 E-value=1.5e+02 Score=23.25 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=51.6
Q ss_pred hHHHHHhHHHHHHHHHHhhccccccchhhHHhhhHHHHHHhhhhhccccch-------hhHHHHHHHHHHhhc
Q 032043 33 NAELMASAKCVAEAAKATFSKESDKVDKAKVAGAAENLVAAGSKYGNLEEN-------KYVDKAKDYLHQYHS 98 (148)
Q Consensus 33 s~eLmaSaKvvaeAAqs~~~~es~kvDK~KVAgAAaDlL~Aa~~YGKLdek-------qYvdKAe~YL~~y~s 98 (148)
-.|+-.+++.+..|++.-..+.....++.++-.||-.||.+..+-==|-|- +=+++.++||..-..
T Consensus 38 ~~~v~~ag~~l~~a~~~~~~dP~s~~~R~~lV~aaR~lLs~vtrlLllaD~~~Vrkil~~~~~v~~~L~~le~ 110 (205)
T 1dow_A 38 VEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRN 110 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777888999998885555558899999999999999999876655555 556777888877654
No 10
>1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.60A {Streptomyces coelicolor} SCOP: a.204.1.4
Probab=23.22 E-value=55 Score=23.48 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhccccccchhhHHhhhHHHHH
Q 032043 41 KCVAEAAKATFSKESDKVDKAKVAGAAENLV 71 (148)
Q Consensus 41 KvvaeAAqs~~~~es~kvDK~KVAgAAaDlL 71 (148)
||.-||+...+--+. =|+.+|+.-+||||
T Consensus 41 KvgEEA~E~iiAak~--~d~~~l~~E~ADLl 69 (98)
T 1yxb_A 41 KVVEEAAEVWMAAEY--EGKDAAAEEISQLL 69 (98)
T ss_dssp HHHHHHHHHHHHHHH--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCHHHHHHHHHHHH
Confidence 777777666544432 47888999999987
No 11
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=21.53 E-value=44 Score=22.93 Aligned_cols=39 Identities=10% Similarity=0.144 Sum_probs=18.2
Q ss_pred HHHHHHhhhhhccccchhhHHHHHHHHHHhhcCCCCCCCCCC
Q 032043 67 AENLVAAGSKYGNLEENKYVDKAKDYLHQYHSSHSTAQTDTS 108 (148)
Q Consensus 67 AaDlL~Aa~~YGKLdekqYvdKAe~YL~~y~s~~~~~~t~~s 108 (148)
+.+||.+|..|+= ..-++..++||.+.-....+..|.++
T Consensus 92 v~~ll~~A~~l~i---~~L~~~C~~~l~~~l~~~~~~~p~~s 130 (135)
T 2yy9_A 92 RDQVLLAAKELRV---PEAVELCQSFQPQTSVGQAQSGLGQS 130 (135)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHCCC--------------
T ss_pred HHHHHHHHHHhCc---HHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 5688888877753 34667788888877655544444333
Done!