Your job contains 1 sequence.
>032044
MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP
LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE
METALESLNGVELEGRAMRVSLAQGRRS
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032044
(148 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 571 2.3e-55 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 216 6.8e-30 2
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 315 3.1e-28 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 302 7.3e-27 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 292 8.4e-26 1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 279 2.0e-24 1
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi... 243 1.3e-20 1
TAIR|locus:2200975 - symbol:AT1G01080 species:3702 "Arabi... 220 3.6e-18 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 213 2.0e-17 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 172 6.1e-17 2
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 208 6.7e-17 1
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 213 9.7e-17 1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 200 4.7e-16 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 204 6.6e-16 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 204 6.6e-16 1
TAIR|locus:2122368 - symbol:AT4G09040 species:3702 "Arabi... 197 1.1e-15 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 196 1.3e-15 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 196 1.3e-15 1
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei... 196 1.3e-15 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 200 1.9e-15 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 194 2.0e-15 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 194 2.0e-15 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 198 2.3e-15 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 198 2.4e-15 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 198 2.4e-15 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 198 2.6e-15 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 198 2.7e-15 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 198 2.8e-15 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 198 2.8e-15 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 198 2.8e-15 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 198 2.8e-15 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 198 2.8e-15 1
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 201 3.2e-15 1
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido... 192 3.3e-15 1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin... 192 4.8e-15 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 190 5.4e-15 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 193 6.3e-15 1
UNIPROTKB|Q86U06 - symbol:RBM23 "Probable RNA-binding pro... 196 6.5e-15 1
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"... 196 6.5e-15 1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 194 6.7e-15 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 194 6.9e-15 1
UNIPROTKB|I3LPP8 - symbol:RBM23 "Uncharacterized protein"... 195 7.6e-15 1
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 194 7.7e-15 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 196 7.9e-15 1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 194 9.8e-15 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 194 1.3e-14 1
POMBASE|SPAC328.05 - symbol:SPAC328.05 "RNA-binding prote... 160 1.5e-14 2
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 194 1.6e-14 1
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 194 1.6e-14 1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 194 1.6e-14 1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 194 1.6e-14 1
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 194 1.6e-14 1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 194 1.6e-14 1
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 194 1.6e-14 1
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 194 1.6e-14 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 185 1.8e-14 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 190 1.9e-14 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 189 2.7e-14 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 183 3.0e-14 1
ASPGD|ASPL0000078272 - symbol:AN4330 species:162425 "Emer... 136 3.1e-14 2
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 183 3.1e-14 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 191 4.8e-14 1
UNIPROTKB|F1MY46 - symbol:RBM23 "Uncharacterized protein"... 188 5.5e-14 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 187 5.9e-14 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 188 6.5e-14 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 189 7.5e-14 1
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 188 7.5e-14 1
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 189 7.5e-14 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 179 7.9e-14 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 188 8.2e-14 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 187 9.1e-14 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 188 1.0e-13 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 178 1.0e-13 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 178 1.0e-13 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 188 1.0e-13 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 185 1.2e-13 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 186 1.3e-13 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 187 1.3e-13 1
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 186 1.5e-13 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 186 1.6e-13 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 186 1.6e-13 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 186 1.6e-13 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 186 1.6e-13 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 176 1.6e-13 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 176 1.6e-13 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 176 1.6e-13 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 184 1.7e-13 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 186 1.7e-13 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 186 1.9e-13 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 183 2.0e-13 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 184 2.7e-13 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 181 2.8e-13 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 183 2.9e-13 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 183 3.1e-13 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 183 3.2e-13 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 179 3.3e-13 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 179 3.4e-13 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 179 3.4e-13 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 179 3.4e-13 1
UNIPROTKB|Q3AF33 - symbol:CHY_0389 "RNA-binding protein" ... 173 3.4e-13 1
WARNING: Descriptions of 1378 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 108/142 (76%), Positives = 130/142 (91%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET 65
VLY+R+TG+SRGFAFVTMS VEDCN +I+NLDG EYLGR L+VNF+DKPKP K PLY ET
Sbjct: 116 VLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPET 175
Query: 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 125
+ KLFVGNLSW+VT+ESL AF+E G+VVGARV++DG++GRSRGYGFVCYS+KAEMETAL
Sbjct: 176 EHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
Query: 126 ESLNGVELEGRAMRVSLAQGRR 147
ESL+G ELEGRA+RV+LAQG++
Sbjct: 236 ESLDGFELEGRAIRVNLAQGKK 257
Score = 146 (56.5 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A + KL+ GNL ++V + +L Q Q++ N VLY+ ++G+SRG+ FV S +
Sbjct: 81 AAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCN 140
Query: 123 TALESLNGVELEGRAMRVSLA 143
+++L+G E GRA++V+ A
Sbjct: 141 IIIDNLDGTEYLGRALKVNFA 161
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 216 (81.1 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 40/79 (50%), Positives = 58/79 (73%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
+++VGNLSW V +L F E G VV ARV+YD +SGRS+G+GFV Y + E++ A++S
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 128 LNGVELEGRAMRVSLAQGR 146
L+G +L+GR +RVS A+ R
Sbjct: 265 LDGADLDGRQIRVSEAEAR 283
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 42/91 (46%), Positives = 59/91 (64%)
Query: 51 FSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 110
F+D PK ++ D KLFVGNL ++V + L Q F+ GNV V+YD +GRSRG+
Sbjct: 76 FADVAPPKEQSFS-ADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGF 134
Query: 111 GFVCYSTKAEMETALESLNGVELEGRAMRVS 141
GFV S+ +E+E A + NG EL+GR +RV+
Sbjct: 135 GFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165
Score = 130 (50.8 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58
V+YD+ TGRSRGF FVTMS+V + A + +G E GR LRVN + P PK
Sbjct: 122 VIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN-AGPPPPK 172
Score = 113 (44.8 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58
V+YDR++GRS+GF FVT + ++ I++LDG + GR +RV+ ++ P+
Sbjct: 235 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPR 286
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 66/144 (45%), Positives = 95/144 (65%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS----DKPKPKLPLY 62
V+Y+RET +SRGF FVTMS+V++ +E + + GR+L VN + +P+ + P
Sbjct: 181 VIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPE-RAPRV 239
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
E F+++VGNL W V L Q F E+G VV ARV+YD E+GRSRG+GFV S E+
Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Query: 123 TALESLNGVELEGRAMRVSLAQGR 146
A+ +L+G LEGRA+RV++A+ R
Sbjct: 300 EAISALDGQNLEGRAIRVNVAEER 323
Score = 171 (65.3 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLFVGNL++ V +++L F++ G V A V+Y+ E+ +SRG+GFV S+ E ETA+E
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 128 LNGVELEGRAMRVSLAQGRRS 148
N +L GR + V+ A R S
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGS 231
Score = 151 (58.2 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58
V+YDRETGRSRGF FVTMS V++ N I LDG+ GR +RVN +++ P+
Sbjct: 275 VVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 64/144 (44%), Positives = 96/144 (66%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS----DKPKPKLPLY 62
V+Y+R+T +SRGF FVTMSTVE+ +E + E GR L VN + +P+ + +Y
Sbjct: 144 VIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVY 203
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
+ F+++VGNL W V + L + F E+G VV ARV+ D E+GRSRG+GFV S + E+
Sbjct: 204 -DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Query: 123 TALESLNGVELEGRAMRVSLAQGR 146
A+ +L+G LEGRA++V++A+ R
Sbjct: 263 VAIAALDGQNLEGRAIKVNVAEER 286
Score = 163 (62.4 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLFVGNL + V +++L F++ G V + V+Y+ ++ +SRG+GFV ST E E A+E
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 128 LNGVELEGRAMRVSLAQGRRS 148
N E+ GR + V+ A R S
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGS 194
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 56/152 (36%), Positives = 98/152 (64%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK--------PK 58
++YD+ T RSRGF FVTM ++E+ ++ + + GR ++VNF + P+ K
Sbjct: 147 IVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTK 206
Query: 59 LP----LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVC 114
+ Y ++ K++ GNL W++T++ L AF + V+GA+V+Y+ +GRSRG+GF+
Sbjct: 207 IRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFIS 266
Query: 115 YSTKAEMETALESLNGVELEGRAMRVSLAQGR 146
+ + +++AL ++NGVE+EGRA+R++LA R
Sbjct: 267 FESAENVQSALATMNGVEVEGRALRLNLASER 298
Score = 154 (59.3 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
+L+VGNL +++T+ L+Q F E G VV +++YD + RSRG+GFV + E + A++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 128 LNGVELEGRAMRVSLAQ 144
N ++ GR ++V+ +
Sbjct: 177 FNSSQIGGRTVKVNFPE 193
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 61/152 (40%), Positives = 96/152 (63%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP---KPK 58
+ K+ V+YD+ +GRSR F F TM +VED NAV+E L+G GR ++VN ++KP P
Sbjct: 102 VEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPD 161
Query: 59 LPL-------YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
L + + ++ +K++VGNL+ +VT E L F E G VV A+V + +S G+G
Sbjct: 162 LSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFG 221
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLA 143
FV +S++ ++E A+ +LN LEG+ +RV+ A
Sbjct: 222 FVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 154 (59.3 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 32/92 (34%), Positives = 55/92 (59%)
Query: 53 DKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 112
+KP P +E ++++GN+ +VT E LT+ +E+G V +V+YD SGRSR +GF
Sbjct: 63 EKPAALDPS-SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121
Query: 113 VCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
+ + +E LNG +EGR ++V++ +
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITE 153
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 60/150 (40%), Positives = 86/150 (57%)
Query: 11 RETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS---DKPKPK----LPLYA 63
++ G++RGFAFVTM++ E+ A I+ D + GRI+ V+F+ KP PK LP A
Sbjct: 129 QKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPA 188
Query: 64 --ETDFKLFVGNLSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAE 120
+T KL+V NL+W + L + F N V ARV++ GRS GYGFV ++T+ E
Sbjct: 189 PGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREE 248
Query: 121 METALESLNGVELEGR--AMRVSLAQGRRS 148
E A+ LNG E+ GR ++ SL S
Sbjct: 249 AENAITKLNGKEIMGRPITLKFSLRSASES 278
Score = 120 (47.3 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLFV NL WS++ +++ F + G V ++ + G++RG+ FV ++ E + A++
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ-KDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 128 LNGVELEGRAMRVSLAQ 144
+ ++ GR + VS A+
Sbjct: 155 FDTFQVSGRIISVSFAR 171
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 55/158 (34%), Positives = 87/158 (55%)
Query: 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS-D------ 53
++S V + +TG SRG +VTM ++ I +LDG E GR +RV +S D
Sbjct: 134 VISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTR 193
Query: 54 -KPK-----PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRS 107
P+ PK L E+ K++VGNL W + L F ++G +V RVL+D ++GR+
Sbjct: 194 RNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRN 253
Query: 108 RGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 145
R + F+ +++ E + AL S NG + EGR R+ + +G
Sbjct: 254 RVFAFLSFTSGEERDAAL-SFNGTQYEGR--RIIVREG 288
Score = 110 (43.8 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLY-DGESGRSRGYGFVCYSTKAEMETALE 126
+L+V N+ S L FQ +G V+ V+ + ++G SRG G+V + + A+
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIA 168
Query: 127 SLNGVELEGRAMRV 140
SL+G E+ GR MRV
Sbjct: 169 SLDGTEVGGREMRV 182
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 37/86 (43%), Positives = 62/86 (72%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A+ +++ FVG L W+ +SL AF +YG+V+ ++++ D E+GRSRG+GFV +++ M
Sbjct: 2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61
Query: 123 TALESLNGVELEGRAMRVSLAQGRRS 148
A+E++NG +L+GR + V+ AQ RRS
Sbjct: 62 QAIEAMNGQDLDGRNITVNEAQSRRS 87
Score = 104 (41.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50
++ DRETGRSRGF FVT ++ E IE ++G++ GR + VN
Sbjct: 37 IITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVN 80
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 172 (65.6 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 33/78 (42%), Positives = 54/78 (69%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
LFVGNLSW+VT E L Q F+++G + AR++ + ++GRSRG+G+V ++ A+ A E++
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERDTGRSRGFGYVEFTNAADAAKAYEAM 337
Query: 129 NGVELEGRAMRVSLAQGR 146
E++GR + + A GR
Sbjct: 338 KEHEIDGRKINLDYATGR 355
Score = 164 (62.8 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
Identities = 38/97 (39%), Positives = 56/97 (57%)
Query: 50 NFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRG 109
+F D+ P E+D LFVGNL +S +S+ + F GNV+G R+ D ESGR +G
Sbjct: 374 SFGDQTSP------ESD-TLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKG 426
Query: 110 YGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146
+G+V YS+ E A L G E++GR +R+ + R
Sbjct: 427 FGYVQYSSVDEARKAYNELQGAEIDGRPIRLDFSTPR 463
Score = 76 (31.8 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD-KPKPK 58
++ +R+TGRSRGF +V + D E + E GR + ++++ +P K
Sbjct: 307 IMTERDTGRSRGFGYVEFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANK 359
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 36/86 (41%), Positives = 59/86 (68%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
+E +++ FVG L+W+ E L + F ++G+V+ ++++ D ESGRSRG+GFV + + M
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 123 TALESLNGVELEGRAMRVSLAQGRRS 148
A+E +NG EL+GR + V+ AQ R S
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSRGS 87
Score = 105 (42.0 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50
++ DRE+GRSRGF FVT + IE ++G+E GR++ VN
Sbjct: 37 IINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 213 (80.0 bits), Expect = 9.7e-17, P = 9.7e-17
Identities = 40/145 (27%), Positives = 89/145 (61%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
++ + ++ D+ ++ +AFV D N ++ L+G++ I+++N++ + +
Sbjct: 101 IANIKIMIDKNN-KNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSS-- 157
Query: 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
++ F LFVG+L+ +V E+L AF+++ + + V++D ++G SRGYGFV ++++ +
Sbjct: 158 -SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 216
Query: 122 ETALESLNGVELEGRAMRVSLAQGR 146
+ A++S+ G +L GR +R++ A R
Sbjct: 217 QNAMDSMQGQDLNGRPLRINWAAKR 241
Score = 117 (46.2 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/85 (30%), Positives = 50/85 (58%)
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+D L+VGNL ++T + L Q FQ G + +++ D ++ ++ Y FV Y + A
Sbjct: 73 SDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIA 131
Query: 125 LESLNGVELEGRAMRVSLA-QGRRS 148
L++LNG ++E ++++ A Q ++S
Sbjct: 132 LQTLNGKQIENNIVKINWAFQSQQS 156
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 34/85 (40%), Positives = 60/85 (70%)
Query: 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 123
+ +++ FVG L+W+ +L AF +YG+V+ ++++ D E+GRSRG+GFV + + M+
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 124 ALESLNGVELEGRAMRVSLAQGRRS 148
A+E +NG +L+GR++ V+ AQ R S
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSRGS 89
Score = 100 (40.3 bits), Expect = 0.00027, P = 0.00027
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50
++ DRETGRSRGF FVT + IE ++G++ GR + VN
Sbjct: 39 IINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVN 82
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 204 (76.9 bits), Expect = 6.6e-16, P = 6.6e-16
Identities = 47/151 (31%), Positives = 82/151 (54%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD-KP------KPKL 59
V+ +R TG+SRG+ +V + +E + G+E GR + ++ S KP +
Sbjct: 199 VIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRA 258
Query: 60 PLYAETDFK----LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCY 115
Y ++ LF+GNLS++ ++L F EYGNV+ RV ++ + +G+G+V +
Sbjct: 259 KQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQF 318
Query: 116 STKAEMETALESLNGVELEGRAMRVSLAQGR 146
S+ E + ALE++NG +EGR R+ + R
Sbjct: 319 SSVDEAKAALEAMNGEYIEGRPCRLDFSTPR 349
Score = 184 (69.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 35/91 (38%), Positives = 56/91 (61%)
Query: 56 KPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCY 115
K K E LFVG LSW++ L + F+ G V+GARV+ + +G+SRGYG+V +
Sbjct: 157 KSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDF 216
Query: 116 STKAEMETALESLNGVELEGRAMRVSLAQGR 146
+K+ E ALE + G E++GR + + ++ G+
Sbjct: 217 ESKSAAEKALEEMQGKEIDGRPINLDMSTGK 247
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 204 (76.9 bits), Expect = 6.6e-16, P = 6.6e-16
Identities = 47/151 (31%), Positives = 82/151 (54%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD-KP------KPKL 59
V+ +R TG+SRG+ +V + +E + G+E GR + ++ S KP +
Sbjct: 199 VIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRA 258
Query: 60 PLYAETDFK----LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCY 115
Y ++ LF+GNLS++ ++L F EYGNV+ RV ++ + +G+G+V +
Sbjct: 259 KQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQF 318
Query: 116 STKAEMETALESLNGVELEGRAMRVSLAQGR 146
S+ E + ALE++NG +EGR R+ + R
Sbjct: 319 SSVDEAKAALEAMNGEYIEGRPCRLDFSTPR 349
Score = 184 (69.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 35/91 (38%), Positives = 56/91 (61%)
Query: 56 KPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCY 115
K K E LFVG LSW++ L + F+ G V+GARV+ + +G+SRGYG+V +
Sbjct: 157 KSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDF 216
Query: 116 STKAEMETALESLNGVELEGRAMRVSLAQGR 146
+K+ E ALE + G E++GR + + ++ G+
Sbjct: 217 ESKSAAEKALEEMQGKEIDGRPINLDMSTGK 247
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 197 (74.4 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 46/133 (34%), Positives = 72/133 (54%)
Query: 15 RSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD-----FKL 69
R+RG F+ M++ E+ +++L+ EY GR L+V+++ K K ET F L
Sbjct: 132 RNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNL 191
Query: 70 FVGNLSWSVTTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
FV NL++ + L + F + GNVV V++ RS GYGFV + TK + E AL
Sbjct: 192 FVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEF 251
Query: 129 NGVELEGRAMRVS 141
G + GR +R++
Sbjct: 252 QGKDFLGRPIRLA 264
Score = 120 (47.3 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 28/102 (27%), Positives = 53/102 (51%)
Query: 46 ILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESG 105
+L + S P++ + +L N+ W+ T E + F++YG+V+ + +
Sbjct: 73 VLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKE- 131
Query: 106 RSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 147
R+RG F+ ++ E TAL+SL E EGR ++V A+ ++
Sbjct: 132 RNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKK 173
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 40/81 (49%), Positives = 52/81 (64%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLFVG LSW SL QAF +G V A V+ D E+GRSRG+GFV +S + A++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 128 LNGVELEGRAMRVSLAQGRRS 148
++G EL GR +RV+LA R S
Sbjct: 96 MDGKELNGRQIRVNLATERSS 116
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52
+++ TV+ DRETGRSRGF FV+ S + N I+ +DG+E GR +RVN +
Sbjct: 61 VTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 42/123 (34%), Positives = 69/123 (56%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 69
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +
Sbjct: 70 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 129
Query: 139 RVS 141
R +
Sbjct: 130 RTN 132
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 47/141 (33%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V ++ I L G+ LG + V S K +L A
Sbjct: 27 IISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNL 85
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + ++ D ++GRS+GYGF+ +S
Sbjct: 86 QKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 145
Query: 120 EMETALESLNGVELEGRAMRV 140
ALE LNG EL GR MRV
Sbjct: 146 CARRALEQLNGFELAGRPMRV 166
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 200 (75.5 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 47/143 (32%), Positives = 82/143 (57%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-KPKLP 60
++K V++D G + +AFV S + ++ ++ R L R ++VN++ +P + +
Sbjct: 72 VTKTKVIFD---GSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQSK 128
Query: 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE 120
+ F +FVG+LS V + L +AFQ +G+V A+V+ D + +S+GYGFV Y + E
Sbjct: 129 IDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREE 188
Query: 121 METALESLNGVELEGRAMRVSLA 143
E A+E +NG L R +R + A
Sbjct: 189 AERAIEQMNGQWLGRRTIRTNWA 211
Score = 136 (52.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 41/156 (26%), Positives = 78/156 (50%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGR-ILRVNFS-----DKP 55
+S V+ D T +S+G+ FV+ E+ IE ++G ++LGR +R N++ D+
Sbjct: 161 VSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG-QWLGRRTIRTNWATRKPGDQE 219
Query: 56 KPKL-------PLYAET---DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESG 105
KP +Y +T + ++VGN++ S+T + + Q F +G + R+
Sbjct: 220 KPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIF------ 272
Query: 106 RSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 141
+ +GY FV + K A+ +N ++ G+ +R S
Sbjct: 273 KMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCS 308
Score = 104 (41.7 bits), Expect = 0.00039, P = 0.00039
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VGNL +VT + + F + G+V +V++DG + Y FV +S + AL+++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP---YAFVEFSDHGQASQALQTM 104
Query: 129 NGVELEGRAMRVSLA 143
N L R M+V+ A
Sbjct: 105 NKRLLLDREMKVNWA 119
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 42/132 (31%), Positives = 73/132 (55%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+T + + FV A + ++GR+ +G+ ++VN++ P + F +FV
Sbjct: 41 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKK-DTSNHFHVFV 99
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
G+LS +TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A++ + G
Sbjct: 100 GDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 159
Query: 132 ELEGRAMRVSLA 143
L GR +R + A
Sbjct: 160 WLGGRQIRTNWA 171
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 42/132 (31%), Positives = 73/132 (55%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+T + + FV A + ++GR+ +G+ ++VN++ P + F +FV
Sbjct: 37 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKK-DTSNHFHVFV 95
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
G+LS +TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A++ + G
Sbjct: 96 GDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 155
Query: 132 ELEGRAMRVSLA 143
L GR +R + A
Sbjct: 156 WLGGRQIRTNWA 167
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 198 (74.8 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 43/125 (34%), Positives = 70/125 (56%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 139 RVSLA 143
R + A
Sbjct: 186 RTNWA 190
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 198 (74.8 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 43/125 (34%), Positives = 70/125 (56%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 139 RVSLA 143
R + A
Sbjct: 186 RTNWA 190
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 198 (74.8 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 43/125 (34%), Positives = 70/125 (56%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 50 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 108
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +
Sbjct: 109 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 168
Query: 139 RVSLA 143
R + A
Sbjct: 169 RTNWA 173
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 198 (74.8 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 43/125 (34%), Positives = 70/125 (56%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 50 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 108
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +
Sbjct: 109 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 168
Query: 139 RVSLA 143
R + A
Sbjct: 169 RTNWA 173
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 198 (74.8 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 43/125 (34%), Positives = 70/125 (56%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 124
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +
Sbjct: 125 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 184
Query: 139 RVSLA 143
R + A
Sbjct: 185 RTNWA 189
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 198 (74.8 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 43/125 (34%), Positives = 70/125 (56%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 139 RVSLA 143
R + A
Sbjct: 186 RTNWA 190
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 198 (74.8 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 43/125 (34%), Positives = 70/125 (56%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 139 RVSLA 143
R + A
Sbjct: 186 RTNWA 190
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 198 (74.8 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 43/125 (34%), Positives = 70/125 (56%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 139 RVSLA 143
R + A
Sbjct: 186 RTNWA 190
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 198 (74.8 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 43/125 (34%), Positives = 70/125 (56%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 139 RVSLA 143
R + A
Sbjct: 186 RTNWA 190
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 198 (74.8 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 43/125 (34%), Positives = 70/125 (56%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 139 RVSLA 143
R + A
Sbjct: 186 RTNWA 190
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 201 (75.8 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 51/147 (34%), Positives = 79/147 (53%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYL-GRILRVNFSDKPKPKLP 60
+ + TV+ D TGRSRGF F+T + N V+ YL G+I+ PK +P
Sbjct: 136 VQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVK---EHYLDGKII------DPKRAIP 186
Query: 61 L-YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
E K+FVG +S T + Q F ++G V+ A ++ D ++GR RG+GFV + ++A
Sbjct: 187 RDEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEA 246
Query: 120 EMETALESLNGVELEGRAMRVSLAQGR 146
+E AL +E+ G+ + V AQ R
Sbjct: 247 AVEAALS--RPLEILGKTIEVKKAQPR 271
Score = 130 (50.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 54 KPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV 113
+P+P+ E D K+F+G L+W T +SL + F ++G V V+ D +GRSRG+GF+
Sbjct: 98 EPEPQGTGIKE-DGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFL 156
Query: 114 CYSTKAEMETAL 125
+ + T +
Sbjct: 157 TFKDPKTVNTVM 168
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 32/81 (39%), Positives = 57/81 (70%)
Query: 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 123
+ +++ F+G L+W+ + L AF++YG++V A+V+ D SGRSRG+GF+ + K M+
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 124 ALESLNGVELEGRAMRVSLAQ 144
A+ ++NG++L+GR + V AQ
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQ 84
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 192 (72.6 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 35/81 (43%), Positives = 58/81 (71%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLF+G +++S+ +SL +AF +YG VV RV+ D E+GRSRG+GFV +++ +A+++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 128 LNGVELEGRAMRVSLAQGRRS 148
L+G +L GR ++V+ A R S
Sbjct: 101 LDGRDLHGRVVKVNYANDRTS 121
Score = 133 (51.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 24/47 (51%), Positives = 37/47 (78%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53
V+ DRETGRSRGF FVT ++ E ++ I+ LDGR+ GR+++VN+++
Sbjct: 71 VILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 117
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 44/110 (40%), Positives = 61/110 (55%)
Query: 43 LGRILRVNFSDKPK-PKLPLYAETDF---KLFVGNLSWSVTTESLTQAFQEYGNVVGARV 98
LG +LR N S P + KLF+G LSW SL AF +G+VV A+V
Sbjct: 7 LGGLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKV 66
Query: 99 LYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRRS 148
+ D E+GRSRG+GFV ++ + A+ ++G EL GR +RV+ A R S
Sbjct: 67 IVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKP 55
V+ DRETGRSRGF FV + A I +DG+E GR +RVN +D+P
Sbjct: 66 VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 193 (73.0 bits), Expect = 6.3e-15, P = 6.3e-15
Identities = 41/130 (31%), Positives = 74/130 (56%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 50 YCFVEFYENRHAAAALAAMNGRKILGKDMKVNWASTPSSQKK-DTSNHFHVFVGDLSPEI 108
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
+T+ + AF +G + ARV+ D +G+S+GYGF+ + K + E+A++ +NG L GR +
Sbjct: 109 STDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQI 168
Query: 139 RVSLAQGRRS 148
R + A + S
Sbjct: 169 RTNWATRKPS 178
Score = 115 (45.5 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 36/157 (22%), Positives = 74/157 (47%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
+S V+ D TG+S+G+ F++ D + I+ ++G+ GR +R N++ + KP P
Sbjct: 123 ISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATR-KPSAPK 181
Query: 62 ------------YAE-------TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDG 102
Y E ++ ++ G ++ ++ + + Q F +G ++ RV +
Sbjct: 182 SNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPE- 240
Query: 103 ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 139
+GY FV + + A+ S+NG +EG ++
Sbjct: 241 -----KGYSFVRFDSHEGAAHAIVSVNGTCIEGHTVK 272
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 196 (74.1 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 47/141 (33%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V ++ I L G+ LG + V S K +L A
Sbjct: 197 IISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNL 255
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + ++ D ++GRS+GYGF+ +S
Sbjct: 256 QKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 315
Query: 120 EMETALESLNGVELEGRAMRV 140
ALE LNG EL GR MRV
Sbjct: 316 CARRALEQLNGFELAGRPMRV 336
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 196 (74.1 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 47/141 (33%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V ++ I L G+ LG + V S K +L A
Sbjct: 198 IISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNL 256
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + ++ D ++GRS+GYGF+ +S
Sbjct: 257 QKGSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 316
Query: 120 EMETALESLNGVELEGRAMRV 140
ALE LNG EL GR MRV
Sbjct: 317 CARRALEQLNGFELAGRPMRV 337
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 194 (73.4 bits), Expect = 6.7e-15, P = 6.7e-15
Identities = 47/141 (33%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V V I L G+ LG + V S K + A
Sbjct: 27 MISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNL 85
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S
Sbjct: 86 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 145
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 146 CAKKALEQLNGFELAGRPMKV 166
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 194 (73.4 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 42/132 (31%), Positives = 73/132 (55%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+T + + FV A + ++GR+ +G+ ++VN++ P + F +FV
Sbjct: 41 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKK-DTSNHFHVFV 99
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
G+LS +TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A++ + G
Sbjct: 100 GDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 159
Query: 132 ELEGRAMRVSLA 143
L GR +R + A
Sbjct: 160 WLGGRQIRTNWA 171
Score = 102 (41.0 bits), Expect = 0.00073, P = 0.00073
Identities = 37/151 (24%), Positives = 67/151 (44%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK--PKPKL 59
+S V+ D TG+S+G+ FV+ D I+ + G+ GR +R N++ + P PK
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 60 PL--------YAETDFKLFVGNLS---WSVTTESLTQAFQEYGNVVGARVLYDGESGRSR 108
Y E + GN + VT+ Q ++ + G + + +
Sbjct: 181 TYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDK 238
Query: 109 GYGFVCYSTKAEMETALESLNGVELEGRAMR 139
GY F+ +S+ A+ S+NG +EG ++
Sbjct: 239 GYSFIRFSSHESAAHAIVSVNGTTIEGHVVK 269
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 195 (73.7 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 46/141 (32%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V ++ I L G+ LG + V S K +L A
Sbjct: 188 IISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNL 246
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + ++ D ++GRS+GYGF+ +S
Sbjct: 247 QKGTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 306
Query: 120 EMETALESLNGVELEGRAMRV 140
ALE LNG EL GR MR+
Sbjct: 307 CARRALEQLNGFELAGRPMRI 327
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 194 (73.4 bits), Expect = 7.7e-15, P = 7.7e-15
Identities = 42/125 (33%), Positives = 70/125 (56%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 126
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
TT+ + AF +G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +
Sbjct: 127 TTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 186
Query: 139 RVSLA 143
R + A
Sbjct: 187 RTNWA 191
Score = 115 (45.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 36/155 (23%), Positives = 70/155 (45%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK--PKPK- 58
+S V+ D TG+S+G+ FV+ D I ++ G+ GR +R N++ + P PK
Sbjct: 141 ISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 200
Query: 59 --------------LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES 104
+ + + ++ G + +T + Q F +G ++ RV +
Sbjct: 201 VQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPE--- 257
Query: 105 GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 139
+GY F+ +S+ A+ S+NG +EG ++
Sbjct: 258 ---KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVK 289
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 196 (74.1 bits), Expect = 7.9e-15, P = 7.9e-15
Identities = 47/138 (34%), Positives = 74/138 (53%)
Query: 7 VLYDRE-TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET 65
++ D+ + + FV ++ L+GR +RVN++ +
Sbjct: 121 IIPDKNFNSKGANYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSN 180
Query: 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 125
F +FVG+LS V E L QAF +G+V ARV++D ++GRSRGYGFV + +A+ E AL
Sbjct: 181 HFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKAL 240
Query: 126 ESLNGVELEGRAMRVSLA 143
S++G L RA+R + A
Sbjct: 241 TSMDGEWLGSRAIRCNWA 258
Score = 106 (42.4 bits), Expect = 0.00017, P = 0.00017
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE-SGRSRGYGFVCYSTKAEMETALES 127
L+VG L VT + L Q F+ G+V+ +++ D + + YGFV + E A+++
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 128 LNGVELEGRAMRVSLA 143
LNG + +RV+ A
Sbjct: 152 LNGRRIHQSEIRVNWA 167
Score = 99 (39.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLG-RILRVNFSD-KPKPKL 59
+S+ V++D +TGRSRG+ FV D + ++DG E+LG R +R N+++ K +P +
Sbjct: 208 VSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDG-EWLGSRAIRCNWANQKGQPSI 266
Score = 93 (37.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+VGNL+ T + FQ +G V+ R+ D RG+ F+ T +A+ LN
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD------RGFAFIKMDTHENAASAICQLN 364
Query: 130 GVELEGRAMRVSLAQGR 146
G + GR ++ S + R
Sbjct: 365 GYNVNGRPLKCSWGKDR 381
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 194 (73.4 bits), Expect = 9.8e-15, P = 9.8e-15
Identities = 47/141 (33%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V V I L G+ LG + V S K + A
Sbjct: 184 MISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNL 242
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 194 (73.4 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 47/143 (32%), Positives = 80/143 (55%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
+ + ++ D+ + + FV + ++ L+GR +RVN++ +
Sbjct: 111 VQNVKIIPDKNA-KGYNYGFVEYDDPGAADRAMQTLNGRRVHQSEIRVNWAYQAATSATK 169
Query: 62 YAETD-FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE 120
++ F +FVG+LS V E LTQAF +G+V ARV++D ++GRSRGYGFV + +++
Sbjct: 170 EDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSD 229
Query: 121 METALESLNGVELEGRAMRVSLA 143
E AL S++G L RA+R + A
Sbjct: 230 AEKALSSMDGEWLGSRAIRCNWA 252
Score = 104 (41.7 bits), Expect = 0.00050, P = 0.00050
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG L VT + L Q F+ G+V +++ D ++ + YGFV Y + A+++L
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPD-KNAKGYNYGFVEYDDPGAADRAMQTL 145
Query: 129 NGVELEGRAMRVSLA 143
NG + +RV+ A
Sbjct: 146 NGRRVHQSEIRVNWA 160
Score = 101 (40.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLG-RILRVNFSD-KPKPKL 59
+S+ V++D +TGRSRG+ FV D + ++DG E+LG R +R N+++ K +P +
Sbjct: 202 VSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDG-EWLGSRAIRCNWANQKGQPSI 260
Score = 90 (36.7 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 60 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
P Y T +VGNL+ T + FQ +G VV +R D RG+ F+ +
Sbjct: 298 PAYQTT---CYVGNLTPYTTANDVVPLFQNFGYVVESRFQAD------RGFAFIKMDSHE 348
Query: 120 EMETALESLNGVELEGRAMRVSLAQGRRS 148
A+ LNG + GR ++ S + + S
Sbjct: 349 NAAQAICGLNGYNVNGRPLKCSWGKDKNS 377
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 160 (61.4 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 44/141 (31%), Positives = 72/141 (51%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN--------F-SDKPKPKLPLY-- 62
G S+G A + ST E+ I+ L ++++GR++ + F S P
Sbjct: 114 GLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGK 173
Query: 63 -AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
+E D +LFVGNL ++V + L F++ G+V+ A + + E GRSRG G V S+ E
Sbjct: 174 DSEPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEA 232
Query: 122 ETALESLNGVELEGRAMRVSL 142
A++ L+ + GR + V L
Sbjct: 233 MHAIQMLHNTDFMGRTLEVRL 253
Score = 144 (55.7 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 26/75 (34%), Positives = 48/75 (64%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
++VGNL W+ + +L F + G+V+ AR+ Y+ +GRS+G+G V + + + +++E L
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENENDAASSIEKL 370
Query: 129 NGVELEGRAMRVSLA 143
NG GR +++S A
Sbjct: 371 NGYRYGGRPLQLSYA 385
Score = 109 (43.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
Y + + +++VGNLS+ V L + + GNV+ +L + +G S+G + YST E
Sbjct: 72 YTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYSTAEEA 130
Query: 122 ETALESLNGVELEGRAMRV 140
TA+++L+ + GR + +
Sbjct: 131 RTAIKTLSNQKFMGRLVYI 149
Score = 72 (30.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV 49
+ GRSRG V MS++++ I+ L +++GR L V
Sbjct: 214 QEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEV 251
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 47/141 (33%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V V I L G+ LG + V S K + A
Sbjct: 184 MISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNL 242
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 47/141 (33%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V V I L G+ LG + V S K + A
Sbjct: 184 MISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNL 242
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 47/141 (33%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V V I L G+ LG + V S K + A
Sbjct: 184 MISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNL 242
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 47/141 (33%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V V I L G+ LG + V S K + A
Sbjct: 184 MISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNL 242
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 47/141 (33%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V V I L G+ LG + V S K + A
Sbjct: 184 MISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNL 242
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 47/141 (33%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V V I L G+ LG + V S K + A
Sbjct: 184 MISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNL 242
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 47/141 (33%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V V I L G+ LG + V S K + A
Sbjct: 184 MISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNL 242
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 47/141 (33%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V V I L G+ LG + V S K + A
Sbjct: 184 MISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNL 242
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 37/84 (44%), Positives = 53/84 (63%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A KLF+G LSWSV +SL AF +G V R+ YD SGRSRG+GFV ++ + +
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 123 TALESLNGVELEGRAMRVSLAQGR 146
+A ++++G L GR +R+S A R
Sbjct: 97 SAKDAMDGKGLLGRPLRISFALER 120
Score = 102 (41.0 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52
++++ + YD+ +GRSRGF FV + D + + +DG+ LGR LR++F+
Sbjct: 67 VAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFA 117
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 190 (71.9 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 41/132 (31%), Positives = 73/132 (55%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+T + + FV + + ++GR+ +G+ ++VN++ P + F +FV
Sbjct: 41 DTAGNDPYCFVEFYEHRHAASALAAMNGRKIMGKEVKVNWATTPSSQKK-DTSNHFHVFV 99
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
G+LS +TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A++ + G
Sbjct: 100 GDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 159
Query: 132 ELEGRAMRVSLA 143
L GR +R + A
Sbjct: 160 WLGGRQIRTNWA 171
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 189 (71.6 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 41/132 (31%), Positives = 73/132 (55%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+T + + FV A + ++GR+ +G+ ++VN++ P + F +FV
Sbjct: 42 DTAGNDPYCFVEFFEHRHAAASLAAMNGRKIMGKEVKVNWATSPSSQKK-DTSNHFHVFV 100
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
G+LS +TT+ + AF +G + ARV+ D +G+S+GYGFV + K + E A++ + G
Sbjct: 101 GDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 160
Query: 132 ELEGRAMRVSLA 143
L GR +R + A
Sbjct: 161 WLGGRQIRTNWA 172
Score = 108 (43.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 40/151 (26%), Positives = 66/151 (43%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK--PKPKL 59
+S V+ D TG+S+G+ FV+ D I+ + G+ GR +R N++ + P PK
Sbjct: 122 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKA 181
Query: 60 PLYAETDFKLF--VGNLS---------WSVTTESLTQAFQEYGNVVGARVLYDGESGRSR 108
T F V N S VTT Q ++ + G + + +
Sbjct: 182 TYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQ--IMEVRVFPDK 239
Query: 109 GYGFVCYSTKAEMETALESLNGVELEGRAMR 139
GY FV +++ A+ S+NG LEG ++
Sbjct: 240 GYSFVRFNSHESAAHAIVSVNGTSLEGHIVK 270
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 55 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 113
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+G
Sbjct: 114 EQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFG 169
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 170 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 202
Score = 123 (48.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L F ++G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 85 NGKELNGKQIYVGRAQ 100
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 136 (52.9 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
+LF+ +L S T ESL + F + + A V+ D ++ +S+GYGFV ++ + + ALE
Sbjct: 38 ELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAALEE 97
Query: 128 LNGVELEGRAMRVSLAQGR 146
LNG EG+ ++V AQ R
Sbjct: 98 LNGSTFEGKKIKVEYAQPR 116
Score = 121 (47.7 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 68 KLFVGNLSWSVTT-ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
KL V NL WS+ T E L F+ +G V V + + G+GFV K E ALE
Sbjct: 151 KLIVRNLPWSIKTPEDLAAHFRSFGKV--KYVTLPKKGSQLAGFGFVVLRGKKNAEKALE 208
Query: 127 SLNGVELEGRAMRVSLA 143
++NG E++GR + V A
Sbjct: 209 AVNGKEVDGRTLAVDWA 225
Score = 98 (39.6 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 18/59 (30%), Positives = 38/59 (64%)
Query: 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 59
++ V+ D +T +S+G+ FVT + VED A +E L+G + G+ ++V ++ +P+ ++
Sbjct: 62 VIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAALEELNGSTFEGKKIKVEYA-QPRHRV 119
Score = 96 (38.9 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCY 115
+F+ NL ++ ESL F ++G + AR++ D E+ R RG GFVC+
Sbjct: 311 IFIRNLPFTCDDESLYDHFTQFGPLRYARIVVDPETERPRGTGFVCF 357
Score = 78 (32.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 95 GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG 130
G++V D +GRSRGYGF+ Y T L LNG
Sbjct: 571 GSKVSEDSGAGRSRGYGFIEYYTHRHALMGLRWLNG 606
Score = 55 (24.4 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 18 GFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52
GF FV + ++ +E ++G+E GR L V+++
Sbjct: 191 GFGFVVLRGKKNAEKALEAVNGKEVDGRTLAVDWA 225
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 183 (69.5 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 91 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 149
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+G
Sbjct: 150 EQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFG 205
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 206 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 238
Score = 142 (55.0 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 41/136 (30%), Positives = 68/136 (50%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E IE ++G R + V F + + + L A +F
Sbjct: 6 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 64
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L F G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 65 VYIKNFGEDMDDERLKDLF---GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 120
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 121 NGKELNGKQIYVGRAQ 136
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 191 (72.3 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 49/153 (32%), Positives = 82/153 (53%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------KP 57
+ V+ D E G+SRGF FV+ ED ++ ++G+E G+++ V + K K
Sbjct: 220 IRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKR 278
Query: 58 KLPLYAE---TDFK---LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
K + T ++ L+V NL + E L + F +G + A+V+ DG GRS+G+G
Sbjct: 279 KFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDG--GRSKGFG 336
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 42/136 (30%), Positives = 71/136 (52%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E IE ++G R + V F + + + L A +F
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + + L F +YGN + RV+ D E+G+SRG+GFV + + + A++ +
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG E+ G+ + V AQ
Sbjct: 252 NGKEMNGKLIYVGRAQ 267
Score = 168 (64.2 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 43/143 (30%), Positives = 75/143 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ GR +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMAS--LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++GR +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQ 88
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 188 (71.2 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 46/141 (32%), Positives = 72/141 (51%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V ++ I L G+ LG + V S K +L A
Sbjct: 212 IISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNL 270
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L ++T + L + +G + ++ D E+GRS+GYGF+ +S
Sbjct: 271 QKGSGGPVRLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSE 330
Query: 120 EMETALESLNGVELEGRAMRV 140
ALE LNG EL GR MR+
Sbjct: 331 CARRALEQLNGFELAGRPMRI 351
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 187 (70.9 bits), Expect = 5.9e-14, P = 5.9e-14
Identities = 42/144 (29%), Positives = 78/144 (54%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLG--RILRVNFSDKPKPKLPLYAE 64
++ +++TG+S + FV +T V+++ +G + R+N++ +
Sbjct: 115 IIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETG 174
Query: 65 TDFKLFVGNLSWSVTTESLTQAF-QEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 123
+DF +FVG+L+ VT L F Y ++ GA+V+ D +G S+GYGFV + ++E
Sbjct: 175 SDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSR 234
Query: 124 ALESLNGVELEGRAMRVSLAQGRR 147
A+ +NGV RAMR+ +A ++
Sbjct: 235 AMTEMNGVYCSSRAMRIGVATPKK 258
Score = 109 (43.4 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVG L VT E L Q+F ++G VV ++ +G+ G GFV +S ++ + A++ L
Sbjct: 297 IFVGGLDSEVTDEELRQSFNQFGEVVSVKI----PAGK--GCGFVQFSDRSSAQEAIQKL 350
Query: 129 NGVELEGRAMRVS 141
+G + +A+R+S
Sbjct: 351 SGAIIGKQAVRLS 363
Score = 102 (41.0 bits), Expect = 0.00089, P = 0.00089
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
+E + +++G+L + L F + G V+ +++ + ++G+S YGFV ++T A E
Sbjct: 80 SEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAE 139
Query: 123 TALESLNG 130
L+S NG
Sbjct: 140 KVLQSYNG 147
Score = 63 (27.2 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57
V+ D TG S+G+ FV + + + ++G R +R+ + KP
Sbjct: 209 VVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKP 259
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 188 (71.2 bits), Expect = 6.5e-14, P = 6.5e-14
Identities = 37/79 (46%), Positives = 55/79 (69%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVG LSW+V + L Q F+EYG +VGARV+ DG+SGRS+GYG+V + T + A+ +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA- 323
Query: 129 NGV-ELEGRAMRVSLAQGR 146
NG E++GR + + L+ R
Sbjct: 324 NGTKEIDGRMVNLDLSNPR 342
Score = 170 (64.9 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 47/153 (30%), Positives = 82/153 (53%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL-YAET 65
V+ D ++GRS+G+ +V T E A + +E GR++ ++ S+ P+P P YA+
Sbjct: 294 VIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSN-PRPANPQPYAQQ 352
Query: 66 ---DF---------KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV 113
+F +FVGNLS++ T + L+ AF G++ R+ D +SGR +G+G+V
Sbjct: 353 RAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYV 412
Query: 114 CYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146
+S + +E +NG + GR R+ + R
Sbjct: 413 TFSDIDSAKKCVE-MNGHFIAGRPCRLDFSTPR 444
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 189 (71.6 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 53/157 (33%), Positives = 85/157 (54%)
Query: 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRIL-------RVNFSD 53
MLS + V+ D ++G SRGF FV E+ + N++GRE GR+L RV +
Sbjct: 217 MLS-VKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQN 274
Query: 54 KPKPKLPLYAE---TDFK---LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRS 107
+ K + + T ++ L+V NL S+ E L + F YG + A+V+ +G G S
Sbjct: 275 ELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG--GHS 332
Query: 108 RGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
+G+GFVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Score = 166 (63.5 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 44/134 (32%), Positives = 71/134 (52%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-KLFVG 72
SRGF FV T E I ++G R + V +F + + ++ L A +F ++V
Sbjct: 137 SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
NL V + L F ++G ++ +V+ D +SG SRG+GFV + E + A+ ++NG E
Sbjct: 197 NLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNMNGRE 255
Query: 133 LEGRAMRVSLAQGR 146
+ GR + V AQ R
Sbjct: 256 VSGRLLYVGRAQKR 269
Score = 154 (59.3 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 40/143 (27%), Positives = 73/143 (51%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A++ D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRD-PGLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E G SRG+GFV + T + A
Sbjct: 99 GN--IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-EHG-SRGFGFVHFETHEAAQNA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+ ++NG+ L R + V + RR
Sbjct: 155 ISTMNGMLLNDRKVFVGHFKSRR 177
Score = 109 (43.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G ++ RV D + RS GY ++ + A+ E AL+++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++G+ +R+ +Q
Sbjct: 73 NFEVIKGQPIRIMWSQ 88
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 188 (71.2 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 46/141 (32%), Positives = 74/141 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V I L G+ LG + V S K + A
Sbjct: 198 MISDRNSRRSKGIAYVEFVDSTSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMASML 256
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + G +++ D E+GRS+GYGF+ ++
Sbjct: 257 QRGGAGPMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAE 316
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 317 CAKKALEQLNGFELAGRPMKV 337
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 189 (71.6 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 52/151 (34%), Positives = 76/151 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------KPKL 59
V+ D E GRSRGF FV D + ++G+E GR+L V + K K K
Sbjct: 222 VMTD-ERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKF 280
Query: 60 PLYAETDFK------LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV 113
+ + L+V NL S+ E L + F YG + A+V+ DG G SRG+GFV
Sbjct: 281 EQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDG--GHSRGFGFV 338
Query: 114 CYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
C+S+ E A+ +NG + + + V+LAQ
Sbjct: 339 CFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Score = 172 (65.6 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 45/138 (32%), Positives = 71/138 (51%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E N IE ++G R + V +F + + + + A+ +F
Sbjct: 134 ENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + +E L F E+G + V+ D E GRSRG+GFV + + A+ +
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEM 251
Query: 129 NGVELEGRAMRVSLAQGR 146
NG EL GR + V AQ R
Sbjct: 252 NGKELNGRVLYVGRAQKR 269
Score = 161 (61.7 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 40/146 (27%), Positives = 76/146 (52%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
+ + V D T RS G+A++ D ++ ++ GR +R+ +S + P L
Sbjct: 37 IMSIRVCRDVITRRSLGYAYINFQQPADAECALDTMNYEVIKGRPIRIMWSQRD-PGLRK 95
Query: 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
+ +F+ N+ S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+
Sbjct: 96 SGVGN--IFIKNMDESIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAA 151
Query: 122 ETALESLNGVELEGRAMRVSLAQGRR 147
A+E++NG+ L R + V + R+
Sbjct: 152 NRAIETMNGMLLNDRKVFVGHFKSRK 177
Score = 117 (46.2 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L Q F G ++ RV D + RS GY ++ + A+ E AL+++
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++GR +R+ +Q
Sbjct: 73 NYEVIKGRPIRIMWSQ 88
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 45/142 (31%), Positives = 76/142 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET----- 65
+T + + FV A + ++GR+ +G+ ++VN++ P K + T
Sbjct: 41 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQ 100
Query: 66 ---D-FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
D F +FVG+LS +TTE + AF +G + ARV+ D +G+S+GYGFV + K +
Sbjct: 101 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 122 ETALESLNGVELEGRAMRVSLA 143
E A++ + G L GR +R + A
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWA 182
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 188 (71.2 bits), Expect = 8.2e-14, P = 8.2e-14
Identities = 41/149 (27%), Positives = 82/149 (55%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP---KPK 58
++ +T++ D + G+S+GF F + E V+EN +G+ + G+ + + K + +
Sbjct: 214 ITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAE 272
Query: 59 LPLYAETDFK---LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCY 115
L ET ++ L++ N+ S+ + L + F ++G + A V+ D ++ S+G+GFVCY
Sbjct: 273 LKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332
Query: 116 STKAEMETALESLNGVELEGRAMRVSLAQ 144
+ E A+ +NG + + + V+LAQ
Sbjct: 333 TAPDEATRAVTEMNGRMIGTKPLYVALAQ 361
Score = 153 (58.9 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 36/140 (25%), Positives = 70/140 (50%)
Query: 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP 60
++S + V D T RS +A+V D ++ L+ G+ R+ +S + P L
Sbjct: 35 LVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRD-PSLR 93
Query: 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE 120
+ +F+ NL + ++L F +GN++ +V+ D + S+G+GFV Y T+
Sbjct: 94 KSGVGN--VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQES 150
Query: 121 METALESLNGVELEGRAMRV 140
+ A+ +NG+ + G+ + V
Sbjct: 151 ADKAIAKVNGMMINGQKVFV 170
Score = 133 (51.9 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 36/131 (27%), Positives = 61/131 (46%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAETDF-KLFVGN 73
S+GF FV T E + I ++G G+ + V F + P E F +F N
Sbjct: 137 SKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQP--TEVKFTNVFFKN 194
Query: 74 LSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 133
LS V + L + Q+YG + ++ D + G+S+G+GF + + + +E+ NG
Sbjct: 195 LSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIF 253
Query: 134 EGRAMRVSLAQ 144
G+ + AQ
Sbjct: 254 HGKPIYAGRAQ 264
Score = 118 (46.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L V+ + L + F + G V RV D + RS Y +V Y A+ E AL++L
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 129 NGVELEGRAMRVSLAQ 144
N + G+A R+ +Q
Sbjct: 72 NNTPIRGKACRIMWSQ 87
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 187 (70.9 bits), Expect = 9.1e-14, P = 9.1e-14
Identities = 45/141 (31%), Positives = 73/141 (51%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A++ I L G+ LG + V S K + A
Sbjct: 180 IISDRNSRRSKGIAYIEFVDSTSVPLAI-GLSGQRLLGVPIIVQASQAEKNRAAALANNL 238
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S
Sbjct: 239 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAE 298
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 299 CAKKALEQLNGFELAGRPMKV 319
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 188 (71.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 48/153 (31%), Positives = 82/153 (53%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF 280
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L +AF +G + A+V+ +G GRS+G+G
Sbjct: 281 EQMKQDRITRYQVVN--LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFG 336
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 41/136 (30%), Positives = 71/136 (52%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E I+ ++G GR + V F + + + L A +F
Sbjct: 134 ENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L F ++G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 252 NGKELNGKQIYVGRAQ 267
Score = 149 (57.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 39/143 (27%), Positives = 72/143 (50%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ + D T S +A+V +D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +FV NL S+ ++L +GN++ V+ D E+G S+GYGFV + T E A
Sbjct: 99 GN--IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
++ +NG+ L GR + V + R+
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSRK 177
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 30/77 (38%), Positives = 54/77 (70%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
K++VG+LS+ VT + L F +YG + A+++ D E+GRS+G+ F+ Y T+ + A+
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 128 LNGVELEGRAMRVSLAQ 144
NG++L+GR +RV++A+
Sbjct: 79 ANGIDLQGRKIRVNIAR 95
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52
+ + ++ DRETGRS+GFAF+T T + + +G + GR +RVN +
Sbjct: 44 IEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDLQGRKIRVNIA 94
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 30/77 (38%), Positives = 54/77 (70%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
K++VG+LS+ VT + L F +YG + A+++ D E+GRS+G+ F+ Y T+ + A+
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 128 LNGVELEGRAMRVSLAQ 144
NG++L+GR +RV++A+
Sbjct: 79 ANGIDLQGRKIRVNIAR 95
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52
+ + ++ DRETGRS+GFAF+T T + + +G + GR +RVN +
Sbjct: 44 IEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDLQGRKIRVNIA 94
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 188 (71.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 47/143 (32%), Positives = 79/143 (55%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V DR T RS G+A V +ED ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVYRDRTTRRSLGYASVNFQQLEDAERALDTMNFDVIKGKPVRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +FV NL S+ +++L F +GN++ +V+ D E+G S+GYGFV + T+ E E A
Sbjct: 99 GN--IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEEAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + RR
Sbjct: 155 IEKMNGMFLNDRKVFVGRFKSRR 177
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 41/136 (30%), Positives = 69/136 (50%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E+ IE ++G R + V F + + L A +F
Sbjct: 134 ENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ NL + E L F +G + +V+ D ESG+S+G+GFV + + A++ +
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG +L G+ + V AQ
Sbjct: 252 NGKDLNGKQIYVGRAQ 267
Score = 134 (52.2 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 53 DKPK-PKLPLYAET---DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSR 108
DKPK ++P L+V NL + E L + F +G + A+V +G GRS+
Sbjct: 286 DKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG--GRSK 343
Query: 109 GYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
G+GFVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 344 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 379
Score = 76 (31.8 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
V+ D E+G+S+GF FV+ ED ++ ++G++ G+ + V + K
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQK 268
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 185 (70.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 40/133 (30%), Positives = 76/133 (57%)
Query: 11 RETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP--KPKLPLYAETDFK 68
RE G +AF+ S + + ++ R +L + ++VN++ P +PK + +
Sbjct: 40 REPGNDP-YAFIEYSNYQAATTALTAMNKRLFLEKEIKVNWATSPGNQPKTDI--SSHHH 96
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVG+LS + TE+L +AF +G + R++ D + +S+GY FV + KAE E A++++
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 129 NGVELEGRAMRVS 141
NG + R++R +
Sbjct: 157 NGQWIGSRSIRTN 169
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 186 (70.5 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 50/154 (32%), Positives = 82/154 (53%)
Query: 5 LTVLYDRE-TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------K 56
L+V R+ G+S+GF FV+ ED N +E ++G+E G+I+ V + K K
Sbjct: 120 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 179
Query: 57 PKLP-LYAET-----DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 110
K L E L++ NL ++ E L + F +G++ A+V+ E GRS+G+
Sbjct: 180 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGF 237
Query: 111 GFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
GFVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 238 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 271
Score = 171 (65.3 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 43/136 (31%), Positives = 73/136 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+AFV T E + IE ++G R + V F + + + L A+ +F
Sbjct: 36 ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 94
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N V ESL + F ++G + +V+ D +G+S+G+GFV Y + A+E +
Sbjct: 95 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 153
Query: 129 NGVELEGRAMRVSLAQ 144
NG E+ G+ + V AQ
Sbjct: 154 NGKEISGKIIFVGRAQ 169
Score = 123 (48.4 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+F+ NL S+ ++L F +GN++ +V+ D E+G S+GY FV + T+ + A+E +
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 129 NGVELEGRAMRVSLAQGRR 147
NG+ L R + V + R+
Sbjct: 61 NGMLLNDRKVFVGRFKSRK 79
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 49/154 (31%), Positives = 83/154 (53%)
Query: 5 LTVLYDRE-TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------K 56
L+V R+ +G+S+GF FV+ ED N +E ++G+E G+++ V + K K
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELK 277
Query: 57 PKLP-LYAET-----DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 110
K L E L++ NL ++ E L + F +G++ A+V+ E GRS+G+
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGF 335
Query: 111 GFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
GFVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 171 (65.3 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 43/136 (31%), Positives = 73/136 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+AFV T E + IE ++G R + V F + + + L A+ +F
Sbjct: 134 ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N V E+L + F ++G + +V+ D SG+S+G+GFV Y + A+E +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG E+ G+ + V AQ
Sbjct: 252 NGKEITGKVIFVGRAQ 267
Score = 156 (60.0 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 40/143 (27%), Positives = 74/143 (51%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GY FV + T+ + A
Sbjct: 99 GN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 186 (70.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 45/137 (32%), Positives = 75/137 (54%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL----PLY---AE 64
+T R +G A++ E A+ L G+ LG + V + K +L P + +
Sbjct: 273 KTKRFKGIAYIEFDDPESV-ALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSH 331
Query: 65 TD-FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 123
T +L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ Y + +
Sbjct: 332 TGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKK 391
Query: 124 ALESLNGVELEGRAMRV 140
ALE LNG EL GR M+V
Sbjct: 392 ALEQLNGFELAGRLMKV 408
Score = 104 (41.7 bits), Expect = 0.00067, P = 0.00067
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV-NFSDK 54
+ + ++ D ETGRS+G+ F+T +D +E L+G E GR+++V N +++
Sbjct: 361 IDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTER 414
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 186 (70.5 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 50/154 (32%), Positives = 82/154 (53%)
Query: 5 LTVLYDRE-TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------K 56
L+V R+ G+S+GF FV+ ED N +E ++G+E G+I+ V + K K
Sbjct: 218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Query: 57 PKLP-LYAET-----DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 110
K L E L++ NL ++ E L + F +G++ A+V+ E GRS+G+
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGF 335
Query: 111 GFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
GFVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 171 (65.3 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 43/136 (31%), Positives = 73/136 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+AFV T E + IE ++G R + V F + + + L A+ +F
Sbjct: 134 ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N V ESL + F ++G + +V+ D +G+S+G+GFV Y + A+E +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG E+ G+ + V AQ
Sbjct: 252 NGKEISGKIIFVGRAQ 267
Score = 156 (60.0 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 40/143 (27%), Positives = 74/143 (51%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GY FV + T+ + A
Sbjct: 99 GN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 186 (70.5 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 47/156 (30%), Positives = 81/156 (51%)
Query: 4 KLTVLY--DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP- 60
K+T +Y + G+S+GF FV E +E L+ +E G+ + V + K + +L
Sbjct: 258 KITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEE 317
Query: 61 ------------LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSR 108
L LFV NL ++ +E L + F+ +G + A+V+ D E+G+S+
Sbjct: 318 LKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSK 376
Query: 109 GYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
G+GFVC++T E A+ +N + G+ + V+LAQ
Sbjct: 377 GFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQ 412
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 42/140 (30%), Positives = 71/140 (50%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK-PKPKLP 60
+S + V D + +S G+A+V ED IE L+ GR R+ +S + P +
Sbjct: 78 VSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSAR-- 135
Query: 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE 120
D +F+ NL ++ ++L F +G ++ +V D E G+S+ +GFV Y T
Sbjct: 136 --RSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEA 192
Query: 121 METALESLNGVELEGRAMRV 140
E A+E++NG+ L R + V
Sbjct: 193 AEAAIENVNGMLLNDREVFV 212
Score = 149 (57.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 41/139 (29%), Positives = 68/139 (48%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE--TDF-K 68
E G+S+ F FV T E A IEN++G R + V K + + E +F
Sbjct: 175 EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTN 234
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
++V N+ + + ES + F +G + + D + G+S+G+GFV + A+E L
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKD-QDGKSKGFGFVNFEDHESAVKAVEEL 293
Query: 129 NGVELEGRAMRVSLAQGRR 147
N E+ G+ + V AQ +R
Sbjct: 294 NDKEINGQKIYVGRAQKKR 312
Score = 125 (49.1 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 31/82 (37%), Positives = 42/82 (51%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
AE L+VG L+ SV +L + F G V RV D S +S GY +V Y + E
Sbjct: 48 AENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGE 107
Query: 123 TALESLNGVELEGRAMRVSLAQ 144
A+E LN +EGR R+ +Q
Sbjct: 108 KAIEELNYNPIEGRPCRIMWSQ 129
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 186 (70.5 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 49/154 (31%), Positives = 83/154 (53%)
Query: 5 LTVLYDRE-TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------K 56
L+V R+ +G+S+GF FV+ ED N +E ++G+E G+++ V + K K
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Query: 57 PKLP-LYAET-----DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 110
K L E L++ NL ++ E L + F +G++ A+V+ E GRS+G+
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGF 335
Query: 111 GFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
GFVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 175 (66.7 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 44/136 (32%), Positives = 73/136 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+AFV T E + IE ++G R + V F + + + L A+ +F
Sbjct: 134 ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N V ESL + F ++G + +V+ D SG+S+G+GFV Y + A+E +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG E+ G+ + V AQ
Sbjct: 252 NGKEISGKVIFVGRAQ 267
Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 40/143 (27%), Positives = 74/143 (51%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GY FV + T+ + A
Sbjct: 99 GN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 186 (70.5 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 49/154 (31%), Positives = 83/154 (53%)
Query: 5 LTVLYDRE-TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------K 56
L+V R+ +G+S+GF FV+ ED N +E ++G+E G+++ V + K K
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Query: 57 PKLP-LYAET-----DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 110
K L E L++ NL ++ E L + F +G++ A+V+ E GRS+G+
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGF 335
Query: 111 GFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
GFVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 172 (65.6 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 43/136 (31%), Positives = 73/136 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+AFV T E + IE ++G R + V F + + + L A+ +F
Sbjct: 134 ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N V E+L + F ++G + +V+ D SG+S+G+GFV Y + A+E +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG E+ G+ + V AQ
Sbjct: 252 NGKEISGKVIFVGRAQ 267
Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 40/143 (27%), Positives = 74/143 (51%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GY FV + T+ + A
Sbjct: 99 GN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
F ++VGN + T + L F + GNV R++ D E+GR RG+ FV ++ +A + A++
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 127 SLNGVELEGRAMRVSLAQGRRS 148
NGV+ GRA+RV+LAQ R +
Sbjct: 64 QFNGVDFNGRALRVNLAQNRNN 85
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52
+S + ++ DRETGR RGFAFV + ++ +G ++ GR LRVN +
Sbjct: 30 VSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
F ++VGN + T + L F + GNV R++ D E+GR RG+ FV ++ +A + A++
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 127 SLNGVELEGRAMRVSLAQGRRS 148
NGV+ GRA+RV+LAQ R +
Sbjct: 64 QFNGVDFNGRALRVNLAQNRNN 85
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52
+S + ++ DRETGR RGFAFV + ++ +G ++ GR LRVN +
Sbjct: 30 VSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 36/75 (48%), Positives = 51/75 (68%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
+++VGNLS + T + L +AF YGNVV A V+ D + RSRG+GFV YS+ +E E A+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 128 LNGVELEGRAMRVSL 142
++G EL GR + V L
Sbjct: 64 MDGKELNGRRVSVKL 78
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV 49
V+ DR T RSRGF FVT S+ + A + +DG+E GR + V
Sbjct: 34 VMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSV 76
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 184 (69.8 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 48/152 (31%), Positives = 76/152 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS--------DKPKPK 58
V+ DRE+GRS+GF +V +T E+ G GR ++V+FS D +
Sbjct: 270 VITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGAR 329
Query: 59 LPLYAET----DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVC 114
Y +T LFVGNL + +S+ F E V R+ + ESGR +G+G+V
Sbjct: 330 AKKYGDTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVT 389
Query: 115 YSTKAEMETALESLNGVELEGRAMRVSLAQGR 146
+++ + ++A E LNG + GR R+ + R
Sbjct: 390 FNSVEDAKSAFEQLNGQSINGRNCRLDYSTPR 421
Score = 169 (64.5 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 34/78 (43%), Positives = 49/78 (62%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
LFVGNLSW+V L + F+ G V ARV+ D ESGRS+G+G+V ++T E E A
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 129 NGVELEGRAMRVSLAQGR 146
G ++GR ++V + G+
Sbjct: 301 QGAFIDGREIKVDFSTGK 318
Score = 103 (41.3 bits), Expect = 0.00075, P = 0.00075
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57
++E+GR +GF +VT ++VED + E L+G+ GR R+++S P+P
Sbjct: 376 EQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLDYST-PRP 422
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 186 (70.5 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 50/154 (32%), Positives = 82/154 (53%)
Query: 5 LTVLYDRE-TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------K 56
L+V R+ G+S+GF FV+ ED N +E ++G+E G+I+ V + K K
Sbjct: 218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Query: 57 PKLP-LYAET-----DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 110
K L E L++ NL ++ E L + F +G++ A+V+ E GRS+G+
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGF 335
Query: 111 GFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
GFVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 171 (65.3 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 43/136 (31%), Positives = 73/136 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+AFV T E + IE ++G R + V F + + + L A+ +F
Sbjct: 134 ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N V ESL + F ++G + +V+ D +G+S+G+GFV Y + A+E +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG E+ G+ + V AQ
Sbjct: 252 NGKEISGKIIFVGRAQ 267
Score = 156 (60.0 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 40/143 (27%), Positives = 74/143 (51%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GY FV + T+ + A
Sbjct: 99 GN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 186 (70.5 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 49/154 (31%), Positives = 83/154 (53%)
Query: 5 LTVLYDRE-TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------K 56
L+V R+ +G+S+GF FV+ ED N +E ++G+E G+++ V + K K
Sbjct: 258 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 317
Query: 57 PKLP-LYAET-----DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 110
K L E L++ NL ++ E L + F +G++ A+V+ E GRS+G+
Sbjct: 318 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGF 375
Query: 111 GFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
GFVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 376 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 409
Score = 175 (66.7 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 44/136 (32%), Positives = 73/136 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+AFV T E + IE ++G R + V F + + + L A+ +F
Sbjct: 174 ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 232
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N V ESL + F ++G + +V+ D SG+S+G+GFV Y + A+E +
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEM 291
Query: 129 NGVELEGRAMRVSLAQ 144
NG E+ G+ + V AQ
Sbjct: 292 NGKEISGKVIFVGRAQ 307
Score = 124 (48.7 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 31/104 (29%), Positives = 58/104 (55%)
Query: 44 GRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 103
G+ +R+ +S + P L + +F+ NL S+ ++L F +GN++ +V+ D E
Sbjct: 119 GKPIRIMWSQRD-PSLRKSGVGN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 174
Query: 104 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 147
+G S+GY FV + T+ + A+E +NG+ L R + V + R+
Sbjct: 175 NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 217
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 183 (69.5 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 54 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 112
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+G
Sbjct: 113 EQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFG 168
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 169 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 201
Score = 125 (49.1 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L + F ++G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 84 NGKELNGKQIYVGRAQ 99
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 184 (69.8 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 46/147 (31%), Positives = 78/147 (53%)
Query: 13 TGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNFSDKPKP 57
TG+SRGF FV+ ED N +E ++G E ++GR L+ F +
Sbjct: 228 TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQE 287
Query: 58 KLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYST 117
++ Y + L++ NL ++ E L + F +G++ A+V+ E GRS+G+GFVC+S+
Sbjct: 288 RISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSS 343
Query: 118 KAEMETALESLNGVELEGRAMRVSLAQ 144
E A+ +NG + + + V+LAQ
Sbjct: 344 PEEATKAVTEMNGRIVGSKPLYVALAQ 370
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 41/136 (30%), Positives = 72/136 (52%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+AFV T + + IE ++G R + V F + + + + A+ +F
Sbjct: 135 ENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTN 193
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + + L + F +YG + +V+ D +G+SRG+GFV Y + A+E +
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTD-PTGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 253 NGTELNGKTVFVGRAQ 268
Score = 155 (59.6 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 40/143 (27%), Positives = 74/143 (51%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 41 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVVKGKPIRIMWSQRD-PSLRKSGV 99
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GY FV + T+ + A
Sbjct: 100 GN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRA 155
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 156 IEKMNGMLLNDRKVFVGRFKSRK 178
Score = 107 (42.7 bits), Expect = 0.00010, P = 0.00010
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L +T L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 129 NGVELEGRAMRVSLAQ 144
N ++G+ +R+ +Q
Sbjct: 74 NFDVVKGKPIRIMWSQ 89
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 181 (68.8 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 47/151 (31%), Positives = 77/151 (50%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLG--RILRVNFSD-KPKPK 58
+S + V+ ++ T +S G+ FV + V++N G + R+N++ K
Sbjct: 134 VSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEK 193
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYST 117
+ D +FVG+LS VT L + F + Y +V A+V+ D +GRS+GYGFV +
Sbjct: 194 RAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGD 253
Query: 118 KAEMETALESLNGVELEGRAMRVSLAQGRRS 148
+ E AL +NG R MRV +A +R+
Sbjct: 254 ENERSRALTEMNGAYCSNRQMRVGIATPKRA 284
Score = 104 (41.7 bits), Expect = 0.00043, P = 0.00043
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
T+ +FVG + V E L Q F ++G VV ++ +G GFV ++ + E A
Sbjct: 319 TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFADRKSAEDA 372
Query: 125 LESLNGVELEGRAMRVS 141
+ESLNG + +R+S
Sbjct: 373 IESLNGTVIGKNTVRLS 389
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 183 (69.5 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 158 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 216
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+G
Sbjct: 217 EQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFG 272
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 273 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 305
Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 41/136 (30%), Positives = 71/136 (52%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E IE ++G R + V F + + + L A +F
Sbjct: 70 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 128
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L + F ++G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 188 NGKELNGKQIYVGRAQ 203
Score = 133 (51.9 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A+E +
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 94
Query: 129 NGVELEGRAMRVSLAQGRR 147
NG+ L R + V + R+
Sbjct: 95 NGMLLNDRKVFVGRFKSRK 113
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 183 (69.5 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 177 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 235
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+G
Sbjct: 236 EQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFG 291
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 292 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 324
Score = 161 (61.7 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 40/135 (29%), Positives = 72/135 (53%)
Query: 13 TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVG 72
T RS G+A+V D ++ ++ G+ +R+ +S + P L + +F+
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD-PSLRKSGVGN--IFIK 59
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A+E +NG+
Sbjct: 60 NLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGML 117
Query: 133 LEGRAMRVSLAQGRR 147
L R + V + R+
Sbjct: 118 LNDRKVFVGRFKSRK 132
Score = 157 (60.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 41/136 (30%), Positives = 70/136 (51%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E IE ++G R + V F + + + L A +F
Sbjct: 89 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 147
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L F ++G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 207 NGKELNGKQIYVGRAQ 222
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 183 (69.5 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 190 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 248
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+G
Sbjct: 249 EQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFG 304
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 305 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 337
Score = 161 (61.7 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 45/146 (30%), Positives = 75/146 (51%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLP 60
L K V+ D E G S+G+ FV T E IE ++G R + V F + + +
Sbjct: 93 LRKSGVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 150
Query: 61 LYAET-DF-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
L A +F +++ N + E L F ++G + +V+ D ESG+S+G+GFV +
Sbjct: 151 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 209
Query: 119 AEMETALESLNGVELEGRAMRVSLAQ 144
+ + A++ +NG EL G+ + V AQ
Sbjct: 210 EDAQKAVDEMNGKELNGKQIYVGRAQ 235
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 179 (68.1 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 45/142 (31%), Positives = 76/142 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET----- 65
+T + + FV A + ++GR+ +G+ ++VN++ P K + T
Sbjct: 37 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQ 96
Query: 66 ---D-FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
D F +FVG+LS +TTE + AF +G + ARV+ D +G+S+GYGFV + K +
Sbjct: 97 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 156
Query: 122 ETALESLNGVELEGRAMRVSLA 143
E A++ + G L GR +R + A
Sbjct: 157 ENAIQQMGGQWLGGRQIRTNWA 178
Score = 102 (41.0 bits), Expect = 0.00075, P = 0.00075
Identities = 37/151 (24%), Positives = 67/151 (44%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK--PKPKL 59
+S V+ D TG+S+G+ FV+ D I+ + G+ GR +R N++ + P PK
Sbjct: 128 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 187
Query: 60 PL--------YAETDFKLFVGNLS---WSVTTESLTQAFQEYGNVVGARVLYDGESGRSR 108
Y E + GN + VT+ Q ++ + G + + +
Sbjct: 188 TYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDK 245
Query: 109 GYGFVCYSTKAEMETALESLNGVELEGRAMR 139
GY F+ +S+ A+ S+NG +EG ++
Sbjct: 246 GYSFIRFSSHESAAHAIVSVNGTTIEGHVVK 276
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 179 (68.1 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 45/142 (31%), Positives = 76/142 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET----- 65
+T + + FV A + ++GR+ +G+ ++VN++ P K + T
Sbjct: 41 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQ 100
Query: 66 ---D-FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
D F +FVG+LS +TTE + AF +G + ARV+ D +G+S+GYGFV + K +
Sbjct: 101 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 122 ETALESLNGVELEGRAMRVSLA 143
E A++ + G L GR +R + A
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWA 182
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 179 (68.1 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 45/142 (31%), Positives = 76/142 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET----- 65
+T + + FV A + ++GR+ +G+ ++VN++ P K + T
Sbjct: 41 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQ 100
Query: 66 ---D-FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
D F +FVG+LS +TTE + AF +G + ARV+ D +G+S+GYGFV + K +
Sbjct: 101 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 122 ETALESLNGVELEGRAMRVSLA 143
E A++ + G L GR +R + A
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWA 182
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 179 (68.1 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 45/142 (31%), Positives = 76/142 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET----- 65
+T + + FV A + ++GR+ +G+ ++VN++ P K + T
Sbjct: 41 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQ 100
Query: 66 ---D-FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
D F +FVG+LS +TTE + AF +G + ARV+ D +G+S+GYGFV + K +
Sbjct: 101 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 122 ETALESLNGVELEGRAMRVSLA 143
E A++ + G L GR +R + A
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWA 182
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VGNL W + +E L + E+G V+GARV+ + +GRSRGYGF+ + + E + L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDE-DAEKFMTGL 63
Query: 129 NGVELEGRAMRVSLAQGR 146
NG E+EGR + VS A+ R
Sbjct: 64 NGKEVEGRQLVVSEARER 81
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VGNL W + +E L + E+G V+GARV+ + +GRSRGYGF+ + + E + L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDE-DAEKFMTGL 63
Query: 129 NGVELEGRAMRVSLAQGR 146
NG E+EGR + VS A+ R
Sbjct: 64 NGKEVEGRQLVVSEARER 81
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+G
Sbjct: 281 EQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFG 336
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 42/143 (29%), Positives = 75/143 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 41/136 (30%), Positives = 71/136 (52%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E IE ++G R + V F + + + L A +F
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L + F ++G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 252 NGKELNGKQIYVGRAQ 267
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+G
Sbjct: 281 EQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFG 336
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 42/143 (29%), Positives = 75/143 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 41/136 (30%), Positives = 71/136 (52%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E IE ++G R + V F + + + L A +F
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L + F ++G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 252 NGKELNGKQIYVGRAQ 267
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+G
Sbjct: 281 EQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFG 336
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 42/143 (29%), Positives = 75/143 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 157 (60.3 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 41/136 (30%), Positives = 70/136 (51%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E IE ++G R + V F + + + L A +F
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L F ++G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 252 NGKELNGKQIYVGRAQ 267
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+G
Sbjct: 281 EQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFG 336
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 42/143 (29%), Positives = 75/143 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 157 (60.3 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 41/136 (30%), Positives = 70/136 (51%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E IE ++G R + V F + + + L A +F
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L F ++G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 252 NGKELNGKQIYVGRAQ 267
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+G
Sbjct: 281 EQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFG 336
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 42/143 (29%), Positives = 75/143 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 157 (60.3 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 41/136 (30%), Positives = 70/136 (51%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E IE ++G R + V F + + + L A +F
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L F ++G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 252 NGKELNGKQIYVGRAQ 267
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+G
Sbjct: 281 EQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFG 336
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 42/143 (29%), Positives = 75/143 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 157 (60.3 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 41/136 (30%), Positives = 70/136 (51%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E IE ++G R + V F + + + L A +F
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L F ++G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 252 NGKELNGKQIYVGRAQ 267
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+G
Sbjct: 281 EQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFG 336
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 42/143 (29%), Positives = 75/143 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 157 (60.3 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 41/136 (30%), Positives = 70/136 (51%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E IE ++G R + V F + + + L A +F
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L F ++G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 252 NGKELNGKQIYVGRAQ 267
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L T L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMAS--LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 53/157 (33%), Positives = 85/157 (54%)
Query: 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP---KP 57
MLS + V+ D ++G SRGF FV E+ + +++G+E GR+L V + K +
Sbjct: 217 MLS-VKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQS 274
Query: 58 KLPLYAE-------TDFK---LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRS 107
+L E T ++ L+V NL S+ E L + F YG + A+V+ +G G S
Sbjct: 275 ELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG--GHS 332
Query: 108 RGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
+G+GFVC+S+ E A+ +NG L + + V+LAQ
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQ 369
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 44/134 (32%), Positives = 69/134 (51%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-KLFVG 72
SRGF FV T E I ++G R + V +F + + ++ L A +F ++V
Sbjct: 137 SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
NL V + L F +G ++ +V+ D +SG SRG+GFV + E + A+ +NG E
Sbjct: 197 NLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDMNGKE 255
Query: 133 LEGRAMRVSLAQGR 146
+ GR + V AQ R
Sbjct: 256 VSGRLLYVGRAQKR 269
Score = 149 (57.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 39/143 (27%), Positives = 73/143 (51%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A++ D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRD-PGLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D + G SRG+GFV + T + A
Sbjct: 99 GN--IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-DHG-SRGFGFVHFETHEAAQQA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+ ++NG+ L R + V + RR
Sbjct: 155 ITTMNGMLLNDRKVFVGHFKSRR 177
Score = 109 (43.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G ++ RV D + RS GY ++ + A+ E AL+++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++G+ +R+ +Q
Sbjct: 73 NFEVIKGQPIRIMWSQ 88
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 180 (68.4 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 45/148 (30%), Positives = 78/148 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREY--LGRILRVNFSDKPKPKLPLY 62
L V+ ++ G S G+ FV + + + V++ +G + R+N++ + L
Sbjct: 134 LKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLE 193
Query: 63 AE-TDFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAE 120
D +FVG+L+ V+ L + F E Y +V A+V+ D +GRS+GYGFV + + E
Sbjct: 194 NNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENE 253
Query: 121 METALESLNGVELEGRAMRVSLAQGRRS 148
A+ +NGV+ RAMR+ A R++
Sbjct: 254 RTKAMTEMNGVKCSSRAMRIGPATPRKT 281
Score = 135 (52.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 43/150 (28%), Positives = 68/150 (45%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK-------- 58
V+ D TGRS+G+ FV + + ++G + R +R+ + K
Sbjct: 231 VVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGY 290
Query: 59 LPLYAET-------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+P A T + +FVG L SVT E L Q F E+G +V ++ +G G
Sbjct: 291 MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV------GKGCG 344
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVS 141
FV + + E ALE LNG + + +R+S
Sbjct: 345 FVQFVNRPNAEEALEKLNGTVIGKQTVRLS 374
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 183 (69.5 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+G
Sbjct: 281 EQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFG 336
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 165 (63.1 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 42/143 (29%), Positives = 75/143 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 157 (60.3 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 41/136 (30%), Positives = 70/136 (51%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E IE ++G R + V F + + + L A +F
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L F ++G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG EL G+ + V AQ
Sbjct: 252 NGKELNGKQIYVGRAQ 267
Score = 112 (44.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 179 (68.1 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 40/133 (30%), Positives = 72/133 (54%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 122 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 176
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 177 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLN 236
Query: 130 GVELEGRAMRVSL 142
G + G A +++
Sbjct: 237 GQKPSGAAEPITV 249
Score = 118 (46.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 55 PKPKLPLYAETDFK--LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 112
P P + D K L V L ++T E F G + +++ D +G+S GYGF
Sbjct: 74 PSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 133
Query: 113 VCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
V Y + E A+ +LNG+ L+ + ++VS A+
Sbjct: 134 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 165
Score = 113 (44.8 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 317 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 376
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 377 DEAAMAIASLNGYRLGDRVLQVS 399
Score = 66 (28.3 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 205 ILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQK 258
Score = 37 (18.1 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 108 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 140
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 179 (68.1 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 41/148 (27%), Positives = 79/148 (53%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS-DKP---KPKLPLY 62
V+Y+R T RSRG+ +V I+ + G+E GR + + S KP + +
Sbjct: 199 VIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKF 258
Query: 63 AETDFK----LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+T + LF+GNLS++ +++ + F ++G VV R+ E+ + +G+G+V +S
Sbjct: 259 GDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNM 318
Query: 119 AEMETALESLNGVELEGRAMRVSLAQGR 146
+ + AL++L G ++ R +R+ + R
Sbjct: 319 EDAKKALDALQGEYIDNRPVRLDFSSPR 346
Score = 177 (67.4 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVG LSWS+ E L + F+ G V+GARV+Y+ + RSRGYG+V + K+ E A++ +
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 129 NGVELEGRAMRVSLAQGR 146
G E++GR + ++ +
Sbjct: 230 QGKEIDGRPINCDMSTSK 247
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 182 (69.1 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 49/151 (32%), Positives = 81/151 (53%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRIL-------RVNFSDKPKPKL 59
V+ D ++G SRGF FV ED + +++G+E GR+L RV ++ K +
Sbjct: 222 VMRD-DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRF 280
Query: 60 PLYAE---TDFK---LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV 113
+ T ++ L+V NL S+ E L + F YG + A+V+ +G G S+G+GFV
Sbjct: 281 EQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEG--GHSKGFGFV 338
Query: 114 CYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
C+S+ E A+ +NG + + + V+LAQ
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Score = 162 (62.1 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 43/134 (32%), Positives = 68/134 (50%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-KLFVG 72
SRGF FV T E I ++G R + V +F + + + L A +F ++V
Sbjct: 137 SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
NL V L F ++G ++ +V+ D +SG SRG+GFV + + + A+ +NG E
Sbjct: 197 NLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDMNGKE 255
Query: 133 LEGRAMRVSLAQGR 146
+ GR + V AQ R
Sbjct: 256 VSGRLLYVGRAQKR 269
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 39/143 (27%), Positives = 73/143 (51%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A++ D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRD-PGLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D + G SRG+GFV + T + A
Sbjct: 99 GN--VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-DHG-SRGFGFVHFETHEAAQNA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+ ++NG+ L R + V + RR
Sbjct: 155 IRTMNGMLLNDRKVFVGHFKSRR 177
Score = 109 (43.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G ++ RV D + RS GY ++ + A+ E AL+++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++G+ +R+ +Q
Sbjct: 73 NFEVIKGQPIRIMWSQ 88
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 178 (67.7 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 45/142 (31%), Positives = 76/142 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET----- 65
+T + + FV A + ++GR+ +G+ ++VN++ P K + T
Sbjct: 41 DTAGNDPYCFVEFYEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQ 100
Query: 66 ---D-FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
D F +FVG+LS +TTE + AF +G + ARV+ D +G+S+GYGFV + K +
Sbjct: 101 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 122 ETALESLNGVELEGRAMRVSLA 143
E A++ + G L GR +R + A
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWA 182
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 38/121 (31%), Positives = 66/121 (54%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 73 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 127
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 130 G 130
G
Sbjct: 188 G 188
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T E L F G + +++ D +G+S GYGFV Y + E A+ +L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 101 NGLRLQTKTIKVSYAR 116
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 182 (69.1 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 44/147 (29%), Positives = 79/147 (53%)
Query: 13 TGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNFSDKPKP 57
TG+S+GF FV+ ED N +E ++G++ ++GR L+ F +
Sbjct: 227 TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQE 286
Query: 58 KLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYST 117
++ Y + L++ NL ++ E L + F +G++ A+V+ E GRS+G+GFVC+S+
Sbjct: 287 RISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 118 KAEMETALESLNGVELEGRAMRVSLAQ 144
E A+ +NG + + + V+LAQ
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 155 (59.6 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 39/136 (28%), Positives = 72/136 (52%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+AFV T + + IE ++G R + V F + + + L A+ +F
Sbjct: 134 ENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L + F +YG + +V+ D +G+S+G+GFV + + A+E +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG ++ G+ + V AQ
Sbjct: 252 NGKDINGKMVFVGRAQ 267
Score = 155 (59.6 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 40/143 (27%), Positives = 74/143 (51%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GY FV + T+ + A
Sbjct: 99 GN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 109 (43.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 178 (67.7 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 45/142 (31%), Positives = 76/142 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET----- 65
+T + + FV A + ++GR+ +G+ ++VN++ P K + T
Sbjct: 41 DTAGNDPYCFVEFYEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQ 100
Query: 66 ---D-FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
D F +FVG+LS +TTE + AF +G + ARV+ D +G+S+GYGFV + K +
Sbjct: 101 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 122 ETALESLNGVELEGRAMRVSLA 143
E A++ + G L GR +R + A
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWA 182
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 177 (67.4 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 39/133 (29%), Positives = 74/133 (55%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV S D + I L+G + + ++V+++ +P + D L
Sbjct: 73 DKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA-RPSSA----SIRDANL 127
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L +++ + + Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 130 GVELEGRAMRVSL 142
G + G A +++
Sbjct: 188 GQKPLGAAEPITV 200
Score = 118 (46.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T + F G++ +++ D +G+S GYGFV YS + + A+ +L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 129 NGVELEGRAMRVSLAQ 144
NG++L+ + ++VS A+
Sbjct: 101 NGLKLQTKTIKVSYAR 116
Score = 110 (43.8 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FV NLS L Q F +G V +V+ D + + +G+GFV + E A+ SL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 129 NGVELEGRAMRVSLAQGRR 147
NG L R ++VS ++
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 72 (30.4 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ LG + V F++ P K
Sbjct: 156 ILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 40 (19.1 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53
F ++ +E C V + + G+ LG VN+SD
Sbjct: 59 FGSIGDIESCKLVRDKITGQS-LGYGF-VNYSD 89
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 177 (67.4 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 39/133 (29%), Positives = 74/133 (55%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV S D + I L+G + + ++V+++ +P + D L
Sbjct: 73 DKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA-RPSSA----SIRDANL 127
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L +++ + + Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 130 GVELEGRAMRVSL 142
G + G A +++
Sbjct: 188 GQKPLGAAEPITV 200
Score = 118 (46.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T + F G++ +++ D +G+S GYGFV YS + + A+ +L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 129 NGVELEGRAMRVSLAQ 144
NG++L+ + ++VS A+
Sbjct: 101 NGLKLQTKTIKVSYAR 116
Score = 110 (43.8 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FV NLS L Q F +G V +V+ D + + +G+GFV + E A+ SL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 129 NGVELEGRAMRVSLAQGRR 147
NG L R ++VS ++
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 72 (30.4 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ LG + V F++ P K
Sbjct: 156 ILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 40 (19.1 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53
F ++ +E C V + + G+ LG VN+SD
Sbjct: 59 FGSIGDIESCKLVRDKITGQS-LGYGF-VNYSD 89
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 180 (68.4 bits), Expect = 5.0e-13, P = 5.0e-13
Identities = 47/146 (32%), Positives = 78/146 (53%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN--FSDKPKPKLPLY 62
+ +L D+ +AF+ T E + + L+GR ++VN F P
Sbjct: 109 IKILNDKNKA-GFNYAFIEYDTNEVADMALNTLNGRLVDDVEIKVNWAFQSAAIAGNPNN 167
Query: 63 AETD-FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
E F +FVG+LS V E L AF ++ ++ A V++D ++ RSRGYGFV + +++
Sbjct: 168 TEEPLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDA 227
Query: 122 ETALESLNGVELEGRAMRVSLAQGRR 147
E AL+++NG L GRA+R + A ++
Sbjct: 228 ELALQTMNGEWLCGRAIRCNWASHKQ 253
Score = 95 (38.5 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52
L + V++D +T RSRG+ FVT D ++ ++G GR +R N++
Sbjct: 199 LKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWA 249
Score = 66 (28.3 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++GN++ + L Q +G +V D + RG FV Y T A+ L
Sbjct: 414 VYLGNIAHFTQQQELIPLLQNFGFIV------DFKFHPERGCAFVKYDTHERAALAIIQL 467
Query: 129 NGVELEGRAMRVSLAQGR 146
G L GR ++ + R
Sbjct: 468 AGFNLNGRPLKCGWGKER 485
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 181 (68.8 bits), Expect = 5.0e-13, P = 5.0e-13
Identities = 49/154 (31%), Positives = 82/154 (53%)
Query: 5 LTVLYDRE-TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------K 56
L+V R+ +G+S+GF FV+ ED N +E ++G+E G+ + V + K K
Sbjct: 147 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 206
Query: 57 PKLP-LYAET-----DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 110
K L E L++ NL ++ E L + F +G++ A+V+ E GRS+G+
Sbjct: 207 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGF 264
Query: 111 GFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
GFVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 265 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Score = 176 (67.0 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 44/136 (32%), Positives = 74/136 (54%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+AFV T E N IE ++G R + V F + + + L A+ +F
Sbjct: 63 ENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 121
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N V E+L + F ++G + +V+ D SG+S+G+GFV Y + A+E +
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 129 NGVELEGRAMRVSLAQ 144
NG E+ G+++ V AQ
Sbjct: 181 NGKEMSGKSIFVGRAQ 196
Score = 122 (48.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/104 (29%), Positives = 57/104 (54%)
Query: 44 GRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 103
G+ +R+ +S + P L + +F+ NL S+ ++L F +GN++ +V+ D E
Sbjct: 8 GKPIRIMWSQRD-PSLRKSGVGN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 63
Query: 104 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 147
+G S+GY FV + T+ A+E +NG+ L R + V + R+
Sbjct: 64 NG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRK 106
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 173 (66.0 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/81 (43%), Positives = 54/81 (66%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
K+FVG +S+S L +AF +YG VV A+++ D E+GRSRG+ FV +++ E A++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 128 LNGVELEGRAMRVSLAQGRRS 148
L+G +L GR +RV+ A R S
Sbjct: 94 LDGQDLHGRRIRVNYATERGS 114
Score = 122 (48.0 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52
++ DRETGRSRGFAFVT ++ E+ + ++ LDG++ GR +RVN++
Sbjct: 65 IIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYA 109
Score = 38 (18.4 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 91 GNVVGARVLYDGESGRSRGYG 111
GN VG Y G GYG
Sbjct: 186 GNAVGGGGGYGSNFGGGGGYG 206
Score = 37 (18.1 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 95 GARVLYDGESGRSRGYG 111
G Y G +G GYG
Sbjct: 150 GGNSSYSGNAGGGGGYG 166
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 178 (67.7 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 44/150 (29%), Positives = 82/150 (54%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRIL--RVNFSDKPKPKL 59
L + V+ ++ TG+ G+ F+ + ++ +G + G L R+N++ +
Sbjct: 50 LVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQ- 108
Query: 60 PLYAETDFKLFVGNLSWSVTTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+ A D +FVG+L+ VT L + F+ Y +V GA+V+ D +GRS+GYGFV ++ +
Sbjct: 109 KVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEE 168
Query: 119 AEMETALESLNGVELEGRAMRVSLAQGRRS 148
+E A+ +NG+ R MR+S A +++
Sbjct: 169 SERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Score = 112 (44.5 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L++G+L + V LT F + G +V +V+ + +G+ GYGF+ + + A E L++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 129 NGVELEGRAMRVSL 142
NG ++ G + L
Sbjct: 86 NGTQMPGTELTFRL 99
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLF+G LS+ T +SL +AF +YG + V+ D E+ RSRG+GFV + + + A+ +
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 128 LNGVELEGRAMRVSLA--QGRRS 148
+NG +++GR +RV A G RS
Sbjct: 84 MNGKQVDGRMIRVDEAGKSGGRS 106
Score = 112 (44.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
++K+ V+ DRET RSRGF FVT ED + ++G++ GR++RV+ + K
Sbjct: 49 IAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQVDGRMIRVDEAGK 101
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 43/136 (31%), Positives = 73/136 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+AFV T E + IE ++G R + V F + + + L A+ +F
Sbjct: 47 ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 105
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N V ESL + F ++G + +V+ D +G+S+G+GFV Y + A+E +
Sbjct: 106 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 164
Query: 129 NGVELEGRAMRVSLAQ 144
NG E+ G+ + V AQ
Sbjct: 165 NGKEISGKIIFVGRAQ 180
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 181 (68.8 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 49/154 (31%), Positives = 82/154 (53%)
Query: 5 LTVLYDRE-TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------K 56
L+V R+ +G+S+GF FV+ ED N +E ++G+E G+ + V + K K
Sbjct: 218 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 277
Query: 57 PKLP-LYAET-----DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 110
K L E L++ NL ++ E L + F +G++ A+V+ E GRS+G+
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGF 335
Query: 111 GFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
GFVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 44/136 (32%), Positives = 74/136 (54%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+AFV T E N IE ++G R + V F + + + L A+ +F
Sbjct: 134 ENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N V E+L + F ++G + +V+ D SG+S+G+GFV Y + A+E +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG E+ G+++ V AQ
Sbjct: 252 NGKEMSGKSIFVGRAQ 267
Score = 154 (59.3 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 40/143 (27%), Positives = 73/143 (51%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GY FV + T+ A
Sbjct: 99 GN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 178 (67.7 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 45/146 (30%), Positives = 76/146 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREY--LGRILRVNFSDKPKPKLPLYAE 64
V+ ++ G S G+ FV + + + V+ +G + R+N++ + L
Sbjct: 134 VIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENN 193
Query: 65 -TDFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
D +FVG+LS V+ L + F E Y +V A+V+ D +GRS+GYGFV + + E
Sbjct: 194 GPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERT 253
Query: 123 TALESLNGVELEGRAMRVSLAQGRRS 148
A+ +NGV+ RAMR+ A R++
Sbjct: 254 KAMTEMNGVKCSSRAMRIGPATPRKT 279
Score = 133 (51.9 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 43/150 (28%), Positives = 67/150 (44%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK-------- 58
V+ D TGRS+G+ FV + + ++G + R +R+ + K
Sbjct: 229 VVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGY 288
Query: 59 LP----LYAETDFK---LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+P E D +FVG L SVT E L Q F E+G +V ++ +G G
Sbjct: 289 MPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV------GKGCG 342
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVS 141
FV + + E ALE LNG + + +R+S
Sbjct: 343 FVQFVNRPNAEEALEKLNGTVIGKQTVRLS 372
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 181 (68.8 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 49/154 (31%), Positives = 82/154 (53%)
Query: 5 LTVLYDRE-TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------K 56
L+V R+ +G+S+GF FV+ ED N +E ++G+E G+ + V + K K
Sbjct: 218 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 277
Query: 57 PKLP-LYAET-----DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 110
K L E L++ NL ++ E L + F +G++ A+V+ E GRS+G+
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGF 335
Query: 111 GFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
GFVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 176 (67.0 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 44/136 (32%), Positives = 74/136 (54%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+AFV T E N IE ++G R + V F + + + L A+ +F
Sbjct: 134 ENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N V E+L + F ++G + +V+ D SG+S+G+GFV Y + A+E +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG E+ G+++ V AQ
Sbjct: 252 NGKEMSGKSIFVGRAQ 267
Score = 154 (59.3 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 40/143 (27%), Positives = 73/143 (51%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GY FV + T+ A
Sbjct: 99 GN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 110 (43.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 176 (67.0 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 39/133 (29%), Positives = 74/133 (55%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV S D + I L+G + + ++V+++ +P + D L
Sbjct: 73 DKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA-RPSSA----SIRDANL 127
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L +++ + + Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 130 GVELEGRAMRVSL 142
G + G A +++
Sbjct: 188 GQKPLGAAEPITV 200
Score = 118 (46.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T + F G++ +++ D +G+S GYGFV YS + + A+ +L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 129 NGVELEGRAMRVSLAQ 144
NG++L+ + ++VS A+
Sbjct: 101 NGLKLQTKTIKVSYAR 116
Score = 110 (43.8 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FV NLS L Q F +G V +V+ D + + +G+GFV + E A+ SL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 129 NGVELEGRAMRVSLAQGRR 147
NG L R ++VS ++
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 71 (30.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ LG + V F++ P K
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 40 (19.1 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53
F ++ +E C V + + G+ LG VN+SD
Sbjct: 59 FGSIGDIESCKLVRDKITGQS-LGYGF-VNYSD 89
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 176 (67.0 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 39/133 (29%), Positives = 74/133 (55%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV S D + I L+G + + ++V+++ +P + D L
Sbjct: 73 DKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA-RPSSA----SIRDANL 127
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L +++ + + Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 130 GVELEGRAMRVSL 142
G + G A +++
Sbjct: 188 GQKPLGAAEPITV 200
Score = 118 (46.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T + F G++ +++ D +G+S GYGFV YS + + A+ +L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 129 NGVELEGRAMRVSLAQ 144
NG++L+ + ++VS A+
Sbjct: 101 NGLKLQTKTIKVSYAR 116
Score = 110 (43.8 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FV NLS L Q F +G V +V+ D + + +G+GFV + E A+ SL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 129 NGVELEGRAMRVSLAQGRR 147
NG L R ++VS ++
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 71 (30.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ LG + V F++ P K
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 40 (19.1 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53
F ++ +E C V + + G+ LG VN+SD
Sbjct: 59 FGSIGDIESCKLVRDKITGQS-LGYGF-VNYSD 89
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 176 (67.0 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 39/133 (29%), Positives = 74/133 (55%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV S D + I L+G + + ++V+++ +P + D L
Sbjct: 73 DKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA-RPSSA----SIRDANL 127
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L +++ + + Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 130 GVELEGRAMRVSL 142
G + G A +++
Sbjct: 188 GQKPLGAAEPITV 200
Score = 118 (46.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T + F G++ +++ D +G+S GYGFV YS + + A+ +L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 129 NGVELEGRAMRVSLAQ 144
NG++L+ + ++VS A+
Sbjct: 101 NGLKLQTKTIKVSYAR 116
Score = 110 (43.8 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FV NLS L Q F +G V +V+ D + + +G+GFV + E A+ SL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 129 NGVELEGRAMRVSLAQGRR 147
NG L R ++VS ++
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 71 (30.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ LG + V F++ P K
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 40 (19.1 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53
F ++ +E C V + + G+ LG VN+SD
Sbjct: 59 FGSIGDIESCKLVRDKITGQS-LGYGF-VNYSD 89
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 173 (66.0 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 39/133 (29%), Positives = 76/133 (57%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+ G+S+G+AF+ ++ ED + + + RE GR +R+ P+ ++ LFV
Sbjct: 143 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG-PRGSPNARSQPSKTLFV 201
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
LS T E+L ++F G+V AR++ D E+G S+G+GFV ++++ + + A E++
Sbjct: 202 KGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 258
Query: 132 ELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 259 EIDGNKVTLDWAK 271
Score = 117 (46.2 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L + NLS+S T E+L + F++ + + ++G+S+GY F+ +++ + + AL S
Sbjct: 113 LVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSC 168
Query: 129 NGVELEGRAMRVSLAQGRR 147
N E+EGRA+R+ L QG R
Sbjct: 169 NKREIEGRAIRLEL-QGPR 186
Score = 57 (25.1 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52
G+S+G A++ T D E G E GR + + ++
Sbjct: 27 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYT 65
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 176 (67.0 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 39/133 (29%), Positives = 74/133 (55%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV S D + I L+G + + ++V+++ +P + D L
Sbjct: 73 DKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA-RPSSA----SIRDANL 127
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L +++ + + Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 130 GVELEGRAMRVSL 142
G + G A +++
Sbjct: 188 GQKPLGAAEPITV 200
Score = 118 (46.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T + F G++ +++ D +G+S GYGFV YS + + A+ +L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 129 NGVELEGRAMRVSLAQ 144
NG++L+ + ++VS A+
Sbjct: 101 NGLKLQTKTIKVSYAR 116
Score = 110 (43.8 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FV NLS L Q F +G V +V+ D + + +G+GFV + E A+ SL
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 129 NGVELEGRAMRVSLAQGRR 147
NG L R ++VS ++
Sbjct: 347 NGYRLGERVLQVSFKTSKQ 365
Score = 71 (30.1 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ LG + V F++ P K
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 40 (19.1 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53
F ++ +E C V + + G+ LG VN+SD
Sbjct: 59 FGSIGDIESCKLVRDKITGQS-LGYGF-VNYSD 89
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 178 (67.7 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 47/143 (32%), Positives = 75/143 (52%)
Query: 6 TVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYL-GRILRVNFSDKPKPKLPLYAE 64
T++ D TGRSRGF F+T ED +V L R L G+++ PK + +
Sbjct: 192 TIMKDSATGRSRGFGFLTF---EDAKSVDALLKDRHVLDGKLI------DPKRAISKEDQ 242
Query: 65 TDF-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 123
K+FVG + VT E F ++G ++ +++ D ++GRSRG+GFV Y + A ++
Sbjct: 243 EKVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDK 302
Query: 124 ALESLNGVELEGRAMRVSLAQGR 146
+ + L+G+AM V A R
Sbjct: 303 VCVN-KYLTLKGKAMEVKRAAPR 324
Score = 141 (54.7 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
K F+G LSW T E+L FQ+YGN+V ++ D +GRSRG+GF+ + ++ L+
Sbjct: 163 KCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLK 221
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLFVG L++ T ESL Q F +YG V V+ D ES RSRG+GFV + + + A+ +
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 128 LNGVELEGRAMRVSLAQGRRS 148
+NG ++GR +RV A G+ S
Sbjct: 67 MNGKSVDGRQIRVDQA-GKSS 86
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 179 (68.1 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 49/139 (35%), Positives = 72/139 (51%)
Query: 13 TGRSRGFAFVTMSTVEDCNAVIENLDG------REYLGRILRVNFSDKPKPKLPLYAETD 66
+G+S+G+ FV + E IE L+G + Y+G LR D K T
Sbjct: 160 SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANK------TK 213
Query: 67 F-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 125
F ++V NL+ S T + L AF EYG + A V+ DGE G+S+G+GFV + + A+
Sbjct: 214 FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAV 272
Query: 126 ESLNGVELEGRAMRVSLAQ 144
ESLNG + + + V AQ
Sbjct: 273 ESLNGHKFDDKEWYVGRAQ 291
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 47/158 (29%), Positives = 81/158 (51%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI--------- 46
++ V+ D E G+S+GF FV +D +E+L+G + Y+GR
Sbjct: 241 ITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETE 299
Query: 47 LRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR 106
LRV + K + ++ L+V NL S++ E L + F +G V ++V+ D +G
Sbjct: 300 LRVRYEQNLKEAADKFQSSN--LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGT 356
Query: 107 SRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
S+G GFV ++T E A+ L+G +E + + V++AQ
Sbjct: 357 SKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 394
Score = 172 (65.6 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 42/134 (31%), Positives = 71/134 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
V D T RS G+ +V + +D I+ L+ G+ +RV +S + P + +
Sbjct: 67 VCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRD-PSVRRSGAGN 125
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
+F+ NL S+ ++L F +GN+V +V D SG+S+GYGFV Y+ + + A+E
Sbjct: 126 --IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIE 182
Query: 127 SLNGVELEGRAMRV 140
LNG+ L + + V
Sbjct: 183 KLNGMLLNDKQVYV 196
Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L ++VT L AF + G VV RV D + RS GYG+V ++ + A++ L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 129 NGVELEGRAMRV 140
N + L G+ +RV
Sbjct: 98 NYIPLYGKPIRV 109
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 179 (68.1 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 47/151 (31%), Positives = 76/151 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------KPKL 59
V+ D +TGRSRGF FV E+ + ++G+E GR++ V + K K K
Sbjct: 222 VMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKF 280
Query: 60 PLYAETDFK------LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV 113
+ L+V NL + + L + F YG + A+V+ +G G S+G+GFV
Sbjct: 281 EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFV 338
Query: 114 CYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
C+S+ E A+ +NG + + + V+LAQ
Sbjct: 339 CFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 43/134 (32%), Positives = 72/134 (53%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-KLFVG 72
SRG+ FV T E N I+ ++G R + V +F + + +L A+ +F +++
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
N + + L + F +GN + +V+ D ++GRSRG+GFV Y E + A+ +NG E
Sbjct: 197 NFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKE 255
Query: 133 LEGRAMRVSLAQGR 146
+ GR + V AQ R
Sbjct: 256 VNGRMIYVGRAQKR 269
Score = 164 (62.8 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 42/146 (28%), Positives = 75/146 (51%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
+ + V D T RS G+A++ D ++ ++ GR +R+ +S + P L
Sbjct: 37 IMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRD-PGLRK 95
Query: 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
+ +F+ NL S+ ++L F +GN++ +V+ D E G SRGYGFV + T+
Sbjct: 96 SGVGN--VFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETQEAA 151
Query: 122 ETALESLNGVELEGRAMRVSLAQGRR 147
A++++NG+ L R + V + RR
Sbjct: 152 NRAIQTMNGMLLNDRKVFVGHFKSRR 177
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G ++ RV D + RS GY ++ + A+ E AL+++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++GR +R+ +Q
Sbjct: 73 NFEVIKGRPIRIMWSQ 88
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 155 (59.6 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
Identities = 26/91 (28%), Positives = 56/91 (61%)
Query: 53 DKPKPKL---PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRG 109
D PKP P+ ++++G+++W+VT + + F ++G V+ ++ + ++G+ +G
Sbjct: 752 DVPKPNESAPPVPINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKG 811
Query: 110 YGFVCYSTKAEMETALESLNGVELEGRAMRV 140
+GFV + K + A+ ++NG EL GR+++V
Sbjct: 812 FGFVDFELKKSADDAIATMNGFELLGRSIKV 842
Score = 115 (45.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
+++VG+L +S+T + + F +GN+ + D SG+S+GY F+ Y + AL+S
Sbjct: 589 RIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDA-SGKSKGYAFIEYDNQESAAKALQS 647
Query: 128 LNGVELEGRAMRVS 141
+ + GRA++V+
Sbjct: 648 MTNYVMCGRAIKVA 661
Score = 53 (23.7 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 13 TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV 49
+G+S+G+AF+ E ++++ GR ++V
Sbjct: 624 SGKSKGYAFIEYDNQESAAKALQSMTNYVMCGRAIKV 660
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 174 (66.3 bits), Expect = 9.3e-13, P = 9.3e-13
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 78 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 132
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 133 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 192
Query: 130 GVELEG 135
G + G
Sbjct: 193 GQKPSG 198
Score = 121 (47.7 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 55 PKPKLPLYAETDFK--LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 112
P P A D K L V L ++T E F G + +++ D +G+S GYGF
Sbjct: 30 PSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 89
Query: 113 VCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
V Y + E A+ +LNG+ L+ + ++VS A+
Sbjct: 90 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 121
Score = 113 (44.8 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 260 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 319
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 320 DEAAMAIASLNGYRLGDRVLQVS 342
Score = 65 (27.9 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 161 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 214
Score = 37 (18.1 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 64 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 96
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 179 (68.1 bits), Expect = 9.3e-13, P = 9.3e-13
Identities = 46/155 (29%), Positives = 82/155 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRV 49
+ V+ D ++G+S+GF FV+ ED ++ ++G+E Y+GR L+
Sbjct: 220 IRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKR 278
Query: 50 NFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRG 109
F + ++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G
Sbjct: 279 KFEQMKQDRMTRYQGVN--LYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG--GRSKG 334
Query: 110 YGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
+GFVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 167 (63.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 43/143 (30%), Positives = 74/143 (51%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ GR +R+ +S + P L
Sbjct: 40 IRVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETHEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 157 (60.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 40/136 (29%), Positives = 71/136 (52%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E IE ++G R + V F + + + + A +F
Sbjct: 134 ENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L + F +YG + RV+ D +SG+S+G+GFV + + + A++ +
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG E+ G+ + V AQ
Sbjct: 252 NGKEMNGKQVYVGRAQ 267
Score = 116 (45.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++GR +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQ 88
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 174 (66.3 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 80 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 134
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 130 GVELEG 135
G + G
Sbjct: 195 GQKPSG 200
Score = 121 (47.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 55 PKPKLPLYAETDFK--LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 112
P P A D K L V L ++T E F G + +++ D +G+S GYGF
Sbjct: 32 PSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 91
Query: 113 VCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
V Y + E A+ +LNG+ L+ + ++VS A+
Sbjct: 92 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 123
Score = 113 (44.8 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 275 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 334
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 335 DEAAMAIASLNGYRLGDRVLQVS 357
Score = 65 (27.9 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 163 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 216
Score = 37 (18.1 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 66 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 98
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 174 (66.3 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 80 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 134
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 130 GVELEG 135
G + G
Sbjct: 195 GQKPSG 200
Score = 121 (47.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 55 PKPKLPLYAETDFK--LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 112
P P A D K L V L ++T E F G + +++ D +G+S GYGF
Sbjct: 32 PSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 91
Query: 113 VCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
V Y + E A+ +LNG+ L+ + ++VS A+
Sbjct: 92 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 123
Score = 113 (44.8 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 275 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 334
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 335 DEAAMAIASLNGYRLGDRVLQVS 357
Score = 65 (27.9 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 163 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 216
Score = 37 (18.1 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 66 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 98
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 174 (66.3 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 85 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 139
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 130 GVELEG 135
G + G
Sbjct: 200 GQKPSG 205
Score = 122 (48.0 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 31/97 (31%), Positives = 49/97 (50%)
Query: 50 NFSDKPKPKLPLYAETDFK--LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRS 107
N + P P A D K L V L ++T E F G + +++ D +G+S
Sbjct: 32 NSRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 91
Query: 108 RGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
GYGFV Y + E A+ +LNG+ L+ + ++VS A+
Sbjct: 92 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 128
Score = 113 (44.8 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 280 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 339
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 340 DEAAMAIASLNGYRLGDRVLQVS 362
Score = 65 (27.9 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 168 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 221
Score = 37 (18.1 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 71 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 103
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 174 (66.3 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 85 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 139
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 130 GVELEG 135
G + G
Sbjct: 200 GQKPSG 205
Score = 118 (46.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 55 PKPKLPLYAETD---FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
P P + A TD L V L ++T E F G + +++ D +G+S GYG
Sbjct: 37 PSP-MQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 95
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FV Y + E A+ +LNG+ L+ + ++VS A+
Sbjct: 96 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 128
Score = 113 (44.8 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 280 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 339
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 340 DEAAMAIASLNGYRLGDRVLQVS 362
Score = 65 (27.9 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 168 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 221
Score = 37 (18.1 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 71 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 103
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 174 (66.3 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 73 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 127
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 130 GVELEG 135
G + G
Sbjct: 188 GQKPSG 193
Score = 121 (47.7 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 55 PKPKLPLYAETDFK--LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 112
P P A D K L V L ++T E F G + +++ D +G+S GYGF
Sbjct: 25 PSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 84
Query: 113 VCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
V Y + E A+ +LNG+ L+ + ++VS A+
Sbjct: 85 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116
Score = 113 (44.8 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 282 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 341
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 342 DEAAMAIASLNGYRLGDRVLQVS 364
Score = 65 (27.9 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 209
Score = 37 (18.1 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 59 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 91
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 174 (66.3 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 73 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 127
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
Query: 130 GVELEG 135
G + G
Sbjct: 188 GQKPSG 193
Score = 121 (47.7 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 55 PKPKLPLYAETDFK--LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 112
P P A D K L V L ++T E F G + +++ D +G+S GYGF
Sbjct: 25 PSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 84
Query: 113 VCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
V Y + E A+ +LNG+ L+ + ++VS A+
Sbjct: 85 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116
Score = 113 (44.8 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 282 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 341
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 342 DEAAMAIASLNGYRLGDRVLQVS 364
Score = 65 (27.9 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 209
Score = 37 (18.1 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 59 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 91
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 173 (66.0 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 73 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 127
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 130 GVELEG 135
G + G
Sbjct: 188 GQKPPG 193
Score = 121 (47.7 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T E L F G + +++ D +G+S GYGFV Y + E A+ +L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 101 NGLRLQTKTIKVSYAR 116
Score = 114 (45.2 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NL+ L Q F +G V +V+ D + + +G+GFV +
Sbjct: 255 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 314
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 315 DEAAMAIASLNGYRLGDRVLQVS 337
Score = 64 (27.6 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 156 ILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 37 (18.1 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 59 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 91
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 174 (66.3 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 80 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 134
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 130 GVELEG 135
G + G
Sbjct: 195 GQKPSG 200
Score = 121 (47.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 55 PKPKLPLYAETDFK--LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 112
P P A D K L V L ++T E F G + +++ D +G+S GYGF
Sbjct: 32 PSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 91
Query: 113 VCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
V Y + E A+ +LNG+ L+ + ++VS A+
Sbjct: 92 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 123
Score = 113 (44.8 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 289 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 348
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 349 DEAAMAIASLNGYRLGDRVLQVS 371
Score = 65 (27.9 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 163 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 216
Score = 37 (18.1 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 66 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 98
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 174 (66.3 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 80 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 134
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
Query: 130 GVELEG 135
G + G
Sbjct: 195 GQKPSG 200
Score = 118 (46.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 55 PKPKLPLYAETD---FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
P P + A TD L V L ++T E F G + +++ D +G+S GYG
Sbjct: 32 PSP-MQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 90
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FV Y + E A+ +LNG+ L+ + ++VS A+
Sbjct: 91 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 123
Score = 113 (44.8 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 289 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 348
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 349 DEAAMAIASLNGYRLGDRVLQVS 371
Score = 65 (27.9 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 163 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 216
Score = 37 (18.1 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 66 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 98
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 178 (67.7 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 44/134 (32%), Positives = 72/134 (53%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-KLFVG 72
SRG+ FV T E N I+ ++G R + V +F + + +L A+ +F +++
Sbjct: 137 SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
N + + L + F +GN + +V+ D +SGRSRG+GFV Y E + A+ +NG E
Sbjct: 197 NFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKE 255
Query: 133 LEGRAMRVSLAQGR 146
+ GR + V AQ R
Sbjct: 256 VNGRMIYVGRAQKR 269
Score = 173 (66.0 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 46/151 (30%), Positives = 76/151 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------KPKL 59
V+ D ++GRSRGF FV E+ + ++G+E GR++ V + K K K
Sbjct: 222 VMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKF 280
Query: 60 PLYAETDFK------LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV 113
+ L+V NL + + L + F YG + A+V+ +G G S+G+GFV
Sbjct: 281 EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFV 338
Query: 114 CYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
C+S+ E A+ +NG + + + V+LAQ
Sbjct: 339 CFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 41/146 (28%), Positives = 73/146 (50%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
+ + V D T RS +A++ D ++ ++ GR +R+ +S + P L
Sbjct: 37 IMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRD-PGLRK 95
Query: 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
+ +F+ NL S+ ++L F +GN++ +V+ D E G SRGYGFV + T
Sbjct: 96 SGVGN--VFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETHEAA 151
Query: 122 ETALESLNGVELEGRAMRVSLAQGRR 147
A++++NG+ L R + V + RR
Sbjct: 152 NRAIQTMNGMLLNDRKVFVGHFKSRR 177
Score = 105 (42.0 bits), Expect = 0.00040, P = 0.00040
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L++G+L VT L + F G ++ RV D + RS Y ++ + A+ E AL+++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++GR +R+ +Q
Sbjct: 73 NFEVIKGRPIRIMWSQ 88
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 174 (66.3 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 96 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 150
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 151 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 210
Query: 130 GVELEG 135
G + G
Sbjct: 211 GQKPSG 216
Score = 122 (48.0 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 43/144 (29%), Positives = 65/144 (45%)
Query: 7 VLYDRET--GRSRGFAFVTMSTVED--CNAVIENLDGREYLGRILRVNFSDKPKPKLPLY 62
VL RE SR +F+ +ST+E N N N + P P
Sbjct: 2 VLLLREIVINESRNCSFMIISTMEPQVSNGPTSNTSNGP------SSNNRNCPSPMQTGA 55
Query: 63 AETDFK--LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE 120
A D K L V L ++T E F G + +++ D +G+S GYGFV Y +
Sbjct: 56 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 115
Query: 121 METALESLNGVELEGRAMRVSLAQ 144
E A+ +LNG+ L+ + ++VS A+
Sbjct: 116 AEKAINTLNGLRLQTKTIKVSYAR 139
Score = 113 (44.8 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 291 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 350
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 351 DEAAMAIASLNGYRLGDRVLQVS 373
Score = 65 (27.9 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 179 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 232
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 174 (66.3 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 84 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 138
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 139 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 198
Query: 130 GVELEG 135
G + G
Sbjct: 199 GQKPSG 204
Score = 121 (47.7 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 55 PKPKLPLYAETDFK--LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 112
P P A D K L V L ++T E F G + +++ D +G+S GYGF
Sbjct: 36 PSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 95
Query: 113 VCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
V Y + E A+ +LNG+ L+ + ++VS A+
Sbjct: 96 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 127
Score = 113 (44.8 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 293 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 352
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 353 DEAAMAIASLNGYRLGDRVLQVS 375
Score = 65 (27.9 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 167 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 220
Score = 37 (18.1 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 70 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 102
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 174 (66.3 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 85 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 139
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 130 GVELEG 135
G + G
Sbjct: 200 GQKPSG 205
Score = 121 (47.7 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 55 PKPKLPLYAETDFK--LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 112
P P A D K L V L ++T E F G + +++ D +G+S GYGF
Sbjct: 37 PSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 96
Query: 113 VCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
V Y + E A+ +LNG+ L+ + ++VS A+
Sbjct: 97 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 128
Score = 113 (44.8 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 294 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 353
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 354 DEAAMAIASLNGYRLGDRVLQVS 376
Score = 65 (27.9 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 168 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 221
Score = 37 (18.1 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 71 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 103
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 174 (66.3 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 85 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 139
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
Query: 130 GVELEG 135
G + G
Sbjct: 200 GQKPSG 205
Score = 118 (46.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 55 PKPKLPLYAETD---FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
P P + A TD L V L ++T E F G + +++ D +G+S GYG
Sbjct: 37 PSP-MQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 95
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FV Y + E A+ +LNG+ L+ + ++VS A+
Sbjct: 96 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 128
Score = 113 (44.8 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 294 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 353
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 354 DEAAMAIASLNGYRLGDRVLQVS 376
Score = 65 (27.9 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 168 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 221
Score = 37 (18.1 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 71 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 103
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 174 (66.3 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 38/121 (31%), Positives = 66/121 (54%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 101 DKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 155
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 156 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLN 215
Query: 130 G 130
G
Sbjct: 216 G 216
Score = 124 (48.7 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L S+T E L F G + +++ D +G+S GYGFV Y + E A+ +L
Sbjct: 69 LIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTL 128
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 129 NGLRLQTKTIKVSYAR 144
Score = 119 (46.9 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P +A T + +FV NL+ L Q F +G V +V+ D + + +G+GFV +
Sbjct: 297 IPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 356
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 357 DEAAMAIASLNGYRLGDRVLQVS 379
Score = 60 (26.2 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ + V F++ P K
Sbjct: 184 ILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFANNPSQK 237
Score = 37 (18.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 87 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYVD-PK 119
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 173 (66.0 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 73 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 127
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 130 GVELEG 135
G + G
Sbjct: 188 GQKPPG 193
Score = 121 (47.7 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T E L F G + +++ D +G+S GYGFV Y + E A+ +L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 101 NGLRLQTKTIKVSYAR 116
Score = 114 (45.2 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NL+ L Q F +G V +V+ D + + +G+GFV +
Sbjct: 268 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 327
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 328 DEAAMAIASLNGYRLGDRVLQVS 350
Score = 64 (27.6 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 156 ILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 37 (18.1 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 59 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 91
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 173 (66.0 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 73 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 127
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 130 GVELEG 135
G + G
Sbjct: 188 GQKPPG 193
Score = 115 (45.5 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 74 LSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 133
L ++T E L F G + +++ D +G+S GYGFV Y + E A+ +LNG+ L
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 134 EGRAMRVSLAQ 144
+ + ++VS A+
Sbjct: 106 QTKTIKVSYAR 116
Score = 114 (45.2 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NL+ L Q F +G V +V+ D + + +G+GFV +
Sbjct: 268 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 327
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 328 DEAAMAIASLNGYRLGDRVLQVS 350
Score = 64 (27.6 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 156 ILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 37 (18.1 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 59 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 91
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 173 (66.0 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 73 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 127
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 130 GVELEG 135
G + G
Sbjct: 188 GQKPPG 193
Score = 115 (45.5 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 74 LSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 133
L ++T E L F G + +++ D +G+S GYGFV Y + E A+ +LNG+ L
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 134 EGRAMRVSLAQ 144
+ + ++VS A+
Sbjct: 106 QTKTIKVSYAR 116
Score = 114 (45.2 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NL+ L Q F +G V +V+ D + + +G+GFV +
Sbjct: 268 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 327
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 328 DEAAMAIASLNGYRLGDRVLQVS 350
Score = 64 (27.6 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 156 ILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 37 (18.1 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 59 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 91
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 173 (66.0 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 73 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 127
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Query: 130 GVELEG 135
G + G
Sbjct: 188 GQKPPG 193
Score = 121 (47.7 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T E L F G + +++ D +G+S GYGFV Y + E A+ +L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 101 NGLRLQTKTIKVSYAR 116
Score = 114 (45.2 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NL+ L Q F +G V +V+ D + + +G+GFV +
Sbjct: 269 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 328
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 329 DEAAMAIASLNGYRLGDRVLQVS 351
Score = 64 (27.6 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 156 ILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 37 (18.1 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 59 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 91
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 178 (67.7 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 43/136 (31%), Positives = 74/136 (54%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK----- 68
GR +G+AFV T ED + + + E GR +R+ FS K + A F
Sbjct: 493 GRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKT 552
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
LFV LS T E+L ++F+ G++ AR++ D ++G S+G+GFV +S+ + + A E++
Sbjct: 553 LFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 609
Query: 129 NGVELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 610 EDGEIDGNKVTLDFAK 625
Score = 153 (58.9 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 44/139 (31%), Positives = 76/139 (54%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYA---ETDFK-L 69
G S+ F +V + ED + ++ L+G++ +G +++ +K K K L E D + L
Sbjct: 316 GSSKRFGYVDFLSAEDMDKALQ-LNGKKLMGLEIKL---EKAKSKESLKENKKERDARTL 371
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
FV NL + VT + + F+ N + R++ + E G S+G ++ + T+AE E ALE
Sbjct: 372 FVKNLPYRVTEDEMKNVFE---NALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQ 427
Query: 130 GVELEGRAMRVSLAQGRRS 148
G E++GRAM + G +S
Sbjct: 428 GTEVDGRAMVIDYT-GEKS 445
Score = 152 (58.6 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 39/143 (27%), Positives = 77/143 (53%)
Query: 4 KLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS-DKPKPKLPLY 62
++ ++ ++E G S+G A++ T + +E G E GR + ++++ +K + +
Sbjct: 394 EVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKG 452
Query: 63 A-ETDFK-LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE 120
E + K L V NLS++ + E+L + F++ ++ + GR +GY FV + T +
Sbjct: 453 GGERESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAED 508
Query: 121 METALESLNGVELEGRAMRVSLA 143
+ AL S N E+EGRA+R+ +
Sbjct: 509 AKEALNSCNNTEIEGRAIRLEFS 531
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 178 (67.7 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 43/136 (31%), Positives = 74/136 (54%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK----- 68
GR +G+AFV T ED + + + E GR +R+ FS K + A F
Sbjct: 495 GRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKT 554
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
LFV LS T E+L ++F+ G++ AR++ D ++G S+G+GFV +S+ + + A E++
Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Query: 129 NGVELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 612 EDGEIDGNKVTLDFAK 627
Score = 153 (58.9 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 44/139 (31%), Positives = 76/139 (54%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYA---ETDFK-L 69
G S+ F +V + ED + ++ L+G++ +G +++ +K K K L E D + L
Sbjct: 318 GSSKRFGYVDFLSAEDMDKALQ-LNGKKLMGLEIKL---EKAKSKESLKENKKERDARTL 373
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
FV NL + VT + + F+ N + R++ + E G S+G ++ + T+AE E ALE
Sbjct: 374 FVKNLPYRVTEDEMKNVFE---NALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQ 429
Query: 130 GVELEGRAMRVSLAQGRRS 148
G E++GRAM + G +S
Sbjct: 430 GTEVDGRAMVIDYT-GEKS 447
Score = 152 (58.6 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 39/143 (27%), Positives = 77/143 (53%)
Query: 4 KLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS-DKPKPKLPLY 62
++ ++ ++E G S+G A++ T + +E G E GR + ++++ +K + +
Sbjct: 396 EVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKG 454
Query: 63 A-ETDFK-LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE 120
E + K L V NLS++ + E+L + F++ ++ + GR +GY FV + T +
Sbjct: 455 GGERESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAED 510
Query: 121 METALESLNGVELEGRAMRVSLA 143
+ AL S N E+EGRA+R+ +
Sbjct: 511 AKEALNSCNNTEIEGRAIRLEFS 533
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 178 (67.7 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 43/136 (31%), Positives = 74/136 (54%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK----- 68
GR +G+AFV T ED + + + E GR +R+ FS K + A F
Sbjct: 495 GRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKT 554
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
LFV LS T E+L ++F+ G++ AR++ D ++G S+G+GFV +S+ + + A E++
Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Query: 129 NGVELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 612 EDGEIDGNKVTLDFAK 627
Score = 153 (58.9 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 44/139 (31%), Positives = 76/139 (54%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYA---ETDFK-L 69
G S+ F +V + ED + ++ L+G++ +G +++ +K K K L E D + L
Sbjct: 318 GSSKRFGYVDFLSAEDMDKALQ-LNGKKLMGLEIKL---EKAKSKESLKENKKERDARTL 373
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
FV NL + VT + + F+ N + R++ + E G S+G ++ + T+AE E ALE
Sbjct: 374 FVKNLPYRVTEDEMKNVFE---NALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQ 429
Query: 130 GVELEGRAMRVSLAQGRRS 148
G E++GRAM + G +S
Sbjct: 430 GTEVDGRAMVIDYT-GEKS 447
Score = 152 (58.6 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 39/143 (27%), Positives = 77/143 (53%)
Query: 4 KLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS-DKPKPKLPLY 62
++ ++ ++E G S+G A++ T + +E G E GR + ++++ +K + +
Sbjct: 396 EVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKG 454
Query: 63 A-ETDFK-LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE 120
E + K L V NLS++ + E+L + F++ ++ + GR +GY FV + T +
Sbjct: 455 GGERESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAED 510
Query: 121 METALESLNGVELEGRAMRVSLA 143
+ AL S N E+EGRA+R+ +
Sbjct: 511 AKEALNSCNNTEIEGRAIRLEFS 533
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 172 (65.6 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 38/136 (27%), Positives = 71/136 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
++ D+ G S G+ FV D I L+G + ++V+++ +P + D
Sbjct: 65 LIRDKVAGHSLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYA-RPSSD----SIKD 119
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L++ L ++T + + + F YG ++ +RVL D SG SRG F+ + +AE E A++
Sbjct: 120 ANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIK 179
Query: 127 SLNGVELEGRAMRVSL 142
LNG + G A ++++
Sbjct: 180 DLNGQKPPGAAEQMTV 195
Score = 124 (48.7 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L +++ + L F G V A+++ D +G S GYGFV Y + E A+ +L
Sbjct: 36 LIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTL 95
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 96 NGLRLQSKTIKVSYAR 111
Score = 102 (41.0 bits), Expect = 0.00062, P = 0.00062
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + + + +F+ NL L Q F +G V +V+ D + + +G+GFV +
Sbjct: 250 VPGNSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHY 309
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L + ++VS
Sbjct: 310 EEAAMAIASLNGYRLGDKILQVS 332
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLF+G L+W T + L + F YG + A V+ D ++ RSRG+GFV ++++ E + A+ +
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 128 LNGVELEGRAMRVSLAQGR 146
+N E +GR +RV A R
Sbjct: 63 MNNQEFDGRIIRVDKASER 81
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 20/55 (36%), Positives = 37/55 (67%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKP 55
+ + V+ DR+T RSRGF FV ++ + +A + ++ +E+ GRI+RV+ S++P
Sbjct: 28 IEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEFDGRIIRVDKASERP 82
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 33/81 (40%), Positives = 53/81 (65%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLF+G LS+ T + L++AF + G VV A+++ D S RS+G+GFV +++ E + AL
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 128 LNGVELEGRAMRVSLAQGRRS 148
NG +L GR + V A+ ++S
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQS 115
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 174 (66.3 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 45/144 (31%), Positives = 71/144 (49%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIEN----LDGREYLGRILRVNFSDKPKPKLPLY 62
V+ + E+GRSRGF FVT + + N V++N LDGR + KPK
Sbjct: 38 VMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKG---- 93
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
+K+F+G L +VT L F YG V ++YD E +SRG+GF+ + ++ +E
Sbjct: 94 --GGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
Query: 123 TALESLNGVELEGRAMRVSLAQGR 146
+ L G+ + + A+ R
Sbjct: 152 HVTNE-RYINLNGKQVEIKKAEPR 174
Score = 146 (56.5 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLFVG LSW T E+L++ F +G+++ V+ + ESGRSRG+GFV ++ + L+
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ- 66
Query: 128 LNGVE-LEGRAM 138
NG L+GR +
Sbjct: 67 -NGPHTLDGRTI 77
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 47/153 (30%), Positives = 78/153 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNF 51
V+ D TGRS+GF FV E+ + +++G+E Y+GR L+ F
Sbjct: 222 VMMDH-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKF 280
Query: 52 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 111
+ ++ Y + L+V NL + E L + F YG + A+V+ +G G S+G+G
Sbjct: 281 EQMKQERVSRYQGVN--LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG--GHSKGFG 336
Query: 112 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
FVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 39/143 (27%), Positives = 75/143 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D + RS G+A++ D ++ ++ GR +R+ +S + P L
Sbjct: 40 IRVCRDVASRRSLGYAYINFQQPADAERALDTMNFEVIKGRPVRIMWSQRD-PGLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G SRG+GFV + T+ A
Sbjct: 99 GN--VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCD-ENG-SRGHGFVHFETQEAATRA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
++++NG+ L R + V + R+
Sbjct: 155 IQTMNGMLLNDRKVFVGHFKSRK 177
Score = 147 (56.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 40/138 (28%), Positives = 67/138 (48%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-K 68
E G SRG FV T E I+ ++G R + V +F + + + A +F
Sbjct: 134 ENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + L + F +G + +V+ D +GRS+G+GFV + E + A+ +
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 129 NGVELEGRAMRVSLAQGR 146
NG E+ GR + V AQ R
Sbjct: 252 NGKEINGRMVYVGRAQKR 269
Score = 116 (45.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G ++ RV D S RS GY ++ + A+ E AL+++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++GR +R+ +Q
Sbjct: 73 NFEVIKGRPVRIMWSQ 88
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 174 (66.3 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 40/125 (32%), Positives = 69/125 (55%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV I +L+GR G+ ++VN++ + + F +FVG+LS V
Sbjct: 98 YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQRED--TSSHFNIFVGDLSPEV 155
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
T +L Q+F + + ARV++D ++GRSRG+GFV + + + +TA+ +NG L R +
Sbjct: 156 TDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQI 215
Query: 139 RVSLA 143
R + A
Sbjct: 216 RCNWA 220
Score = 99 (39.9 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 3 SKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
S V++D++TGRSRGF FV+ +D I ++G+ R +R N++ K
Sbjct: 171 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATK 222
Score = 79 (32.9 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
++VGNL+ VT L Y + +GA V+ + R +G+GFV Y+T E A++
Sbjct: 267 VYVGNLAPEVTQLDL----HRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMG 322
Query: 129 N 129
N
Sbjct: 323 N 323
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 174 (66.3 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 51/142 (35%), Positives = 73/142 (51%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP-------KLPLYAETD 66
G RG V + E I DG ++ R L V D P P K E D
Sbjct: 158 GHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVR-QDNPPPEAAKEFSKKATREEID 216
Query: 67 --FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
F++F+ NL +S+ +SL F+E G+V+ A V D +G SRG+G V Y T+ EM A
Sbjct: 217 NGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDF-NGFSRGFGSVIYPTEDEMIRA 275
Query: 125 LESLNGVELEGRAMRVSLAQGR 146
+++ NG+E+EGR + V +GR
Sbjct: 276 IDTFNGMEVEGRVLEVR--EGR 295
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 173 (66.0 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 101 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 155
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 156 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 215
Query: 130 GVELEG 135
G + G
Sbjct: 216 GQKPPG 221
Score = 121 (47.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T E L F G + +++ D +G+S GYGFV Y + E A+ +L
Sbjct: 69 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 128
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 129 NGLRLQTKTIKVSYAR 144
Score = 114 (45.2 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NL+ L Q F +G V +V+ D + + +G+GFV +
Sbjct: 296 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 355
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 356 DEAAMAIASLNGYRLGDRVLQVS 378
Score = 64 (27.6 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 184 ILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 237
Score = 37 (18.1 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 87 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 119
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 173 (66.0 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 102 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 156
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 157 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 216
Query: 130 GVELEG 135
G + G
Sbjct: 217 GQKPPG 222
Score = 121 (47.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T E L F G + +++ D +G+S GYGFV Y + E A+ +L
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 130 NGLRLQTKTIKVSYAR 145
Score = 114 (45.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NL+ L Q F +G V +V+ D + + +G+GFV +
Sbjct: 297 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 356
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 357 DEAAMAIASLNGYRLGDRVLQVS 379
Score = 64 (27.6 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 185 ILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 238
Score = 37 (18.1 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 88 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 120
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 173 (66.0 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 102 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 156
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 157 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 216
Query: 130 GVELEG 135
G + G
Sbjct: 217 GQKPPG 222
Score = 121 (47.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T E L F G + +++ D +G+S GYGFV Y + E A+ +L
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 130 NGLRLQTKTIKVSYAR 145
Score = 110 (43.8 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P + T + +FV NL+ L Q F +G V +V+ D + + +G+GFV +
Sbjct: 298 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 357
Query: 119 AEMETALESLNGVELEGRAMRV 140
E A+ SLNG L R ++V
Sbjct: 358 DEAAMAIASLNGYRLGDRVLQV 379
Score = 64 (27.6 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 185 ILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 238
Score = 37 (18.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ D PK
Sbjct: 88 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYID-PK 120
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 177 (67.4 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 48/149 (32%), Positives = 76/149 (51%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS----------DKPK 56
V+ + ETG +RG+ FVT S +ED + L ++ GRILR++F+ D+ K
Sbjct: 36 VVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNK 95
Query: 57 P-KLPLYAETDFKLFVGNLSWSVTT-ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVC 114
K + + +L + NL WS+ + L F ++G V ++ G GR G+ FV
Sbjct: 96 AVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKG-GGRMCGFAFVW 154
Query: 115 YSTKAEMETALESLNGVELEGRAMRVSLA 143
+ E A+ SLNG E++GR + V A
Sbjct: 155 MKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
LFV NL++ + LT F + G + A V+ + E+G +RGYGFV +S + + A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 129 NGVELEGRAMRVSLAQGRR 147
+L GR +R+ A R+
Sbjct: 67 KNKKLHGRILRLDFATPRK 85
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 172 (65.6 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 38/133 (28%), Positives = 76/133 (57%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+ G+S+G+AF+ ++ ED + + + RE GR +R+ P+ ++ LFV
Sbjct: 172 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG-PRGSPNARSQPSKTLFV 230
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
LS T E+L ++F G++ AR++ D E+G S+G+GFV ++++ + + A E++
Sbjct: 231 KGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 287
Query: 132 ELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 288 EIDGNKVTLDWAK 300
Score = 145 (56.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 40/141 (28%), Positives = 75/141 (53%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS-DKPKP------KLPLYAETD 66
G+S+G A++ T D +E G E GR + + ++ +K + K ++
Sbjct: 80 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGES 139
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L + NL++S T E+L + F++ + + ++G+S+GY F+ +++ + + AL
Sbjct: 140 KTLVLSNLAYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALN 195
Query: 127 SLNGVELEGRAMRVSLAQGRR 147
S N E+EGRA+R+ L QG R
Sbjct: 196 SCNKREIEGRAIRLEL-QGPR 215
Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/123 (28%), Positives = 64/123 (52%)
Query: 17 RGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK-LFVGNLS 75
R F +V + ED +E L G + G +++ +KPK K + D + L NL
Sbjct: 1 RKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL---EKPKGK-DSKKDRDARTLLAKNLP 55
Query: 76 WSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG 135
+ VT + L + F++ V R++ + G+S+G ++ + T+A+ E LE G E++G
Sbjct: 56 YKVTQDELKEVFED---AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDG 110
Query: 136 RAM 138
R++
Sbjct: 111 RSI 113
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 172 (65.6 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 48/144 (33%), Positives = 73/144 (50%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDC-NAVIENLDGREYLG-RILRVNFSDKPKPKL 59
L V+ DR TGRSRGF +VT ++ ED NA L G +LG RIL V + PK ++
Sbjct: 29 LEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA----LKGEHFLGNRILEVKVAT-PKEEM 83
Query: 60 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
A+ ++FV + SV+ F+ YG + + D S + RG GF+ +S+
Sbjct: 84 RQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSAD 143
Query: 120 EMETALESLNGVELEGRAMRVSLA 143
+E +E + +L G + V A
Sbjct: 144 SVEDLMEDTH--DLGGTTVAVDRA 165
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 44/134 (32%), Positives = 71/134 (52%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-KLFVG 72
SRG+ FV T E N I+ ++G R + V +F + + +L A+ +F +++
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
N + + L + F +GN + +V+ D SGRSRG+GFV Y E + A+ +NG E
Sbjct: 197 NFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKE 255
Query: 133 LEGRAMRVSLAQGR 146
+ GR + V AQ R
Sbjct: 256 VNGRMVYVGRAQKR 269
Score = 167 (63.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 45/151 (29%), Positives = 74/151 (49%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------KPKL 59
V+ D +GRSRGF FV E+ + ++G+E GR++ V + K K K
Sbjct: 222 VMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKF 280
Query: 60 PLYAETDFK------LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV 113
+ L+V NL + + L + F YG + +V+ +G G S+G+GFV
Sbjct: 281 EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFV 338
Query: 114 CYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
C+S+ E A+ +NG + + + V+LAQ
Sbjct: 339 CFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Score = 157 (60.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 41/146 (28%), Positives = 75/146 (51%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
+ + V D T RS G+A++ D ++ ++ GR +R+ +S + P L
Sbjct: 37 IMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRD-PGLRK 95
Query: 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
+ +F+ NL S+ ++L F +G+++ +V+ D E G SRGYGFV + T+
Sbjct: 96 SGVGN--VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCD-EYG-SRGYGFVHFETQEAA 151
Query: 122 ETALESLNGVELEGRAMRVSLAQGRR 147
A++++NG+ L R + V + RR
Sbjct: 152 NRAIQTMNGMLLNDRKVFVGHFKSRR 177
Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L++G+L VT L + F G ++ RV D + RS GY ++ + A+ E AL+++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++GR +R+ +Q
Sbjct: 73 NFEVIKGRPIRIMWSQ 88
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 172 (65.6 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 43/146 (29%), Positives = 76/146 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLG--RILRVNFSDKPKPKLPLYAE 64
V+ ++ TG+S G+ F+ + V++ +G + R+N++ + E
Sbjct: 91 VIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTE 150
Query: 65 -TDFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
D +FVG+L+ VT L+ F+ YG+V GA+V+ D +GRS+GYGFV ++ + E
Sbjct: 151 GPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQM 210
Query: 123 TALESLNGVELEGRAMRVSLAQGRRS 148
A+ +NG R MR+ A + +
Sbjct: 211 RAMTEMNGQYCSTRPMRIGPAANKNA 236
Score = 136 (52.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 43/149 (28%), Positives = 73/149 (48%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN--FSDKPKPKLP-LYA 63
V+ DR TGRS+G+ FV + + + ++G+ R +R+ + P P +Y
Sbjct: 186 VVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQ 245
Query: 64 ET-----------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 112
T + +FVG L +VT + L F ++G ++ ++ G+ GF
Sbjct: 246 NTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI----PPGKR--CGF 299
Query: 113 VCYSTKAEMETALESLNGVELEGRAMRVS 141
V Y+ KA E AL LNG +L G+++R+S
Sbjct: 300 VQYANKASAEHALSVLNGTQLGGQSIRLS 328
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 176 (67.0 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 46/156 (29%), Positives = 79/156 (50%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK--- 58
++ L+++ D + + RGF FV + E ++ L+ +EY G+ L V + K +
Sbjct: 287 ITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEE 345
Query: 59 -------LPLYAETDFK---LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSR 108
+ L ++ LF+ NL V E L F +G + A+++ D E G+S+
Sbjct: 346 LRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSK 404
Query: 109 GYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
G+GFVCY+T E A+ +N L G+ + V+LAQ
Sbjct: 405 GFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Score = 155 (59.6 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 40/146 (27%), Positives = 72/146 (49%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
++ + V D T RS G+A+V +ED ++ L+ GR R+ +S + P L
Sbjct: 106 VASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRD-PSLRK 164
Query: 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
+ +F+ NL ++ ++L F +G ++ +V D E G ++GYGFV + +
Sbjct: 165 MGTGN--VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESA 221
Query: 122 ETALESLNGVELEGRAMRVSLAQGRR 147
A+E +NG+ L + + V RR
Sbjct: 222 NAAIEHVNGMLLNDKKVYVGHHVSRR 247
Score = 148 (57.2 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 36/139 (25%), Positives = 72/139 (51%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDG------REYLGRILRVNFSDKPKPKLPLYAET 65
E G ++G+ FV +VE NA IE+++G + Y+G V+ ++ + K+
Sbjct: 203 ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH--HVSRRER-QSKVEALKAN 259
Query: 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 125
+++ NL +T + + F ++G + ++ D ++ + RG+GFV Y+ + A+
Sbjct: 260 FTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAV 318
Query: 126 ESLNGVELEGRAMRVSLAQ 144
+ LN E +G+ + V AQ
Sbjct: 319 DELNDKEYKGKKLYVGRAQ 337
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A T L+VG L SVT L + F G V RV D + RS GY +V + + E
Sbjct: 76 APTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGE 135
Query: 123 TALESLNGVELEGRAMRVSLAQ 144
AL+ LN ++GR R+ +Q
Sbjct: 136 KALDELNYTLIKGRPCRIMWSQ 157
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 171 (65.3 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 42/146 (28%), Positives = 79/146 (54%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIEN---LDGREY-LGRILRVNFSDKPKPKLPLY 62
++ DR TG+ RGF F+T + + VIE+ ++G++ + R + +
Sbjct: 50 IMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDI--- 106
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
+T K+FVG + +VT + L F +YGNVV +V+ D E+ RSRG+GFV + ++ ++
Sbjct: 107 -KTK-KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVD 164
Query: 123 TALESLNGVELEGRAMRVSLAQGRRS 148
L N +++ + + A+ ++S
Sbjct: 165 ELLSKGNMIDMADTQVEIKKAEPKKS 190
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLF+G LS+ T +SL AF +YG + V + E+ RSRG+GFV + + + ALE
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 128 LNGVELEGRAMRVSLA 143
+NG ++GR +RV A
Sbjct: 66 MNGKSVDGRTIRVDEA 81
Score = 102 (41.0 bits), Expect = 0.00014, P = 0.00014
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
+++ + V +RET RSRGF FVT +D +E ++G+ GR +RV+ + K
Sbjct: 30 VITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGMNGKSVDGRTIRVDEAGK 83
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 174 (66.3 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 51/155 (32%), Positives = 84/155 (54%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRILRVNFS-DK 54
+S + V+ D GRSRGF FV E+ +E+L G + ++G+ L+ + +
Sbjct: 228 VSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREM 286
Query: 55 PKPKLP--LYAETDFK---LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRG 109
K K A+ + + L+V NLS S+ L + F YG +V A+V+ E+GRS+G
Sbjct: 287 LKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKG 345
Query: 110 YGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
+GFVC+S E + A LNG ++G+ + V +A+
Sbjct: 346 FGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAE 380
Score = 160 (61.4 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 44/133 (33%), Positives = 66/133 (49%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAETDFKLF 70
E G+S+GF FV T + + L G G+ L V F +K + + ++
Sbjct: 146 ENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVY 205
Query: 71 VGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG 130
V NL +VT + L F +YG V V+ DG GRSRG+GFV + + A+ESL G
Sbjct: 206 VKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESLCG 264
Query: 131 VELEGRAMRVSLA 143
++L + + V A
Sbjct: 265 LQLGSKKLFVGKA 277
Score = 133 (51.9 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 33/130 (25%), Positives = 70/130 (53%)
Query: 13 TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDF-KLFV 71
TG+S +A++ + + + L+ + G+ +R+ +S + T F L+V
Sbjct: 58 TGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLA-YRRRTRTGFANLYV 116
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
NL S+T+ L + F +G+++ +V+ E+G+S+G+GFV + T+ +A +L+G
Sbjct: 117 KNLDSSITSSCLERMFCPFGSILSCKVVE--ENGQSKGFGFVQFDTEQSAVSARSALHGS 174
Query: 132 ELEGRAMRVS 141
+ G+ + V+
Sbjct: 175 MVYGKKLFVA 184
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 172 (65.6 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 41/144 (28%), Positives = 78/144 (54%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
++ DR+TG+ RGF FVT + + VI+ D +G+ + + + P+ + + D
Sbjct: 73 IMKDRKTGQPRGFGFVTYADSSVVDKVIQ--DNHIIIGKQVEIKRTI-PRGSM---SSND 126
Query: 67 FK---LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 123
FK +FVG + SV + + F ++G + +++ D +GRSRG+GFV Y ++ ++
Sbjct: 127 FKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDH 186
Query: 124 ALESLNGVELEGRAMRVSLAQGRR 147
L N +EL G + + A+ ++
Sbjct: 187 LLAKGNRIELSGTQVEIKKAEPKK 210
Score = 106 (42.4 bits), Expect = 0.00014, P = 0.00014
Identities = 20/74 (27%), Positives = 42/74 (56%)
Query: 53 DKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 112
DK +P ++ K+FVG L+ T+ + F +YG + + ++ D ++G+ RG+GF
Sbjct: 28 DKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGF 87
Query: 113 VCYSTKAEMETALE 126
V Y+ + ++ ++
Sbjct: 88 VTYADSSVVDKVIQ 101
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 175 (66.7 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 46/151 (30%), Positives = 82/151 (54%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------KPKL 59
V+ D + G+SRGF FV+ ED +++++G++ G+ + V + K K K
Sbjct: 222 VMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKF 280
Query: 60 PLYAE---TDFK---LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV 113
+ T ++ L+V NL + E L + F +G++ A+V+ +G GRS+G+GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFV 338
Query: 114 CYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
C+S+ E A+ +NG + + + V+LAQ
Sbjct: 339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 162 (62.1 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 41/143 (28%), Positives = 75/143 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
++ +NG+ L R + V + R+
Sbjct: 155 IDKMNGMLLNDRKVFVGRFKSRK 177
Score = 155 (59.6 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 40/136 (29%), Positives = 71/136 (52%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E I+ ++G R + V F + + + L A +F
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L + F +YG + +V+ D + G+SRG+GFV + + + A++ +
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG +L G+A+ V AQ
Sbjct: 252 NGKDLNGKAIFVGRAQ 267
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 174 (66.3 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 45/149 (30%), Positives = 75/149 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
++ DR +GRS+G +V I+ L G++ LG + ++ K + +E
Sbjct: 205 IVKDRVSGRSKGVGYVEFKDESSVAPAIQ-LTGQKLLGIPIIAQLTEAEKNRQARNSEAS 263
Query: 67 ---------FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYST 117
+L+VGN+ +S+ L F+ +G + ++ D E+GRSRGYGFV +
Sbjct: 264 SGNKHSAPFHRLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKD-ETGRSRGYGFVQFRD 322
Query: 118 KAEMETALESLNGVELEGRAMRVSLAQGR 146
+ ALE +NG +L GRA+RV L +
Sbjct: 323 PNQAREALEKMNGYDLGGRAIRVGLGNDK 351
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 171 (65.3 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 38/126 (30%), Positives = 68/126 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D+ TG+S G+ FV +D I L+G + ++V+++ +P + D L
Sbjct: 102 DKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANL 156
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
+V L ++T + L Q F ++G ++ +R+L D +G SRG GF+ + + E E A++ LN
Sbjct: 157 YVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLN 216
Query: 130 GVELEG 135
G + G
Sbjct: 217 GQKPPG 222
Score = 125 (49.1 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
LP +A T + +FV NL+ L Q F +G V +V+ D + + +G+GFV +
Sbjct: 297 LPAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 356
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 357 DEAAVAIASLNGYRLGDRVLQVS 379
Score = 122 (48.0 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T E L F G + +++ D +G+S GYGFV Y + E A+ +L
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTL 129
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 130 NGLRLQTKTIKVSYAR 145
Score = 65 (27.9 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPK 58
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K
Sbjct: 185 ILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 238
Score = 34 (17.0 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 21 FVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
F ++ +E C V + + G+ LG VN+ + PK
Sbjct: 88 FGSIGEIESCKLVRDKITGQS-LGYGF-VNYME-PK 120
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 170 (64.9 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 43/136 (31%), Positives = 76/136 (55%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
++ D +TG S G+AFV ++ D I+ L+G + L+V+++ +P + + D
Sbjct: 156 IMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA-RPGGE----SIKD 210
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L+V NL ++T + L F +YG++V +L D +GR RG FV Y+ + E + A+
Sbjct: 211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 270
Query: 127 SLNGVELEGRAMRVSL 142
+LN V EG + +S+
Sbjct: 271 ALNNVIPEGGSQPLSV 286
Score = 105 (42.0 bits), Expect = 0.00017, P = 0.00017
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L +T L F+ G + R++ D ++G S GY FV ++++ + + A++ L
Sbjct: 127 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 186
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ + + ++VS A+
Sbjct: 187 NGITVRNKRLKVSYAR 202
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 172 (65.6 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 46/145 (31%), Positives = 73/145 (50%)
Query: 6 TVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYL-GRILRVNFSDKPKPKLPLYA- 63
TV+ D TGRSRGF F+T + N V+ +L G+I+ PK +P
Sbjct: 193 TVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK---EHHLDGKII------DPKRAIPREEQ 243
Query: 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 123
E K+FVG + T E F ++G V+ A ++ D ++GR RG+GFV Y ++ +E
Sbjct: 244 EKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEA 303
Query: 124 ALESLNGVELEGRAMRVSLAQGRRS 148
+ S + + G+ + V A + S
Sbjct: 304 TM-SQPYITIHGKPVEVKRATPKAS 327
Score = 130 (50.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 53 DKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 112
D + P E D K+F+G L+W T +SL F+++G V+ V+ D +GRSRG+GF
Sbjct: 150 DNAEETSPFNRE-DGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGF 208
Query: 113 VCY 115
+ +
Sbjct: 209 LTF 211
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 170 (64.9 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 40/145 (27%), Positives = 78/145 (53%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGR---EYLGRILRVNFSDKPKPKLPLYA 63
V+ +++TG+ G+ F+ ++ V++ + + ++ R+N++
Sbjct: 93 VIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGD-KRDD 151
Query: 64 ETDFKLFVGNLSWSVTTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
D+ +FVG+L+ VT L + F+ Y +V GA+V+ D +GR++GYGFV +S ++E
Sbjct: 152 SPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Query: 123 TALESLNGVELEGRAMRVSLAQGRR 147
A+ +NGV R MR+ A ++
Sbjct: 212 RAMTEMNGVPCSTRPMRIGPAASKK 236
Score = 115 (45.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVG L SVT + L F +YG +V ++ +G+ GFV +S K+ E AL L
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKI----PAGKR--CGFVQFSEKSCAEEALRML 316
Query: 129 NGVELEGRAMRVS 141
NGV+L G +R+S
Sbjct: 317 NGVQLGGTTVRLS 329
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A F ++VGN+ + T E + F G+V R++YD E+GR RG+ FV +S +A +
Sbjct: 2 ASQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQ 61
Query: 123 TALESLNGVELEGRAMRVSLA 143
A+E LNGV GR +RV+ A
Sbjct: 62 RAVEQLNGVAFNGRNLRVNYA 82
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
++ + ++YDRETGR RGFAFV S +E L+G + GR LRVN+++K
Sbjct: 32 VNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYANK 84
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 172 (65.6 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 39/131 (29%), Positives = 76/131 (58%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGN 73
G+S+G+AF+ ++ ED + + + E GR +R+ P+ ++ LFV
Sbjct: 377 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQG-PRGSPNARSQPSKTLFVKG 435
Query: 74 LSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 133
LS T E+L ++F+ G+V AR++ D E+G S+G+GFV ++++ + +TA E++ E+
Sbjct: 436 LSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMEDGEI 492
Query: 134 EGRAMRVSLAQ 144
+G + + A+
Sbjct: 493 DGNKVTLDWAK 503
Score = 142 (55.0 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 36/129 (27%), Positives = 67/129 (51%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D TG +R F +V + ED +E L G + G +++ +KPK + L
Sbjct: 198 DVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL---EKPKGRDSKKVRAARTL 253
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
NLS+++T + L + F++ V R++ + GRS+G ++ + ++A+ E LE
Sbjct: 254 LAKNLSFNITEDELKEVFED---AVEIRLV--SQDGRSKGIAYIEFKSEADAEKNLEEKQ 308
Query: 130 GVELEGRAM 138
G E++GR++
Sbjct: 309 GAEIDGRSV 317
Score = 141 (54.7 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 40/142 (28%), Positives = 74/142 (52%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS-DKPKP-----KLPLYAET 65
+ GRS+G A++ + D +E G E GR + + ++ +K + K ++
Sbjct: 282 QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGE 341
Query: 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 125
L + NLS+S T E+L + F++ + + G+S+GY F+ +++ + + AL
Sbjct: 342 SKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAKEAL 397
Query: 126 ESLNGVELEGRAMRVSLAQGRR 147
S N +E+EGR +R+ L QG R
Sbjct: 398 NSCNKMEIEGRTIRLEL-QGPR 418
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 167 (63.8 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 30/77 (38%), Positives = 51/77 (66%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVGN+S+ V+ +++ F + GNV+ ++++D E+G+ +GYGF+ + E A+ +L
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 129 NGVELEGRAMRVSLAQG 145
NG EL GR +RV A G
Sbjct: 80 NGYELSGRILRVDSAAG 96
Score = 104 (41.7 bits), Expect = 0.00029, P = 0.00029
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50
+ +++DRETG+ +G+ F+ ++ I NL+G E GRILRV+
Sbjct: 47 IKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD 92
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 39/133 (29%), Positives = 76/133 (57%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+ G+S+G+AF+ ++ ED + + + RE GR +R+ P+ ++ LFV
Sbjct: 518 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG-PRGSPNARSQPSKTLFV 576
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
LS T E+L ++F G+V AR++ D E+G S+G+GFV ++++ + + A E++
Sbjct: 577 KGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 633
Query: 132 ELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 634 EIDGNKVTLDWAK 646
Score = 147 (56.8 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 41/141 (29%), Positives = 72/141 (51%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS-------DKPKPKLPLYAETD 66
G+S+G A++ T D E G E GR + + ++ D K ++
Sbjct: 426 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 485
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L + NLS+S T E+L + F++ + + ++G+S+GY F+ +++ + + AL
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALN 541
Query: 127 SLNGVELEGRAMRVSLAQGRR 147
S N E+EGRA+R+ L QG R
Sbjct: 542 SCNKREIEGRAIRLEL-QGPR 561
Score = 134 (52.2 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 36/130 (27%), Positives = 66/130 (50%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK- 68
D G +R F +V + ED +E L G + G +++ +KPK K E D +
Sbjct: 340 DVRIGMTRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL---EKPKGK-DSKKERDART 394
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L NL + VT + L + F++ + R++ + G+S+G ++ + T+A+ E E
Sbjct: 395 LLAKNLPYKVTQDELKEVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEK 449
Query: 129 NGVELEGRAM 138
G E++GR++
Sbjct: 450 QGTEIDGRSI 459
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 39/133 (29%), Positives = 76/133 (57%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+ G+S+G+AF+ ++ ED + + + RE GR +R+ P+ ++ LFV
Sbjct: 519 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG-PRGSPNARSQPSKTLFV 577
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
LS T E+L ++F G+V AR++ D E+G S+G+GFV ++++ + + A E++
Sbjct: 578 KGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 634
Query: 132 ELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 635 EIDGNKVTLDWAK 647
Score = 147 (56.8 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 41/141 (29%), Positives = 72/141 (51%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS-------DKPKPKLPLYAETD 66
G+S+G A++ T D E G E GR + + ++ D K ++
Sbjct: 427 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 486
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L + NLS+S T E+L + F++ + + ++G+S+GY F+ +++ + + AL
Sbjct: 487 KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALN 542
Query: 127 SLNGVELEGRAMRVSLAQGRR 147
S N E+EGRA+R+ L QG R
Sbjct: 543 SCNKREIEGRAIRLEL-QGPR 562
Score = 134 (52.2 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 36/130 (27%), Positives = 66/130 (50%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK- 68
D G +R F +V + ED +E L G + G +++ +KPK K E D +
Sbjct: 341 DVRIGMTRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL---EKPKGK-DSKKERDART 395
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L NL + VT + L + F++ + R++ + G+S+G ++ + T+A+ E E
Sbjct: 396 LLAKNLPYKVTQDELKEVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEK 450
Query: 129 NGVELEGRAM 138
G E++GR++
Sbjct: 451 QGTEIDGRSI 460
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 39/133 (29%), Positives = 76/133 (57%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+ G+S+G+AF+ ++ ED + + + RE GR +R+ P+ ++ LFV
Sbjct: 520 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG-PRGSPNARSQPSKTLFV 578
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
LS T E+L ++F G+V AR++ D E+G S+G+GFV ++++ + + A E++
Sbjct: 579 KGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 635
Query: 132 ELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 636 EIDGNKVTLDWAK 648
Score = 147 (56.8 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 41/141 (29%), Positives = 72/141 (51%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS-------DKPKPKLPLYAETD 66
G+S+G A++ T D E G E GR + + ++ D K ++
Sbjct: 428 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 487
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L + NLS+S T E+L + F++ + + ++G+S+GY F+ +++ + + AL
Sbjct: 488 KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALN 543
Query: 127 SLNGVELEGRAMRVSLAQGRR 147
S N E+EGRA+R+ L QG R
Sbjct: 544 SCNKREIEGRAIRLEL-QGPR 563
Score = 134 (52.2 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 36/130 (27%), Positives = 66/130 (50%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK- 68
D G +R F +V + ED +E L G + G +++ +KPK K E D +
Sbjct: 342 DVRIGMTRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL---EKPKGK-DSKKERDART 396
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L NL + VT + L + F++ + R++ + G+S+G ++ + T+A+ E E
Sbjct: 397 LLAKNLPYKVTQDELKEVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEK 451
Query: 129 NGVELEGRAM 138
G E++GR++
Sbjct: 452 QGTEIDGRSI 461
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 39/133 (29%), Positives = 76/133 (57%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+ G+S+G+AF+ ++ ED + + + RE GR +R+ P+ ++ LFV
Sbjct: 523 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG-PRGSPNARSQPSKTLFV 581
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
LS T E+L ++F G+V AR++ D E+G S+G+GFV ++++ + + A E++
Sbjct: 582 KGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 638
Query: 132 ELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 639 EIDGNKVTLDWAK 651
Score = 147 (56.8 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 41/141 (29%), Positives = 74/141 (52%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS-DKPKP------KLPLYAETD 66
G+S+G A++ T D E G E GR + + ++ +K + K ++
Sbjct: 431 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGES 490
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L + NLS+S T E+L + F++ + + ++G+S+GY F+ +++ + + AL
Sbjct: 491 KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALN 546
Query: 127 SLNGVELEGRAMRVSLAQGRR 147
S N E+EGRA+R+ L QG R
Sbjct: 547 SCNKREIEGRAIRLEL-QGPR 566
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 37/130 (28%), Positives = 66/130 (50%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK- 68
D G SR F +V + ED +E L G + G +++ +KPK K + D +
Sbjct: 345 DVRIGVSRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL---EKPKGK-DSKKDRDART 399
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L NL + VT + L + F++ V R++ + G+S+G ++ + T+A+ E E
Sbjct: 400 LLAKNLPYKVTQDELKEVFED---AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTFEEK 454
Query: 129 NGVELEGRAM 138
G E++GR++
Sbjct: 455 QGTEIDGRSI 464
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 159 (61.0 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 43/130 (33%), Positives = 71/130 (54%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDC-NAV-IENLDGR--EYLGRILRVNFSDKPKPKLP 60
+T++ D+ T S+G AF+T ST E+ NA+ N G E + + L+V +SD K+
Sbjct: 47 ITIIKDKRTNVSKGCAFITFSTKEEADNALNTTNESGTFLENMNKPLQVKYSDNEIEKM- 105
Query: 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE 120
+ KLF+G L S + + F YG + ++ + + G+ +GYGF+ YST+ E
Sbjct: 106 -----ERKLFIGMLGTS-DEDQIRILFGNYGIIEDLNIVRE-KDGKPKGYGFIKYSTRDE 158
Query: 121 METALESLNG 130
E AL ++G
Sbjct: 159 SENALREIDG 168
Score = 127 (49.8 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
LF+ L ++ E L Q F YGNV+ ++V D + +S+ +GFV Y A++ L
Sbjct: 289 LFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQEL 348
Query: 129 NGVELEGRAMRVSLAQGRR 147
NG +EG+ ++V+ + ++
Sbjct: 349 NGRAIEGKKLKVNFKREKQ 367
Score = 119 (46.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
F +FVG++ S+ E ++Q F ++GN++ ++ D + S+G F+ +STK E + AL
Sbjct: 18 FTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALN 77
Query: 127 SLN--GVELE 134
+ N G LE
Sbjct: 78 TTNESGTFLE 87
Score = 62 (26.9 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYL-GRILR--VNFSDKPKP 57
++ L ++ +++ G+ +G+ F+ ST ++ + +DG+ L G L V F+D +
Sbjct: 131 IIEDLNIVREKD-GKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADTERQ 189
Query: 58 K 58
K
Sbjct: 190 K 190
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 172 (65.6 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 38/133 (28%), Positives = 76/133 (57%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+ G+S+G+AF+ ++ ED + + + RE GR +R+ P+ ++ LFV
Sbjct: 433 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG-PRGSPNARSQPSKTLFV 491
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
LS T E+L ++F G++ AR++ D E+G S+G+GFV ++++ + + A E++
Sbjct: 492 KGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 548
Query: 132 ELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 549 EIDGNKVTLDWAK 561
Score = 154 (59.3 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 41/136 (30%), Positives = 71/136 (52%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGRE--YLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
G+S+G A++ T D +E G E Y G + D K ++ L +
Sbjct: 348 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGE--KGQSQDHRGGKNSTWSGESKTLVL 405
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
NLS+S T E+L + F++ ++ + ++G+S+GY F+ +++ + + AL S N
Sbjct: 406 SNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 461
Query: 132 ELEGRAMRVSLAQGRR 147
E+EGRA+R+ L QG R
Sbjct: 462 EIEGRAIRLEL-QGPR 476
Score = 123 (48.4 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 36/126 (28%), Positives = 63/126 (50%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK- 68
D G SR F +V + ED +E L G + G +++ +KPK K + D +
Sbjct: 262 DVRIGVSRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL---EKPKGK-DSKKDRDART 316
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L NL + VT + L + F++ V R++ + G+S+G ++ + T+A+ E LE
Sbjct: 317 LLAKNLPYKVTQDELKEVFED---AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEK 371
Query: 129 NGVELE 134
G E++
Sbjct: 372 QGTEID 377
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 172 (65.6 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 38/133 (28%), Positives = 76/133 (57%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+ G+S+G+AF+ ++ ED + + + RE GR +R+ P+ ++ LFV
Sbjct: 438 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG-PRGSPNARSQPSKTLFV 496
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
LS T E+L ++F G++ AR++ D E+G S+G+GFV ++++ + + A E++
Sbjct: 497 KGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 553
Query: 132 ELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 554 EIDGNKVTLDWAK 566
Score = 154 (59.3 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 41/136 (30%), Positives = 71/136 (52%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGRE--YLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
G+S+G A++ T D +E G E Y G + D K ++ L +
Sbjct: 353 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGE--KGQSQDHRGGKNSTWSGESKTLVL 410
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
NLS+S T E+L + F++ ++ + ++G+S+GY F+ +++ + + AL S N
Sbjct: 411 SNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 466
Query: 132 ELEGRAMRVSLAQGRR 147
E+EGRA+R+ L QG R
Sbjct: 467 EIEGRAIRLEL-QGPR 481
Score = 123 (48.4 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 36/126 (28%), Positives = 63/126 (50%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK- 68
D G SR F +V + ED +E L G + G +++ +KPK K + D +
Sbjct: 267 DVRIGVSRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL---EKPKGK-DSKKDRDART 321
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L NL + VT + L + F++ V R++ + G+S+G ++ + T+A+ E LE
Sbjct: 322 LLAKNLPYKVTQDELKEVFED---AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEK 376
Query: 129 NGVELE 134
G E++
Sbjct: 377 QGTEID 382
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 172 (65.6 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 38/133 (28%), Positives = 76/133 (57%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+ G+S+G+AF+ ++ ED + + + RE GR +R+ P+ ++ LFV
Sbjct: 438 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG-PRGSPNARSQPSKTLFV 496
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
LS T E+L ++F G++ AR++ D E+G S+G+GFV ++++ + + A E++
Sbjct: 497 KGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 553
Query: 132 ELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 554 EIDGNKVTLDWAK 566
Score = 154 (59.3 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 41/136 (30%), Positives = 71/136 (52%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGRE--YLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
G+S+G A++ T D +E G E Y G + D K ++ L +
Sbjct: 353 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGE--KGQSQDHRGGKNSTWSGESKTLVL 410
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
NLS+S T E+L + F++ ++ + ++G+S+GY F+ +++ + + AL S N
Sbjct: 411 SNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 466
Query: 132 ELEGRAMRVSLAQGRR 147
E+EGRA+R+ L QG R
Sbjct: 467 EIEGRAIRLEL-QGPR 481
Score = 123 (48.4 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 36/126 (28%), Positives = 63/126 (50%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK- 68
D G SR F +V + ED +E L G + G +++ +KPK K + D +
Sbjct: 267 DVRIGVSRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL---EKPKGK-DSKKDRDART 321
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L NL + VT + L + F++ V R++ + G+S+G ++ + T+A+ E LE
Sbjct: 322 LLAKNLPYKVTQDELKEVFED---AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEK 376
Query: 129 NGVELE 134
G E++
Sbjct: 377 QGTEID 382
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 167 (63.8 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 42/134 (31%), Positives = 66/134 (49%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
DR T +G+ FV ++ ED ++G G+ +RVN + K K E +L
Sbjct: 47 DRVTQSHQGYGFVEFNSEEDAEYASRIMNGIRLYGKPIRVNKASADKQKS---VEIGAEL 103
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
FVGNL VT + L F +GN+V + +S S+GYGFV ++ + A+ ++N
Sbjct: 104 FVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMN 163
Query: 130 GVELEGRAMRVSLA 143
G L + + V A
Sbjct: 164 GQYLMNKQVSVQYA 177
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 169 (64.5 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 40/134 (29%), Positives = 73/134 (54%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK-P-KLPLYAETD--FKL 69
G + +AFV S +++ +GRE L + + V ++ +P+ P + ET F +
Sbjct: 75 GLNDPYAFVEFSDHNQATLALQSHNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHV 134
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
FVG+L + + L +AF ++G V A+++ D + + +GYGFV Y + + E A++ +N
Sbjct: 135 FVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMN 194
Query: 130 GVELEGRAMRVSLA 143
G L R +R + A
Sbjct: 195 GAWLGRRTIRTNWA 208
Score = 105 (42.0 bits), Expect = 0.00024, P = 0.00024
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 38 DGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGAR 97
DG + R+ +++ +L +E LFV NL ++T E L F + G V+ A+
Sbjct: 12 DGDGFNPRV-HARIAEREGFQLASGSEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAK 70
Query: 98 VLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143
++++G + Y FV +S + AL+S NG EL + M V+ A
Sbjct: 71 IIFEGLNDP---YAFVEFSDHNQATLALQSHNGRELLEKEMHVTWA 113
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 169 (64.5 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 22 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 81
Query: 129 NGVELEGRAMRVSLAQGRRS 148
NG E GRA+RV A ++
Sbjct: 82 NGREFSGRALRVDNAASEKN 101
Score = 108 (43.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN--FSDKPKPKL 59
++YDRETG+ +G+ F E + + NL+GRE+ GR LRV+ S+K K +L
Sbjct: 51 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEEL 105
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 171 (65.3 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 46/155 (29%), Positives = 81/155 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGR---------ILRV 49
L + D E RG+AFV ED E ++G + Y+GR +LR
Sbjct: 230 LAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLRE 288
Query: 50 NFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRG 109
F +K + + + A+ ++V N++ +VT E L + F + G + +++ D E G+S+G
Sbjct: 289 QFKEKHEEQ-KMIAKVS-NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKG 345
Query: 110 YGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
+GFVC+ST E A+++ +G G+ + V++AQ
Sbjct: 346 FGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Score = 145 (56.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 39/128 (30%), Positives = 66/128 (51%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
L+ + + D +GRS + + + +D N IE + G+++RV +S + P
Sbjct: 50 LTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRA-PDARR 108
Query: 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
+ +FV NL SVT L F+++GN+V +V E G+SRGYGFV + +
Sbjct: 109 NGVGN--VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAA 165
Query: 122 ETALESLN 129
A+++LN
Sbjct: 166 HAAIQTLN 173
Score = 145 (56.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 40/139 (28%), Positives = 70/139 (50%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDG-----RE-YLGRILRVNFSDKPKPKLPLYAET 65
E G+SRG+ FV + +A I+ L+ +E Y+G+ ++ +D+ KP+ E
Sbjct: 147 EDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK--TDRVKPE-----EK 199
Query: 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 125
L++ NL V+ + L + F E+G +V + D E+ RGY FV + + A
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAA 258
Query: 126 ESLNGVELEGRAMRVSLAQ 144
E++NG + + + V AQ
Sbjct: 259 ETVNGTKFGSKCLYVGRAQ 277
Score = 114 (45.2 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L SVT L AF E+ ++ R+ D SGRS YG+ + ++ + A+E
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 129 NGVELEGRAMRV 140
N L G+ +RV
Sbjct: 86 NNSLLNGKMIRV 97
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 172 (65.6 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 38/133 (28%), Positives = 76/133 (57%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+ G+S+G+AF+ ++ ED + + + RE GR +R+ P+ ++ LFV
Sbjct: 528 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG-PRGSPNARSQPSKTLFV 586
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
LS T E+L ++F G++ AR++ D E+G S+G+GFV ++++ + + A E++
Sbjct: 587 KGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 643
Query: 132 ELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 644 EIDGNKVTLDWAK 656
Score = 154 (59.3 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 41/141 (29%), Positives = 74/141 (52%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS-------DKPKPKLPLYAETD 66
G+S+G A++ T D +E G E GR + + ++ D K ++
Sbjct: 436 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGES 495
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L + NLS+S T E+L + F++ ++ + ++G+S+GY F+ +++ + + AL
Sbjct: 496 KTLVLSNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDAKEALN 551
Query: 127 SLNGVELEGRAMRVSLAQGRR 147
S N E+EGRA+R+ L QG R
Sbjct: 552 SCNKREIEGRAIRLEL-QGPR 571
Score = 136 (52.9 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 38/130 (29%), Positives = 67/130 (51%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK- 68
D G SR F +V + ED +E L G + G +++ +KPK K + D +
Sbjct: 350 DVRIGVSRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL---EKPKGK-DSKKDRDART 404
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L NL + VT + L + F++ V R++ + G+S+G ++ + T+A+ E LE
Sbjct: 405 LLAKNLPYKVTQDELKEVFED---AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEK 459
Query: 129 NGVELEGRAM 138
G E++GR++
Sbjct: 460 QGTEIDGRSI 469
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 172 (65.6 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 38/133 (28%), Positives = 76/133 (57%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+ G+S+G+AF+ ++ ED + + + RE GR +R+ P+ ++ LFV
Sbjct: 531 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG-PRGSPNARSQPSKTLFV 589
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
LS T E+L ++F G++ AR++ D E+G S+G+GFV ++++ + + A E++
Sbjct: 590 KGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 646
Query: 132 ELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 647 EIDGNKVTLDWAK 659
Score = 145 (56.1 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 40/141 (28%), Positives = 75/141 (53%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS-DKPKP------KLPLYAETD 66
G+S+G A++ T D +E G E GR + + ++ +K + K ++
Sbjct: 439 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGES 498
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L + NL++S T E+L + F++ + + ++G+S+GY F+ +++ + + AL
Sbjct: 499 KTLVLSNLAYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALN 554
Query: 127 SLNGVELEGRAMRVSLAQGRR 147
S N E+EGRA+R+ L QG R
Sbjct: 555 SCNKREIEGRAIRLEL-QGPR 574
Score = 136 (52.9 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 38/130 (29%), Positives = 67/130 (51%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK- 68
D G SR F +V + ED +E L G + G +++ +KPK K + D +
Sbjct: 353 DVRIGVSRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL---EKPKGK-DSKKDRDART 407
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L NL + VT + L + F++ V R++ + G+S+G ++ + T+A+ E LE
Sbjct: 408 LLAKNLPYKVTQDELKEVFED---AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEK 462
Query: 129 NGVELEGRAM 138
G E++GR++
Sbjct: 463 QGTEIDGRSI 472
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 165 (63.1 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 35/136 (25%), Positives = 71/136 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
++ D+ G S G+ FV T +D I L+G + ++V+++ +P ++ D
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYA-RPSSEVI----KD 105
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L++ L ++T + + F +G ++ +RVL D +G SRG F+ + ++E E A+
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 127 SLNGVELEGRAMRVSL 142
S NG + G + +++
Sbjct: 166 SFNGHKPPGSSEPITV 181
Score = 137 (53.3 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T E L F G V A+++ D +G S GYGFV Y T + E A+ +L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 82 NGLRLQSKTIKVSYAR 97
Score = 107 (42.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P A + + +F+ NL L Q F +G V +V+ D + + +G+GFV +
Sbjct: 236 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L + ++VS
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVS 318
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 165 (63.1 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 35/136 (25%), Positives = 71/136 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
++ D+ G S G+ FV T +D I L+G + ++V+++ +P ++ D
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYA-RPSSEVI----KD 105
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L++ L ++T + + F +G ++ +RVL D +G SRG F+ + ++E E A+
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 127 SLNGVELEGRAMRVSL 142
S NG + G + +++
Sbjct: 166 SFNGHKPPGSSEPITV 181
Score = 137 (53.3 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T E L F G V A+++ D +G S GYGFV Y T + E A+ +L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 82 NGLRLQSKTIKVSYAR 97
Score = 107 (42.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P A + + +F+ NL L Q F +G V +V+ D + + +G+GFV +
Sbjct: 236 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L + ++VS
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVS 318
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 165 (63.1 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 35/136 (25%), Positives = 71/136 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
++ D+ G S G+ FV T +D I L+G + ++V+++ +P ++ D
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA-RPSSEVI----KD 105
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L++ L S+T + + F +G ++ +RVL D +G SRG F+ + ++E E A+
Sbjct: 106 ANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 127 SLNGVELEGRAMRVSL 142
+ NG + G + +++
Sbjct: 166 NFNGHKPPGSSEPITV 181
Score = 134 (52.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T + L F G V A+++ D +G S GYGFV Y T + E A+ +L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 82 NGLRLQSKTIKVSYAR 97
Score = 107 (42.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P A + + +F+ NL L Q F +G V +V+ D + + +G+GFV +
Sbjct: 236 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L + ++VS
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVS 318
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 165 (63.1 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 35/136 (25%), Positives = 71/136 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
++ D+ G S G+ FV T +D I L+G + ++V+++ +P ++ D
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA-RPSSEVI----KD 105
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L++ L ++T + + F +G ++ +RVL D +G SRG F+ + ++E E A+
Sbjct: 106 ANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 127 SLNGVELEGRAMRVSL 142
S NG + G + +++
Sbjct: 166 SFNGHKPPGSSEPITV 181
Score = 134 (52.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T + L F G V A+++ D +G S GYGFV Y T + E A+ +L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 82 NGLRLQSKTIKVSYAR 97
Score = 107 (42.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P A + + +F+ NL L Q F +G V +V+ D + + +G+GFV +
Sbjct: 236 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L + ++VS
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVS 318
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 165 (63.1 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 35/136 (25%), Positives = 71/136 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
++ D+ G S G+ FV T +D I L+G + ++V+++ +P ++ D
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA-RPSSEVI----KD 105
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L++ L ++T + + F +G ++ +RVL D +G SRG F+ + ++E E A+
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 127 SLNGVELEGRAMRVSL 142
S NG + G + +++
Sbjct: 166 SFNGHKPPGSSEPITV 181
Score = 134 (52.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T + L F G V A+++ D +G S GYGFV Y T + E A+ +L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 82 NGLRLQSKTIKVSYAR 97
Score = 107 (42.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P A + + +F+ NL L Q F +G V +V+ D + + +G+GFV +
Sbjct: 236 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L + ++VS
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVS 318
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 166 (63.5 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 41/135 (30%), Positives = 70/135 (51%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
DR T + + F+ + ED + I+ L+ + G+ +RVN + + K L + A L
Sbjct: 59 DRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGAN----L 114
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVG-ARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
F+GNL V + L F +G + +++ D ++G SRG+GF+ Y + + A+ES+
Sbjct: 115 FIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESM 174
Query: 129 NGVELEGRAMRVSLA 143
G L R + VS A
Sbjct: 175 TGQYLSNRQITVSYA 189
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 125
D ++VG L ++ E L + F + G VV V D + + YGF+ Y ++ + + A+
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAI 83
Query: 126 ESLNGVELEGRAMRVSLA-QGRRS 148
+ LN ++L G+ +RV+ A Q ++S
Sbjct: 84 KVLNMIKLHGKPIRVNKASQDKKS 107
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 165 (63.1 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 35/136 (25%), Positives = 71/136 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
++ D+ G S G+ FV T +D I L+G + ++V+++ +P ++ D
Sbjct: 59 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA-RPSSEVI----KD 113
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L++ L ++T + + F +G ++ +RVL D +G SRG F+ + ++E E A+
Sbjct: 114 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 173
Query: 127 SLNGVELEGRAMRVSL 142
S NG + G + +++
Sbjct: 174 SFNGHKPPGSSEPITV 189
Score = 134 (52.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T + L F G V A+++ D +G S GYGFV Y T + E A+ +L
Sbjct: 30 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 89
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 90 NGLRLQSKTIKVSYAR 105
Score = 107 (42.7 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P A + + +F+ NL L Q F +G V +V+ D + + +G+GFV +
Sbjct: 244 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 303
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L + ++VS
Sbjct: 304 EEAAMAIASLNGYRLGDKILQVS 326
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KL+VGNL++ V L + F YG V A+V+ D +GRSRG+GFV + E + A+
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 128 LNGVELEGRAMRVSLAQ 144
LNG E++GR + V+ A+
Sbjct: 64 LNGKEMDGRNLMVNEAR 80
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 56
V+ DR TGRSRGF FV M + ++ A I L+G+E GR L VN + P+
Sbjct: 34 VVMDRATGRSRGFGFVEMGSDQEAQAAIAGLNGKEMDGRNLMVNEARPPE 83
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 170 (64.9 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 45/151 (29%), Positives = 76/151 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------KPKL 59
V+ D E G+S+GF FV+ ED ++ ++G+E G+ + V + K K K
Sbjct: 222 VMTD-EGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKF 280
Query: 60 PLYAET------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV 113
+ L+V NL + E L + F +G + +V+ +G GRS+G+GFV
Sbjct: 281 EQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG--GRSKGFGFV 338
Query: 114 CYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
C+S+ E A+ +NG + + + V+LAQ
Sbjct: 339 CFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 40/143 (27%), Positives = 75/143 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRIMWSQRD-PSLRRSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL+ ++ ++L F +GN++ +V+ D E+G S+G+GFV + T+ E A
Sbjct: 99 GN--VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGHGFVHFETEEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGQFKSRK 177
Score = 104 (41.7 bits), Expect = 0.00072, P = 0.00072
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G ++ RV D + RS GY V + A+ E AL+++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPVRIMWSQ 88
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 170 (64.9 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 45/151 (29%), Positives = 80/151 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP-------KPKL 59
V+ D + G+S+GF FV+ ED ++ ++G++ G+ + V + K K K
Sbjct: 222 VMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKF 280
Query: 60 PLYAE---TDFK---LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV 113
+ T ++ L+V NL + E L + F +G + A+V+ +G GRS+G+GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFV 338
Query: 114 CYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
C+S+ E A+ +NG + + + V+LAQ
Sbjct: 339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 42/143 (29%), Positives = 75/143 (52%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ GR +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRD-PSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
++ +NG+ L R + V + R+
Sbjct: 155 IDKMNGMLLNDRKVFVGRFKSRK 177
Score = 154 (59.3 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 38/136 (27%), Positives = 72/136 (52%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-K 68
E G S+G+ FV T E I+ ++G R + V F + + + L A +F
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 192
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+++ N + E L + F +YG + +V+ D ++G+S+G+GFV + + + A++ +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 129 NGVELEGRAMRVSLAQ 144
NG ++ G++M V AQ
Sbjct: 252 NGKDMNGKSMFVGRAQ 267
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMAS--LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++GR +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQ 88
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 169 (64.5 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 129 NGVELEGRAMRVSLAQGRRS 148
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
Score = 108 (43.1 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN--FSDKPKPKL 59
++YDRETG+ +G+ F E + + NL+GRE+ GR LRV+ S+K K +L
Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEEL 101
Score = 37 (18.1 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 101 DGESGR-SRGYGFVCYSTKA-E---METALESLNGVELEGRAMR 139
DG R SRG T+ E MET G++ G MR
Sbjct: 329 DGRGSRDSRGMETEVLETRVLERRGMETCAMEARGMDARGMEMR 372
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 170 (64.9 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 50/156 (32%), Positives = 79/156 (50%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK-LP 60
+S V+ D + G+SR F FV ED +E L+G+++ + V + K + L
Sbjct: 251 ISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 309
Query: 61 L---YAE--TD-------FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSR 108
L Y + +D L+V NL +VT E L + F E+G + +V+ D SG S+
Sbjct: 310 LSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSK 368
Query: 109 GYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
G GFV +S +E L +NG + G+ + V+LAQ
Sbjct: 369 GSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 404
Score = 165 (63.1 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 44/135 (32%), Positives = 68/135 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYL-GRILRVNFSDKPKPKLPLYAET 65
V D T S G+ +V S +D ++ L+ YL G+++R+ +S +
Sbjct: 77 VCRDAATNTSLGYGYVNYSNTDDAEKAMQKLN-YSYLNGKMIRITYSSRDSSARRSGVGN 135
Query: 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 125
LFV NL SV ++L +AF G +V +V D G+SRGYGFV + T+ + A+
Sbjct: 136 ---LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAI 191
Query: 126 ESLNGVELEGRAMRV 140
E LNG L + + V
Sbjct: 192 EKLNGKVLNDKQIFV 206
Score = 159 (61.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 43/137 (31%), Positives = 71/137 (51%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRILRVNFSDKPKPKLPLYAETDF 67
G+SRG+ FV T + IE L+G+ ++G LR + K+ T+
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKF---TN- 226
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
++V NLS + T + L F +YG++ A V+ DG+ G+SR +GFV + + A+E+
Sbjct: 227 -VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEA 284
Query: 128 LNGVELEGRAMRVSLAQ 144
LNG + + + V AQ
Sbjct: 285 LNGKKFDDKEWYVGKAQ 301
Score = 127 (49.8 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L ++VT L F E VV RV D + S GYG+V YS + E A++ L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 129 NGVELEGRAMRVS 141
N L G+ +R++
Sbjct: 108 NYSYLNGKMIRIT 120
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 165 (63.1 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 35/136 (25%), Positives = 71/136 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
++ D+ G S G+ FV T +D I L+G + ++V+++ +P ++ D
Sbjct: 78 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA-RPSSEVI----KD 132
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L++ L ++T + + F +G ++ +RVL D +G SRG F+ + ++E E A+
Sbjct: 133 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 192
Query: 127 SLNGVELEGRAMRVSL 142
S NG + G + +++
Sbjct: 193 SFNGHKPPGSSEPITV 208
Score = 134 (52.2 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T + L F G V A+++ D +G S GYGFV Y T + E A+ +L
Sbjct: 49 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 108
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 109 NGLRLQSKTIKVSYAR 124
Score = 107 (42.7 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P A + + +F+ NL L Q F +G V +V+ D + + +G+GFV +
Sbjct: 263 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 322
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L + ++VS
Sbjct: 323 EEAAMAIASLNGYRLGDKILQVS 345
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 164 (62.8 bits), Expect = 9.5e-12, P = 9.5e-12
Identities = 35/136 (25%), Positives = 71/136 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
++ D+ G S G+ FV T +D I L+G + ++V+++ +P ++ D
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA-RPSSEVI----KD 105
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
L++ L ++T + + F +G ++ +RVL D +G SRG F+ + ++E E A+
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 127 SLNGVELEGRAMRVSL 142
S NG + G + +++
Sbjct: 166 SFNGHKPPGSSEPITV 181
Score = 136 (52.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L V L ++T E L F G + A+++ D +G S GYGFV Y T + E A+ +L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 129 NGVELEGRAMRVSLAQ 144
NG+ L+ + ++VS A+
Sbjct: 82 NGLRLQSKTIKVSYAR 97
Score = 108 (43.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+P A + + +F+ NL L Q F +G V +V+ D + + +G+GFV +
Sbjct: 236 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 119 AEMETALESLNGVELEGRAMRVS 141
E A+ SLNG L + ++VS
Sbjct: 296 EEASMAIASLNGYRLGDKILQVS 318
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 167 (63.8 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 43/151 (28%), Positives = 76/151 (50%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDG--REYLGRILRVNFSD-KPKPK 58
+S + V+ +++T +S G+ FV + +++ G + R+N++ K
Sbjct: 145 VSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEK 204
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYST 117
D +FVG+L+ V+ L + F Y +V GA+V+ D +GRS+GYGFV +
Sbjct: 205 RASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGD 264
Query: 118 KAEMETALESLNGVELEGRAMRVSLAQGRRS 148
+ E A+ +NG R MRV +A +R+
Sbjct: 265 ENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 34/107 (31%), Positives = 59/107 (55%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+T + + FV A + ++GR+ +G+ ++VN++ P + F +FV
Sbjct: 33 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKK-DTSNHFHVFV 91
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
G+LS +TTE + AF +G + ARV+ D +G+S+GYGFV + K
Sbjct: 92 GDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 138
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 38/135 (28%), Positives = 73/135 (54%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
DR TG+ +G+ FV + ED + I+ ++ + G+ +RVN + L + A +
Sbjct: 4 DRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGAN----I 59
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGA-RVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
F+GNL + + L F +G ++ +++ D ++G S+GY F+ +++ + A+E++
Sbjct: 60 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 119
Query: 129 NGVELEGRAMRVSLA 143
NG L R + VS A
Sbjct: 120 NGQYLCNRPITVSYA 134
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 129 NGVELEGRAMRVSLAQGRRS 148
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
Score = 108 (43.1 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN--FSDKPKPKL 59
++YDRETG+ +G+ F E + + NL+GRE+ GR LRV+ S+K K +L
Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEEL 101
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 129 NGVELEGRAMRVSLAQGRRS 148
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
Score = 108 (43.1 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN--FSDKPKPKL 59
++YDRETG+ +G+ F E + + NL+GRE+ GR LRV+ S+K K +L
Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEEL 101
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 129 NGVELEGRAMRVSLAQGRRS 148
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
Score = 108 (43.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN--FSDKPKPKL 59
++YDRETG+ +G+ F E + + NL+GRE+ GR LRV+ S+K K +L
Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEEL 101
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 129 NGVELEGRAMRVSLAQGRRS 148
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
Score = 108 (43.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN--FSDKPKPKL 59
++YDRETG+ +G+ F E + + NL+GRE+ GR LRV+ S+K K +L
Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEEL 101
Score = 34 (17.0 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 18/59 (30%), Positives = 23/59 (38%)
Query: 91 GNVVGARVL-YDGESGR-SRGYGFVCYSTKA--------EMETALESLNGVELEGRAMR 139
G ++ R L DG GR SRG T+ MET G++ G MR
Sbjct: 407 GPMIDQRGLPMDGRGGRESRGMETRPMETEVLEPRGMERRMETCAMETRGMDARGLEMR 465
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 129 NGVELEGRAMRVSLAQGRRS 148
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN--FSDKPKPKL 59
++YDRETG+ +G+ F E + + NL+GRE+ GR LRV+ S+K K +L
Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEEL 101
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 156 (60.0 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 35/125 (28%), Positives = 69/125 (55%)
Query: 24 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE-----TDFKLFVGNLSWSV 78
+ST++ V N E G+ + + D+ K K+ + E TD LF+ N+ S+
Sbjct: 425 ISTIDGTTTVSSNGGTIEINGKPITI---DRIKSKVERFTEYRKKTTDLSLFINNIDESI 481
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
+ + + F ++G ++G +++ D E+ R++G+GF+ +S E + AL+SLNG + +
Sbjct: 482 DRDLIKEEFAKHGTIIGIKIVQD-ENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQI 540
Query: 139 RVSLA 143
+VS +
Sbjct: 541 QVSFS 545
Score = 151 (58.2 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 40/140 (28%), Positives = 68/140 (48%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
++ + V D T RS G+A+V D ++ L+ G+ R+ +S + P
Sbjct: 212 IASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRD----PT 267
Query: 62 YAETDF-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE 120
+T+ +FV NL V L F +GN++ +V + E G S+GYG+V + T
Sbjct: 268 KRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEF--EKGISKGYGYVHFETNDS 325
Query: 121 METALESLNGVELEGRAMRV 140
E A+E +NG + G+ + V
Sbjct: 326 AEKAIEKVNGTLILGKPINV 345
Score = 104 (41.7 bits), Expect = 0.00099, P = 0.00099
Identities = 29/114 (25%), Positives = 55/114 (48%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
E G S+G+ +V T + IE ++G LG+ + V ++ K+ Y + + K+F
Sbjct: 308 EKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINV---ERFVSKVERY-KVENKVFF 363
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 125
N S+T E L Q + + +L + +G+S+G G V + + + + L
Sbjct: 364 RNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKIL 417
Score = 39 (18.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVI 34
+L + G+S+G V ED ++
Sbjct: 390 ILKNDANGKSKGLGLVEFKNQEDAQKIL 417
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 166 (63.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 129 NGVELEGRAMRVSLAQGRRS 148
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
Score = 108 (43.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN--FSDKPKPKL 59
++YDRETG+ +G+ F E + + NL+GRE+ GR LRV+ S+K K +L
Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEEL 101
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
+L+VG+L +++T + L F+ +G + ++ D ++GRS+GYGF+ +S ALE
Sbjct: 14 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 73
Query: 128 LNGVELEGRAMRV 140
LNG EL GR MRV
Sbjct: 74 LNGFELAGRPMRV 86
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
+L+VG+L +++T + L F+ +G + ++ D ++GRS+GYGF+ +S ALE
Sbjct: 39 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 98
Query: 128 LNGVELEGRAMRV 140
LNG EL GR MRV
Sbjct: 99 LNGFELAGRPMRV 111
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 169 (64.5 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 42/139 (30%), Positives = 73/139 (52%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
++ + V D T RS G+A+V +T D +E L+ GR R+ +S + P L
Sbjct: 87 VASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRD-PALRK 145
Query: 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
+ + +F+ NL ++ ++L F +GN++ +V D E+G S+GYGFV Y T
Sbjct: 146 TGQGN--VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAA 202
Query: 122 ETALESLNGVELEGRAMRV 140
A++ +NG+ L + + V
Sbjct: 203 SQAIKHVNGMLLNEKKVYV 221
Score = 161 (61.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 39/136 (28%), Positives = 72/136 (52%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE--TDF-K 68
E G S+G+ FV T E + I++++G + + V K + + E +F
Sbjct: 184 ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTN 243
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
++V N++ VT + F++YG+V + + D E+G+SRG+GFV +++ + A++ L
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 129 NGVELEGRAMRVSLAQ 144
N E G+ + V AQ
Sbjct: 304 NEKEFHGQNLYVGRAQ 319
Score = 142 (55.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 55 PKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVC 114
P P + + L+VG L SVT L + F + G+V RV D + RS GY +V
Sbjct: 50 PSSAAP-HPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVN 108
Query: 115 YSTKAEMETALESLNGVELEGRAMRVSLAQ 144
Y+T A+ E ALE LN ++GR R+ +Q
Sbjct: 109 YNTTADGEKALEELNYTLIKGRPCRIMWSQ 138
Score = 121 (47.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 34/107 (31%), Positives = 54/107 (50%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNFSDK 54
D+ETG+SRGF FV ++ ED + ++ L+ +E Y+GR LR ++
Sbjct: 276 DQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAA 335
Query: 55 PKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYD 101
+ K Y + L++ NL V E L Q F E+G + A+V+ D
Sbjct: 336 RQEKASKYQGVN--LYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRD 380
Score = 73 (30.8 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 105 GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
G+S+G+GFVC++ + A+ +N + + + V+LAQ
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQ 469
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 166 (63.5 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 129 NGVELEGRAMRVSLAQGRRS 148
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
Score = 108 (43.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN--FSDKPKPKL 59
++YDRETG+ +G+ F E + + NL+GRE+ GR LRV+ S+K K +L
Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEEL 101
>ZFIN|ZDB-GENE-040426-2386 [details] [associations]
symbol:trnau1apl "tRNA selenocysteine 1 associated
protein 1, like" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2386 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234338 OrthoDB:EOG44BB34 EMBL:BC098884
IPI:IPI00833586 UniGene:Dr.5347 ProteinModelPortal:Q4KM14
SMR:Q4KM14 STRING:Q4KM14 PRIDE:Q4KM14 InParanoid:Q4KM14
ArrayExpress:Q4KM14 Uniprot:Q4KM14
Length = 316
Score = 162 (62.1 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 47/143 (32%), Positives = 77/143 (53%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLG----RILRVNFSDKPKPKLPLY 62
++ R TG S G+ FV M+ + ++ L+G+ G R ++N++ K P
Sbjct: 38 IITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYGKRPEP-- 95
Query: 63 AETDFKLFVGNLSWSVTTESLTQAF-QEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
+F +FVG+L+ V L Q F +++ + GA+V+ D G SRGYGFV +S + E
Sbjct: 96 -GPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTD-PYGNSRGYGFVKFSDENEQ 153
Query: 122 ETALESL-NGVELEGRAMRVSLA 143
+ ALE N L G+ +R+S+A
Sbjct: 154 KKALEEFQNASGLGGKPIRISIA 176
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 159 (61.0 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 123 TALESLNGVELEGRAMRVSLAQG 145
A+ ++NG ++GR +RV A G
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGG 84
Score = 103 (41.3 bits), Expect = 0.00026, P = 0.00026
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50
+S++ V+ DRET RSRGF FVT ++D + ++G+ GR +RV+
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 164 (62.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 44/140 (31%), Positives = 75/140 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
DR T +GF FV ED + I+ L+ + G+ ++VN + + + + A +
Sbjct: 47 DRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGAN----I 102
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGA-RVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
FVGNL V + L F +G ++ +++ D +SG S+G+ F+ +++ +TALE++
Sbjct: 103 FVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAM 162
Query: 129 NGVELEGRAMRVSLAQGRRS 148
NG L RA+ VS A R S
Sbjct: 163 NGQFLCNRAITVSYAFKRDS 182
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 164 (62.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 44/140 (31%), Positives = 75/140 (53%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
DR T +GF FV ED + I+ L+ + G+ ++VN + + + + A +
Sbjct: 47 DRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGAN----I 102
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGA-RVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
FVGNL V + L F +G ++ +++ D +SG S+G+ F+ +++ +TALE++
Sbjct: 103 FVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAM 162
Query: 129 NGVELEGRAMRVSLAQGRRS 148
NG L RA+ VS A R S
Sbjct: 163 NGQFLCNRAITVSYAFKRDS 182
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 164 (62.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 39/127 (30%), Positives = 68/127 (53%)
Query: 10 DRET-GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK 68
D+ T G+S G+ FV +D I L+G + ++V+++ +P + D
Sbjct: 100 DKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDAN 154
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+V L ++T + L Q F +YG ++ +R+L D +G SRG GF+ + + E E A++ L
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 129 NGVELEG 135
NG + G
Sbjct: 215 NGQKPPG 221
Score = 117 (46.2 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 60 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
P +A T + +FV NL+ L Q F +G V +V+ D + + +G+GFV +
Sbjct: 299 PGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 358
Query: 120 EMETALESLNGVELEGRAMRVS 141
E A+ SLNG L R ++VS
Sbjct: 359 EAAMAIASLNGYRLGDRVLQVS 380
Score = 113 (44.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDG-ESGRSRGYGFVCYSTKAEMETALES 127
L V L ++T E L F G + +++ D G+S GYGFV Y + E A+ +
Sbjct: 68 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINT 127
Query: 128 LNGVELEGRAMRVSLAQ 144
LNG+ L+ + ++VS A+
Sbjct: 128 LNGLRLQTKTIKVSYAR 144
Score = 65 (27.9 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRI--LRVNFSDKPKPKL 59
+L D+ TG SRG F+ + I+ L+G++ G + V F++ P K+
Sbjct: 184 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKV 238
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 168 (64.2 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 42/134 (31%), Positives = 71/134 (52%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
V D T RS G+ +V +T +D + + L+ GR +RV +S + P L +
Sbjct: 76 VCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRD-PSLRKSGVGN 134
Query: 67 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 126
+F+ NL S+ ++L + F +G ++ +V D SG+S+GYGFV Y T + A++
Sbjct: 135 --IFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAID 191
Query: 127 SLNGVELEGRAMRV 140
LNG+ L + + V
Sbjct: 192 KLNGMLLNDKQVYV 205
Score = 156 (60.0 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 46/151 (30%), Positives = 76/151 (50%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREY------LGRILRVNFSD---KPKP 57
++ D E G+S+GF FV +D ++ L+G+ + +G+ + + + K K
Sbjct: 255 IMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKF 313
Query: 58 KLPLYAETD----FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV 113
+ L D L+V NL SVT + L + F +G + +V+ D SG SRG GFV
Sbjct: 314 EQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFV 372
Query: 114 CYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
+ST E A+ +NG + + + V+LAQ
Sbjct: 373 AFSTPEEATRAITEMNGKMIVTKPLYVALAQ 403
Score = 151 (58.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 41/134 (30%), Positives = 70/134 (52%)
Query: 13 TGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAETDF-KLF 70
+G+S+G+ FV T E I+ L+G + + V F K + + P + F ++
Sbjct: 169 SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQ-RDPSGEKVKFTNVY 227
Query: 71 VGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG 130
V NLS S++ E L + F E+G ++ DGE G+S+G+GFV + + A+++LNG
Sbjct: 228 VKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNG 286
Query: 131 VELEGRAMRVSLAQ 144
+ + V AQ
Sbjct: 287 KTFDDKEWFVGKAQ 300
Score = 147 (56.8 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 33/72 (45%), Positives = 44/72 (61%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L +VT L +AF + G VV RV D + RS GYG+V Y+T + AL L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 129 NGVELEGRAMRV 140
N + L GRA+RV
Sbjct: 107 NFMALNGRAIRV 118
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 166 (63.5 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 129 NGVELEGRAMRVSLAQGRRS 148
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
Score = 108 (43.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN--FSDKPKPKL 59
++YDRETG+ +G+ F E + + NL+GRE+ GR LRV+ S+K K +L
Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEEL 101
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 168 (64.2 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 38/133 (28%), Positives = 76/133 (57%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFV 71
+ G+S+G+AF+ ++ ED + + + E GR +R+ P+ ++ LFV
Sbjct: 518 QQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQG-PRGSPNARSQPSKTLFV 576
Query: 72 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 131
LS T E+L ++F+ G+V AR++ D E+G S+G+GFV ++++ + + A E++
Sbjct: 577 KGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 633
Query: 132 ELEGRAMRVSLAQ 144
E++G + + A+
Sbjct: 634 EIDGNKVTLDWAK 646
Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 39/142 (27%), Positives = 75/142 (52%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS-DKPKP-----KLPLYAET 65
+ G+S+G A++ + D +E G E GR + + ++ +K + K ++
Sbjct: 425 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGE 484
Query: 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 125
L + NLS+S T E+L + F++ + + + G+S+GY F+ +++ + + AL
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDAKEAL 540
Query: 126 ESLNGVELEGRAMRVSLAQGRR 147
S N +E+EGR +R+ L QG R
Sbjct: 541 NSCNKMEIEGRTIRLEL-QGPR 561
Score = 136 (52.9 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 34/129 (26%), Positives = 67/129 (51%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D TG +R F +V + ED +E L G + G +++ +KPK + L
Sbjct: 341 DVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL---EKPKGRDSKKVRAARTL 396
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
NLS+++T + L + F++ + R++ + G+S+G ++ + ++A+ E LE
Sbjct: 397 LAKNLSFNITEDELKEVFED---ALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQ 451
Query: 130 GVELEGRAM 138
G E++GR++
Sbjct: 452 GAEIDGRSV 460
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 123 TALESLNGVELEGRAMRVSLAQGRRS 148
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
Score = 105 (42.0 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
+S++ V+ DRET RSRGF FVT ++D + ++G+ GR +RV+ + K
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 84
Score = 41 (19.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 91 GNVVGARVLYDGESGRSRGY 110
G G R + G GR RG+
Sbjct: 95 GGSAGGRGFFRGGRGRGRGF 114
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 123 TALESLNGVELEGRAMRVSLAQGRRS 148
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
Score = 105 (42.0 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
+S++ V+ DRET RSRGF FVT ++D + ++G+ GR +RV+ + K
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 84
Score = 41 (19.5 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 91 GNVVGARVLYDGESGRSRGY 110
G G R + G GR RG+
Sbjct: 95 GGSAGGRGFFRGGRGRGRGF 114
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 123 TALESLNGVELEGRAMRVSLAQGRRS 148
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
Score = 105 (42.0 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
+S++ V+ DRET RSRGF FVT ++D + ++G+ GR +RV+ + K
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 84
Score = 41 (19.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 91 GNVVGARVLYDGESGRSRGY 110
G G R + G GR RG+
Sbjct: 95 GGSAGGRGFFRGGRGRGRGF 114
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 123 TALESLNGVELEGRAMRVSLAQGRRS 148
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
Score = 105 (42.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
+S++ V+ DRET RSRGF FVT ++D + ++G+ GR +RV+ + K
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 84
Score = 41 (19.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 91 GNVVGARVLYDGESGRSRGY 110
G G R + G GR RG+
Sbjct: 95 GGSAGGRGFFRGGRGRGRGF 114
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 123 TALESLNGVELEGRAMRVSLAQGRRS 148
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
Score = 105 (42.0 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
+S++ V+ DRET RSRGF FVT ++D + ++G+ GR +RV+ + K
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 84
Score = 41 (19.5 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 91 GNVVGARVLYDGESGRSRGY 110
G G R + G GR RG+
Sbjct: 95 GGSAGGRGFFRGGRGRGRGF 114
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 123 TALESLNGVELEGRAMRVSLAQGRRS 148
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
Score = 105 (42.0 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
+S++ V+ DRET RSRGF FVT ++D + ++G+ GR +RV+ + K
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 84
Score = 41 (19.5 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 91 GNVVGARVLYDGESGRSRGY 110
G G R + G GR RG+
Sbjct: 95 GGSAGGRGFFRGGRGRGRGF 114
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 123 TALESLNGVELEGRAMRVSLAQGRRS 148
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
Score = 105 (42.0 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
+S++ V+ DRET RSRGF FVT ++D + ++G+ GR +RV+ + K
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 84
Score = 41 (19.5 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 91 GNVVGARVLYDGESGRSRGY 110
G G R + G GR RG+
Sbjct: 95 GGSAGGRGFFRGGRGRGRGF 114
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 123 TALESLNGVELEGRAMRVSLAQGRRS 148
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
Score = 105 (42.0 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
+S++ V+ DRET RSRGF FVT ++D + ++G+ GR +RV+ + K
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 84
Score = 41 (19.5 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 91 GNVVGARVLYDGESGRSRGY 110
G G R + G GR RG+
Sbjct: 95 GGSAGGRGFFRGGRGRGRGF 114
WARNING: HSPs involving 1228 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 148 148 0.00068 104 3 11 22 0.48 31
30 0.39 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1478
No. of states in DFA: 568 (60 KB)
Total size of DFA: 127 KB (2081 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.91u 0.07s 14.98t Elapsed: 00:00:01
Total cpu time: 14.94u 0.08s 15.02t Elapsed: 00:00:01
Start: Fri May 10 12:31:43 2013 End: Fri May 10 12:31:44 2013
WARNINGS ISSUED: 2