Query 032045
Match_columns 148
No_of_seqs 110 out of 476
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:11:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_A Prefoldin; archaeal pro 99.9 1.6E-24 5.5E-29 154.6 14.7 106 13-118 1-106 (107)
2 2zqm_A Prefoldin beta subunit 99.9 6.8E-24 2.3E-28 153.3 14.8 111 10-120 3-113 (117)
3 2zdi_C Prefoldin subunit alpha 99.4 3E-12 1E-16 96.6 12.7 110 10-119 6-140 (151)
4 1fxk_C Protein (prefoldin); ar 99.3 5.6E-11 1.9E-15 87.5 13.6 103 14-116 2-127 (133)
5 3aei_A Prefoldin beta subunit 98.1 0.00011 3.8E-09 50.8 12.7 88 24-111 8-95 (99)
6 1l8d_A DNA double-strand break 96.7 0.056 1.9E-06 37.7 12.4 99 14-115 4-102 (112)
7 2zqm_A Prefoldin beta subunit 93.6 0.42 1.5E-05 33.1 8.0 97 15-111 15-111 (117)
8 1fxk_A Prefoldin; archaeal pro 92.0 0.93 3.2E-05 30.9 7.9 92 15-109 10-104 (107)
9 2pnv_A Small conductance calci 90.1 0.48 1.6E-05 28.6 4.2 36 74-109 6-41 (43)
10 3na7_A HP0958; flagellar bioge 84.2 13 0.00044 29.3 10.7 34 21-54 91-124 (256)
11 1fxk_C Protein (prefoldin); ar 82.5 1.1 3.7E-05 32.0 3.4 94 22-115 3-119 (133)
12 3efg_A Protein SLYX homolog; x 80.6 4.9 0.00017 26.7 5.9 49 72-120 9-57 (78)
13 2dq0_A Seryl-tRNA synthetase; 80.4 24 0.00082 30.3 11.7 77 18-113 29-105 (455)
14 3ol1_A Vimentin; structural ge 80.2 8.8 0.0003 27.2 7.5 89 19-115 19-107 (119)
15 2yny_A General control protein 80.1 13 0.00046 26.3 12.1 51 60-112 54-104 (106)
16 2dfs_A Myosin-5A; myosin-V, in 80.0 21 0.00072 34.1 12.1 41 72-112 1011-1051(1080)
17 3qne_A Seryl-tRNA synthetase, 77.5 27 0.00094 30.5 11.3 76 18-112 31-106 (485)
18 3oja_B Anopheles plasmodium-re 77.4 33 0.0011 29.3 12.5 39 79-117 539-577 (597)
19 3nmd_A CGMP dependent protein 75.6 9.6 0.00033 25.2 6.1 41 75-115 21-64 (72)
20 1ic2_A Tropomyosin alpha chain 75.3 15 0.0005 24.2 11.1 73 17-111 3-75 (81)
21 3ghg_A Fibrinogen alpha chain; 75.0 16 0.00055 32.6 9.0 46 74-119 107-159 (562)
22 3swk_A Vimentin; cytoskeleton, 74.1 6.1 0.00021 26.6 5.0 83 22-112 2-84 (86)
23 3oja_B Anopheles plasmodium-re 73.5 35 0.0012 29.1 10.8 38 16-53 452-489 (597)
24 3swy_A Cyclic nucleotide-gated 73.4 8.5 0.00029 23.3 5.0 38 81-118 2-39 (46)
25 1m1j_B Fibrinogen beta chain; 73.3 46 0.0016 29.0 11.9 32 82-113 166-197 (464)
26 2yy0_A C-MYC-binding protein; 72.7 5.4 0.00018 24.7 4.0 36 9-44 15-50 (53)
27 3uul_A Utrophin; spectrin repe 72.2 18 0.00062 23.8 8.9 81 8-110 31-111 (118)
28 3uun_A Dystrophin; triple heli 71.5 19 0.00064 23.7 9.2 82 9-112 32-113 (119)
29 1m1j_C Fibrinogen gamma chain; 67.7 43 0.0015 28.6 10.0 42 15-56 25-67 (409)
30 2dq3_A Seryl-tRNA synthetase; 66.8 27 0.00094 29.6 8.6 78 18-114 28-105 (425)
31 3a2a_A Voltage-gated hydrogen 66.7 19 0.00064 22.7 5.6 46 67-112 1-46 (58)
32 3lss_A Seryl-tRNA synthetase; 62.8 57 0.0019 28.4 10.0 26 86-111 113-138 (484)
33 1rtm_1 Mannose-binding protein 62.7 25 0.00084 24.4 6.5 23 59-84 36-58 (149)
34 3mq9_A Bone marrow stromal ant 62.4 67 0.0023 26.7 11.8 69 25-111 402-470 (471)
35 2l5g_B Putative uncharacterize 62.3 22 0.00076 21.1 5.6 34 16-49 5-38 (42)
36 3swf_A CGMP-gated cation chann 61.5 16 0.00054 24.3 4.8 36 82-117 5-40 (74)
37 2zdi_C Prefoldin subunit alpha 61.0 5.4 0.00018 29.0 2.7 35 79-113 107-141 (151)
38 2wt7_B Transcription factor MA 60.4 30 0.001 23.7 6.2 39 77-115 48-86 (90)
39 2v71_A Nuclear distribution pr 60.2 56 0.0019 25.1 10.3 35 81-115 46-80 (189)
40 3gp4_A Transcriptional regulat 59.6 27 0.00093 25.0 6.3 62 37-113 56-117 (142)
41 3mq7_A Bone marrow stromal ant 59.3 47 0.0016 23.9 12.1 85 18-120 23-110 (121)
42 1wle_A Seryl-tRNA synthetase; 58.4 80 0.0028 27.5 10.2 81 20-111 70-150 (501)
43 1s94_A S-syntaxin; three helix 57.1 54 0.0019 24.0 9.8 71 13-98 36-106 (180)
44 1i84_S Smooth muscle myosin he 57.1 1.1E+02 0.0036 29.2 11.5 14 22-35 866-879 (1184)
45 3gpv_A Transcriptional regulat 56.4 21 0.00071 25.8 5.2 61 37-112 70-130 (148)
46 1aq5_A Matrilin-1, CMP, cartil 55.5 10 0.00035 23.1 2.8 30 71-100 17-46 (47)
47 2yko_A LINE-1 ORF1P; RNA-bindi 54.7 32 0.0011 27.4 6.4 49 75-123 11-62 (233)
48 2ykt_A Brain-specific angiogen 54.7 78 0.0027 25.0 9.2 90 12-114 28-126 (253)
49 2pnv_A Small conductance calci 54.3 17 0.00059 21.6 3.6 22 80-101 19-40 (43)
50 1go4_E MAD1 (mitotic arrest de 52.9 6.2 0.00021 27.7 1.7 72 21-98 13-89 (100)
51 2l5g_B Putative uncharacterize 52.8 31 0.001 20.5 4.5 33 81-113 6-38 (42)
52 1q08_A Zn(II)-responsive regul 52.1 31 0.0011 22.5 5.2 65 33-111 9-73 (99)
53 3tnu_A Keratin, type I cytoske 51.8 60 0.0021 22.9 8.5 32 17-48 42-73 (131)
54 1t2k_D Cyclic-AMP-dependent tr 51.1 41 0.0014 20.7 6.5 39 75-113 20-58 (61)
55 1s35_A Beta-I spectrin, spectr 50.6 69 0.0023 23.2 8.3 33 9-41 29-61 (214)
56 1i6z_A BAG-family molecular ch 50.0 43 0.0015 24.6 6.0 104 10-113 11-129 (135)
57 2dfs_A Myosin-5A; myosin-V, in 48.7 1.8E+02 0.0061 27.7 11.5 24 76-99 1022-1045(1080)
58 3vkg_A Dynein heavy chain, cyt 48.5 2E+02 0.0067 31.1 12.5 46 73-118 2010-2055(3245)
59 2wuj_A Septum site-determining 47.5 24 0.00082 21.8 3.7 36 71-106 21-56 (57)
60 3tnu_B Keratin, type II cytosk 47.5 71 0.0024 22.4 11.0 31 17-47 40-70 (129)
61 1x8y_A Lamin A/C; structural p 47.1 49 0.0017 21.9 5.5 43 72-114 16-58 (86)
62 3ghg_A Fibrinogen alpha chain; 47.0 93 0.0032 27.8 8.6 20 72-91 116-135 (562)
63 4e8u_A Putative uncharacterize 46.4 48 0.0016 25.2 6.0 40 73-115 133-172 (172)
64 1deq_A Fibrinogen (alpha chain 45.1 97 0.0033 26.5 8.2 44 74-117 110-160 (390)
65 1gk4_A Vimentin; intermediate 45.1 56 0.0019 21.5 5.5 29 81-109 23-51 (84)
66 3ghg_C Fibrinogen gamma chain; 45.1 1.5E+02 0.005 25.4 9.7 97 19-115 30-129 (411)
67 3l4q_C Phosphatidylinositol 3- 45.0 98 0.0033 23.4 9.4 100 15-114 19-133 (170)
68 1ez3_A Syntaxin-1A; three heli 44.8 71 0.0024 21.7 9.2 72 13-99 5-76 (127)
69 3nmd_A CGMP dependent protein 44.2 65 0.0022 21.1 6.8 37 20-56 33-69 (72)
70 1ses_A Seryl-tRNA synthetase; 42.8 1.5E+02 0.0052 24.9 10.1 72 19-111 27-98 (421)
71 3trt_A Vimentin; cytoskeleton, 42.7 54 0.0018 20.8 5.1 12 23-34 12-23 (77)
72 3kqg_A Langerin, C-type lectin 42.6 45 0.0015 23.7 5.2 58 21-84 17-79 (182)
73 2fxo_A Myosin heavy chain, car 42.1 88 0.003 22.0 11.4 42 72-113 78-119 (129)
74 1i84_S Smooth muscle myosin he 41.6 95 0.0033 29.6 8.5 29 18-46 869-897 (1184)
75 3kin_B Kinesin heavy chain; mo 41.4 54 0.0018 22.9 5.3 35 12-46 81-115 (117)
76 1buu_A Protein (mannose-bindin 40.1 97 0.0033 21.9 8.0 58 17-84 20-77 (168)
77 1l8d_A DNA double-strand break 40.1 76 0.0026 21.3 5.8 37 79-115 5-41 (112)
78 2pih_A Protein YMCA; regulate 39.9 59 0.002 23.6 5.5 44 12-55 39-84 (151)
79 3na7_A HP0958; flagellar bioge 39.9 1.3E+02 0.0044 23.3 12.2 45 10-54 87-131 (256)
80 2yy0_A C-MYC-binding protein; 39.9 63 0.0022 19.7 4.9 28 87-114 22-49 (53)
81 2wt7_A Proto-oncogene protein 39.8 66 0.0023 19.9 6.5 38 76-113 22-59 (63)
82 1go4_E MAD1 (mitotic arrest de 39.3 94 0.0032 21.5 9.3 27 28-54 13-39 (100)
83 3viq_B Mating-type switching p 39.1 49 0.0017 22.4 4.5 28 87-114 4-31 (85)
84 1t3j_A Mitofusin 1; coiled coi 39.0 50 0.0017 22.8 4.6 28 72-99 42-69 (96)
85 3mov_A Lamin-B1; LMNB1, B-type 38.7 76 0.0026 21.5 5.5 44 71-114 24-67 (95)
86 4dci_A Uncharacterized protein 38.5 60 0.002 24.1 5.3 41 68-108 20-60 (150)
87 3qh9_A Liprin-beta-2; coiled-c 37.8 91 0.0031 20.9 9.6 25 91-115 54-78 (81)
88 3rrk_A V-type ATPase 116 kDa s 37.5 1.6E+02 0.0053 23.5 9.2 41 14-54 93-136 (357)
89 2efr_A General control protein 37.1 78 0.0027 23.5 5.8 40 76-115 83-122 (155)
90 3q8t_A Beclin-1; autophagy, AT 36.9 88 0.003 21.2 5.6 35 81-115 29-63 (96)
91 2ke4_A CDC42-interacting prote 36.4 1E+02 0.0035 21.1 6.5 29 76-104 61-89 (98)
92 3mtu_E Head morphogenesis prot 36.4 92 0.0032 20.7 5.4 48 66-113 19-66 (77)
93 3o0z_A RHO-associated protein 35.9 1.4E+02 0.0048 22.5 11.3 41 75-115 88-128 (168)
94 1gmj_A ATPase inhibitor; coile 35.5 57 0.002 22.0 4.4 29 27-55 51-79 (84)
95 2zvf_A Alanyl-tRNA synthetase; 35.3 20 0.0007 25.9 2.3 29 82-110 30-58 (171)
96 1m1j_C Fibrinogen gamma chain; 35.1 2.1E+02 0.0072 24.3 10.1 21 92-112 106-126 (409)
97 3kin_B Kinesin heavy chain; mo 35.0 65 0.0022 22.5 4.8 31 81-111 86-116 (117)
98 1jnm_A Proto-oncogene C-JUN; B 35.0 61 0.0021 19.9 4.3 35 77-111 22-56 (62)
99 1pwb_A SP-D, PSP-D, pulmonary 34.4 1.2E+02 0.0041 21.5 6.4 23 59-84 63-85 (177)
100 3mq7_A Bone marrow stromal ant 34.0 1.2E+02 0.0041 21.8 6.1 44 72-115 52-95 (121)
101 2w6a_A ARF GTPase-activating p 33.3 94 0.0032 19.8 6.3 48 67-114 8-57 (63)
102 2yny_A General control protein 33.2 42 0.0014 23.7 3.5 44 60-105 61-104 (106)
103 3hh0_A Transcriptional regulat 33.0 93 0.0032 22.2 5.6 40 74-113 77-116 (146)
104 3t97_C Nuclear pore glycoprote 32.9 95 0.0032 19.7 5.7 43 13-55 12-54 (64)
105 1lrz_A FEMA, factor essential 32.6 1.3E+02 0.0046 24.7 7.2 29 69-97 239-267 (426)
106 3rrk_A V-type ATPase 116 kDa s 32.5 1.9E+02 0.0065 23.0 10.0 67 35-106 61-128 (357)
107 1gmj_A ATPase inhibitor; coile 32.2 1.2E+02 0.004 20.5 6.4 26 86-111 53-78 (84)
108 2w6b_A RHO guanine nucleotide 32.1 94 0.0032 19.4 5.8 46 68-113 1-49 (56)
109 2z5i_A TM, general control pro 31.7 88 0.003 18.9 5.4 33 83-115 4-36 (52)
110 1ci6_A Transcription factor AT 31.6 95 0.0032 19.3 6.3 39 14-52 24-62 (63)
111 1r8e_A Multidrug-efflux transp 31.6 1.3E+02 0.0044 22.8 6.5 39 76-114 78-116 (278)
112 3swk_A Vimentin; cytoskeleton, 31.4 1.1E+02 0.0039 20.1 5.4 37 80-116 3-39 (86)
113 2l5g_A GPS2 protein, G protein 30.3 82 0.0028 18.2 4.3 32 11-42 6-37 (38)
114 2sak_A Staphylokinase; plasmin 30.2 18 0.00063 26.1 1.2 14 60-73 107-120 (121)
115 3efg_A Protein SLYX homolog; x 30.0 1.2E+02 0.004 19.8 5.6 41 76-116 20-60 (78)
116 4h22_A Leucine-rich repeat fli 29.7 1.4E+02 0.0049 20.8 5.9 39 77-115 44-82 (103)
117 2yko_A LINE-1 ORF1P; RNA-bindi 29.7 1.1E+02 0.0039 24.2 5.9 36 80-115 9-44 (233)
118 1u4q_A Spectrin alpha chain, b 29.6 1.9E+02 0.0064 22.1 7.2 34 9-42 244-277 (322)
119 1aa0_A Fibritin, gpwac E; bact 29.4 1.3E+02 0.0045 21.2 5.5 51 67-117 40-90 (113)
120 3u1c_A Tropomyosin alpha-1 cha 29.0 1.4E+02 0.0046 20.2 5.9 75 15-111 4-78 (101)
121 3ol1_A Vimentin; structural ge 28.9 1.5E+02 0.005 20.6 5.9 41 76-116 19-59 (119)
122 1cun_A Protein (alpha spectrin 28.8 1.6E+02 0.0054 21.0 7.9 33 9-41 29-61 (213)
123 3lbx_A Spectrin alpha chain, e 28.4 1.6E+02 0.0055 20.9 10.1 74 10-108 85-158 (161)
124 2lw1_A ABC transporter ATP-bin 28.2 93 0.0032 20.4 4.5 17 82-98 27-43 (89)
125 2qlz_A Transcription factor PF 28.2 1.8E+02 0.0063 22.4 6.9 82 11-96 114-202 (232)
126 3u1c_A Tropomyosin alpha-1 cha 27.7 1.4E+02 0.0049 20.1 12.8 28 18-45 21-48 (101)
127 3m9b_A Proteasome-associated A 27.3 85 0.0029 25.2 4.8 32 80-111 64-95 (251)
128 3lbx_B Beta-I spectrin, spectr 27.2 1.6E+02 0.0056 21.0 6.2 33 9-41 33-65 (185)
129 1nkp_B MAX protein, MYC proto- 27.0 1.3E+02 0.0044 19.3 6.2 62 46-115 17-78 (83)
130 1gd2_E Transcription factor PA 26.9 1.3E+02 0.0044 19.3 5.0 35 79-113 31-65 (70)
131 3hnw_A Uncharacterized protein 26.9 1.8E+02 0.006 20.9 11.1 30 84-113 103-132 (138)
132 2dgc_A Protein (GCN4); basic d 26.8 1.2E+02 0.0041 18.9 4.7 30 85-114 31-60 (63)
133 1lwu_C Fibrinogen gamma chain; 26.3 1.6E+02 0.0056 24.2 6.5 34 82-115 24-57 (323)
134 3cvf_A Homer-3, homer protein 26.2 1.4E+02 0.0049 19.7 5.1 26 79-104 15-40 (79)
135 4ani_A Protein GRPE; chaperone 26.1 1.5E+02 0.005 23.1 5.9 39 77-115 59-97 (213)
136 3cve_A Homer protein homolog 1 26.1 1.4E+02 0.0048 19.4 5.1 26 79-104 9-34 (72)
137 4etp_A Kinesin-like protein KA 26.1 1E+02 0.0035 25.8 5.4 24 81-104 14-37 (403)
138 2oeq_A Protein of unknown func 26.1 1.3E+02 0.0044 20.7 5.1 22 12-33 38-59 (122)
139 4fla_A Regulation of nuclear P 26.0 1.9E+02 0.0066 21.1 9.5 27 8-34 17-43 (152)
140 1q06_A Transcriptional regulat 26.0 1.5E+02 0.0052 20.6 5.6 57 37-108 54-110 (135)
141 3gpv_A Transcriptional regulat 25.3 1.5E+02 0.0051 21.0 5.5 41 23-63 98-138 (148)
142 4e61_A Protein BIM1; EB1-like 25.0 1.2E+02 0.0039 21.3 4.6 30 24-53 8-37 (106)
143 2zvf_A Alanyl-tRNA synthetase; 24.8 98 0.0034 22.1 4.5 30 74-103 29-58 (171)
144 1r8d_A Transcription activator 24.6 1.3E+02 0.0043 20.0 4.7 30 78-107 76-105 (109)
145 3a7o_A Autophagy protein 16; c 24.5 1.1E+02 0.0039 20.0 4.2 33 76-108 17-49 (75)
146 3twe_A Alpha4H; unknown functi 24.2 87 0.003 16.4 3.5 18 97-114 7-24 (27)
147 3pbf_A Pulmonary surfactant-as 24.1 1E+02 0.0035 20.9 4.3 47 34-84 9-57 (148)
148 1am9_A Srebp-1A, protein (ster 23.6 1.5E+02 0.0053 19.1 5.2 36 14-49 44-79 (82)
149 3qao_A LMO0526 protein, MERR-l 23.6 63 0.0022 25.2 3.4 40 77-116 76-115 (249)
150 3t98_A Nuclear pore complex pr 23.4 1.3E+02 0.0045 18.3 4.3 36 69-104 14-49 (51)
151 1zme_C Proline utilization tra 23.4 63 0.0022 19.5 2.8 21 79-99 46-66 (70)
152 1urq_A M-tomosyn isoform; tran 23.4 1.4E+02 0.0049 18.6 5.4 37 71-108 9-45 (63)
153 3u59_A Tropomyosin beta chain; 23.3 1.7E+02 0.0059 19.5 12.9 74 15-110 4-77 (101)
154 1hjb_A Ccaat/enhancer binding 23.1 1.7E+02 0.006 19.5 5.6 36 80-115 39-74 (87)
155 1s1c_X RHO-associated, coiled- 22.9 1.6E+02 0.0056 19.1 5.5 28 82-109 4-31 (71)
156 3etw_A Adhesin A; antiparallel 22.5 2.1E+02 0.0073 20.3 9.4 15 18-32 7-21 (119)
157 1cun_A Protein (alpha spectrin 22.3 2.2E+02 0.0074 20.3 7.9 35 9-43 135-169 (213)
158 2wg5_A General control protein 22.0 94 0.0032 21.3 3.7 27 86-112 9-35 (109)
159 1k1f_A Breakpoint cluster regi 21.7 1.2E+02 0.0039 19.8 3.7 24 86-109 28-51 (72)
160 2ocy_A RAB guanine nucleotide 21.7 2.5E+02 0.0085 20.8 8.4 82 19-111 57-142 (154)
161 2xdj_A Uncharacterized protein 21.2 1.9E+02 0.0063 19.1 6.0 35 79-113 22-56 (83)
162 2xv5_A Lamin-A/C; structural p 21.0 1.8E+02 0.0061 18.8 5.1 24 85-108 6-29 (74)
163 3m9b_A Proteasome-associated A 20.4 1.2E+02 0.004 24.4 4.4 40 76-115 53-92 (251)
164 3viq_B Mating-type switching p 20.1 1.1E+02 0.0037 20.6 3.5 26 80-105 4-29 (85)
No 1
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=99.92 E-value=1.6e-24 Score=154.57 Aligned_cols=106 Identities=12% Similarity=0.208 Sum_probs=102.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHH
Q 032045 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEV 92 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~ 92 (148)
|.+|+++.+|++++++++.+.+++..++.+++||+.|+++|+.+++|++|||+||||||++++++|+++|++++++|+..
T Consensus 1 ~~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~ 80 (107)
T 1fxk_A 1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLR 80 (107)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q 032045 93 IARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 93 i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
|++|++++..+++++.+|+.++.-.+
T Consensus 81 i~~le~~~~~~~~~l~~lk~~l~~~~ 106 (107)
T 1fxk_A 81 EKTIERQEERVMKKLQEMQVNIQEAM 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999886544
No 2
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=99.92 E-value=6.8e-24 Score=153.26 Aligned_cols=111 Identities=15% Similarity=0.296 Sum_probs=107.5
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHH
Q 032045 10 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGI 89 (148)
Q Consensus 10 ~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L 89 (148)
.-|+..|+++.+|+.++++++.+.+++..++.+++||+.|+++|+.+++|++||++||||||++++++|++.|++++++|
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~i 82 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETL 82 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 032045 90 EEVIARLNEALAAKKKEISDFEAKYKIRIRK 120 (148)
Q Consensus 90 ~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~ 120 (148)
+..|++|++++..+.+++.+|+.++.-.+.+
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999977754
No 3
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=99.42 E-value=3e-12 Score=96.65 Aligned_cols=110 Identities=19% Similarity=0.279 Sum_probs=102.6
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCCC-CCCceeeeec------------------
Q 032045 10 REPVNEQIVANMYTSMRSELNQIYSKITEL---EMEASEHSLVINAIKPLD-PSRKCYRMIG------------------ 67 (148)
Q Consensus 10 ~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~L---e~ql~E~~~VleeL~~l~-~dr~~yrlVG------------------ 67 (148)
..|+.++++...+++|+.+++.+.++++.| ...+.|+..++++|+.++ ++..+|..+|
T Consensus 6 ~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~ 85 (151)
T 2zdi_C 6 QNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVS 85 (151)
T ss_dssp SSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEE
Confidence 678999999999999999999999999999 999999999999999999 8888887744
Q ss_pred ---ceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 032045 68 ---GVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIR 119 (148)
Q Consensus 68 ---~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~ 119 (148)
||+|+.|.+||+..|++|+++|+..++.+++++..+...+..+...++-...
T Consensus 86 lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 86 VGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred eCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999888775544
No 4
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=99.31 E-value=5.6e-11 Score=87.50 Aligned_cols=103 Identities=12% Similarity=0.266 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CC--------------------Cceeeeec-cee
Q 032045 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLD--PS--------------------RKCYRMIG-GVL 70 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~--~d--------------------r~~yrlVG-~VL 70 (148)
.++++...+++|+.+++.+.+++..|...+.|+...+++|+.++ .+ .+||-.|| |++
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~ 81 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA 81 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEE
Confidence 46889999999999999999999999999999999999999887 33 23666788 899
Q ss_pred eeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032045 71 VERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 71 Ve~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
|+.|.+||+..|++|++.++..++.+++++..+...+..+...++-
T Consensus 82 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887653
No 5
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=98.12 E-value=0.00011 Score=50.77 Aligned_cols=88 Identities=25% Similarity=0.352 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 032045 24 SMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAK 103 (148)
Q Consensus 24 ~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~ 103 (148)
.|+-++++|..-++-++.-..|.+-+---+..+..+|++||-....||+-|++|++..++.-.=-....|++|.+..+.+
T Consensus 8 el~lel~qir~lr~~~elkmkeleyaegiit~~k~er~~yraf~dllveitkdeaiehier~rl~ykreie~l~~~ekei 87 (99)
T 3aei_A 8 ELQLELQQIRTLRQSLELKMKELEYAEGIITSLKSERRIYRAFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEI 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCSCCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777788888888888888888999999999999999999999999999999887777788899999988888
Q ss_pred HHHHHHHH
Q 032045 104 KKEISDFE 111 (148)
Q Consensus 104 ~kel~~~~ 111 (148)
.+++..+.
T Consensus 88 me~ls~l~ 95 (99)
T 3aei_A 88 MEELSKLR 95 (99)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhhc
Confidence 88877664
No 6
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=96.72 E-value=0.056 Score=37.73 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=77.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHH
Q 032045 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVI 93 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i 93 (148)
.+..+-.++..++.++..|...+..+.+++.+...++..|+.. +..|- +-|..+=.....+++.....++..+...+
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~--g~~CP-vCgs~l~~~~~~~~i~~~~~~l~~l~~~i 80 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA--KGKCP-VCGRELTDEHREELLSKYHLDLNNSKNTL 80 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--SEECT-TTCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCC-CCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667888999999999999999999999999999999873 22333 11222223344577888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 032045 94 ARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 94 ~~l~~ql~~~~kel~~~~~k~~ 115 (148)
..+..++..+..++..+...+.
T Consensus 81 ~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 81 AKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888877
No 7
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=93.59 E-value=0.42 Score=33.10 Aligned_cols=97 Identities=10% Similarity=0.032 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032045 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIA 94 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~ 94 (148)
.+.+..+++.+..+++.+..++..++.-+.|...+-+.=+-.-+=-.||=..---=+..++++-+..++..++.|+..++
T Consensus 15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~ 94 (117)
T 2zqm_A 15 LESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEK 94 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777788888888888887777777766542111111234553333334456677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032045 95 RLNEALAAKKKEISDFE 111 (148)
Q Consensus 95 ~l~~ql~~~~kel~~~~ 111 (148)
.+.+.+.+++..+.+..
T Consensus 95 ~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 95 KLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777776543
No 8
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=92.00 E-value=0.93 Score=30.88 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHH
Q 032045 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA---IKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEE 91 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~ 91 (148)
.+.+..+++.+..+++.+..++..++.-+.|...+-+. ...+ -.||=..---=+..++++-+..++.+++.|+.
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~i---G~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~ 86 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSS---GNILIRVAKDELTEELQEKLETLQLREKTIER 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEE---TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH---hHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888888888888888888888888877542 2222 34553333333556778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032045 92 VIARLNEALAAKKKEISD 109 (148)
Q Consensus 92 ~i~~l~~ql~~~~kel~~ 109 (148)
.++.+.+.+.+++..+.+
T Consensus 87 ~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 87 QEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888877653
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=90.07 E-value=0.48 Score=28.59 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=31.4
Q ss_pred cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 74 TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISD 109 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~ 109 (148)
.+-|.+..|..|-+.++++|..|+..+..+...++.
T Consensus 6 ~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 6 IMYDMISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356889999999999999999999999999887764
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.25 E-value=13 Score=29.25 Aligned_cols=34 Identities=12% Similarity=0.006 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032045 21 MYTSMRSELNQIYSKITELEMEASEHSLVINAIK 54 (148)
Q Consensus 21 ~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 54 (148)
+|+.|+.++..+...+..++.++.|...-+++++
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~ 124 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKS 124 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666666555543
No 11
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=82.47 E-value=1.1 Score=31.97 Aligned_cols=94 Identities=11% Similarity=0.185 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----Cc--eee----eecceeeeecHhH-------------H
Q 032045 22 YTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPS----RK--CYR----MIGGVLVERTISE-------------V 78 (148)
Q Consensus 22 ~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d----r~--~yr----lVG~VLVe~tv~E-------------a 78 (148)
.++|+..++.+...+..|..++...+..+.++...-.. .. =+. +.+++.|+-.+.+ +
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~v 82 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI 82 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEE
Confidence 56666667777777777777777666666665554321 11 011 2222222232222 1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.-.+++=+++++.+++.++.+++.+.+.+..++..+.
T Consensus 83 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~ 119 (133)
T 1fxk_C 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345666677777777777777777777776666554
No 12
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=80.59 E-value=4.9 Score=26.74 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=41.6
Q ss_pred eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 032045 72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK 120 (148)
Q Consensus 72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~ 120 (148)
..+.++=+..|+.++.|.+..|+.|+..+...+++|..++..+..-..+
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677889999999999999999999999999999999888764433
No 13
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=80.41 E-value=24 Score=30.33 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032045 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
++.++-.|-.+...+..++..|..+.++...-+..++.-..+ ...|..+...|...|+.++
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~-------------------~~~l~~~~~~~~~~~~~~~ 89 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEP-------------------VDELLAKSREIVKRIGELE 89 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC-------------------THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-------------------HHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777776665442211 2456666777778888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 032045 98 EALAAKKKEISDFEAK 113 (148)
Q Consensus 98 ~ql~~~~kel~~~~~k 113 (148)
.++..+++++..+-..
T Consensus 90 ~~~~~~~~~~~~~~~~ 105 (455)
T 2dq0_A 90 NEVEELKKKIDYYLWR 105 (455)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888877766543
No 14
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.21 E-value=8.8 Score=27.18 Aligned_cols=89 Identities=11% Similarity=0.151 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHH
Q 032045 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNE 98 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ 98 (148)
-..+..|+.++..+......|+.++.-...+++.|+.-=.+-. -..++++.-+..|.+-++......-.|+.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~--------~~r~~~E~di~~lrK~lD~~~l~r~dLE~ 90 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM--------LQREEAENTLQSFRQDVDNASLARLDLER 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------HHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 3467888999999999999999999888888888764211111 11233444444455555555545555666
Q ss_pred HHHHHHHHHHHHHHHhc
Q 032045 99 ALAAKKKEISDFEAKYK 115 (148)
Q Consensus 99 ql~~~~kel~~~~~k~~ 115 (148)
+++.+.++|.=++..|.
T Consensus 91 ~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 91 KVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666665555443
No 15
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=80.13 E-value=13 Score=26.27 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=45.2
Q ss_pred CceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 60 RKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 60 r~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
+.-|.+-|. .-.+|.+|+..|..++..+...|..+..++..++-+|..+++
T Consensus 54 aPtY~I~g~--~YnnVGdAl~ald~svt~i~~~I~~lt~~i~~~~~~i~~~~~ 104 (106)
T 2yny_A 54 APLYEVGTG--IYNNVGSALSALNTSMKQIEDKIEEILSKIYHIENEIARIKK 104 (106)
T ss_dssp CCCEEETTE--EESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEeCCc--eeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777887765 357899999999999999999999999999999999988764
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.01 E-value=21 Score=34.05 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=26.7
Q ss_pred eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
+.........|++.+..|+++...|+.|+.+++..+.+..+
T Consensus 1011 ee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555677777777777777777777777755554443
No 17
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=77.46 E-value=27 Score=30.50 Aligned_cols=76 Identities=11% Similarity=0.015 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032045 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
.+.++-.|-.+...+..+...|..+.++...-+..++.-..| ...|..+...|...|+.++
T Consensus 31 ~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~-------------------~~~l~~~~~~l~~~i~~le 91 (485)
T 3qne_A 31 LVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKED-------------------AKDLIAEKEKLSNEKKEII 91 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-------------------HHHHHHHHHHHHHHHHHHH
Confidence 355666666667777777777777777766666555442211 1345666777778888888
Q ss_pred HHHHHHHHHHHHHHH
Q 032045 98 EALAAKKKEISDFEA 112 (148)
Q Consensus 98 ~ql~~~~kel~~~~~ 112 (148)
.++..++.++..+-.
T Consensus 92 ~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 92 EKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877776553
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.37 E-value=33 Score=29.25 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=24.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032045 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
...+++.++.++..++..++++.++.++++.+..+++..
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666666666665543
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.64 E-value=9.6 Score=25.23 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=30.6
Q ss_pred HhHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 75 ISEVLPAVQRNKEGIE---EVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~---~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+.+....|.++.+.|. ..|+.+++.+..+..++..|+..+.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665554 6888899999999999998887663
No 20
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=75.34 E-value=15 Score=24.15 Aligned_cols=73 Identities=11% Similarity=0.225 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHH
Q 032045 17 IVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARL 96 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l 96 (148)
.|-.+++.|+.+......+...++..+.+.+.-... .++-+..|..++..|+..+++.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~----------------------~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQ----------------------LEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999888865422 3444566777777777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 032045 97 NEALAAKKKEISDFE 111 (148)
Q Consensus 97 ~~ql~~~~kel~~~~ 111 (148)
+..+.....+++.-.
T Consensus 61 ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 61 SESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777776666543
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.97 E-value=16 Score=32.64 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=29.8
Q ss_pred cHhHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhccccc
Q 032045 74 TISEVLPAVQRNKEGIEE-------VIARLNEALAAKKKEISDFEAKYKIRIR 119 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~-------~i~~l~~ql~~~~kel~~~~~k~~i~i~ 119 (148)
++.++-..|+.++.+|+. .|..|+..|.++..+|.+|.-.+.|+|.
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666664 4556666677777777777777777664
No 22
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=74.07 E-value=6.1 Score=26.61 Aligned_cols=83 Identities=12% Similarity=0.186 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 032045 22 YTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALA 101 (148)
Q Consensus 22 ~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~ 101 (148)
++.|+.++..+......|+.++.-....++.|+.-=.+ -+-..++++.-+..|.+-++...-..-.|+.+++
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~--------E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kve 73 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE--------EMLQREEAENTLQSFRQDVDNASLARLDLERKVE 73 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888887777777543111 2223345555566666666666666666777777
Q ss_pred HHHHHHHHHHH
Q 032045 102 AKKKEISDFEA 112 (148)
Q Consensus 102 ~~~kel~~~~~ 112 (148)
.+.++|.=+++
T Consensus 74 sL~eEl~fLkk 84 (86)
T 3swk_A 74 SLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 77777665543
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.47 E-value=35 Score=29.10 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032045 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAI 53 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL 53 (148)
+.+.+++.+++..++.+.....+.+..+.....-+++.
T Consensus 452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33445666677777777777777777777777776654
No 24
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=73.43 E-value=8.5 Score=23.32 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=27.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032045 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
.++++++.|+..++.|...+..+-.++...+.|++-||
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777777777766555
No 25
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=73.31 E-value=46 Score=28.98 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=18.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 82 VQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
+..++..|+..++.+...+..++..+..+...
T Consensus 166 ~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 166 IPSSLRVLRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555666666666666666555544
No 26
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.69 E-value=5.4 Score=24.70 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=26.9
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 9 RREPVNEQIVANMYTSMRSELNQIYSKITELEMEAS 44 (148)
Q Consensus 9 ~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~ 44 (148)
+..+.+.+.+..+...|+..+..|..+..++.+.+.
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677777888888888888888888888777665
No 27
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=72.23 E-value=18 Score=23.83 Aligned_cols=81 Identities=9% Similarity=-0.012 Sum_probs=48.6
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHH
Q 032045 8 ERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKE 87 (148)
Q Consensus 8 ~~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e 87 (148)
-+.++..++.++.+++.|+.++......+..+...-... ++. -. .-.+-.+.|..+++
T Consensus 31 ~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L---~~~---~~----------------~~~~~~~~i~~~l~ 88 (118)
T 3uul_A 31 ISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQL---MTQ---GT----------------LSDEEEFEIQEQMT 88 (118)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHT---TC----------------SCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh---CC----------------CChhHHHHHHHHHH
Confidence 345677788888888888888777766666654433221 110 00 01233456777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032045 88 GIEEVIARLNEALAAKKKEISDF 110 (148)
Q Consensus 88 ~L~~~i~~l~~ql~~~~kel~~~ 110 (148)
.|..+-+.|..........|+.-
T Consensus 89 ~l~~rw~~L~~~~~~R~~~L~~a 111 (118)
T 3uul_A 89 LLNARWEALRVESMERQSRLHDA 111 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766666666665543
No 28
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=71.48 E-value=19 Score=23.67 Aligned_cols=82 Identities=10% Similarity=0.003 Sum_probs=49.8
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHH
Q 032045 9 RREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEG 88 (148)
Q Consensus 9 ~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~ 88 (148)
+.++..++.++.+++.|+.++......+..+...-... +.. . ..-.+..+.|..+++.
T Consensus 32 ~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L---~~~-~------------------~~~~~~~~~i~~~l~~ 89 (119)
T 3uun_A 32 SNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKL---IGT-G------------------KLSEDEETEVQEQMNL 89 (119)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-T------------------CSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHc-C------------------CCCHHHHHHHHHHHHH
Confidence 45667777778888877777776666665555443322 111 0 0123445667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 89 IEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 89 L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
|..+-+.|..........|+..-.
T Consensus 90 l~~rw~~L~~~~~~R~~~Le~aL~ 113 (119)
T 3uun_A 90 LNSRWECLRVASMEKQSNLHRVLM 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766666655443
No 29
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=67.68 E-value=43 Score=28.60 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=27.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032045 15 EQIVANMYTS-MRSELNQIYSKITELEMEASEHSLVINAIKPL 56 (148)
Q Consensus 15 ~qe~~~~~q~-Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 56 (148)
++..+.+|+. +..+++.|-.-+.+|+.-.++....+..|...
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777 77777776666666666666666655555544
No 30
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=66.78 E-value=27 Score=29.58 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032045 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
++.++-.|-.+...+..+...|.++.++...-+..++.-..+ . ..|..+...|...++.++
T Consensus 28 ~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~---------------~----~~l~~~~~~~~~~~~~~~ 88 (425)
T 2dq3_A 28 LVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKD---------------T----TEIQNRVKELKEEIDRLE 88 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSC---------------T----TTSTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc---------------H----HHHHHHHHHHHHHHHHHH
Confidence 467777788888888888888888887777666555432211 1 234455666777788888
Q ss_pred HHHHHHHHHHHHHHHHh
Q 032045 98 EALAAKKKEISDFEAKY 114 (148)
Q Consensus 98 ~ql~~~~kel~~~~~k~ 114 (148)
.++..+++++..+-..+
T Consensus 89 ~~~~~~~~~~~~~~~~i 105 (425)
T 2dq3_A 89 EELRKVEEELKNTLLWI 105 (425)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 88888888887766543
No 31
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=66.66 E-value=19 Score=22.73 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=29.9
Q ss_pred cceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 67 GGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 67 G~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
|||.|+.--+.-+.-|..-...|-..+..|+.+...++.++..+.+
T Consensus 1 ~~vSVktRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 1 GPLGSKTRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888887777777888888888888899999999999988887654
No 32
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=62.84 E-value=57 Score=28.45 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 86 KEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 86 ~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
...|...|+.++.++..++.++..+-
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666544
No 33
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=62.72 E-value=25 Score=24.44 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=15.5
Q ss_pred CCceeeeecceeeeecHhHHHHHHHH
Q 032045 59 SRKCYRMIGGVLVERTISEVLPAVQR 84 (148)
Q Consensus 59 dr~~yrlVG~VLVe~tv~Ea~~~Le~ 84 (148)
...||+++. ...|-.+|...=..
T Consensus 36 ~~~Cy~~~~---~~~tw~~A~~~C~~ 58 (149)
T 1rtm_1 36 GKKFFVTNH---ERMPFSKVKALCSE 58 (149)
T ss_dssp TSCEEEEEE---EEEEHHHHHHHHHH
T ss_pred CCEEEEEeC---CCCCHHHHHHHHHh
Confidence 589999864 45677777665544
No 34
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=62.43 E-value=67 Score=26.68 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 032045 25 MRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKK 104 (148)
Q Consensus 25 Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~ 104 (148)
||+++..+.....+++.+.+-|+.-.-+|-. +.+--+..-.+|++.++.+|..++.++++..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMA------------------SLDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666666555543333321 1111111123577777778888888887777
Q ss_pred HHHHHHH
Q 032045 105 KEISDFE 111 (148)
Q Consensus 105 kel~~~~ 111 (148)
.++.+++
T Consensus 464 ~~~~~~~ 470 (471)
T 3mq9_A 464 AEVERLR 470 (471)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777654
No 35
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=62.29 E-value=22 Score=21.13 Aligned_cols=34 Identities=9% Similarity=0.141 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLV 49 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~V 49 (148)
.+++.++..+..++...-.+|..|...+.+.+.+
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999988887755
No 36
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=61.46 E-value=16 Score=24.30 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=16.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032045 82 VQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
++++++.|+..++.|+..+..+-.++...+.|++-|
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqR 40 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQR 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 37
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=61.03 E-value=5.4 Score=29.02 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=19.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
+..|+.+++.++..+..+..++..+...+++++..
T Consensus 107 i~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 107 LKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555543
No 38
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=60.44 E-value=30 Score=23.69 Aligned_cols=39 Identities=10% Similarity=0.234 Sum_probs=34.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+-+..|+..+..|...++.|......+..++..|+.+|.
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999998885
No 39
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=60.17 E-value=56 Score=25.12 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=17.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.|++.++..++.+..|......+..+++.|+.||.
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555554443
No 40
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=59.60 E-value=27 Score=25.00 Aligned_cols=62 Identities=10% Similarity=0.168 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 37 TELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 37 ~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
..+...+.|.+.+++....-+ .+..+....|..+++.|+..|..|+..+..+...+..++..
T Consensus 56 r~~G~sL~eIk~~l~~~~~~~---------------~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 56 RRAGLSIEALIDYLALFREGE---------------HTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp HHTTCCHHHHHHHHHHHHHCG---------------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHhccC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777776554311 36678888899999999999999999988888888887753
No 41
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=59.28 E-value=47 Score=23.91 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032045 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
-.+.-+=|+.++.....-+.+-+++..-++.-..+|.. +.+.-+.--.++++.|+.+|+.|+
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~------------------SL~~ekaq~q~~vqeLqgEI~~Ln 84 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA------------------SLDAEKAQGQKKVEELEGEITTLN 84 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777777777777778887777777666653 122222222567899999999999
Q ss_pred HHHHHHHHHHHHHHHHhc---ccccC
Q 032045 98 EALAAKKKEISDFEAKYK---IRIRK 120 (148)
Q Consensus 98 ~ql~~~~kel~~~~~k~~---i~i~~ 120 (148)
..|++...+++.++..+. .+|..
T Consensus 85 q~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 85 HKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 999999999999998876 44544
No 42
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=58.37 E-value=80 Score=27.51 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHH
Q 032045 20 NMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEA 99 (148)
Q Consensus 20 ~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~q 99 (148)
.++-.|-.+...+..++..|..+.++...-+..++.-.++.. ...++-...|..+...|...|+.++.+
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~l~~~i~~l~~~ 138 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQ-----------VQQDPQYQSLRARGREIRKQLTLLYPK 138 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT-----------GGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc-----------ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555554444332111000 011123345666677777777777777
Q ss_pred HHHHHHHHHHHH
Q 032045 100 LAAKKKEISDFE 111 (148)
Q Consensus 100 l~~~~kel~~~~ 111 (148)
+..+++++..+-
T Consensus 139 ~~~~~~~l~~~l 150 (501)
T 1wle_A 139 EAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 43
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=57.09 E-value=54 Score=23.97 Aligned_cols=71 Identities=10% Similarity=0.226 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHH
Q 032045 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEV 92 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~ 92 (148)
+.+..+..+.+.++..+..|...+..|... |..+|.+.. ++. -+++..+.....+......|...
T Consensus 36 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~---~~~~L~~~~---~~~---------~~k~~le~l~~~i~~~a~~ik~~ 100 (180)
T 1s94_A 36 GFMEEFFEQVEEIRAMIDKISDNVDAVKKK---HSDILSAPQ---TDD---------QMKEELEELMTDIKRTANKVRGK 100 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCC-------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCC---chH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777788888888887777777655 333333211 111 24566666666666666666665
Q ss_pred HHHHHH
Q 032045 93 IARLNE 98 (148)
Q Consensus 93 i~~l~~ 98 (148)
|+.|..
T Consensus 101 Lk~l~~ 106 (180)
T 1s94_A 101 LKTIEL 106 (180)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 44
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=57.06 E-value=1.1e+02 Score=29.25 Aligned_cols=14 Identities=0% Similarity=0.048 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 032045 22 YTSMRSELNQIYSK 35 (148)
Q Consensus 22 ~q~Lq~q~q~l~~q 35 (148)
+..++..+..+...
T Consensus 866 L~el~~~L~~le~~ 879 (1184)
T 1i84_S 866 LQRTKERQQKAEAE 879 (1184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 45
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=56.35 E-value=21 Score=25.76 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 37 TELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 37 ~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
..+...+.|.+.+++.... | ..+..++...|..+++.|+..|..|+..+..+...+..|+.
T Consensus 70 r~~G~sL~eIk~~l~~~~~-----------~----~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 70 KNTGMPIQKIKQFIDWSME-----------G----DSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HTTTCCHHHHHHHHHHHHH-----------C----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCCHHHHHHHHHhhhc-----------C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666664322 1 13567788888999999999999998888888888887765
No 46
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=55.47 E-value=10 Score=23.13 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=19.2
Q ss_pred eeecHhHHHHHHHHhHHHHHHHHHHHHHHH
Q 032045 71 VERTISEVLPAVQRNKEGIEEVIARLNEAL 100 (148)
Q Consensus 71 Ve~tv~Ea~~~Le~r~e~L~~~i~~l~~ql 100 (148)
+...+.+.+..|..+++.+..+++.|+.++
T Consensus 17 FQ~~v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 17 FQTKVEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566667777777776666666665543
No 47
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=54.72 E-value=32 Score=27.42 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=34.8
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcccccCCCC
Q 032045 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEA---KYKIRIRKPES 123 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~---k~~i~i~~~~~ 123 (148)
.+|-+..|++|++.|....+..++.+...+..+.++.. ..||+|.|-++
T Consensus 11 ~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~NIRIiGVPE 62 (233)
T 2yko_A 11 LEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPE 62 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEESCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEeecCC
Confidence 45667778888888887777777777666666665554 56788988544
No 48
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=54.71 E-value=78 Score=25.05 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=49.7
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCceeeeecceeeeecHhHHHHHHHHhHH
Q 032045 12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP----SRKCYRMIGGVLVERTISEVLPAVQRNKE 87 (148)
Q Consensus 12 ~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~----dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e 87 (148)
.|..++++..-..|+..+..+..-...+- ++|.++.+ .+.+ |-+|.+|.+ +.++-..++.+++
T Consensus 28 ~P~~e~li~~~~kY~~al~~~~~a~~~f~----------dal~kia~~A~~s~gs-~elG~~L~~--i~~~~r~ie~~l~ 94 (253)
T 2ykt_A 28 NPSLRNFIAMGKNYEKALAGVTYAAKGYF----------DALVKMGELASESQGS-KELGDVLFQ--MAEVHRQIQNQLE 94 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHTSSSC-HHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhccCcch-HHHHHHHHH--HHHHHHHHHHHHH
Confidence 46667777777777777776666554443 33322211 3455 889998865 5555555555555
Q ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 032045 88 GI-----EEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 88 ~L-----~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
.. ...|--|++.++.-.+.+..+.++|
T Consensus 95 ~~~~~~~~~li~pL~~kie~d~K~v~~~~K~~ 126 (253)
T 2ykt_A 95 EMLKSFHNELLTQLEQKVELDSRYLSAALKKY 126 (253)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 22 2234445555554444444444444
No 49
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=54.26 E-value=17 Score=21.61 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=12.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 032045 80 PAVQRNKEGIEEVIARLNEALA 101 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~ 101 (148)
..|++|+..|+..++.|...+.
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655543
No 50
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.87 E-value=6.2 Score=27.69 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CC-CCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHH
Q 032045 21 MYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL----DP-SRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIAR 95 (148)
Q Consensus 21 ~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l----~~-dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~ 95 (148)
+|..|+.++..|-.....|..++.+.+.=|+-.. + ++ +.+|+++.-. ...++.....+.++.|..++++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~-l~Gd~~~~~TKVlH~~~N-----Pa~~a~~~~~~~~e~Lq~E~er 86 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRA-LQGDYDQSRTKVLHMSLN-----PTSVARQRLREDHSQLQAECER 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCSCCCTTTEEEEEESSC-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccCCccCeeeeecCC-----hHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666665532 3 11 3455555433 2334444444444444444444
Q ss_pred HHH
Q 032045 96 LNE 98 (148)
Q Consensus 96 l~~ 98 (148)
|..
T Consensus 87 Lr~ 89 (100)
T 1go4_E 87 LRG 89 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 51
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.76 E-value=31 Score=20.50 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=22.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
.|=.+++.+..+|...++++..+++++.++.+.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556667777777777777777777766643
No 52
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=52.10 E-value=31 Score=22.48 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 33 YSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 33 ~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
+.....+...|.|.+..++....- +. .+..++...|..+++.|+..|..|+..+..+...+..+.
T Consensus 9 I~~lr~lGfsL~eIk~~l~~~~~~--~~------------~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 9 IRHARQLGFSLESIRELLSIRIDP--EH------------HTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHCG--GG------------CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCCHHHHHHHHHHHhCC--Cc------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677788888887654321 11 256778888899999999998888888877777666543
No 53
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.80 E-value=60 Score=22.90 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 17 IVANMYTSMRSELNQIYSKITELEMEASEHSL 48 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~ 48 (148)
++-..+|.|+-+++.+..++..|+..+.|.+.
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444555555555555555555555554443
No 54
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.05 E-value=41 Score=20.70 Aligned_cols=39 Identities=8% Similarity=0.237 Sum_probs=31.5
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
..+-...|+.+.+.|+..-..|...+..+..++..|+..
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888888888887653
No 55
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=50.65 E-value=69 Score=23.21 Aligned_cols=33 Identities=3% Similarity=0.064 Sum_probs=24.8
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 9 RREPVNEQIVANMYTSMRSELNQIYSKITELEM 41 (148)
Q Consensus 9 ~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ 41 (148)
+.+++.++.++.+++.++.++......+..+..
T Consensus 29 ~~dl~~v~~ll~~h~~~~~ei~~~~~~~~~~~~ 61 (214)
T 1s35_A 29 PESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKE 61 (214)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 567888899999999999888766655555543
No 56
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=49.97 E-value=43 Score=24.56 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=53.3
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcCCCCCCcee--------eeecceeeeec
Q 032045 10 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHS-------LVINAIKPLDPSRKCY--------RMIGGVLVERT 74 (148)
Q Consensus 10 ~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~-------~VleeL~~l~~dr~~y--------rlVG~VLVe~t 74 (148)
+..|....-+..+..+....+.+..+...+..++.... ++.+.++.++..-++| =.+-++-+.-+
T Consensus 11 K~~peee~~lKkL~dveksv~~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~~ip~~ 90 (135)
T 1i6z_A 11 KSNPEEEVELKKLKDLEVSAEKIANHLQELNKELSGIQQGFLAKELQAEALCKLDRKVKATIEQFMKILEEIDTMVLPEQ 90 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSC
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcc
Confidence 44455455566777777777777777777777765442 2223333332111111 01112223334
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
-.++...=..=+..|...+.++.+-+..+..+++++|.+
T Consensus 91 ~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~~~~~~~~q~~ 129 (135)
T 1i6z_A 91 FKDSRLKRKNLVKKVQVFLAECDTVEQYICQETERLQST 129 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444443333334455566666666666666666666643
No 57
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=48.68 E-value=1.8e+02 Score=27.74 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=10.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHH
Q 032045 76 SEVLPAVQRNKEGIEEVIARLNEA 99 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~q 99 (148)
.+-+..|++.+..|+..++.|+..
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 58
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=48.48 E-value=2e+02 Score=31.11 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=37.1
Q ss_pred ecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032045 73 RTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 73 ~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
..+.+.+..++.++...+..+...+..+..++++++.++.+|...+
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~ 2055 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI 2055 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888888888888888888888888888888888887543
No 59
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=47.50 E-value=24 Score=21.75 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=22.4
Q ss_pred eeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 032045 71 VERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKE 106 (148)
Q Consensus 71 Ve~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~ke 106 (148)
-...|++.+..|...++.+...+..|+.++..++.+
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677777777777777777777777776666544
No 60
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.45 E-value=71 Score=22.43 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 17 IVANMYTSMRSELNQIYSKITELEMEASEHS 47 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~ 47 (148)
++-..+|.|+-+++.+..++..|+..+.|.+
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444555555556566555555555555533
No 61
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.12 E-value=49 Score=21.91 Aligned_cols=43 Identities=12% Similarity=0.298 Sum_probs=28.8
Q ss_pred eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032045 72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+.++.|+-......++.+...|..++.++..+..+++.....|
T Consensus 16 e~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EY 58 (86)
T 1x8y_A 16 EAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEY 58 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666777777777777777777777776554444
No 62
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.96 E-value=93 Score=27.79 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=9.2
Q ss_pred eecHhHHHHHHHHhHHHHHH
Q 032045 72 ERTISEVLPAVQRNKEGIEE 91 (148)
Q Consensus 72 e~tv~Ea~~~Le~r~e~L~~ 91 (148)
++.+..++..|..++.+|..
T Consensus 116 RRrIqyLKekVdnQlsnIrv 135 (562)
T 3ghg_A 116 RSRIEVLKRKVIEKVQHIQL 135 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 63
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=46.41 E-value=48 Score=25.17 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=30.1
Q ss_pred ecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 73 RTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 73 ~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+|+.|+.. +....-...+..|..+++.+++.+++++.+|+
T Consensus 133 KTv~~i~~---E~~rk~~~lv~~L~~~ie~kn~~l~ele~k~~ 172 (172)
T 4e8u_A 133 KTIAELTE---EEARKQELLVQNLRQLVEEKKKDMKEIEELCS 172 (172)
T ss_dssp EEHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35555544 44445567889999999999999999998875
No 64
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=45.14 E-value=97 Score=26.47 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=29.4
Q ss_pred cHhHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhccc
Q 032045 74 TISEVLPAVQRNKEGIEE-------VIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~-------~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
.+.++...|+.++.+|+. .|..|+..+.++..+|.++..++.|.
T Consensus 110 ~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 110 TFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888887775 45566666666667777776665443
No 65
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=45.11 E-value=56 Score=21.46 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=14.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 81 AVQRNKEGIEEVIARLNEALAAKKKEISD 109 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~ 109 (148)
.....+..+...|..++.++..+..+++.
T Consensus 23 ~~~~~~~~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 23 NFAVEAANYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555443
No 66
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=45.08 E-value=1.5e+02 Score=25.42 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCceeeeecceeeeecHhHHH--HHHHHhHHHHHHHHHH
Q 032045 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL-DPSRKCYRMIGGVLVERTISEVL--PAVQRNKEGIEEVIAR 95 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l-~~dr~~yrlVG~VLVe~tv~Ea~--~~Le~r~e~L~~~i~~ 95 (148)
+.........++.|-..+.+|+..-++...-+..|+.. .++.+.-.-...+..+.+...+- ..++.-+...+..|..
T Consensus 30 ~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~ 109 (411)
T 3ghg_C 30 STYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRY 109 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444567777777777777777777777777776654 33444444334555555542221 1133344444444455
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032045 96 LNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 96 l~~ql~~~~kel~~~~~k~~ 115 (148)
|+..+......|..+..++.
T Consensus 110 l~~~~~~~~~~i~~L~~~v~ 129 (411)
T 3ghg_C 110 LQEIYNSNNQKIVNLKEKVA 129 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444443
No 67
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=45.03 E-value=98 Score=23.38 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--------CCce-------eeeecceeeeecHhHHH
Q 032045 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP--------SRKC-------YRMIGGVLVERTISEVL 79 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~--------dr~~-------yrlVG~VLVe~tv~Ea~ 79 (148)
++++=.+|+....++..+.........++.=-..++++|..... -.+| |+.-|.===.....+--
T Consensus 19 L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~N~ 98 (170)
T 3l4q_C 19 LKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNS 98 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHH
Confidence 44455556666666666666666666666666666666554310 0122 44444432223344555
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032045 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
.-|..|+..|......|+..+.........+...+
T Consensus 99 e~LksRL~~l~~sk~~L~e~L~~q~~~~relERem 133 (170)
T 3l4q_C 99 ERLKSRIAEIHESRTKLEQELRAQASDNREIDKRM 133 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666665555544444433
No 68
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=44.84 E-value=71 Score=21.68 Aligned_cols=72 Identities=8% Similarity=0.229 Sum_probs=44.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHH
Q 032045 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEV 92 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~ 92 (148)
+.+..+..+.+.++..+..|...+..|...-..+ |. ...++. -+++..+.....+......|...
T Consensus 5 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~---L~---~~~~~~---------~~~~~l~~l~~~i~~~a~~ik~~ 69 (127)
T 1ez3_A 5 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAI---LA---SPNPDE---------KTKEELEELMSDIKKTANKVRSK 69 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---CSSCCH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh---cCCccH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788999999999999998888886554433 33 222222 14555555555555555555555
Q ss_pred HHHHHHH
Q 032045 93 IARLNEA 99 (148)
Q Consensus 93 i~~l~~q 99 (148)
|+.|+..
T Consensus 70 Lk~l~~~ 76 (127)
T 1ez3_A 70 LKSIEQS 76 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 69
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.23 E-value=65 Score=21.13 Aligned_cols=37 Identities=0% Similarity=0.012 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032045 20 NMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL 56 (148)
Q Consensus 20 ~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 56 (148)
.++++.+..+..+...+.+.+.++.+....++-|..+
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555555666666666666666666666666543
No 70
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=42.78 E-value=1.5e+02 Score=24.92 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHH
Q 032045 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNE 98 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ 98 (148)
+.++-.+-.+...+..+...|.++.++...-+ .. +.. +-...|..+...|...++.++.
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i---~~-----------------~~~-~~~~~l~~~~~~~~~~~~~~~~ 85 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRV---PK-----------------APP-EEKEALIARGKALGEEAKRLEE 85 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SS-----------------SCH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-----------------hcc-ccHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666554432 21 011 2234566666677777777777
Q ss_pred HHHHHHHHHHHHH
Q 032045 99 ALAAKKKEISDFE 111 (148)
Q Consensus 99 ql~~~~kel~~~~ 111 (148)
++..++.++..+-
T Consensus 86 ~~~~~~~~~~~~~ 98 (421)
T 1ses_A 86 ALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776554
No 71
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=42.67 E-value=54 Score=20.79 Aligned_cols=12 Identities=8% Similarity=0.324 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 032045 23 TSMRSELNQIYS 34 (148)
Q Consensus 23 q~Lq~q~q~l~~ 34 (148)
..++.++..++.
T Consensus 12 ~eiRaQYE~ia~ 23 (77)
T 3trt_A 12 RDVRQQYESVAA 23 (77)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
No 72
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=42.62 E-value=45 Score=23.73 Aligned_cols=58 Identities=3% Similarity=0.093 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----CCceeeeecceeeeecHhHHHHHHHH
Q 032045 21 MYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP-----SRKCYRMIGGVLVERTISEVLPAVQR 84 (148)
Q Consensus 21 ~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~-----dr~~yrlVG~VLVe~tv~Ea~~~Le~ 84 (148)
....|+..++.|..++..+...+......+.. -++ ...||+++. ...+-.+|...=..
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~---Cp~gw~~~~~~CY~~~~---~~~tw~~A~~~C~~ 79 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKLLKRQNDILQV---VSQGWKYFKGNFYYFSL---IPKTWYSAEQFCVS 79 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTTCEEETTEEEEECS---SCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCEEeCCEEEEEEC---CCCCHHHHHHHHHh
Confidence 34444444444444444444444443333322 233 478998765 34566666555443
No 73
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=42.07 E-value=88 Score=21.99 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=24.5
Q ss_pred eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
+.....-+..+..|++..+.....|...-..++.++..+.+.
T Consensus 78 k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 78 KIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666665555555555555555544
No 74
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=41.61 E-value=95 Score=29.56 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 18 VANMYTSMRSELNQIYSKITELEMEASEH 46 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~ 46 (148)
+-..+..++..+..+..++..|+.++.+.
T Consensus 869 l~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 869 TKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333
No 75
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=41.39 E-value=54 Score=22.94 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=30.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEH 46 (148)
Q Consensus 12 ~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~ 46 (148)
.++..++..+|+....+...+...+..|+.++...
T Consensus 81 ~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667889999999999999999999999988764
No 76
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=40.10 E-value=97 Score=21.90 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHH
Q 032045 17 IVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQR 84 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~ 84 (148)
.+..+++.|+.+++.|..++..|.. -....-... -..+||+++. ...|-.+|...=..
T Consensus 20 ~~~~~l~~L~~~~~~L~~~l~~l~~-----~~~~~~~~~--~~~~Cy~~~~---~~~tw~~A~~~C~~ 77 (168)
T 1buu_A 20 AIEVKLANMEAEINTLKSKLELTNK-----LHAFSMGKK--SGKKFFVTNH---ERMPFSKVKALCSE 77 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHTTCC--TTSCEEEEEE---EEECHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-----cccCCCeEE--ECCEEEEEeC---CccCHHHHHHHHHh
Confidence 3455677777777777777766654 122233333 2589998864 45666666655544
No 77
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.08 E-value=76 Score=21.25 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=24.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+..++++++.+...+..|......+..++..+...+.
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666677676666666666666666554
No 78
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=39.92 E-value=59 Score=23.58 Aligned_cols=44 Identities=5% Similarity=0.051 Sum_probs=26.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcC
Q 032045 12 PVNEQIVANMYTSMRSELNQIYSKIT--ELEMEASEHSLVINAIKP 55 (148)
Q Consensus 12 ~~~~qe~~~~~q~Lq~q~q~l~~q~~--~Le~ql~E~~~VleeL~~ 55 (148)
-+..+.++.+|+.+|.+++.....-. ..+....+...+-..|..
T Consensus 39 D~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~~ 84 (151)
T 2pih_A 39 NDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELEE 84 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHc
Confidence 36778899999999999887664221 233334444444444443
No 79
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=39.88 E-value=1.3e+02 Score=23.30 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=33.4
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032045 10 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIK 54 (148)
Q Consensus 10 ~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 54 (148)
.++...+.+..++..+......+-..+..+...+.+.+..++.++
T Consensus 87 ~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~ 131 (256)
T 3na7_A 87 KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131 (256)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777778888888888777777777777777777776654
No 80
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.86 E-value=63 Score=19.68 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032045 87 EGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 87 e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+.|......|...+..+.++++++..++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 81
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=39.77 E-value=66 Score=19.92 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=29.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
.+-...|+.+.+.|+..-..|...+..+..++..|..-
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888888888877654
No 82
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.30 E-value=94 Score=21.54 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032045 28 ELNQIYSKITELEMEASEHSLVINAIK 54 (148)
Q Consensus 28 q~q~l~~q~~~Le~ql~E~~~VleeL~ 54 (148)
++..+..++..|+.+-.....=++.|+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444444433
No 83
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=39.10 E-value=49 Score=22.41 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032045 87 EGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 87 e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+.|+.+++.|+.+...+.+++..+..++
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555554443
No 84
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=38.95 E-value=50 Score=22.82 Aligned_cols=28 Identities=7% Similarity=0.141 Sum_probs=20.9
Q ss_pred eecHhHHHHHHHHhHHHHHHHHHHHHHH
Q 032045 72 ERTISEVLPAVQRNKEGIEEVIARLNEA 99 (148)
Q Consensus 72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~q 99 (148)
...|+++..+|+..+..|+..|..|+..
T Consensus 42 c~~Vd~t~~eL~~EI~~L~~eI~~LE~i 69 (96)
T 1t3j_A 42 CQQVDMTQKHLEEEIARLSKEIDQLEKM 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888777766653
No 85
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=38.65 E-value=76 Score=21.52 Aligned_cols=44 Identities=11% Similarity=0.236 Sum_probs=30.5
Q ss_pred eeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032045 71 VERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 71 Ve~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
.+.++.|+.......++.+...|..++.++..+..++......|
T Consensus 24 LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EY 67 (95)
T 3mov_A 24 CLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDY 67 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666667777777788888888888887777766544333
No 86
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=38.48 E-value=60 Score=24.08 Aligned_cols=41 Identities=10% Similarity=0.124 Sum_probs=33.9
Q ss_pred ceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 68 GVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 68 ~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
-++-++.++++...+...+..++..+..|+.+.++.-+++.
T Consensus 20 ~iVTe~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 20 AVVTPTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678899999999999999999999999888766664
No 87
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=37.80 E-value=91 Score=20.92 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 91 EVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 91 ~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
..+..|..++..+..+|..++.++-
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 6777888888888888888877653
No 88
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=37.49 E-value=1.6e+02 Score=23.55 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhc
Q 032045 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLV---INAIK 54 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~V---leeL~ 54 (148)
+..++-..+..+-.++..+..++.+|+.++.+...- ++.|.
T Consensus 93 ~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 93 SLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 456666667777888888888888888877777777 77776
No 89
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=37.08 E-value=78 Score=23.53 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=31.1
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+-+...+.|.++-+..+..|++.+.++..++...+.+|.
T Consensus 83 ~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~ 122 (155)
T 2efr_A 83 SDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYK 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788888888888888888888888887776
No 90
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=36.95 E-value=88 Score=21.15 Aligned_cols=35 Identities=14% Similarity=0.389 Sum_probs=16.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.|++..+.+...|..+......+..+=..|+..|+
T Consensus 29 ~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn 63 (96)
T 3q8t_A 29 DVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYS 63 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 91
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=36.43 E-value=1e+02 Score=21.06 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=17.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 032045 76 SEVLPAVQRNKEGIEEVIARLNEALAAKK 104 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~ 104 (148)
+.-+..+..+++.|...+.+++..|.+++
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666666666666666655553
No 92
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=36.43 E-value=92 Score=20.68 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=32.5
Q ss_pred ecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 66 IGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 66 VG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
..|-|-....-|++..|..+.-..++.|+.|+..+.....+...+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~ee 66 (77)
T 3mtu_E 19 LDPELAQSERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQM 66 (77)
T ss_dssp TCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345567777888998888888888888888888776665555544443
No 93
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=35.87 E-value=1.4e+02 Score=22.53 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=28.4
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
-.+.+..|+.|+..|...++++...+.....+...+++++.
T Consensus 88 ~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~ 128 (168)
T 3o0z_A 88 DSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN 128 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677778888888887777777776666666665543
No 94
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.49 E-value=57 Score=22.03 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032045 27 SELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 27 ~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
.++..-..+|..|+..+.-|+.-|.+|+.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666677777777777777777765
No 95
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=35.29 E-value=20 Score=25.89 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=15.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 82 VQRNKEGIEEVIARLNEALAAKKKEISDF 110 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ql~~~~kel~~~ 110 (148)
|.++++.|...++.+++++..+..++..+
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444
No 96
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=35.06 E-value=2.1e+02 Score=24.31 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032045 92 VIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 92 ~i~~l~~ql~~~~kel~~~~~ 112 (148)
.|..|+.++...+.+|..++.
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~ 126 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQ 126 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 444444444444444444433
No 97
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=35.05 E-value=65 Score=22.50 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=22.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
.+.++.+.....++.|...+..++.+++.|+
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666777888888888888888875
No 98
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.05 E-value=61 Score=19.94 Aligned_cols=35 Identities=6% Similarity=0.216 Sum_probs=22.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
+-...|+.+.+.|+..-..|...+..+..++..+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777666666666666666665543
No 99
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=34.38 E-value=1.2e+02 Score=21.47 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=15.1
Q ss_pred CCceeeeecceeeeecHhHHHHHHHH
Q 032045 59 SRKCYRMIGGVLVERTISEVLPAVQR 84 (148)
Q Consensus 59 dr~~yrlVG~VLVe~tv~Ea~~~Le~ 84 (148)
..+||++.. ...+-.+|...=..
T Consensus 63 ~~~Cy~~~~---~~~~w~~A~~~C~~ 85 (177)
T 1pwb_A 63 GEKIFKTAG---FVKPFTEAQLLCTQ 85 (177)
T ss_dssp TTEEEEEEE---EEEEHHHHHHHHHH
T ss_pred CCEEEEEcC---CccCHHHHHHHHHh
Confidence 479998863 45666666665544
No 100
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=34.04 E-value=1.2e+02 Score=21.77 Aligned_cols=44 Identities=11% Similarity=0.267 Sum_probs=30.0
Q ss_pred eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+||......|++.+....+.++.|+..++.++.++.+...+..
T Consensus 52 NqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 52 NHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766666677777777777777766665543
No 101
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=33.33 E-value=94 Score=19.78 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=35.9
Q ss_pred cceeeee--cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032045 67 GGVLVER--TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 67 G~VLVe~--tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
|||-++- .++.|+.+-+.++..|-+.-..+...+..+++++.+++..+
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 4554442 35566667778888888888889999999999999888653
No 102
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=33.20 E-value=42 Score=23.68 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=36.2
Q ss_pred CceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 032045 60 RKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKK 105 (148)
Q Consensus 60 r~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~k 105 (148)
...|.-||..|- .++..+..+..++..+...|..++.++.++.+
T Consensus 61 g~~YnnVGdAl~--ald~svt~i~~~I~~lt~~i~~~~~~i~~~~~ 104 (106)
T 2yny_A 61 TGIYNNVGSALS--ALNTSMKQIEDKIEEILSKIYHIENEIARIKK 104 (106)
T ss_dssp TEEESSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888886 68888888888888888888888888887765
No 103
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=33.02 E-value=93 Score=22.19 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=33.2
Q ss_pred cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 74 TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
+..+.+..|..+++.|...+..+...+..+...+..+...
T Consensus 77 ~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~~ 116 (146)
T 3hh0_A 77 ETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKE 116 (146)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5677888899999999999999999888888888776553
No 104
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=32.89 E-value=95 Score=19.70 Aligned_cols=43 Identities=2% Similarity=0.048 Sum_probs=36.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032045 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
..+..+.............|-+.+.-++++-.|.+..|+.++.
T Consensus 12 ekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~ 54 (64)
T 3t97_C 12 EKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEE 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888999999999999999999999999988765
No 105
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=32.58 E-value=1.3e+02 Score=24.73 Aligned_cols=29 Identities=7% Similarity=0.135 Sum_probs=24.9
Q ss_pred eeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032045 69 VLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 69 VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
+++.-+.++.+..|+++++.+.+.+..++
T Consensus 239 ~lA~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 239 PLAYINFDEYIKELNEERDILNKDLNKAL 267 (426)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777899999999999999998888884
No 106
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=32.51 E-value=1.9e+02 Score=23.04 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeee-ecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 032045 35 KITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVE-RTISEVLPAVQRNKEGIEEVIARLNEALAAKKKE 106 (148)
Q Consensus 35 q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe-~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~ke 106 (148)
.+..++.-+...+.+++.|....+... ++.... ....+.+..+..++..+...+..|+.++..+...
T Consensus 61 ~~~~~~~~~~k~~~~~~~L~~~~~~~~-----~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 61 ELKRWEAVVSQAEQSLTVVGLATVPSS-----KPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCS-----SCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhcccccccc-----cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345556666666677777776654431 121111 1122334555555555555555555555555555
No 107
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.18 E-value=1.2e+02 Score=20.49 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 86 KEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 86 ~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
+++-.+.|+.+++++....+.|..+.
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555555555443
No 108
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=32.09 E-value=94 Score=19.40 Aligned_cols=46 Identities=13% Similarity=0.323 Sum_probs=32.2
Q ss_pred ceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 032045 68 GVLVERTISEVLPAVQRNKEGIEEVIARLNEALAA---KKKEISDFEAK 113 (148)
Q Consensus 68 ~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~---~~kel~~~~~k 113 (148)
|++=+++.-|++=+|.+.+..|....++|++-+++ -.++++.+-.+
T Consensus 1 ~~veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk 49 (56)
T 2w6b_A 1 GPLGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRK 49 (56)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888899999999999999988888876654 44455554444
No 109
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=31.71 E-value=88 Score=18.93 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=24.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 83 QRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 83 e~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
-.|-+|-+..+.+|++.+.+++.++...+.+|.
T Consensus 4 ~~~aefAERsV~KLek~ID~LEdeL~~eKek~~ 36 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLEDELYAQKLKYK 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 356777788888888888888888777776665
No 110
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.60 E-value=95 Score=19.28 Aligned_cols=39 Identities=8% Similarity=0.114 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032045 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA 52 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee 52 (148)
..+++..+.+.|..+-..|..++..|+.++.-.+..+-+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355677777888888888888888888887776666544
No 111
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=31.58 E-value=1.3e+02 Score=22.84 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=33.4
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032045 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+++...|..+++.|+..+..|+..+..+...+..+....
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (278)
T 1r8e_A 78 EELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888999999999999999999999998888777543
No 112
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=31.40 E-value=1.1e+02 Score=20.14 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=29.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032045 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
..|..+++.+...-.++.-++......++.|+.||--
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~ 39 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 39 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888888888877753
No 113
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.32 E-value=82 Score=18.18 Aligned_cols=32 Identities=9% Similarity=0.115 Sum_probs=23.5
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 11 EPVNEQIVANMYTSMRSELNQIYSKITELEME 42 (148)
Q Consensus 11 ~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~q 42 (148)
+..++.+.-.++.+|+..++.|...+-+|-.+
T Consensus 6 e~mTLeEtkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 6 ERMSLEETKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567777888888888888888777776554
No 114
>2sak_A Staphylokinase; plasminogen activation, fibrinolysis, hydrolase, plasminogen activator; 1.80A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1bui_C*
Probab=30.17 E-value=18 Score=26.12 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=12.2
Q ss_pred Cceeeeecceeeee
Q 032045 60 RKCYRMIGGVLVER 73 (148)
Q Consensus 60 r~~yrlVG~VLVe~ 73 (148)
..-|+|+|.|+|+.
T Consensus 107 ~~~y~Ltg~Viiek 120 (121)
T 2sak_A 107 NPGFNLITKVVIEK 120 (121)
T ss_dssp SCEEEEEEEEEEEC
T ss_pred CCceEEEeEEEEEe
Confidence 56799999999985
No 115
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.96 E-value=1.2e+02 Score=19.83 Aligned_cols=41 Identities=12% Similarity=0.035 Sum_probs=27.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032045 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
+.-+...+.-++.|+..+-+-.+++..++.++..+..++.-
T Consensus 20 E~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 20 ETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777777777776653
No 116
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=29.74 E-value=1.4e+02 Score=20.78 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=18.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
|....+......-...++.++.....++.++..++..+.
T Consensus 44 E~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 44 EQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444455555555555555555554443
No 117
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=29.72 E-value=1.1e+02 Score=24.19 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=26.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
..++++++.|+.+++.+....+.+++.+..+..++.
T Consensus 9 d~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~ 44 (233)
T 2yko_A 9 DQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQ 44 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888877776665543
No 118
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=29.64 E-value=1.9e+02 Score=22.08 Aligned_cols=34 Identities=3% Similarity=0.020 Sum_probs=23.1
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 9 RREPVNEQIVANMYTSMRSELNQIYSKITELEME 42 (148)
Q Consensus 9 ~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~q 42 (148)
+.++...+.++.+++.++.++......+..|...
T Consensus 244 g~~~~~~~~ll~~h~~~~~el~~~~~~v~~l~~~ 277 (322)
T 1u4q_A 244 GDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCAN 277 (322)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888877666555555433
No 119
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=29.35 E-value=1.3e+02 Score=21.16 Aligned_cols=51 Identities=12% Similarity=0.247 Sum_probs=43.5
Q ss_pred cceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032045 67 GGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 67 G~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
|....||-.--.++.++.++.-+..++..++..+..++.++..++..-.|.
T Consensus 40 GsTVEERGl~nsVk~~et~i~~~t~~v~t~k~~i~~~e~~vqalq~ag~i~ 90 (113)
T 1aa0_A 40 GSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIP 90 (113)
T ss_dssp CSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCeeeccccchhhhccccchhhhheeecccccchhhhhhhhHHHHhcCCCC
Confidence 556677888888999999999999999999999999999999998554443
No 120
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=28.95 E-value=1.4e+02 Score=20.23 Aligned_cols=75 Identities=7% Similarity=0.085 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032045 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIA 94 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~ 94 (148)
+..|-.+++.|+.+..........++.++.+.+.-... .++=+..|..++..++..++
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~----------------------~E~Ei~sL~kk~~~lE~eld 61 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQ----------------------LEDDIVQLEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------hHHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999999999999988887765444 34445667788888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032045 95 RLNEALAAKKKEISDFE 111 (148)
Q Consensus 95 ~l~~ql~~~~kel~~~~ 111 (148)
.++.++......++.-.
T Consensus 62 ~~ee~L~ea~~kLee~e 78 (101)
T 3u1c_A 62 QVLEELHKSEDSLLFAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88777777776666543
No 121
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=28.93 E-value=1.5e+02 Score=20.63 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=30.1
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032045 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
..-+..|...++.+...-.++.-++...+..++.|+.||--
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34466777777777777777777888888888888777753
No 122
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=28.80 E-value=1.6e+02 Score=21.01 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=24.6
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 9 RREPVNEQIVANMYTSMRSELNQIYSKITELEM 41 (148)
Q Consensus 9 ~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ 41 (148)
|.+.+.++.++.+++.++.++......+..+..
T Consensus 29 g~dl~~v~~ll~kh~~~~~ei~~~~~~v~~v~~ 61 (213)
T 1cun_A 29 GRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61 (213)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 457788888999999998888776666555543
No 123
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=28.44 E-value=1.6e+02 Score=20.91 Aligned_cols=74 Identities=18% Similarity=0.129 Sum_probs=49.6
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHH
Q 032045 10 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGI 89 (148)
Q Consensus 10 ~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L 89 (148)
.++.+++.++.+++.|+.++......+..|...-.+ |-.-.+ | ..+.+..+++.|
T Consensus 85 ~d~~~v~~ll~kH~afe~El~a~~~~~~~l~~~g~~-------Li~~~~----~--------------~~~~I~~rl~eL 139 (161)
T 3lbx_A 85 EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREE-------RFTMGH----S--------------AHEETKAHIEEL 139 (161)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HSCTTC----T--------------THHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCC----C--------------chHHHHHHHHHH
Confidence 688888888889998888888877777666544432 211111 1 346677777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032045 90 EEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 90 ~~~i~~l~~ql~~~~kel~ 108 (148)
...-+.|..........|.
T Consensus 140 ~~~W~~L~~~~~~R~~~L~ 158 (161)
T 3lbx_A 140 RHLWDLLLELTLEKGDQLL 158 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777776666666554
No 124
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.23 E-value=93 Score=20.39 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=6.6
Q ss_pred HHHhHHHHHHHHHHHHH
Q 032045 82 VQRNKEGIEEVIARLNE 98 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ 98 (148)
|..+++.|+..|..|+.
T Consensus 27 le~~Ie~LE~~i~~le~ 43 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQT 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 125
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=28.18 E-value=1.8e+02 Score=22.39 Aligned_cols=82 Identities=15% Similarity=0.244 Sum_probs=55.1
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhcCCCCCCceeeeecceee--eecHhHHHHHHH
Q 032045 11 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEH-----SLVINAIKPLDPSRKCYRMIGGVLV--ERTISEVLPAVQ 83 (148)
Q Consensus 11 ~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~-----~~VleeL~~l~~dr~~yrlVG~VLV--e~tv~Ea~~~Le 83 (148)
.+.....+...|+.+|..+..+-.....++.-+.+. ..+++++...+ .++.+--.|. ..|.+++-..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~le~ig~~~----~~~~l~~~l~~~~~t~~~la~~~~ 189 (232)
T 2qlz_A 114 EPSTLKEMITDFIKANKELEKVLEAFKTIESYRSSLMRKIKEAYLKEIGDMT----QLAILHYLLLNGRATVEELSDRLN 189 (232)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTT----HHHHHHHHHHSSEEEHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----HHHHHHHHHhcCCCCHHHHHHHhC
Confidence 445677788899998888888888888888888776 55666565533 5555555554 345666666665
Q ss_pred HhHHHHHHHHHHH
Q 032045 84 RNKEGIEEVIARL 96 (148)
Q Consensus 84 ~r~e~L~~~i~~l 96 (148)
-.-..+...+.+|
T Consensus 190 l~~~~V~~~l~~L 202 (232)
T 2qlz_A 190 LKEREVREKISEM 202 (232)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 5555555555544
No 126
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.66 E-value=1.4e+02 Score=20.10 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 18 VANMYTSMRSELNQIYSKITELEMEASE 45 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E 45 (148)
....+.+++.++...-....+++.++..
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~s 48 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQ 48 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444444444444444444444444444
No 127
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.27 E-value=85 Score=25.23 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=16.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
..|..+.+.|...++.+.+++..++.+++.++
T Consensus 64 ~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 64 DSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555555555555555555555554
No 128
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=27.16 E-value=1.6e+02 Score=20.98 Aligned_cols=33 Identities=6% Similarity=0.114 Sum_probs=22.7
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 9 RREPVNEQIVANMYTSMRSELNQIYSKITELEM 41 (148)
Q Consensus 9 ~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ 41 (148)
+.+++..+.++.+++.++.++..-...+..+..
T Consensus 33 ~~d~~~~e~ll~~H~~~~~ei~~~~~~~~~l~~ 65 (185)
T 3lbx_B 33 PRDVSSVELLMKYHQGINAEIETRSKNFSACLE 65 (185)
T ss_dssp --CCSSSCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 567788888889999998888665555555443
No 129
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=27.04 E-value=1.3e+02 Score=19.31 Aligned_cols=62 Identities=10% Similarity=0.118 Sum_probs=43.3
Q ss_pred HHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 46 HSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 46 ~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+..+++|..+=|.-. | -+.++.+++..--+-+..|......|......+..+...+...+.
T Consensus 17 in~~f~~Lr~lvP~~~-----~---~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 17 IKDSFHSLRDSVPSLQ-----G---EKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHTTSGGGT-----T---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----C---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666776655321 1 356777777777777777788888888888888888888776654
No 130
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.92 E-value=1.3e+02 Score=19.34 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=17.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
+..|+.++..++.....+......+...+..+..+
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444444444444444444443
No 131
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.92 E-value=1.8e+02 Score=20.91 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 84 RNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 84 ~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
.+.+.+...+..+.+.+..+++++.++..+
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 132
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.84 E-value=1.2e+02 Score=18.90 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032045 85 NKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 85 r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+++.|+..++.|...-..+..+++.|+..+
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666544
No 133
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.29 E-value=1.6e+02 Score=24.21 Aligned_cols=34 Identities=6% Similarity=0.105 Sum_probs=21.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 82 VQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+.++..|+..++.++..+..++.++..+.....
T Consensus 24 ~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 24 HDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666666666666665543
No 134
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=26.24 E-value=1.4e+02 Score=19.69 Aligned_cols=26 Identities=8% Similarity=0.300 Sum_probs=12.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 032045 79 LPAVQRNKEGIEEVIARLNEALAAKK 104 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~ 104 (148)
+..++.+-..|+..+..++.+++.-+
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33444444445555554444444444
No 135
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=26.14 E-value=1.5e+02 Score=23.07 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=30.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+-+..|...++.++..++.++.++..+..+++.|++...
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888888888888888888888887776443
No 136
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=26.11 E-value=1.4e+02 Score=19.44 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=12.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 032045 79 LPAVQRNKEGIEEVIARLNEALAAKK 104 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~ 104 (148)
+..++.+-..|+..+..++.+++.-+
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444444444555555544444444
No 137
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.08 E-value=1e+02 Score=25.84 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=9.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 032045 81 AVQRNKEGIEEVIARLNEALAAKK 104 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~ 104 (148)
.|+..+..++..++.++..+..+.
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444333333
No 138
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=26.05 E-value=1.3e+02 Score=20.67 Aligned_cols=22 Identities=5% Similarity=-0.070 Sum_probs=18.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHH
Q 032045 12 PVNEQIVANMYTSMRSELNQIY 33 (148)
Q Consensus 12 ~~~~qe~~~~~q~Lq~q~q~l~ 33 (148)
-+..+.++.+|+.+|.+++...
T Consensus 38 D~ea~~li~~F~~~q~~~q~~q 59 (122)
T 2oeq_A 38 DETAYRMFANVRDIQLRLHEKQ 59 (122)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999998765
No 139
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=26.02 E-value=1.9e+02 Score=21.08 Aligned_cols=27 Identities=4% Similarity=0.058 Sum_probs=16.3
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHH
Q 032045 8 ERREPVNEQIVANMYTSMRSELNQIYS 34 (148)
Q Consensus 8 ~~~~~~~~qe~~~~~q~Lq~q~q~l~~ 34 (148)
.+.+||..++++.-++.|++....=..
T Consensus 17 ~~~~p~~~~elik~L~~le~sassDa~ 43 (152)
T 4fla_A 17 QGAGPLLTEELIKALQDLENAASGDAT 43 (152)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhhccccchHH
Confidence 355788889999999988777665443
No 140
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=25.97 E-value=1.5e+02 Score=20.59 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 37 TELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 37 ~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
..+...+.|...++.....- + .+..++...|..+++.|+..|..|+..+..+..-+.
T Consensus 54 r~~G~sl~eI~~~l~~~~~~--~-------------~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T 1q06_A 54 RQVGFNLEESGELVNLFNDP--Q-------------RHSADVKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_dssp HHTTCCHHHHHHHHHHHHCT--T-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHhhhcC--C-------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777654321 1 245677778888888888888877777666665443
No 141
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.32 E-value=1.5e+02 Score=21.01 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcee
Q 032045 23 TSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCY 63 (148)
Q Consensus 23 q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~y 63 (148)
.-|+.+...|..++..|+..+......++.++.+.....+.
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~ 138 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSANAT 138 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45666777777777777777777777777777765554444
No 142
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.96 E-value=1.2e+02 Score=21.34 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032045 24 SMRSELNQIYSKITELEMEASEHSLVINAI 53 (148)
Q Consensus 24 ~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL 53 (148)
.+|+++.....++..|..++++.+.-++.|
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~l 37 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTL 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555544444443
No 143
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=24.82 E-value=98 Score=22.08 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=21.4
Q ss_pred cHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 032045 74 TISEVLPAVQRNKEGIEEVIARLNEALAAK 103 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~ 103 (148)
++.+.+..|.++...+++.++.+..++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777777776554
No 144
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=24.56 E-value=1.3e+02 Score=20.05 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=19.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032045 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEI 107 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel 107 (148)
....|..+++.|...++.|+..+..+...+
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777776666665544
No 145
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=24.55 E-value=1.1e+02 Score=20.04 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=14.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
...+..|.+.+..=+.+|.+|+.-+.-+.+..+
T Consensus 17 ~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~E 49 (75)
T 3a7o_A 17 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTE 49 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 334444444444444444444444444333333
No 146
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.24 E-value=87 Score=16.43 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032045 97 NEALAAKKKEISDFEAKY 114 (148)
Q Consensus 97 ~~ql~~~~kel~~~~~k~ 114 (148)
-+.++++++.+.++++++
T Consensus 7 ykeledlqerlrklrkkl 24 (27)
T 3twe_A 7 YKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344445555555555544
No 147
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=24.14 E-value=1e+02 Score=20.88 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC--CCCCCceeeeecceeeeecHhHHHHHHHH
Q 032045 34 SKITELEMEASEHSLVINAIKP--LDPSRKCYRMIGGVLVERTISEVLPAVQR 84 (148)
Q Consensus 34 ~q~~~Le~ql~E~~~VleeL~~--l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~ 84 (148)
+.+..|+.++...+..+ .+.. +.-..+||+++. ...+-.+|...=..
T Consensus 9 ~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~Cy~~~~---~~~tw~~A~~~C~~ 57 (148)
T 3pbf_A 9 TELYEIKHQILQTMGVL-SLQGSMLSVGDKVFSTNG---QSVNFDTIKEMCTR 57 (148)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTSCEEETTEEEEEEE---EEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHhcceeeCCEEEEEcC---CccCHHHHHHHHhh
Confidence 33444444444444444 2322 344689998874 35677777666554
No 148
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=23.64 E-value=1.5e+02 Score=19.08 Aligned_cols=36 Identities=3% Similarity=-0.014 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLV 49 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~V 49 (148)
-+...+.-++.|+.+.+.+......|...+.+...+
T Consensus 44 IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~~ 79 (82)
T 1am9_A 44 VLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSL 79 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 355678888999999999999999998888876643
No 149
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=23.61 E-value=63 Score=25.24 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=32.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032045 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
+....|..+++.|...+..|...+..+...+..+.....+
T Consensus 76 ~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~~~~~ 115 (249)
T 3qao_A 76 DKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITM 115 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4567788999999999999999998888888877665444
No 150
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=23.45 E-value=1.3e+02 Score=18.28 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=30.4
Q ss_pred eeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 032045 69 VLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKK 104 (148)
Q Consensus 69 VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~ 104 (148)
.+-+...++.+..|...-+.|...++.+++.+++++
T Consensus 14 ~lD~~~~~eik~~L~~QQ~g~~~Li~ivk~DleDL~ 49 (51)
T 3t98_A 14 YIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIK 49 (51)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 455666789999999999999999999999888764
No 151
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=23.40 E-value=63 Score=19.52 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=11.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 032045 79 LPAVQRNKEGIEEVIARLNEA 99 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~q 99 (148)
+..|+.++..|+..+..|...
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556665555555555443
No 152
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.36 E-value=1.4e+02 Score=18.61 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=24.0
Q ss_pred eeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 71 VERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 71 Ve~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
|+..+++|......+++.+-.+-++|+ .|.++...|.
T Consensus 9 v~~qv~ev~~iM~~ni~kvlERGekL~-~L~dkT~~L~ 45 (63)
T 1urq_A 9 VKGAASGVVGELARARLALDERGQKLS-DLEERTAAMM 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 455677888888888777777666665 4444444443
No 153
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=23.25 E-value=1.7e+02 Score=19.53 Aligned_cols=74 Identities=8% Similarity=0.205 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032045 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIA 94 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~ 94 (148)
+..|-.+++.|+.+.........+++.++.+.+.-.+. .++-+..|..++..++..++
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~----------------------~E~ei~sL~kKiq~lE~eld 61 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQ----------------------LEEEQQGLQKKLKGTEDEVE 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------hHHHHHHHHHHHHHHHHHHH
Confidence 45577888899999999988888888888777655433 23334446677777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 032045 95 RLNEALAAKKKEISDF 110 (148)
Q Consensus 95 ~l~~ql~~~~kel~~~ 110 (148)
.+..++......++.-
T Consensus 62 ~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 62 KYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655543
No 154
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.07 E-value=1.7e+02 Score=19.50 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=27.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
..+..+.++|+..=..|..++..+..++..|+.-+-
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888887775443
No 155
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=22.85 E-value=1.6e+02 Score=19.10 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=14.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 82 VQRNKEGIEEVIARLNEALAAKKKEISD 109 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ql~~~~kel~~ 109 (148)
|...++.+..+.+.+..++...+.++..
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~ 31 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKL 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544443
No 156
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=22.48 E-value=2.1e+02 Score=20.29 Aligned_cols=15 Identities=7% Similarity=0.286 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 032045 18 VANMYTSMRSELNQI 32 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l 32 (148)
+...|++|..+++.|
T Consensus 7 i~~~l~~Leae~q~L 21 (119)
T 3etw_A 7 LVGELQALDAEYQNL 21 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 157
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=22.28 E-value=2.2e+02 Score=20.27 Aligned_cols=35 Identities=3% Similarity=0.024 Sum_probs=25.1
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 9 RREPVNEQIVANMYTSMRSELNQIYSKITELEMEA 43 (148)
Q Consensus 9 ~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql 43 (148)
+.+...++.++.+++.++.++......+..|...-
T Consensus 135 g~~~~~v~~ll~~h~~~~~el~~~~~~i~~l~~~~ 169 (213)
T 1cun_A 135 GDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANG 169 (213)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888888888877776666655443
No 158
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.02 E-value=94 Score=21.33 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 86 KEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 86 ~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
...|+..++.+++++..+++++..++.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345666666677777777777766664
No 159
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=21.73 E-value=1.2e+02 Score=19.82 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 86 KEGIEEVIARLNEALAAKKKEISD 109 (148)
Q Consensus 86 ~e~L~~~i~~l~~ql~~~~kel~~ 109 (148)
+..|+..++++...+..++.++++
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~ 51 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhH
Confidence 345666777777777777777764
No 160
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.70 E-value=2.5e+02 Score=20.78 Aligned_cols=82 Identities=11% Similarity=0.176 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcee----eeecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032045 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCY----RMIGGVLVERTISEVLPAVQRNKEGIEEVIA 94 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~y----rlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~ 94 (148)
-.++..|+..+..-...+...+..+...+.=+++|. +..| +||... .-....++.|.+.|...+.
T Consensus 57 ~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT-----asLFeEAN~MVa~a------r~~~~~~e~r~~~L~~ql~ 125 (154)
T 2ocy_A 57 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT-----ASLFDEANNMVADA------RKEKYAIEILNKRLTEQLR 125 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH-----HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 344444544444444444444544444444344332 4455 555422 1122334444444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032045 95 RLNEALAAKKKEISDFE 111 (148)
Q Consensus 95 ~l~~ql~~~~kel~~~~ 111 (148)
.-..-+..++.++..++
T Consensus 126 e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 126 EKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 161
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=21.24 E-value=1.9e+02 Score=19.14 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=24.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
.-.|..+++.|...|.+|.-+++...-+++.+++.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44566677777777777777777777777666653
No 162
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.01 E-value=1.8e+02 Score=18.81 Aligned_cols=24 Identities=8% Similarity=0.279 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 032045 85 NKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 85 r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
..+.+...|..++.++..+..+++
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~ 29 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQ 29 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544443
No 163
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.36 E-value=1.2e+02 Score=24.39 Aligned_cols=40 Identities=8% Similarity=0.207 Sum_probs=35.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032045 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+=+..|..++..+....+.|...++.+..++..+++.+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678899999999999999999999999999999886
No 164
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.15 E-value=1.1e+02 Score=20.63 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=16.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 032045 80 PAVQRNKEGIEEVIARLNEALAAKKK 105 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~k 105 (148)
..|+.++..|+..+..|++++..+..
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777776666543
Done!