BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032045
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LJ98|PFD2_ARATH Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480
PE=2 SV=1
Length = 148
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/139 (71%), Positives = 118/139 (84%), Gaps = 1/139 (0%)
Query: 10 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGV 69
REP NEQ V NMY RSEL+QIYS IT+LEM+ SEHSLVINAI+PLD SRKC+RMIGGV
Sbjct: 11 REPPNEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGV 70
Query: 70 LVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESESKDDG 129
LVERTI EVLPAVQRNK+G+EEV+ +L E L KKK++++FEAKYKIRI K E ++K+ G
Sbjct: 71 LVERTIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRITKQE-DNKEGG 129
Query: 130 NRKEGSAQGVLVGPAGSSE 148
N+KEG+AQGVLVG A SS+
Sbjct: 130 NKKEGNAQGVLVGAASSSQ 148
>sp|A1A4P5|PFD2_BOVIN Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV=1
Length = 154
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 5/131 (3%)
Query: 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
EQ++A + +R E + SK ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT
Sbjct: 24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERT 82
Query: 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGN 130
+ EVLPA++ NKE I+++I L + L AK KE+++F K+ IR+ KP ++ +G
Sbjct: 83 VKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGA 142
Query: 131 RKEGSAQGVLV 141
+ S+ GVLV
Sbjct: 143 GAKASSAGVLV 153
>sp|Q9UHV9|PFD2_HUMAN Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 SV=1
Length = 154
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 5/131 (3%)
Query: 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
EQ++A + +R E + SK ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT
Sbjct: 24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERT 82
Query: 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGN 130
+ EVLPA++ NKE I+++I L + L AK KE+++F K+ IR+ KP ++ +G
Sbjct: 83 VKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGA 142
Query: 131 RKEGSAQGVLV 141
+ S+ GVLV
Sbjct: 143 GAKASSAGVLV 153
>sp|O70591|PFD2_MOUSE Prefoldin subunit 2 OS=Mus musculus GN=Pfdn2 PE=2 SV=2
Length = 154
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 91/131 (69%), Gaps = 5/131 (3%)
Query: 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
EQ++A + +R E + SK ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT
Sbjct: 24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERT 82
Query: 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGN 130
+ EVLPA++ NKE I+++I L++ L AK KE+++F K+ IR+ KP ++ +G
Sbjct: 83 VKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGA 142
Query: 131 RKEGSAQGVLV 141
+ S+ GVLV
Sbjct: 143 GAKASSAGVLV 153
>sp|B0BN18|PFD2_RAT Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 PE=2 SV=1
Length = 154
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 91/131 (69%), Gaps = 5/131 (3%)
Query: 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
EQ++A + +R E + SK ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT
Sbjct: 24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERT 82
Query: 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGN 130
+ EVLPA++ NKE I+++I L++ L AK KE+++F K+ IR+ KP ++ +G
Sbjct: 83 VKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGA 142
Query: 131 RKEGSAQGVLV 141
+ S+ GVLV
Sbjct: 143 GAKSSSAGVLV 153
>sp|Q55GN3|PFD2_DICDI Probable prefoldin subunit 2 OS=Dictyostelium discoideum GN=pfdn2
PE=3 SV=1
Length = 116
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 85/112 (75%)
Query: 7 TERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMI 66
+++++ + E + Y ++S+ QI S+I+E E + E+ LVINAI+ L+ +RKC+RM+
Sbjct: 2 SQQKQQLTENQIIEHYKDLKSQQQQIISRISEFESDVGEYGLVINAIQNLESNRKCFRMV 61
Query: 67 GGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118
GGVLVERT+ EVLP +++N++GI+EV+ +L+E L+ K KE++DF A YKI+I
Sbjct: 62 GGVLVERTVGEVLPQIKQNRDGIKEVVKKLDENLSIKTKELNDFVALYKIKI 113
>sp|Q9UTC9|PFD2_SCHPO Probable prefoldin subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC227.10 PE=3 SV=1
Length = 114
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 66/108 (61%)
Query: 11 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVL 70
+P +QI+ Y S +S L QI KI +LE +A EH LV++ + +D +R+C+RMI GVL
Sbjct: 4 QPSRQQILQTQYNSYKSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVL 63
Query: 71 VERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118
VERT+ V+P ++ +EGI+ + L + + E F+ KI++
Sbjct: 64 VERTVGTVVPILKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNKIQV 111
>sp|Q9VTE5|PFD2_DROME Probable prefoldin subunit 2 OS=Drosophila melanogaster
GN=l(3)01239 PE=2 SV=1
Length = 143
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
E IVA + +R+E + + + LEM+ EH VI ++ DP RKC+R IGGVL ERT
Sbjct: 13 EAIVA-QFQQLRNEQRNLVNSLNTLEMDLREHKTVIETLEAADPERKCFRQIGGVLCERT 71
Query: 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIR 119
+ EVLP + NK+ I + I + L+ K E++ F+ ++ I+IR
Sbjct: 72 VKEVLPQLVENKDFIAKTIQMVTNDLSKKGSELNKFKEEHNIKIR 116
>sp|P40005|PFD2_YEAST Prefoldin subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=GIM4 PE=1 SV=2
Length = 111
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%)
Query: 22 YTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPA 81
Y + L ++ +KI EL + EH++VI +K +P+RKCYRMIGG LVE + LP
Sbjct: 12 YNEYKQILEELQTKIIELGHDKDEHTIVIKTLKDAEPTRKCYRMIGGALVESDVQTSLPI 71
Query: 82 VQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK 120
++ KE IE I+++ E L KE ++ KI++ K
Sbjct: 72 LETKKENIEGTISKMKETLIQTAKEFEKWKKDNKIQVVK 110
>sp|Q9N5M2|PFD2_CAEEL Prefoldin subunit 2 OS=Caenorhabditis elegans GN=pdf-2 PE=3 SV=1
Length = 141
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%)
Query: 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISE 77
V + ++R + I +++T +E E E V+ IK L+P +KC+R+I LVE T+ +
Sbjct: 20 VVEKFKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLEPDQKCFRLISDTLVEYTVKD 79
Query: 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118
V+P +Q N + V +LN+ L K KE++ + + IR+
Sbjct: 80 VIPDLQNNIANLTIVSKQLNDQLVEKGKELNTHKTTHNIRL 120
>sp|A8WVJ9|PFD2_CAEBR Prefoldin subunit 2 OS=Caenorhabditis briggsae GN=pfd-2 PE=3 SV=1
Length = 142
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%)
Query: 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISE 77
V + +R + +I +++T +E E E V++ IK L P +KC+R+I LVE T+ +
Sbjct: 22 VVEKFKQLRDQQQEIATEVTRIEEERREIGRVLDVIKDLKPDQKCFRLISDSLVEYTVKD 81
Query: 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118
V+P ++ N + V +LNE L K KE++ + + IRI
Sbjct: 82 VIPDLENNMTNLGLVSKQLNEQLVEKGKELNQHKTAHNIRI 122
>sp|A8Y197|PFD6_CAEBR Probable prefoldin subunit 6 OS=Caenorhabditis briggsae GN=pfd-6
PE=3 SV=1
Length = 128
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 33 YSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEV 92
+S E+EM +E V + +D K Y+++G VLV + + E V++ E IE
Sbjct: 25 FSSRQEMEMRLTESKNVKAELDLMDSDSKVYKLMGPVLVRQDLEEARSTVEKRLEFIESE 84
Query: 93 IARL 96
I R+
Sbjct: 85 IKRV 88
>sp|Q1Q8Q0|RPOC_PSYCK DNA-directed RNA polymerase subunit beta' OS=Psychrobacter
cryohalolentis (strain K5) GN=rpoC PE=3 SV=1
Length = 1399
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 85 NKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESESKDDGNR-KEGSAQGVLVG 142
N +G + A +NEAL A +D KI++R E+ DDGNR KE S + + G
Sbjct: 514 NAKGEGMIFATVNEALRAIGS--NDLHVNAKIKVRVTETHIDDDGNRTKETSIKDTVAG 570
>sp|Q4FQH4|RPOC_PSYA2 DNA-directed RNA polymerase subunit beta' OS=Psychrobacter arcticus
(strain DSM 17307 / 273-4) GN=rpoC PE=3 SV=1
Length = 1406
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 85 NKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESESKDDGNR-KEGSAQGVLVG 142
N +G + A +NEAL A +D KI++R E+ DDGNR KE S + + G
Sbjct: 521 NAKGEGMIFATVNEALRAIGS--NDLHVNAKIKVRVTETHIDDDGNRTKETSIKDTVAG 577
>sp|P52554|PFD6_CAEEL Probable prefoldin subunit 6 OS=Caenorhabditis elegans GN=pfd-6
PE=2 SV=1
Length = 126
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 40/82 (48%)
Query: 20 NMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVL 79
N ++ + + ++ E+EM +E V + ++ K Y++IG VLV + + E
Sbjct: 12 NKLRTLEKDREKYFTSRQEMEMRLTESKNVKAELDLMESDSKVYKLIGAVLVRQDLEEAR 71
Query: 80 PAVQRNKEGIEEVIARLNEALA 101
V++ E I+ R+ +++
Sbjct: 72 STVEKRLEFIDSETKRVEASIS 93
>sp|Q819B3|SP2AB_BACCR Anti-sigma F factor OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=spoIIAB PE=3 SV=1
Length = 146
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 25 MRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQR 84
MR+E+N +S +++ E A H I LDP+ + I V+ E + ++ +
Sbjct: 1 MRNEMNLQFSALSQNESFARVHRAAF--IAQLDPTMEELTEIKTVVSEAVTNAIIHGYEG 58
Query: 85 NKEGIEEVIARLNEA---LAAKKKEISDF---EAKYKIRIRKPESESKDDG 129
N EGI + L EA L + + I F EA+ + KPE E G
Sbjct: 59 NAEGIVYISVILEEAMVKLTIRDEGIGIFNLDEARQPLFTTKPELERSGMG 109
>sp|Q9VW56|PFD6_DROME Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770
PE=2 SV=1
Length = 125
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 39 LEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISE 77
LE + +E+ V++ + L P K Y++ G VLV++ + E
Sbjct: 36 LESQLNENKCVLDELNLLGPDNKVYKLFGPVLVKQELEE 74
>sp|Q86A22|C515A_DICDI Probable cytochrome P450 515A1 OS=Dictyostelium discoideum
GN=cyp515A1 PE=3 SV=1
Length = 494
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 4/109 (3%)
Query: 12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLV 71
P N Q++ N+Y RS + S + + S+ L I SR+C G V
Sbjct: 390 PKNTQVIPNIYGCNRSNIESSESNVFNPDHFLSKDELNIGQCAFSFGSRQC----PGANV 445
Query: 72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK 120
+I ++ E +LN+ + +S FE K K+ IRK
Sbjct: 446 ADSIMFLVSTKLYKTFKFERTTTQLNDENGHFTRSLSPFEFKSKLIIRK 494
>sp|A4QJH4|YCF1_AETCO Putative membrane protein ycf1 OS=Aethionema cordifolium GN=ycf1-A
PE=3 SV=1
Length = 1774
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 53 IKPLDPSRK------CYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKE 106
I+PL S K YR IG LV + ++ QR+K+ IE+ I +L + +KK
Sbjct: 1608 IEPLRSSVKNDGQLIIYRTIGISLVHKNNHQI---SQRDKKKIEKSITQLKKKTVNRKKN 1664
Query: 107 ISDFEAKYKI 116
DF KI
Sbjct: 1665 NYDFFVPEKI 1674
>sp|Q8TYC7|PFDB_METKA Prefoldin subunit beta OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=pfdB PE=3 SV=1
Length = 120
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 32 IYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIE 90
I ++ +LE++ E + + ++ K Y+ +GG+L+E EV ++ KE +E
Sbjct: 22 IVAQKQQLELQLREIERALKELDEIEEDTKVYKTVGGLLIEADRDEVKEELEDRKETLE 80
>sp|Q9WU78|PDC6I_MOUSE Programmed cell death 6-interacting protein OS=Mus musculus
GN=Pdcd6ip PE=1 SV=3
Length = 869
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 67 GGV-LVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESES 125
GG+ V++ I E+ +QRN+E +EE + L+E A +D AK+K R ++ S
Sbjct: 428 GGIQTVDQLIKELPELLQRNREILEESLRLLDEEEATD----NDLRAKFKDRWQRTPSND 483
Query: 126 KDDGNRKEGS 135
R EG+
Sbjct: 484 LYKPLRAEGA 493
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,213,297
Number of Sequences: 539616
Number of extensions: 1739610
Number of successful extensions: 6376
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 6331
Number of HSP's gapped (non-prelim): 125
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)