BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032044
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 97/152 (63%), Gaps = 10/152 (6%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK------ 58
+ V+YD+ TGRSRGF FVTMS+ E+ A + +G E GR LRVN P+ +
Sbjct: 116 VEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFR 175
Query: 59 ----LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVC 114
++ +++VGNL+W V ++L F E G VV A+V+YD +SGRSRG+GFV
Sbjct: 176 GGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVT 235
Query: 115 YSTKAEMETALESLNGVELEGRAMRVSLAQGR 146
YS+ E+ A+ESL+GV+L GRA+RVS A+ R
Sbjct: 236 YSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 125
D K+FVGNL +S + +L + F+ GNV V+YD +GRSRG+GFV S+K E+E A
Sbjct: 86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145
Query: 126 ESLNGVELEGRAMRVS 141
+ NG EL+GRA+RV+
Sbjct: 146 QQFNGYELDGRALRVN 161
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58
V+YDR++GRSRGF FVT S+ E+ N IE+LDG + GR +RV+ ++ P+
Sbjct: 219 VVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPR 270
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 97/158 (61%), Gaps = 16/158 (10%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK------ 58
+ V+YD+ TGRSRGF FVTMS+ E+ A + +G E GR LRVN P+ +
Sbjct: 116 VEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFR 175
Query: 59 ----------LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSR 108
++ +++VGNL+W V ++L F E G VV A+V+YD +SGRSR
Sbjct: 176 ENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSR 235
Query: 109 GYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146
G+GFV YS+ E+ A+ESL+GV+L GRA+RVS A+ R
Sbjct: 236 GFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 125
D K+FVGNL +S + +L + F+ GNV V+YD +GRSRG+GFV S+K E+E A
Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145
Query: 126 ESLNGVELEGRAMRVS 141
+ NG EL+GRA+RV+
Sbjct: 146 QQFNGYELDGRALRVN 161
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58
V+YDR++GRSRGF FVT S+ E+ N IE+LDG + GR +RV+ ++ P+
Sbjct: 225 VVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPR 276
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 96/144 (66%), Gaps = 5/144 (3%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS----DKPKPKLPLY 62
V+Y+RET RSRGF FVTMSTVE+ + +E + GR+L VN + +P+ + P
Sbjct: 128 VIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPE-RAPRT 186
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
+ ++++VGN+ W + L Q F E+G VV ARV++D ESGRSRG+GFV S++AEM
Sbjct: 187 FQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMS 246
Query: 123 TALESLNGVELEGRAMRVSLAQGR 146
A+ +L+G L+GR +RV+ A+ R
Sbjct: 247 EAIANLDGQTLDGRTIRVNAAEER 270
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 52/83 (62%)
Query: 66 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 125
D KLFVGNL + + +E L Q FQ+ G V A V+Y+ E+ RSRG+GFV ST E + A+
Sbjct: 96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAV 155
Query: 126 ESLNGVELEGRAMRVSLAQGRRS 148
E + +L GR + V+ A R S
Sbjct: 156 ELYSQYDLNGRLLTVNKAAPRGS 178
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 5/144 (3%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS----DKPKPKLPLY 62
V+Y+RET +SRGF FVTMS+V++ +E + + GR+L VN + +P+ + P
Sbjct: 181 VIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPE-RAPRV 239
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
E F+++VGNL W V L Q F E+G VV ARV+YD E+GRSRG+GFV S E+
Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Query: 123 TALESLNGVELEGRAMRVSLAQGR 146
A+ +L+G LEGRA+RV++A+ R
Sbjct: 300 EAISALDGQNLEGRAIRVNVAEER 323
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLFVGNL++ V +++L F++ G V A V+Y+ E+ +SRG+GFV S+ E ETA+E
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 128 LNGVELEGRAMRVSLAQGRRS 148
N +L GR + V+ A R S
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGS 231
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58
V+YDRETGRSRGF FVTMS V++ N I LDG+ GR +RVN +++ P+
Sbjct: 275 VVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 98/144 (68%), Gaps = 5/144 (3%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS----DKPKPKLPLY 62
V+Y+R+T +SRGF FVTMSTVE+ +E + + GR+L VN + ++P+ + P
Sbjct: 167 VIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPE-RPPRT 225
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
E ++++VGN+ W + L Q F E+G VV ARV+YD E+GRSRG+GFV +++AEM
Sbjct: 226 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMS 285
Query: 123 TALESLNGVELEGRAMRVSLAQGR 146
A+ +L+G L+GR +RV++A+ R
Sbjct: 286 DAIANLDGQSLDGRTIRVNVAEDR 309
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLFVGNL + V +E L + F++ G V A V+Y+ ++ +SRG+GFV ST E E A+E
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 128 LNGVELEGRAMRVSLAQGR 146
N ++ GR + V+ A R
Sbjct: 197 YNRYDVNGRLLTVNKAARR 215
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 96/144 (66%), Gaps = 5/144 (3%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD 66
V+Y+RET RSRGF FVTMSTVE+ +E L+G + GR L VN + P+ D
Sbjct: 86 VIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKA-APRGSPERAPRGD 144
Query: 67 F----KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
F +++VGNL W V T L Q F E+G VV ARV+ D E+GRSRG+GFV S+++E+
Sbjct: 145 FEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVN 204
Query: 123 TALESLNGVELEGRAMRVSLAQGR 146
A+ +L+G L+GRA+RV++A+ R
Sbjct: 205 DAIAALDGQTLDGRAVRVNVAEER 228
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 9/98 (9%)
Query: 51 FSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 110
FS+ P+ + KLFVGNL + V +E L F G V A V+Y+ E+ RSRG+
Sbjct: 48 FSEPPE---------EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGF 98
Query: 111 GFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRRS 148
GFV ST E E A+E LNG +++GR + V+ A R S
Sbjct: 99 GFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGS 136
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 98/171 (57%), Gaps = 29/171 (16%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLY-- 62
+ V+YD+ TGRSRGF FVTMST E+ A + +G E GR +RVN P +
Sbjct: 116 VEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFG 175
Query: 63 ---------------------------AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG 95
++ +++VGNLSW V +L + F E GNVV
Sbjct: 176 GGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVD 235
Query: 96 ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146
A+V+YD +SGRSRG+GFV YS+ E+ A++SLNGV+L+GR++RVS A+ R
Sbjct: 236 AKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 60 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
P ++E D KLFVGNL +SV + +L F+ GNV V+YD +GRSRG+GFV STK
Sbjct: 81 PRFSE-DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKE 139
Query: 120 EMETALESLNGVELEGRAMRVS 141
E+E A + NG E++GRA+RV+
Sbjct: 140 EVEAAEQQFNGYEIDGRAIRVN 161
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 97/154 (62%), Gaps = 12/154 (7%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPK----- 56
++ + ++YDR T RSRGFAFVTM +VE+ I DG + GR ++VNF + P+
Sbjct: 140 VANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGERE 199
Query: 57 -------PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRG 109
+ ++ KL+V NLSW++T++ L AF + + A+V+YD SGRSRG
Sbjct: 200 VMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRG 259
Query: 110 YGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 143
+GF+ +S+ M +AL+++N VELEGR +R+++A
Sbjct: 260 FGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
+L+VGNL +S+T+ L++ F E G V ++YD + RSRG+ FV + E + A+
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 128 LNGVELEGRAMRVSLAQGRR 147
+G ++ GR ++V+ + R
Sbjct: 175 FDGSQVGGRTVKVNFPEVPR 194
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 57
V+YDR +GRSRGF F+T S+ E N+ ++ ++ E GR LR+N + + P
Sbjct: 248 VIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAP 298
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 29/171 (16%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLY-- 62
+ V+YD+ +GRSRGF FVTMST E+ A + +G E GR +RVN P +
Sbjct: 117 VEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFG 176
Query: 63 ---------------------------AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG 95
++ +++VGNLSW V +L + F E GNVV
Sbjct: 177 GGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVD 236
Query: 96 ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146
A+V+YD +SGRSRG+GFV YS+ E+ A++SLNG++L+GR++RVS A+ R
Sbjct: 237 AKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 60 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
P ++E D KLFVGNL +SV + +L F+ GNV V+YD SGRSRG+GFV STK
Sbjct: 82 PRFSE-DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKE 140
Query: 120 EMETALESLNGVELEGRAMRVS 141
E+E A + NG E++GRA+RV+
Sbjct: 141 EVEAAEQQFNGYEIDGRAIRVN 162
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 96/169 (56%), Gaps = 32/169 (18%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V+YD+ TGRSRGF FVTMS+V + A + +G E GR LRVN + P PK E
Sbjct: 120 VEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN-AGPPPPKR----E 174
Query: 65 TDF---------------------------KLFVGNLSWSVTTESLTQAFQEYGNVVGAR 97
F +++VGNLSW V +L F E G VV AR
Sbjct: 175 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 234
Query: 98 VLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 146
V+YD +SGRS+G+GFV Y + E++ A++SL+G +L+GR +RVS A+ R
Sbjct: 235 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 51 FSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 110
F+D PK ++ D KLFVGNL ++V + L Q F+ GNV V+YD +GRSRG+
Sbjct: 76 FADVAPPKEQSFS-ADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGF 134
Query: 111 GFVCYSTKAEMETALESLNGVELEGRAMRVS 141
GFV S+ +E+E A + NG EL+GR +RV+
Sbjct: 135 GFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58
V+YDR++GRS+GF FVT + ++ I++LDG + GR +RV+ ++ P+
Sbjct: 235 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPR 286
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 95/146 (65%), Gaps = 9/146 (6%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL----- 61
V+YD+ +GRSR F FVTM TVED NAVIE L+ E GR ++VN ++KP + +
Sbjct: 115 VMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQA 174
Query: 62 ----YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYST 117
+ E+ +K+++GNL+ +VT E L F E G V+GA+V + +S G+GFV +S+
Sbjct: 175 EDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSS 234
Query: 118 KAEMETALESLNGVELEGRAMRVSLA 143
+ E+E A+++LN LEG+ +RV+ A
Sbjct: 235 EEEVEAAIQALNNSVLEGQKIRVNKA 260
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
+L+VGN+ ++ + L +E+G + A V+YD SGRSR +GFV T + +E
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144
Query: 128 LNGVELEGRAMRVSLAQ 144
LN E+ GR ++V++ +
Sbjct: 145 LNDTEIGGRKIKVNITE 161
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 57/79 (72%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
+L+VGNLSW V +L F E G VV ARV+YD +SGRS+G+GFV S+ E++ A+ S
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 128 LNGVELEGRAMRVSLAQGR 146
LNG +L+GR +RVS A+ R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 52/77 (67%)
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
D KLFVGNLS++V + L Q F+ GNV V+YD +GRSRG+GFV ST AE+E A
Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 125 LESLNGVELEGRAMRVS 141
+ NG E EGR +RV+
Sbjct: 157 AQQFNGYEFEGRPLRVN 173
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58
+ V+YD+ TGRSRGF FVTMST + A + +G E+ GR LRVN + P PK
Sbjct: 128 VEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN-AGPPPPK 180
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 37/52 (71%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58
V+YDR++GRS+GF FVT+S+ ++ I +L+G + GR +RV+ ++ P+
Sbjct: 288 VIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 339
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 89/145 (61%), Gaps = 4/145 (2%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
++ + ++ D+ ++ +AFV D N ++ L+G++ I+++N++ + +
Sbjct: 101 IANIKIMIDKNN-KNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQS--- 156
Query: 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
++ F LFVG+L+ +V E+L AF+++ + + V++D ++G SRGYGFV ++++ +
Sbjct: 157 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 216
Query: 122 ETALESLNGVELEGRAMRVSLAQGR 146
+ A++S+ G +L GR +R++ A R
Sbjct: 217 QNAMDSMQGQDLNGRPLRINWAAKR 241
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+D L+VGNL ++T + L Q FQ G + +++ D ++ ++ Y FV Y + A
Sbjct: 73 SDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIA 131
Query: 125 LESLNGVELEGRAMRVSLA 143
L++LNG ++E ++++ A
Sbjct: 132 LQTLNGKQIENNIVKINWA 150
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 62/86 (72%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A+ +++ FVG L W+ +SL AF +YG+V+ ++++ D E+GRSRG+GFV +++ M
Sbjct: 2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61
Query: 123 TALESLNGVELEGRAMRVSLAQGRRS 148
A+E++NG +L+GR + V+ AQ RRS
Sbjct: 62 QAIEAMNGQDLDGRNITVNEAQSRRS 87
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50
++ DRETGRSRGF FVT ++ E IE ++G++ GR + VN
Sbjct: 37 IITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVN 80
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 60/82 (73%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A+ +++ FVG L+W+ E+L QAF +G V+ ++V+ D E+GRSRG+GFV +S++ M
Sbjct: 4 ADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSML 63
Query: 123 TALESLNGVELEGRAMRVSLAQ 144
A+E++NG EL+GR + V+ AQ
Sbjct: 64 DAIENMNGKELDGRNITVNQAQ 85
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50
V+ DRETGRSRGF FVT S+ + IEN++G+E GR + VN
Sbjct: 39 VITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVN 82
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 58/82 (70%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
AE +++ FVG L+W+ ESL QAF ++G++ ++++ D E+GRSRG+GFV + + M
Sbjct: 2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61
Query: 123 TALESLNGVELEGRAMRVSLAQ 144
A+E +NG EL+GR + V+ AQ
Sbjct: 62 DAIEGMNGQELDGRNITVNEAQ 83
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50
++ ++ DRETGRSRGF FVT + IE ++G+E GR + VN
Sbjct: 32 ITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVN 80
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 60/82 (73%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A+ +++ FVG L+W+ + ESL AF YG ++ ++V+ D E+GRSRG+GFV +S++ M
Sbjct: 4 ADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSML 63
Query: 123 TALESLNGVELEGRAMRVSLAQ 144
A+E++NG EL+GR + V+ AQ
Sbjct: 64 DAIENMNGKELDGRNITVNQAQ 85
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50
V+ DRETGRSRGF FVT S+ IEN++G+E GR + VN
Sbjct: 39 VITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVN 82
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 57/82 (69%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
+E +++ FVG L+W+ E L + F ++G+V+ ++++ D ESGRSRG+GFV + + M
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 123 TALESLNGVELEGRAMRVSLAQ 144
A+E +NG EL+GR + V+ AQ
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQ 83
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50
++ DRE+GRSRGF FVT + IE ++G+E GR++ VN
Sbjct: 37 IINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 14/146 (9%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP----LYAETDF 67
+ G+SRGF FV E ++ ++ +E G+ L V + K + +L LY T
Sbjct: 274 QEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRL 333
Query: 68 K---------LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+ LFV NL S+ +E L + F+ +G + ARV+ D ++G+S+G+GFVC+S+
Sbjct: 334 EKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVD-DAGKSKGFGFVCFSSP 392
Query: 119 AEMETALESLNGVELEGRAMRVSLAQ 144
E A+ +N ++G+ + V+LAQ
Sbjct: 393 EEATKAITEMNQRMIQGKPLYVALAQ 418
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE--TDF-K 68
E G+S+ F FV T E A IEN++G R + V + + + E +F
Sbjct: 181 ELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTN 240
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
++V NL+ V + F+ +G V + D E G+SRG+GFV + A++ +
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFENHESALNAVKEM 299
Query: 129 NGVELEGRAMRVSLAQGRR 147
N E++G+ + V AQ +R
Sbjct: 300 NDKEIDGQKLYVGRAQKKR 318
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG L+ SV L + F G V RV D + +S GY +V + A+ A+E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 129 NGVELEGRAMRVSLAQ 144
N ++GR R+ +Q
Sbjct: 120 NYSLVDGRPCRIMWSQ 135
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V ++ I L G+ LG + V S K +L A
Sbjct: 197 IISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNL 255
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + ++ D ++GRS+GYGF+ +S
Sbjct: 256 QKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 315
Query: 120 EMETALESLNGVELEGRAMRV 140
ALE LNG EL GR MRV
Sbjct: 316 CARRALEQLNGFELAGRPMRV 336
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV 49
+ + ++ D +TGRS+G+ F+T S E +E L+G E GR +RV
Sbjct: 289 IDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLFVG LSW SL QAF +G V A V+ D E+GRSRG+GFV +S + A++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 128 LNGVELEGRAMRVSLAQGRRS 148
++G EL GR +RV+LA R S
Sbjct: 96 MDGKELNGRQIRVNLATERSS 116
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS 52
+++ TV+ DRETGRSRGF FV+ S + N I+ +DG+E GR +RVN +
Sbjct: 61 VTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 50 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD-TSNHFHVFVGDLSPEI 108
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +
Sbjct: 109 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 168
Query: 139 RVSLA 143
R + A
Sbjct: 169 RTNWA 173
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 23/155 (14%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
+S V+ D TG+S+G+ FV+ D I ++ G+ GR +R N++ + P
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 62 YAETDFK-----------------LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES 104
E + K ++ G ++ +T + + Q F +G ++ RV +
Sbjct: 183 TQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--- 239
Query: 105 GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 139
+GY FV +ST A+ S+NG +EG ++
Sbjct: 240 ---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 271
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VGNLS VT + Q F + G +++ + S Y FV + + AL ++
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAM 68
Query: 129 NGVELEGRAMRVSLA 143
NG ++ G+ ++V+ A
Sbjct: 69 NGRKILGKEVKVNWA 83
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 21/147 (14%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK----- 68
G+S+GF FV+ ED N +E ++G+E G+I+ F + + K+ AE K
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII---FVGRAQKKVERQAELKRKFEQLK 284
Query: 69 -----------LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYST 117
L++ NL ++ E L + F +G++ A+V+ E GRS+G+GFVC+S+
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 118 KAEMETALESLNGVELEGRAMRVSLAQ 144
E A+ +NG + + + V+LAQ
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGR---ILRVNFSDKPKPKLPLYAETDFKLFVG 72
S+G+AFV T E + IE ++G R + R + + +L A+ +++
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
N V ESL + F ++G + +V+ D +G+S+G+GFV Y + A+E +NG E
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 133 LEGRAMRVSLAQGR 146
+ G+ + V AQ +
Sbjct: 256 ISGKIIFVGRAQKK 269
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQR-DPSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GY FV + T+ + A
Sbjct: 99 GN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGR 40
E GRS+GF FV S+ E+ + ++GR
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGR 356
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 19 FAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV 78
+ FV D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD-TSNHFHVFVGDLSPEI 125
Query: 79 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 138
TTE + AF +G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 139 RVSLA 143
R + A
Sbjct: 186 RTNWA 190
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 23/155 (14%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
+S V+ D TG+S+G+ FV+ D I ++ G+ GR +R N++ + P
Sbjct: 140 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 199
Query: 62 YAETDFK-----------------LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES 104
ET+ K ++ G ++ +T + + Q F +G ++ RV +
Sbjct: 200 TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--- 256
Query: 105 GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 139
+GY FV +ST A+ S+NG +EG ++
Sbjct: 257 ---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 58/81 (71%)
Query: 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 123
+ +++ FVG L+W+ +L AF +YG+V+ ++++ D E+GRSRG+GFV + + M+
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 124 ALESLNGVELEGRAMRVSLAQ 144
A+E +NG +L+GR++ V+ AQ
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ 85
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50
++ DRETGRSRGF FVT + IE ++G++ GR + VN
Sbjct: 39 IINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVN 82
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 79.7 bits (195), Expect = 6e-15, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 19/148 (12%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNFSDKPK 56
E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F +
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQ 285
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
++ Y + L+V NL + E L +AF +G + A+V+ +G GRS+G+GFVC+S
Sbjct: 286 DRITRYQVVN--LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFS 341
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
+ E A+ +NG + + + V+LAQ
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-KLFVG 72
S+G+ FV T E I+ ++G GR + V F + + + L A +F +++
Sbjct: 137 SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
N + E L F ++G + +V+ D ESG+S+G+GFV + + + A++ +NG E
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 133 LEGRAMRVSLAQGR 146
L G+ + V AQ +
Sbjct: 256 LNGKQIYVGRAQKK 269
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 10 DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKL 69
D T S +A+V +D ++ ++ G+ +R+ +S + P L + +
Sbjct: 45 DLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQR-DPSLRKSGVGN--I 101
Query: 70 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 129
FV NL S+ ++L +GN++ V+ D E+G S+GYGFV + T E A++ +N
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKMN 159
Query: 130 GVELEGRAMRVSLAQGRR 147
G+ L GR + V + R+
Sbjct: 160 GMLLNGRKVFVGQFKSRK 177
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ R+ D + S Y +V +
Sbjct: 3 PSTPSYPTA--SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMWSQ 88
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLF+G LSW SL AF +G+VV A+V+ D E+GRSRG+GFV ++ + A+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 128 LNGVELEGRAMRVSLAQGRRS 148
++G EL GR +RV+ A R S
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP 60
V+ DRETGRSRGF FV + A I +DG+E GR +RVN ++ +P P
Sbjct: 66 VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND-RPSAP 118
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V V I L G+ LG + V S K + A
Sbjct: 184 MISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNL 242
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV 49
+ + ++ D ETGRS+G+ F+T S E +E L+G E GR ++V
Sbjct: 276 IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V V I L G+ LG + V S K + A
Sbjct: 184 MISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNL 242
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV 49
+ + ++ D ETGRS+G+ F+T S E +E L+G E GR ++V
Sbjct: 276 IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET- 65
++ DR + RS+G A+V V I L G+ LG + V S K + A
Sbjct: 184 MISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNL 242
Query: 66 ------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 119
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S
Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 120 EMETALESLNGVELEGRAMRV 140
+ ALE LNG EL GR M+V
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV 49
+ + ++ D ETGRS+G+ F+T S E +E L+G E GR ++V
Sbjct: 276 IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 16/158 (10%)
Query: 2 LSKLTVLY--DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 59
K+T +Y + G+S+GF FV E +E L+ +E G+ + V + K + +L
Sbjct: 256 FGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERL 315
Query: 60 -------------PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR 106
L LFV NL ++ +E L + F+ +G + A+V+ D E+G+
Sbjct: 316 EELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGK 374
Query: 107 SRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
S+G+GFVC++T E A+ +N + G+ + V+LAQ
Sbjct: 375 SKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQ 412
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
AE L+VG L+ SV +L + F G V RV D S +S GY +V Y + E
Sbjct: 48 AENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGE 107
Query: 123 TALESLNGVELEGRAMRVSLAQ----GRRS 148
A+E LN +EGR R+ +Q RRS
Sbjct: 108 KAIEELNYNPIEGRPCRIMWSQRDPSARRS 137
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE--TDF-K 68
E G+S+ F FV T E A IEN++G R + V K + + E +F
Sbjct: 175 EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTN 234
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
++V N+ + + ES + F +G + + D + G+S+G+GFV + A+E L
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKD-QDGKSKGFGFVNFEDHESAVKAVEEL 293
Query: 129 NGVELEGRAMRVSLAQGRR 147
N E+ G+ + V AQ +R
Sbjct: 294 NDKEINGQKIYVGRAQKKR 312
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
E G+S+GF FV +T E+ I ++ R G+ L V + +
Sbjct: 371 EAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQR 413
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 85/157 (54%), Gaps = 18/157 (11%)
Query: 4 KLTVLY---DRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL- 59
K+T +Y D E G+S+GF FV E ++ L+ +E G+ + V + K + +L
Sbjct: 257 KITSIYLEKDHE-GKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLE 315
Query: 60 ---PLYAETDFK---------LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRS 107
Y T + LF+ NL ++ +E L + F+ +G++ ARV+ D E+G+S
Sbjct: 316 ELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVD-ETGKS 374
Query: 108 RGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
+G+GFVC+S+ E A+ +N + G+ + V+LAQ
Sbjct: 375 KGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQ 411
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 42/82 (51%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
++T L+VG L+ SV L + F G V RV D + +S GY +V + + E
Sbjct: 47 SDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGE 106
Query: 123 TALESLNGVELEGRAMRVSLAQ 144
A+E LN +EGR R+ +Q
Sbjct: 107 KAIEDLNYSLIEGRPCRIMWSQ 128
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDG-----RE-YLGRILRVNFSDKPKPKLPLYAET 65
+ G S+ F FV T E A IEN++G RE Y+G+ + S K + +
Sbjct: 174 DMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGK----HISKKDRESKFEEMKA 229
Query: 66 DF-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+F ++ N+ + E + F+ YG + + D E G+S+G+GFV + A
Sbjct: 230 NFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHE-GKSKGFGFVNFENHESAVKA 288
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
++ LN E+ G+ + V AQ +R
Sbjct: 289 VDELNDKEINGQKIYVGRAQKKR 311
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
ETG+S+GF FV S+ E+ I ++ R G+ L V + +
Sbjct: 370 ETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQR 412
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 19/148 (12%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNFSDKPK 56
E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F +
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+GFVC+S
Sbjct: 286 DRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFS 341
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
+ E A+ +NG + + + V+LAQ
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR-DPSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGR---ILRVNFSDKPKPKLPLYAETDFKLFVG 72
S+G+ FV T E IE ++G R + R + + +L A+ +++
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
N + E L F ++G + +V+ D ESG+S+G+GFV + + + A++ +NG E
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 133 LEGRAMRVSLAQGR 146
L G+ + V AQ +
Sbjct: 256 LNGKQIYVGRAQKK 269
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L T L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMA--SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 19/148 (12%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNFSDKPK 56
E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F +
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+GFVC+S
Sbjct: 286 DRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFS 341
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
+ E A+ +NG + + + V+LAQ
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR-DPSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGR---ILRVNFSDKPKPKLPLYAETDFKLFVG 72
S+G+ FV T E IE ++G R + R + + +L A+ +++
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
N + E L F ++G + +V+ D ESG+S+G+GFV + + + A++ +NG E
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 133 LEGRAMRVSLAQGR 146
L G+ + V AQ +
Sbjct: 256 LNGKQIYVGRAQKK 269
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMA--SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 19/148 (12%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNFSDKPK 56
E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F +
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+GFVC+S
Sbjct: 286 DRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFS 341
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
+ E A+ +NG + + + V+LAQ
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR-DPSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGR---ILRVNFSDKPKPKLPLYAETDFKLFVG 72
S+G+ FV T E IE ++G R + R + + +L A+ +++
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
N + E L F ++G + +V+ D ESG+S+G+GFV + + + A++ +NG E
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 133 LEGRAMRVSLAQGR 146
L G+ + V AQ +
Sbjct: 256 LNGKQIYVGRAQKK 269
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMA--SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 57/81 (70%)
Query: 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 123
+ +++ FVG L+W+ +L AF +YG V+ ++++ D E+GRSRG+GFV + + M+
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64
Query: 124 ALESLNGVELEGRAMRVSLAQ 144
A+E +NG +L+GR++ V+ AQ
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ 85
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50
++ DRETGRSRGF FVT + IE ++G++ GR + VN
Sbjct: 39 IINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVN 82
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 19/148 (12%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNFSDKPK 56
E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F +
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+GFVC+S
Sbjct: 286 DRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFS 341
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
+ E A+ +NG + + + V+LAQ
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR-DPSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGR---ILRVNFSDKPKPKLPLYAETDFKLFVG 72
S+G+ FV T E IE ++G R + R + + +L A+ +++
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
N + E L + F ++G + +V+ D ESG+S+G+GFV + + + A++ +NG E
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 133 LEGRAMRVSLAQGR 146
L G+ + V AQ +
Sbjct: 256 LNGKQIYVGRAQKK 269
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMA--SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 19/148 (12%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNFSDKPK 56
E+G+S+GF FV+ ED ++ ++G+E Y+GR L+ F +
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
++ Y + L+V NL + E L + F +G + A+V+ +G GRS+G+GFVC+S
Sbjct: 286 DRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFS 341
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
+ E A+ +NG + + + V+LAQ
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR-DPSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
+E +NG+ L R + V + R+
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRK 177
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGR---ILRVNFSDKPKPKLPLYAETDFKLFVG 72
S+G+ FV T E IE ++G R + R + + +L A+ +++
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
N + E L + F ++G + +V+ D ESG+S+G+GFV + + + A++ +NG E
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 133 LEGRAMRVSLAQGR 146
L G+ + V AQ +
Sbjct: 256 LNGKQIYVGRAQKK 269
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMA--SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 57/81 (70%)
Query: 64 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 123
+ +++ FVG L+W+ SL AF ++G +V ++++ D E+GRSRG+GFV + + M+
Sbjct: 5 DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKD 64
Query: 124 ALESLNGVELEGRAMRVSLAQ 144
A+E +NG +L+GR++ V+ AQ
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ 85
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50
++ DRETGRSRGF FVT + IE ++G++ GR + VN
Sbjct: 39 IINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVN 82
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 23/152 (15%)
Query: 11 RETGRSRGFAFVTMSTVEDCNAVIENLDGRE-------YLGRI---------LRVNFSDK 54
+E G+S+GF FV T E A ++ L+G++ Y+ R L+ F +
Sbjct: 217 KEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEEL 276
Query: 55 PKPKLPLYAETDF--KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 112
+ + E+ F L+V NL ++ + L AF YGN+ A+V+ D E GRS+G+GF
Sbjct: 277 KQKR----HESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGF 331
Query: 113 VCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
VC++ +E A+ LNG + + + V+LAQ
Sbjct: 332 VCFNAASEATCAVTELNGRVVGSKPLYVALAQ 363
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 70/136 (51%), Gaps = 4/136 (2%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ + +R+ +S + P L
Sbjct: 31 IRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQR-DPSLRRSGV 89
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL ++ +++ F +GN++ +V D E G S+GYGFV + T+ T+
Sbjct: 90 GN--VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146
Query: 125 LESLNGVELEGRAMRV 140
++ +NG+ L G+ + V
Sbjct: 147 IDKVNGMLLNGKKVYV 162
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L V L F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 129 NGVELEGRAMRVSLAQ 144
N + + +R+ +Q
Sbjct: 64 NFDLVRNKPIRIMWSQ 79
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 56/82 (68%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
+E +++ FVG L+W+ L + F ++G V+ ++++ D E+GRSRG+GFV + + M+
Sbjct: 2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMK 61
Query: 123 TALESLNGVELEGRAMRVSLAQ 144
A++ +NG EL+GR + V+ AQ
Sbjct: 62 DAIDEMNGKELDGRTITVNEAQ 83
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN 50
++ DRETGRSRGF FVT + I+ ++G+E GR + VN
Sbjct: 37 IINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVN 80
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP----------L 61
+T + + FV A + ++GR+ +G+ ++VN++ P +
Sbjct: 41 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQ 100
Query: 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
++ F +FVG+LS +TTE + AF +G + ARV+ D +G+S+GYGFV + K +
Sbjct: 101 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 122 ETALESLNGVELEGRAMRVSLA 143
E A++ + G L GR +R + A
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWA 182
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 23/155 (14%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK--PKPKL 59
+S V+ D TG+S+G+ FV+ D I+ + G+ GR +R N++ + P PK
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 60 PLYAET---------------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES 104
+ T + ++ G ++ +T + + Q F +G ++ RV D
Sbjct: 192 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD--- 248
Query: 105 GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 139
+GY FV +++ A+ S+NG +EG ++
Sbjct: 249 ---KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VGNLS VT + Q F + G +++ D + + Y FV + AL ++
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 129 NGVELEGRAMRVSLA 143
NG ++ G+ ++V+ A
Sbjct: 67 NGRKIMGKEVKVNWA 81
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 76.3 bits (186), Expect = 7e-14, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKP---KPK 58
++ +T++ D + G+S+GF F + E V+EN +G+ + G+ + + K + +
Sbjct: 214 ITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAE 272
Query: 59 LPLYAETDFK---LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCY 115
L ET ++ L++ N+ S+ + L + F ++G + A V+ D ++ S+G+GFVCY
Sbjct: 273 LKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332
Query: 116 STKAEMETALESLNGVELEGRAMRVSLAQ 144
+ E A+ +NG + + + V+LAQ
Sbjct: 333 TAPDEATRAVTEMNGRMIGTKPLYVALAQ 361
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 1 MLSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP 60
++S + V D T RS +A+V D ++ L+ G+ R+ +S + P L
Sbjct: 35 LVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQR-DPSLR 93
Query: 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE 120
+ +F+ NL + ++L F +GN++ +V+ D + S+G+GFV Y T+
Sbjct: 94 KSGVGN--VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQES 150
Query: 121 METALESLNGVELEGRAMRV 140
+ A+ +NG+ + G+ + V
Sbjct: 151 ADKAIAKVNGMMINGQKVFV 170
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAETDF-KLFVGN 73
S+GF FV T E + I ++G G+ + V F + P E F +F N
Sbjct: 137 SKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQP--TEVKFTNVFFKN 194
Query: 74 LSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 133
LS V + L + Q+YG + ++ D + G+S+G+GF + + + +E+ NG
Sbjct: 195 LSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIF 253
Query: 134 EGRAMRVSLAQGR 146
G+ + AQ +
Sbjct: 254 HGKPIYAGRAQKK 266
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L V+ + L + F + G V RV D + RS Y +V Y A+ E AL++L
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 129 NGVELEGRAMRVSLAQ 144
N + G+A R+ +Q
Sbjct: 72 NNTPIRGKACRIMWSQ 87
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP----------L 61
+T + + FV A + ++GR+ +G+ ++VN++ P +
Sbjct: 41 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQ 100
Query: 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
++ F +FVG+LS +TTE + AF +G + ARV+ D +G+S+GYGFV + K +
Sbjct: 101 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 122 ETALESLNGVELEGRAMRVSLA 143
E A++ + G L GR +R + A
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWA 182
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 23/155 (14%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK--PKPKL 59
+S V+ D TG+S+G+ FV+ D I+ + G+ GR +R N++ + P PK
Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 191
Query: 60 PLYAET---------------DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES 104
+ T + ++ G ++ +T + + Q F +G ++ RV D
Sbjct: 192 TYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD--- 248
Query: 105 GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 139
+GY FV +S+ A+ S+NG +EG ++
Sbjct: 249 ---KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVK 280
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VGNLS VT + Q F + G +++ D + + Y FV + AL ++
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 129 NGVELEGRAMRVSLA 143
NG ++ G+ ++V+ A
Sbjct: 67 NGRKIMGKEVKVNWA 81
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 57/79 (72%)
Query: 68 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 127
KLF+G +++S+ +SL +AF +YG VV RV+ D E+GRSRG+GFV +++ +A+++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 128 LNGVELEGRAMRVSLAQGR 146
L+G +L GR ++V+ A R
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 37/47 (78%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSD 53
V+ DRETGRSRGF FVT ++ E ++ I+ LDGR+ GR+++VN+++
Sbjct: 71 VILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 117
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 15/156 (9%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK--- 58
++ L+++ D + + RGF FV + E ++ L+ +EY G+ L V + K +
Sbjct: 287 ITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEE 345
Query: 59 -------LPLYAETDFK---LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSR 108
+ L ++ LF+ NL V E L F +G + A+++ D E G+S+
Sbjct: 346 LRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSK 404
Query: 109 GYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 144
G+GFVCY+T E A+ +N L G+ + V+LAQ
Sbjct: 405 GFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL 61
++ + V D T RS G+A+V +ED ++ L+ GR R+ +S + P L
Sbjct: 106 VASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQR-DPSLRK 164
Query: 62 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 121
+ +F+ NL ++ ++L F +G ++ +V D E G ++GYGFV + +
Sbjct: 165 MGTGN--VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESA 221
Query: 122 ETALESLNGVELEGRAMRVSLAQGRR 147
A+E +NG+ L + + V RR
Sbjct: 222 NAAIEHVNGMLLNDKKVYVGHHVSRR 247
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
A T L+VG L SVT L + F G V RV D + RS GY +V + + E
Sbjct: 76 APTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGE 135
Query: 123 TALESLNGVELEGRAMRVSLAQ 144
AL+ LN ++GR R+ +Q
Sbjct: 136 KALDELNYTLIKGRPCRIMWSQ 157
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
E G+S+GF FV +T E+ N + ++ R G+ L V + +
Sbjct: 399 EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQR 441
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 19/148 (12%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV---------------NFSDKPK 56
+TGRSRGF FV E+ + ++G+E GR++ V F +
Sbjct: 226 DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQ 285
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
++ Y + L+V NL + + L + F YG + A+V+ +G G S+G+GFVC+S
Sbjct: 286 ERINRYQGVN--LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFS 341
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
+ E A+ +NG + + + V+LAQ
Sbjct: 342 SPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-KLFVG 72
SRG+ FV T E N I+ ++G R + V +F + + +L A+ +F +++
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
N + + L + F +GN + +V+ D ++GRSRG+GFV Y E + A+ +NG E
Sbjct: 197 NFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKE 255
Query: 133 LEGRAMRVSLAQGR 146
+ GR + V AQ R
Sbjct: 256 VNGRMIYVGRAQKR 269
Score = 62.8 bits (151), Expect = 8e-10, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A++ D ++ ++ GR +R+ +S + P L
Sbjct: 40 IRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQR-DPGLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E G SRGYGFV + T+ A
Sbjct: 99 GN--VFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETQEAANRA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
++++NG+ L R + V + RR
Sbjct: 155 IQTMNGMLLNDRKVFVGHFKSRR 177
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
L+VG+L VT L + F G ++ RV D + RS GY ++ + A+ E AL+++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 129 NGVELEGRAMRVSLAQ 144
N ++GR +R+ +Q
Sbjct: 73 NFEVIKGRPIRIMWSQ 88
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 78/146 (53%), Gaps = 19/146 (13%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGRE------YLGRI---------LRVNFSDKPKPK 58
G+SRGF FV+ ED +++++G++ ++GR L+ F + +
Sbjct: 228 GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDR 287
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+ Y + L+V NL + E L + F +G++ A+V+ +G GRS+G+GFVC+S+
Sbjct: 288 ITRYQGVN--LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSP 343
Query: 119 AEMETALESLNGVELEGRAMRVSLAQ 144
E A+ +NG + + + V+LAQ
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Query: 5 LTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE 64
+ V D T RS G+A+V D ++ ++ G+ +R+ +S + P L
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR-DPSLRKSGV 98
Query: 65 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 124
+ +F+ NL S+ ++L F +GN++ +V+ D E+G S+GYGFV + T+ E A
Sbjct: 99 GN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERA 154
Query: 125 LESLNGVELEGRAMRVSLAQGRR 147
++ +NG+ L R + V + R+
Sbjct: 155 IDKMNGMLLNDRKVFVGRFKSRK 177
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 16 SRGFAFVTMSTVEDCNAVIENLDGREYLGR---ILRVNFSDKPKPKLPLYAETDFKLFVG 72
S+G+ FV T E I+ ++G R + R + + +L A+ +++
Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 196
Query: 73 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 132
N + E L + F +YG + +V+ D + G+SRG+GFV + + + A++ +NG +
Sbjct: 197 NFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKD 255
Query: 133 LEGRAMRVSLAQGR 146
L G+A+ V AQ +
Sbjct: 256 LNGKAIFVGRAQKK 269
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 57 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 116
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMA--SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 117 TKAEMETALESLNGVELEGRAMRVSLAQ 144
A+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQ 88
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 58
E GRS+GF FV S+ E+ + ++GR + L V + + + +
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
+FVG LSWS+ E L + F+ G V+GARV+Y+ + RSRGYG+V + K+ E A++ +
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 129 NGVELEGRAMRVSLAQGR 146
G E++GR + ++ +
Sbjct: 230 QGKEIDGRPINCDMSTSK 247
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 7 VLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFS--------DKPKPK 58
V+Y+R T RSRG+ +V I+ + G+E GR + + S D+ K
Sbjct: 199 VIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKF 258
Query: 59 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 118
+E LF+GNLS++ +++ + F ++G VV R+ E+ + +G+G+V +S
Sbjct: 259 GDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNM 318
Query: 119 AEMETALESLNGVELEGRAMRVSLAQGR 146
+ + AL++L G ++ R +R+ + R
Sbjct: 319 EDAKKALDALQGEYIDNRPVRLDFSSPR 346
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 14/144 (9%)
Query: 14 GRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL----PLYAETDFK- 68
G+S+GF FV E +E L+ +E G+ + V + K + ++ Y T +
Sbjct: 270 GKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEK 329
Query: 69 --------LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE 120
LF+ NL ++ +E L + F+ +G + ARV+ D E+G+S+G+GFVC+S+ E
Sbjct: 330 LSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVD-ETGKSKGFGFVCFSSPEE 388
Query: 121 METALESLNGVELEGRAMRVSLAQ 144
A+ +N G+ + V+LAQ
Sbjct: 389 ATKAITEMNQRMFFGKPLYVALAQ 412
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 63 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 122
AE+ L+VG L+ SV +L + F G V RV D S +S GY +V Y + E
Sbjct: 48 AESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGE 107
Query: 123 TALESLNGVELEGRAMRVSLAQ----GRRS 148
A+E LN +EGR R+ +Q RRS
Sbjct: 108 KAIEELNYSPIEGRPCRIMWSQRDPSARRS 137
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 2 LSKLTVLYDRETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK-PKPKLP 60
+S + V D + +S G+A+V +ED IE L+ GR R+ +S + P +
Sbjct: 78 VSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMWSQRDPSAR-- 135
Query: 61 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE 120
D +F+ NL ++ ++L F +G ++ +V D + G+S+ +GFV Y T
Sbjct: 136 --RSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATD-DMGQSKCFGFVHYETAEA 192
Query: 121 METALESLNGVELEGRAMRV 140
E A+E++NG+ L R + V
Sbjct: 193 AEAAIENVNGMLLNDREVFV 212
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE--TDF-K 68
+ G+S+ F FV T E A IEN++G R + V K + + E +F
Sbjct: 175 DMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTN 234
Query: 69 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 128
++V N+ + E L + F YG + + D E G+S+G+GFV Y A+E L
Sbjct: 235 IYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAE-GKSKGFGFVNYEGHEAAVKAVEEL 293
Query: 129 NGVELEGRAMRVSLAQGRR 147
N E+ G+ + V AQ +R
Sbjct: 294 NDKEINGQKIYVGRAQKKR 312
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 12 ETGRSRGFAFVTMSTVEDCNAVIENLDGREYLGRILRVNFSDK 54
ETG+S+GF FV S+ E+ I ++ R + G+ L V + +
Sbjct: 371 ETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQR 413
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,621,722
Number of Sequences: 539616
Number of extensions: 1971259
Number of successful extensions: 8217
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 246
Number of HSP's that attempted gapping in prelim test: 5466
Number of HSP's gapped (non-prelim): 2357
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)