BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032047
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U8W|A Chain A, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|B Chain B, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|C Chain C, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|D Chain D, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|E Chain E, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|F Chain F, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
Length = 149
Score = 258 bits (659), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 120/148 (81%), Positives = 134/148 (90%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
MEQTFIMIKPDGVQRGL+GE+I RFEKKGF+LKGLKL++V+R FAEKHYEDLSSK FF
Sbjct: 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++YI SGPVVAMIWEG+ VV TGR IIGATNPA S PGTIRGD AI GRN+IHGSDSV
Sbjct: 61 LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSV 120
Query: 121 ESAQKEIALWFPDGPINWQSSLHPWIYE 148
ESA+KEIALWFPDGP+NWQSS+HPW+YE
Sbjct: 121 ESARKEIALWFPDGPVNWQSSVHPWVYE 148
>pdb|1PKU|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|G Chain G, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|H Chain H, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|I Chain I, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|J Chain J, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|K Chain K, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|L Chain L, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
Length = 150
Score = 227 bits (579), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 104/148 (70%), Positives = 125/148 (84%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
MEQ+FIMIKPDGVQRGL+G+II RFEKKGF L+G+K M V+R FA++HY DLS KPFF
Sbjct: 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+EYI SGPVVAM+WEG+ VV TGR IIGAT P ++APGTIR D A+ GRN+IHGSDSV
Sbjct: 62 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 121
Query: 121 ESAQKEIALWFPDGPINWQSSLHPWIYE 148
++ +KEIALWFP+G W+S+LHPWIYE
Sbjct: 122 DNGKKEIALWFPEGLAEWRSNLHPWIYE 149
>pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|B Chain B, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|C Chain C, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|D Chain D, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|E Chain E, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|F Chain F, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
Length = 152
Score = 199 bits (507), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 94/148 (63%), Positives = 112/148 (75%), Gaps = 1/148 (0%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TFI IKPDGVQRGL+GEII RFE+KGF L +K M ++HY DL +PFF L
Sbjct: 5 ERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGL 64
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S PGTIRGD I GRNIIHGSDSVE
Sbjct: 65 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 124
Query: 122 SAQKEIALWF-PDGPINWQSSLHPWIYE 148
SA+KEIALWF P+ +N++S WIYE
Sbjct: 125 SAEKEIALWFHPEELVNYKSCAQNWIYE 152
>pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|B Chain B, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|C Chain C, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
Length = 151
Score = 199 bits (505), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 94/148 (63%), Positives = 112/148 (75%), Gaps = 1/148 (0%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TFI IKPDGVQRGL+GEII RFE+KGF L +K M ++HY DL +PFF L
Sbjct: 4 ERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGL 63
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S PGTIRGD I GRNIIHGSDSVE
Sbjct: 64 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 123
Query: 122 SAQKEIALWF-PDGPINWQSSLHPWIYE 148
SA+KEIALWF P+ +N++S WIYE
Sbjct: 124 SAEKEIALWFRPEELVNYKSCAQNWIYE 151
>pdb|1S57|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S59|A Chain A, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|B Chain B, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|C Chain C, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|D Chain D, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|E Chain E, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|F Chain F, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
Length = 153
Score = 198 bits (503), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 117/149 (78%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+T+IM+KPDG+QRGLVGEII RFEKKGF L GLK+ + AE+HY+DLS+K FF +
Sbjct: 5 VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPN 64
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
LIEYITSGPVV M WEG GVV + R +IG T+P Q+ PGTIRGDLA+ TGRNI+HGSDS
Sbjct: 65 LIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSP 124
Query: 121 ESAQKEIALWFPDGPI-NWQSSLHPWIYE 148
E+ ++EI LWF +G + W S+L W+ E
Sbjct: 125 ENGKREIGLWFKEGELCKWDSALATWLRE 153
>pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|B Chain B, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|C Chain C, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|D Chain D, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|E Chain E, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|F Chain F, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|2HVD|A Chain A, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|B Chain B, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|C Chain C, Human Nucleoside Diphosphate Kinase A Complexed With Adp
Length = 152
Score = 198 bits (503), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/149 (63%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK M ++HY DL +PFF
Sbjct: 4 CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAG 63
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S PGTIRGD I GRNIIHGSDSV
Sbjct: 64 LVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 123
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
ESA+KEI LWF P+ +++ S WIYE
Sbjct: 124 ESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>pdb|3L7U|A Chain A, Crystal Structure Of Human Nm23-H1
pdb|3L7U|B Chain B, Crystal Structure Of Human Nm23-H1
pdb|3L7U|C Chain C, Crystal Structure Of Human Nm23-H1
Length = 172
Score = 197 bits (501), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/149 (63%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK M ++HY DL +PFF
Sbjct: 24 CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAG 83
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S PGTIRGD I GRNIIHGSDSV
Sbjct: 84 LVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 143
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
ESA+KEI LWF P+ +++ S WIYE
Sbjct: 144 ESAEKEIGLWFHPEELVDYTSCAQNWIYE 172
>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|B Chain B, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|C Chain C, The Awd Nucleotide Diphosphate Kinase From Drosophila
Length = 153
Score = 196 bits (498), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 94/148 (63%), Positives = 111/148 (75%), Gaps = 1/148 (0%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TFIM+KPDGVQRGLVG+II RFE+KGF L LK + EKHY DLS++PFF L
Sbjct: 6 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGL 65
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ Y+ SGPVV M+WEG VVKTGR ++GATNPA S PGTIRGD I GRNIIHGSD+VE
Sbjct: 66 VNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDAVE 125
Query: 122 SAQKEIALWFPDGP-INWQSSLHPWIYE 148
SA+KEIALWF + + W + WIYE
Sbjct: 126 SAEKEIALWFNEKELVTWTPAAKDWIYE 153
>pdb|2HVE|A Chain A, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|B Chain B, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|C Chain C, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
Length = 152
Score = 196 bits (498), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 94/149 (63%), Positives = 110/149 (73%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK M ++HY DL +PFF
Sbjct: 4 CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAG 63
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S PGTIRGD I GRNIIHG DSV
Sbjct: 64 LVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGGDSV 123
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
ESA+KEI LWF P+ +++ S WIYE
Sbjct: 124 ESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>pdb|1NSK|R Chain R, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|L Chain L, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|T Chain T, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|U Chain U, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|N Chain N, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|O Chain O, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
Length = 152
Score = 196 bits (497), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 114/149 (76%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+TFI IKPDGVQRGLVGEII RFE+KGF L +K + ++HY DL +PFF
Sbjct: 4 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPG 63
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S PGTIRGD I GRNIIHGSDSV
Sbjct: 64 LVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 123
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
+SA+KEI+LWF P+ ++++S H W+YE
Sbjct: 124 KSAEKEISLWFKPEELVDYKSCAHDWVYE 152
>pdb|1NUE|A Chain A, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|B Chain B, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|C Chain C, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|D Chain D, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|E Chain E, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|F Chain F, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|3BBB|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBF|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
Length = 151
Score = 196 bits (497), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 114/149 (76%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+TFI IKPDGVQRGLVGEII RFE+KGF L +K + ++HY DL +PFF
Sbjct: 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPG 62
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S PGTIRGD I GRNIIHGSDSV
Sbjct: 63 LVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 122
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
+SA+KEI+LWF P+ ++++S H W+YE
Sbjct: 123 KSAEKEISLWFKPEELVDYKSCAHDWVYE 151
>pdb|3BBC|A Chain A, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|B Chain B, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|C Chain C, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|D Chain D, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|E Chain E, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|F Chain F, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
Length = 151
Score = 193 bits (490), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 113/149 (75%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+TFI IKPDGVQRGLVGEII RFE+KGF L +K + ++HY DL +PFF
Sbjct: 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPG 62
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++Y+ SGPVVAM+WEG VVKTG ++G TNPA S PGTIRGD I GRNIIHGSDSV
Sbjct: 63 LVKYMNSGPVVAMVWEGLNVVKTGAVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 122
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
+SA+KEI+LWF P+ ++++S H W+YE
Sbjct: 123 KSAEKEISLWFKPEELVDYKSCAHDWVYE 151
>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|B Chain B, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|C Chain C, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 153
Score = 192 bits (489), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TFIM+KPDGVQRGLVG+II RFE+KGF L LK + EKHY DLS++PFF L
Sbjct: 6 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGL 65
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ Y+ SGPVV M+WEG VVKTGR ++GATNPA S PGTIRGD I GRNII GSD+VE
Sbjct: 66 VNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIXGSDAVE 125
Query: 122 SAQKEIALWFPDGP-INWQSSLHPWIYE 148
SA+KEIALWF + + W + WIYE
Sbjct: 126 SAEKEIALWFNEKELVTWTPAAKDWIYE 153
>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|B Chain B, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|C Chain C, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|D Chain D, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|E Chain E, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|F Chain F, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization
Length = 182
Score = 192 bits (487), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 117/148 (79%), Gaps = 1/148 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+TFI IKPDGVQRGL+ EII RFE+KGF L G+K++ + FA++HY DL +PFF
Sbjct: 32 LERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNG 91
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L ++++SGPV+AM+WEGEGV+ GR +IGAT+P +SAPGTIRGDLA+V GRNIIHGSD
Sbjct: 92 LCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGP 151
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIY 147
E+A+ EI LWF P+ +++ S+ WIY
Sbjct: 152 ETAKDEIKLWFKPEELVSFTSNSEKWIY 179
>pdb|1UCN|A Chain A, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|B Chain B, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|C Chain C, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
Length = 152
Score = 191 bits (485), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 110/149 (73%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK M ++HY DL +P+F
Sbjct: 4 CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPWFAG 63
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S PGTIRGD I GRNII GSDSV
Sbjct: 64 LVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIGGSDSV 123
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
ESA+KEI LWF P+ +++ S WIYE
Sbjct: 124 ESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate
Kinase B With Unordered Nucleotide-Binding Loop.
pdb|3NGS|A Chain A, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|B Chain B, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|C Chain C, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGT|A Chain A, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|B Chain B, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|C Chain C, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|D Chain D, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|E Chain E, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|F Chain F, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|G Chain G, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|H Chain H, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|I Chain I, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|J Chain J, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|K Chain K, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|L Chain L, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|M Chain M, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|N Chain N, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGU|A Chain A, Structure Of Leishmania Ndkb Complexed With Adp.
pdb|3NGU|B Chain B, Structure Of Leishmania Ndkb Complexed With Adp
Length = 151
Score = 189 bits (480), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 112/148 (75%), Gaps = 1/148 (0%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TFI +KPDGVQRGLVGEII RFE+KG+ L LK++ A+ HY+DL SKPFF +L
Sbjct: 4 ERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFPAL 63
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
++Y +SGP+V M+WEG+ VVK+GR ++GATNPA S PGTIRGD A+ GRN+ HGSDSVE
Sbjct: 64 VKYFSSGPIVCMVWEGKNVVKSGRVLLGATNPADSQPGTIRGDFAVDVGRNVCHGSDSVE 123
Query: 122 SAQKEIALWF-PDGPINWQSSLHPWIYE 148
SA++EIA WF D +W S IYE
Sbjct: 124 SAEREIAFWFKADEIASWTSHSVSQIYE 151
>pdb|3PRV|A Chain A, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|B Chain B, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|C Chain C, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|D Chain D, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|E Chain E, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|F Chain F, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
Length = 157
Score = 188 bits (478), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 112/148 (75%), Gaps = 1/148 (0%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TFI +KPDGVQR LVGEII RFEKKG+ L LK++ A++HY DL+SKPF+ L
Sbjct: 10 ERTFIAVKPDGVQRCLVGEIIQRFEKKGYKLVALKMLQPSAEQAQQHYIDLASKPFYKDL 69
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ Y +SGP+V M+WEG+GVVK GR ++GATNPA S PGTIRGD A+ GRN+ HGSDSV+
Sbjct: 70 VAYFSSGPIVGMVWEGKGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVD 129
Query: 122 SAQKEIALWF-PDGPINWQSSLHPWIYE 148
SA++EIA WF P+ +NW S +YE
Sbjct: 130 SAKREIAFWFKPEELVNWTSHSVKQVYE 157
>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|B Chain B, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|D Chain D, Structure Of Human Nucleoside-diphosphate Kinase 3
Length = 169
Score = 187 bits (475), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 85/148 (57%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+ +KPDGVQR LVGEI+ RFE+KGF L LKL+ +HY +L +PF+G L
Sbjct: 22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRL 81
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
++Y+ SGPVVAM+W+G VV+T R +IGATNPA + PGTIRGD I G+N+IHGSDSVE
Sbjct: 82 VKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVE 141
Query: 122 SAQKEIALWF-PDGPINWQSSLHPWIYE 148
SA++EIALWF D + W+ S W+YE
Sbjct: 142 SARREIALWFRADELLCWEDSAGHWLYE 169
>pdb|4FKX|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKY|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
Length = 161
Score = 184 bits (468), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TFI +KPDGVQR LVGEII RFE KG+ L GLKL+ A++HY DL+SKPF+ L
Sbjct: 12 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 71
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ Y +SGP+V M+WEG GVVK GR ++GATNPA S PGTIRGD A+ GRN+ HGSDSVE
Sbjct: 72 VSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVE 131
Query: 122 SAQKEIALWF-PDGPINWQSSLHPWIYE 148
SA++EIA WF + ++W S IYE
Sbjct: 132 SAKREIAFWFKAEELVSWTSHSVKQIYE 159
>pdb|4F36|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F4A|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
Length = 157
Score = 184 bits (467), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TFI +KPDGVQR LVGEII RFE KG+ L GLKL+ A++HY DL+SKPF+ L
Sbjct: 8 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 67
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ Y +SGP+V M+WEG GVVK GR ++GATNPA S PGTIRGD A+ GRN+ HGSDSVE
Sbjct: 68 VSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVE 127
Query: 122 SAQKEIALWF-PDGPINWQSSLHPWIYE 148
SA++EIA WF + ++W S IYE
Sbjct: 128 SAKREIAFWFKAEELVSWTSHSVKQIYE 155
>pdb|1NDP|A Chain A, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1NDP|B Chain B, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1KDN|A Chain A, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|B Chain B, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|C Chain C, Structure Of Nucleoside Diphosphate Kinase
pdb|2BEF|A Chain A, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|B Chain B, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|C Chain C, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|1BUX|A Chain A, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|B Chain B, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|C Chain C, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|A Chain A, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|B Chain B, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|C Chain C, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|D Chain D, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|E Chain E, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|F Chain F, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1F6T|A Chain A, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|B Chain B, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|C Chain C, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1HIY|A Chain A, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|B Chain B, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|C Chain C, Binding Of Nucleotides To Ndp Kinase
pdb|1S5Z|A Chain A, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|B Chain B, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|C Chain C, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|D Chain D, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|E Chain E, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|F Chain F, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1NDC|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase Complexed
With Dtdp And Mg2+ At 2 A Resolution
Length = 155
Score = 181 bits (459), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/147 (58%), Positives = 108/147 (73%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK + + AE HY + +PFFG L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+IRGD + GRNIIHGSDSVE
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVE 128
Query: 122 SAQKEIALWFPDGPINWQSSLHPWIYE 148
SA +EIALWF + + +P +YE
Sbjct: 129 SANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|2VU5|A Chain A, Crystal Structure Of Pndk From Bacillus Anthracis
Length = 148
Score = 181 bits (459), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+TF+M+KPDGVQR +GEI+ RFEKKGF L G KLM V A +HY + KPFFG
Sbjct: 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGE 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD + +NIIHGSDS+
Sbjct: 61 LVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSL 120
Query: 121 ESAQKEIALWFPDGP-INWQSSLHPWIY 147
ESA++EI ++F + +++ ++ WIY
Sbjct: 121 ESAEREIGIFFKEEELVDYSKLMNEWIY 148
>pdb|1NPK|A Chain A, Refined X-Ray Structure Of Dictyostelium Nucleoside
Diphosphate Kinase At 1,8 Angstroms Resolution
Length = 154
Score = 181 bits (459), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/147 (58%), Positives = 108/147 (73%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK + + AE HY + +PFFG L
Sbjct: 8 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 67
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+IRGD + GRNIIHGSDSVE
Sbjct: 68 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVE 127
Query: 122 SAQKEIALWFPDGPINWQSSLHPWIYE 148
SA +EIALWF + + +P +YE
Sbjct: 128 SANREIALWFKPEELLTEVKPNPNLYE 154
>pdb|3B54|A Chain A, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
pdb|3B54|B Chain B, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
Length = 161
Score = 179 bits (454), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TFI +KPDGVQRGLV +I+ RFEKKG+ L +KL+ D E+HY + KPFF +
Sbjct: 14 ERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKM 73
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ ++ SGP++A +WEG+ VV+ GRTI+GATNP SAPGTIRGD I GRN+ HGSDSV+
Sbjct: 74 VSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVD 133
Query: 122 SAQKEIALWF-PDGPINWQSSLHPWIYE 148
SA++EI LWF + ++W+S+ WIYE
Sbjct: 134 SAEREINLWFKKEELVDWESNQAKWIYE 161
>pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nucleoside
Diphosphate Kinase
Length = 155
Score = 179 bits (454), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 107/147 (72%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+ + PDGV RGLVGEII R+EKKGF L GLK + + AE HY + +PFFG L
Sbjct: 9 ERTFLAVAPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+IRGD + GRNIIHGSDSVE
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVE 128
Query: 122 SAQKEIALWFPDGPINWQSSLHPWIYE 148
SA +EIALWF + + +P +YE
Sbjct: 129 SANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1LWX|A Chain A, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|B Chain B, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|C Chain C, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
Length = 155
Score = 178 bits (451), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 107/147 (72%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK + + AE HY + +PFFG L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+IRGD + GR IIHGSDSVE
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRAIIHGSDSVE 128
Query: 122 SAQKEIALWFPDGPINWQSSLHPWIYE 148
SA +EIALWF + + +P +YE
Sbjct: 129 SANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|3R9L|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Giardia Lamblia Featuring A Disordered Dinucleotide
Binding Site
Length = 155
Score = 178 bits (451), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 108/148 (72%), Gaps = 1/148 (0%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+M+KPDGVQRGLVGEII RFE++GF L +K + E+HY++ +++PFF L
Sbjct: 8 ERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGL 67
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
++++SGPV AM+WEG VV RT++G T PA+SAPGTIRGD I GRNIIHGS +++
Sbjct: 68 CKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLD 127
Query: 122 SAQKEIALWF-PDGPINWQSSLHPWIYE 148
A +EIALWF P+ +W SL IYE
Sbjct: 128 DAAREIALWFKPEEVASWSCSLESHIYE 155
>pdb|1LEO|A Chain A, P100s Nucleoside Diphosphate Kinase
Length = 150
Score = 178 bits (451), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 107/147 (72%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK + + AE HY + +PFFG L
Sbjct: 4 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 63
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ +ITSGPVVAM++EG+GVV + R +IG TN SAPG+IRGD + GRNIIHGSDSVE
Sbjct: 64 VSFITSGPVVAMVFEGKGVVASARLMIGVTNSLASAPGSIRGDFGVDVGRNIIHGSDSVE 123
Query: 122 SAQKEIALWFPDGPINWQSSLHPWIYE 148
SA +EIALWF + + +P +YE
Sbjct: 124 SANREIALWFKPEELLTEVKPNPNLYE 150
>pdb|1NDK|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase
Length = 155
Score = 177 bits (450), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 107/147 (72%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK + + AE HY + +PFFG L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+IRGD + GRNII GSDSVE
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIICGSDSVE 128
Query: 122 SAQKEIALWFPDGPINWQSSLHPWIYE 148
SA +EIALWF + + +P +YE
Sbjct: 129 SANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nucleoside
Diphosphate Kinase
Length = 155
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 107/147 (72%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK + + AE HY + +PFFG L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+IRGD + GRNII GSDSVE
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIAGSDSVE 128
Query: 122 SAQKEIALWFPDGPINWQSSLHPWIYE 148
SA +EIALWF + + +P +YE
Sbjct: 129 SANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1NSP|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 155
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 107/147 (72%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK + + AE HY + +PFFG L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+IRGD + GRNII GSDSVE
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIXGSDSVE 128
Query: 122 SAQKEIALWFPDGPINWQSSLHPWIYE 148
SA +EIALWF + + +P +YE
Sbjct: 129 SANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1B4S|A Chain A, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|B Chain B, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|C Chain C, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1F3F|A Chain A, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|B Chain B, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|C Chain C, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1MN9|A Chain A, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|B Chain B, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|C Chain C, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|3FKB|A Chain A, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|B Chain B, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|C Chain C, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|D Chain D, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|E Chain E, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|F Chain F, Structure Of Ndpk H122g And Tenofovir-Diphosphate
Length = 155
Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 107/147 (72%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK + + AE HY + +PFFG L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+IRGD + GRNII GSDSVE
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVE 128
Query: 122 SAQKEIALWFPDGPINWQSSLHPWIYE 148
SA +EIALWF + + +P +YE
Sbjct: 129 SANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1NCL|A Chain A, Thermal Stability Of Hexameric And Tetrameric Nucleoside,
Diphosphate Kinases
Length = 150
Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 107/147 (72%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK + + AE HY + +PFFG L
Sbjct: 4 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 63
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ +ITSGPVVAM++EG+GVV + R +IG TNP SA G+IRGD + GRNIIHGSDSVE
Sbjct: 64 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAGGSIRGDFGVDVGRNIIHGSDSVE 123
Query: 122 SAQKEIALWFPDGPINWQSSLHPWIYE 148
SA +EIALWF + + +P +YE
Sbjct: 124 SANREIALWFKPEELLTEVKPNPNLYE 150
>pdb|3Q83|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q86|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q86|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q89|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q8U|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8V|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8Y|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
Length = 157
Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+TF+MIKPD VQR L+GE+I R E+KG L G KLM V AE HY + KPF+
Sbjct: 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYND 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
LI +ITS PV AM+ EGE V R IIG+TNP++++PG+IRGDL + GRNIIHGSDS+
Sbjct: 61 LISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSL 120
Query: 121 ESAQKEIALWFPDGPI-NWQSSLHPWIYE 148
ESA++EI LWF + I ++ S W+YE
Sbjct: 121 ESAEREINLWFNENEITSYASPRDAWLYE 149
>pdb|1PAE|X Chain X, Nucleoside Diphosphate Kinase
Length = 155
Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/147 (57%), Positives = 105/147 (71%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK + + AE HY + +PFFG L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ +ITSGPVVA ++EG+GVV + R IG TNP SAPG+IRGD + GRNII GSDSVE
Sbjct: 69 VSFITSGPVVAXVFEGKGVVASARLXIGVTNPLASAPGSIRGDFGVDVGRNIIXGSDSVE 128
Query: 122 SAQKEIALWFPDGPINWQSSLHPWIYE 148
SA +EIALWF + + +P +YE
Sbjct: 129 SANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1XIQ|A Chain A, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|B Chain B, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|C Chain C, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|D Chain D, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|E Chain E, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|F Chain F, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
Length = 157
Score = 172 bits (435), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 104/147 (70%), Gaps = 1/147 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME++FIMIKPDGVQRGLVG II RFEKKG+ L +K++ ++HY++LS +PFF +
Sbjct: 9 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKN 68
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+ YI+ GPVVAM+WEG +VK GR +IG TNP S GTIRGD + +N+IHGSDSV
Sbjct: 69 LVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSV 128
Query: 121 ESAQKEIALWFPDGPI-NWQSSLHPWI 146
SA KEI +WF + W+ + WI
Sbjct: 129 ASANKEINIWFKAEELTQWKHHMKEWI 155
>pdb|1MN7|A Chain A, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
pdb|1MN7|B Chain B, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
Length = 155
Score = 171 bits (433), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 107/147 (72%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK + + AE HY + +P+FG L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPWFGGL 68
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+IRGD + GR+II GSDSVE
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRSIIGGSDSVE 128
Query: 122 SAQKEIALWFPDGPINWQSSLHPWIYE 148
SA +EIALWF + + +P +YE
Sbjct: 129 SANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1WKJ|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKJ|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKK|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKK|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKL|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
pdb|1WKL|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
Length = 137
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 99/131 (75%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+TF+MIKPDGV+RGLVGEI+ RFE+KGF + LKLM + + AE+HY + KPFF
Sbjct: 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPG 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+ +ITSGPVVAM+ EG GVV R ++GAT+P + PGTIRGD A N+IHGS ++
Sbjct: 61 LVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATL 120
Query: 121 ESAQKEIALWF 131
E AQ+EIAL+F
Sbjct: 121 EDAQREIALFF 131
>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4
pdb|1EHW|B Chain B, Human Nucleoside Diphosphate Kinase 4
Length = 162
Score = 166 bits (419), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 99/130 (76%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T + +KPDGVQR LVG++I RFE++GF+L G+K++ +HY+DL KPF+ +L
Sbjct: 25 ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPAL 84
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
I Y++SGPVVAM+WEG VV+ R +IG T+ A++APGTIRGD ++ RN+IH SDSVE
Sbjct: 85 IRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVE 144
Query: 122 SAQKEIALWF 131
AQ+EI LWF
Sbjct: 145 GAQREIQLWF 154
>pdb|2ZUA|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
Length = 174
Score = 166 bits (419), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 107/150 (71%), Gaps = 3/150 (2%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+M+KPDGVQRGL+G+I+ RFE +G + G K M +D+ AE+HY + KPFF L
Sbjct: 25 ERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKPFFDGL 84
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+++ITSGPV AM+WEG+ + RT++G T+PA+SAPGTIRGD + GRN+IHGSD +
Sbjct: 85 VDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESAPGTIRGDYGLDLGRNVIHGSDHED 144
Query: 122 --SAQKEIALWFP-DGPINWQSSLHPWIYE 148
+ ++EI L+F D ++W W+YE
Sbjct: 145 EGANEREIELFFDEDELVDWDQIDSSWLYE 174
>pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|B Chain B, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|C Chain C, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|D Chain D, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|E Chain E, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|F Chain F, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
Length = 136
Score = 159 bits (402), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 75/132 (56%), Positives = 97/132 (73%), Gaps = 1/132 (0%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T ++IKPDG++R L+GEII R E+KG ++ L+L TV A +HY + KPFFGSL
Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 62
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSV 120
+E+ITSGPVVA I EG + R + G T+P Q +APGTIRGD A+ T N++HGSDS
Sbjct: 63 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSA 122
Query: 121 ESAQKEIALWFP 132
ESAQ+EIALWFP
Sbjct: 123 ESAQREIALWFP 134
>pdb|2AZ3|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|G Chain G, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|H Chain H, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|I Chain I, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
Length = 164
Score = 157 bits (397), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 98/150 (65%), Gaps = 3/150 (2%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+M+KPDGVQRGL+G+I+ R E KG + G K M +D A +HY + KPFF L
Sbjct: 9 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGL 68
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ +ITSGPV AM+WEG + R ++GAT+ +APGTIRGD G N+IHGSD +
Sbjct: 69 VSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHED 128
Query: 122 --SAQKEIALWFPDGP-INWQSSLHPWIYE 148
+ ++EIAL+F D ++W W+YE
Sbjct: 129 EGANEREIALFFDDDELVDWDRDASAWVYE 158
>pdb|2AZ1|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
Length = 181
Score = 156 bits (395), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 98/150 (65%), Gaps = 3/150 (2%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+M+KPDGVQRGL+G+I+ R E KG + G K M +D A +HY + KPFF L
Sbjct: 26 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGL 85
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ +ITSGPV AM+WEG + R ++GAT+ +APGTIRGD G N+IHGSD +
Sbjct: 86 VSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHED 145
Query: 122 --SAQKEIALWFPDGP-INWQSSLHPWIYE 148
+ ++EIAL+F D ++W W+YE
Sbjct: 146 EGANEREIALFFDDDELVDWDRDASAWVYE 175
>pdb|3JS9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
Length = 156
Score = 156 bits (394), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+T+IM+KPDGVQRGL+GEI+ RFE KG L K +HY + KPFF
Sbjct: 9 MERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKD 68
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L ++I+ GPV MIWEG +K GR ++G T+P +SA GTIRGD +V NI+H S S
Sbjct: 69 LCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSA 128
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIY 147
E A +E ALWF P+ + W+ S+ WIY
Sbjct: 129 EDAARECALWFTPEQLVTWERSVGGWIY 156
>pdb|2CWK|A Chain A, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2CWK|B Chain B, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2DXD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXE|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXE|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXF|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DXF|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DY9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DY9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DYA|A Chain A, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
pdb|2DYA|B Chain B, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
Length = 160
Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 99/150 (66%), Gaps = 3/150 (2%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T ++IKPD V RGL+GEII RFEKKG + G+K++ +DR AEKHYE+ KPFF +L
Sbjct: 8 ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKAL 67
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR---NIIHGSD 118
I+YIT PVV M+ EG V+ R + GAT+P +APGTIRGD + N+IH SD
Sbjct: 68 IDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASD 127
Query: 119 SVESAQKEIALWFPDGPINWQSSLHPWIYE 148
S ESA++EI+L+F + W Y+
Sbjct: 128 SKESAEREISLFFKPEELFEYPRAADWFYK 157
>pdb|3MPD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
pdb|3MPD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
Length = 151
Score = 149 bits (375), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 97/149 (65%), Gaps = 4/149 (2%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+TFIMIKPD ++R L+ II RFE+KG L K + R E HY LSS PFF
Sbjct: 5 MERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSE 64
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
++E + SG V+AM+W G+ V GR +IG TNP ++ GTIRGD + TG+NIIHGSD V
Sbjct: 65 MVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCV 124
Query: 121 ESAQKEIALWFPDG--PINWQSSLHPWIY 147
E+A+KEI LW D P+++ WIY
Sbjct: 125 ENAEKEIKLWIGDDVQPVSFFDK--EWIY 151
>pdb|1NB2|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Bacillus Halodenitrificans
Length = 150
Score = 147 bits (371), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 91/133 (68%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+M+KPDGVQR LVGE++ RFE KG L G KLM + + A HY +L PFFG L
Sbjct: 3 ERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGL 62
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ TSGPV AM+WEG T R I+GATNP+ +APGTIRGD + GRN IHGSDS
Sbjct: 63 VGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAG 122
Query: 122 SAQKEIALWFPDG 134
SA KEI +F G
Sbjct: 123 SAAKEIGAFFGGG 135
>pdb|2NCK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|2NCK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
Length = 144
Score = 134 bits (337), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 98/148 (66%), Gaps = 6/148 (4%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+T +IKPDG+++G++G+II RFE+KG ++L + + AE Y ++PFF
Sbjct: 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKD 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++++ SGPVV M+ EGE V R I+GATNPAQ+A GTIR D A +N +HGSDS+
Sbjct: 62 LVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSL 121
Query: 121 ESAQKEIALWFPDGPINWQSSLHPWIYE 148
E+A+ EIA +F ++ +H + Y+
Sbjct: 122 ENAKIEIAYFF------RETEIHSYPYQ 143
>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3DDI|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3ENA|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ENA|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ETM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3ETM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3EVM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3EVM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3FCV|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3FCV|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3DKD|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
pdb|3DKD|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
Length = 146
Score = 129 bits (323), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT-VDRPFAEKHYEDLSSKPFFG 59
+++T ++IKPD +R LV EI+ R EKK F + +K + R E+HY++ S + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 60 SLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDS 119
L +++ SGP++++++EG + R + G TNP SAPGTIRGDLA G N+IH SDS
Sbjct: 66 DLCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIGENLIHASDS 125
Query: 120 VESAQKEIALWFPD 133
+SA EI++WFP+
Sbjct: 126 EDSAVDEISIWFPE 139
>pdb|3VGU|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|I Chain I, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|J Chain J, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|K Chain K, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|L Chain L, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|M Chain M, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|N Chain N, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|O Chain O, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|P Chain P, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 126 bits (317), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 84/135 (62%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T +IKPD V + ++GEI RFEK G + K++ + + AE Y + +PFFG L
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDL 63
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ ++TSGPVV + EGE + R ++GATNP ++ GTIR D A N +HGSDS E
Sbjct: 64 VGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVHGSDSPE 123
Query: 122 SAQKEIALWFPDGPI 136
SA +EIA +F + I
Sbjct: 124 SAAREIAYFFAESEI 138
>pdb|3VGS|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGS|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|C Chain C, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|D Chain D, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|E Chain E, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 126 bits (317), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 84/135 (62%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T +IKPD V + ++GEI RFEK G + K++ + + AE Y + +PFFG L
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDL 63
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+ ++TSGPVV + EGE + R ++GATNP ++ GTIR D A N +HGSDS E
Sbjct: 64 VGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVHGSDSPE 123
Query: 122 SAQKEIALWFPDGPI 136
SA +EIA +F + I
Sbjct: 124 SAAREIAYFFEESEI 138
>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3EM1|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3G2X|A Chain A, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|B Chain B, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|C Chain C, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|D Chain D, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|E Chain E, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|F Chain F, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3FC9|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|C Chain C, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|D Chain D, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|E Chain E, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|F Chain F, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
Length = 146
Score = 126 bits (317), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT-VDRPFAEKHYEDLSSKPFFG 59
+++T ++IKPD +R LV EI+ R EKK F + +K + R E+HY++ S + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 60 SLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDS 119
L +++ SGP++++++EG + R + G TNP SAPGTIRGDLA N+IH SDS
Sbjct: 66 DLCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDS 125
Query: 120 VESAQKEIALWFPD 133
+SA EI++WFP+
Sbjct: 126 EDSAVDEISIWFPE 139
>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|B Chain B, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|C Chain C, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|D Chain D, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|E Chain E, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|F Chain F, Escherichia Coli Nucleoside Diphosphate Kinase
Length = 142
Score = 126 bits (316), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 86/136 (63%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+TF +IKP+ V + ++G I RFE GF + G K++ + A Y + KPFF
Sbjct: 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDG 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+E++TSGP+V + EGE V+ R ++GATNPA + GT+R D A N HGSDSV
Sbjct: 62 LVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSV 121
Query: 121 ESAQKEIALWFPDGPI 136
ESA +EIA +F +G +
Sbjct: 122 ESAAREIAYFFGEGEV 137
>pdb|3EMT|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
pdb|3EMT|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
Length = 146
Score = 126 bits (316), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT-VDRPFAEKHYEDLSSKPFFG 59
+++T ++IKPD +R LV EI+ R EKK F + +K + R E+HY++ S + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 60 SLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDS 119
+++ SGP++++++EG + R + G TNP SAPGTIRGDLA G N+IH SDS
Sbjct: 66 DNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIGENLIHASDS 125
Query: 120 VESAQKEIALWFPD 133
+SA EI++WFP+
Sbjct: 126 EDSAVDEISIWFPE 139
>pdb|3PJ9|A Chain A, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|B Chain B, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|C Chain C, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|D Chain D, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
Length = 140
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 85/136 (62%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+T +IKPD V++G++G+I+ RFE G + +K + + + AE Y +PFF
Sbjct: 4 MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKD 63
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+E++ SGPVV I EGEG V R ++GATNP ++ GTIR D A N +HGSDS+
Sbjct: 64 LVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSL 123
Query: 121 ESAQKEIALWFPDGPI 136
E+A+ EI +F I
Sbjct: 124 ENAKIEIEFFFKPNEI 139
>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EJM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EVO|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
pdb|3EVO|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
Length = 146
Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT-VDRPFAEKHYEDLSSKPFFG 59
+++T ++IKPD +R LV EI+ R EKK F + +K + R E+HY++ S + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 60 SLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDS 119
+++ SGP++++++EG + R + G TNP SAPGTIRGDLA N+IH SDS
Sbjct: 66 DNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDS 125
Query: 120 VESAQKEIALWFPD 133
+SA EI++WFP+
Sbjct: 126 EDSAVDEISIWFPE 139
>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4DUT|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4EK2|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4EK2|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4HR2|A Chain A, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
pdb|4HR2|B Chain B, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
Length = 145
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 83/133 (62%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+T +IKPD V + ++G+I RFE G + ++ + R AEK Y + +PFF
Sbjct: 7 LERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKD 66
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+E++ SGPV+ + EGE + R ++GAT+P ++ GTIR D A N +HGSD+
Sbjct: 67 LVEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAP 126
Query: 121 ESAQKEIALWFPD 133
E+A+ EIA +FP+
Sbjct: 127 ETARVEIAFFFPE 139
>pdb|3FBE|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBB|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBC|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
Length = 142
Score = 112 bits (279), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 84/134 (62%), Gaps = 5/134 (3%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT-VDRPFAEKHYEDLSSKPFFG 59
+++T ++IKPD +R LV EI+ R EKK F + +K + R E+HY++ S + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 60 SLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDS 119
L +++ SGP++++++EG + R + G PGTIRGDLA G N+IH SDS
Sbjct: 66 DLCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIGENLIHASDS 121
Query: 120 VESAQKEIALWFPD 133
+SA EI++WFP+
Sbjct: 122 EDSAVDEISIWFPE 135
>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|B Chain B, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|C Chain C, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|D Chain D, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|E Chain E, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|F Chain F, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|G Chain G, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|H Chain H, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTO|A Chain A, Orthorhombic Crystal Form C222 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|A Chain A, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|C Chain C, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTR|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTS|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
Length = 142
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 83/134 (61%), Gaps = 3/134 (2%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+T I++KPD +++G +G+I+ RF ++GF +K LK+ A + Y +PFF
Sbjct: 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQE 62
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNIIHGS 117
L+E+++SGPVVA + EGE +K R IIG T+ ++ AP +IR G+N IH S
Sbjct: 63 LVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHAS 122
Query: 118 DSVESAQKEIALWF 131
DS ESAQ EI F
Sbjct: 123 DSPESAQYEICFIF 136
>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FCW|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3GPA|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
Length = 142
Score = 109 bits (273), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 83/134 (61%), Gaps = 5/134 (3%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT-VDRPFAEKHYEDLSSKPFFG 59
+++T ++IKPD +R LV EI+ R EKK F + +K + R E+HY++ S + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 60 SLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDS 119
L +++ SGP++++++EG + R + G PGTIRGDLA N+IH SDS
Sbjct: 66 DLCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLIHASDS 121
Query: 120 VESAQKEIALWFPD 133
+SA EI++WFP+
Sbjct: 122 EDSAVDEISIWFPE 135
>pdb|3EVW|A Chain A, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|B Chain B, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|C Chain C, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|D Chain D, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|E Chain E, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|F Chain F, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
Length = 142
Score = 109 bits (272), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 83/134 (61%), Gaps = 5/134 (3%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT-VDRPFAEKHYEDLSSKPFFG 59
+++T ++IKPD +R LV EI+ R EKK F + +K + R E+HY++ S + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 60 SLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDS 119
+++ SGP++++++EG + R + G PGTIRGDLA G N+IH SDS
Sbjct: 66 DNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIGENLIHASDS 121
Query: 120 VESAQKEIALWFPD 133
+SA EI++WFP+
Sbjct: 122 EDSAVDEISIWFPE 135
>pdb|4DI6|A Chain A, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|B Chain B, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|C Chain C, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|D Chain D, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|E Chain E, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|F Chain F, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DZ6|A Chain A, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|B Chain B, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|C Chain C, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|D Chain D, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|E Chain E, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|F Chain F, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
Length = 190
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 89/151 (58%), Gaps = 15/151 (9%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKH--YEDL---SSK 55
+++T ++KPDGV+RGL+G+++ RFE+ G + K++ VD A+KH Y+D+ S+
Sbjct: 26 LQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSE 85
Query: 56 PFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR---- 111
+ SLI++I++ PV + EG ++ R + GAT P + PGTIRGD + + +
Sbjct: 86 AVWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNE 145
Query: 112 ------NIIHGSDSVESAQKEIALWFPDGPI 136
N+IH S + A +EI +WF D I
Sbjct: 146 KGFSIYNVIHASANEADAMREIPIWFKDNEI 176
>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|2B8P|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|3B6B|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
Length = 157
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 82/134 (61%), Gaps = 5/134 (3%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT-VDRPFAEKHYEDLSSKPFFG 59
+++T ++IKPD +R LV EI+ R EKK F + +K + R E+HY++ S + +F
Sbjct: 21 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 80
Query: 60 SLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDS 119
+++ SGP++++++EG + R + G PGTIRGDLA N+IH SDS
Sbjct: 81 DNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLIHASDS 136
Query: 120 VESAQKEIALWFPD 133
+SA EI++WFP+
Sbjct: 137 EDSAVDEISIWFPE 150
>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|3EE3|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EIC|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3ELH|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3GP9|A Chain A, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|B Chain B, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|C Chain C, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|D Chain D, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|E Chain E, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|F Chain F, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
Length = 142
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 82/134 (61%), Gaps = 5/134 (3%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT-VDRPFAEKHYEDLSSKPFFG 59
+++T ++IKPD +R LV EI+ R EKK F + +K + R E+HY++ S + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 60 SLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDS 119
+++ SGP++++++EG + R + G PGTIRGDLA N+IH SDS
Sbjct: 66 DNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLIHASDS 121
Query: 120 VESAQKEIALWFPD 133
+SA EI++WFP+
Sbjct: 122 EDSAVDEISIWFPE 135
>pdb|1XQI|A Chain A, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|B Chain B, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|C Chain C, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
Length = 195
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 87/174 (50%), Gaps = 43/174 (24%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT-----VDR--PFAE------- 46
+E+T +++KPD V RGLV EII RF+K G + LK + ++R P +E
Sbjct: 15 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKXVKASPEEIERFYPSSEEWLQSAG 74
Query: 47 ----KHYEDLSSKP---------------FFGSLIEYITSGPVVAMIWEGEGVVKTGRTI 87
K Y++L P +L++Y TSGP V + +G V+ R +
Sbjct: 75 QKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYXTSGPNVVXVLKGNRAVEIVRKL 134
Query: 88 IGATNPAQSAPGTIRG-------DLAIVTGR---NIIHGSDSVESAQKEIALWF 131
+G T+P + PGTIRG DLA GR N++H SDS A++EI WF
Sbjct: 135 VGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWF 188
>pdb|2Y6P|A Chain A, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|B Chain B, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|C Chain C, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
Length = 234
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 75 WEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA--IVTGRNIIHGSDSVESAQKEIALWFP 132
W EG+VKTG +I AT+ + + DL +T ++ GSD V +++ +
Sbjct: 32 WVVEGLVKTGERVILATDSERVK--EVVEDLCEVFLTPSDLPSGSDRVLYVVRDLDV--- 86
Query: 133 DGPINWQSSLHPWIYE 148
D IN+Q P++YE
Sbjct: 87 DLIINYQGD-EPFVYE 101
>pdb|1ORD|A Chain A, Crystallographic Structure Of A Plp-Dependent Ornithine
Decarboxylase From Lactobacillus 30a To 3.1 Angstroms
Resolution
pdb|1ORD|B Chain B, Crystallographic Structure Of A Plp-Dependent Ornithine
Decarboxylase From Lactobacillus 30a To 3.1 Angstroms
Resolution
Length = 730
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 45 AEKHYEDLSSKPFFGSLIEYITSG 68
A +YED PFF SL EY++ G
Sbjct: 98 AVNNYEDSILPPFFKSLKEYVSRG 121
>pdb|2BX6|A Chain A, Crystal Structure Of The Human Retinitis Pigmentosa
Protein 2 (Rp2)
Length = 350
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 15 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMI 74
R L+ E++ KGF L K +++ A++ + + + P F L+ GPV+A+
Sbjct: 251 RKLIDEMV----GKGFFLVQTKEVSMKAEDAQRVFREKA--PDFLPLL---NKGPVIALE 301
Query: 75 WEGEGVVKTGRTIIG 89
+ G+G V+ + I+
Sbjct: 302 FNGDGAVEVCQLIVN 316
>pdb|3KGD|A Chain A, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|B Chain B, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|C Chain C, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|D Chain D, Crystal Structure Of E. Coli Rna 3' Cyclase
Length = 358
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 25/139 (17%)
Query: 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYIT 66
MI DG Q G+I+ + SL M +PF +KP G L +++T
Sbjct: 24 MIALDGAQGEGGGQIL----RSALSLS----MITGQPFTITSIRAGRAKP--GLLRQHLT 73
Query: 67 SGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRG-DLAIVTGRNIIHGSDSVES 122
+ I G T+ GA +Q PGT+RG D G GS ++
Sbjct: 74 AVKAATEIC--------GATVEGAELGSQRLLFRPGTVRGGDYRFAIGSA---GSCTLVL 122
Query: 123 AQKEIALWFPDGPINWQSS 141
ALWF DGP + S
Sbjct: 123 QTVLPALWFADGPSRVEVS 141
>pdb|3BH6|B Chain B, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
pdb|3BH7|B Chain B, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 352
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 15 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMI 74
R L+ E++ KGF L K +++ A++ + + + P F L+ GPV+A+
Sbjct: 253 RKLIDEMV----GKGFFLVQTKEVSMKAEDAQRVFREKA--PDFLPLL---NKGPVIALE 303
Query: 75 WEGEGVVKTGRTIIG 89
+ G+G V+ + I+
Sbjct: 304 FNGDGAVEVCQLIVN 318
>pdb|1QMH|A Chain A, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMH|B Chain B, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
Length = 347
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 25/139 (17%)
Query: 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYIT 66
MI DG Q G+I+ + SL M +PF +KP G L +++T
Sbjct: 5 MIALDGAQGEGGGQIL----RSALSLS----MITGQPFTITSIRAGRAKP--GLLRQHLT 54
Query: 67 SGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRG-DLAIVTGRNIIHGSDSVES 122
+ I G T+ GA +Q PGT+RG D G GS ++
Sbjct: 55 AVKAATEIC--------GATVEGAELGSQRLLFRPGTVRGGDYRFAIGSA---GSCTLVL 103
Query: 123 AQKEIALWFPDGPINWQSS 141
ALWF DGP + S
Sbjct: 104 QTVLPALWFADGPSRVEVS 122
>pdb|3TUT|A Chain A, Crystal Structure Of Rtca.Atp Binary Complex
pdb|3TUX|A Chain A, Crystal Structure Of Rtca.Atp.Mn Ternary Complex
pdb|3TV1|A Chain A, Crystal Structure Of Rtca.Amp Product Complex
pdb|3TV1|B Chain B, Crystal Structure Of Rtca.Amp Product Complex
pdb|3TW3|A Chain A, Crystal Structure Of Rtca.Atp.Co Ternary Complex
Length = 358
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 25/139 (17%)
Query: 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYIT 66
MI DG Q G+I+ + SL M +PF +KP G L +++T
Sbjct: 24 MIALDGAQGEGGGQIL----RSALSLS----MITGQPFTITSIRAGRAKP--GLLRQHLT 73
Query: 67 SGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRG-DLAIVTGRNIIHGSDSVES 122
+ I G T+ GA +Q PGT+RG D G GS ++
Sbjct: 74 AVKAATEIC--------GATVEGAELGSQRLLFRPGTVRGGDYRFAIGSA---GSCTLVL 122
Query: 123 AQKEIALWFPDGPINWQSS 141
ALWF DGP + S
Sbjct: 123 QTVLPALWFADGPSRVEVS 141
>pdb|3K6A|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|D Chain D, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|E Chain E, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|F Chain F, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
Length = 180
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 49 YEDLSSKPFFGSLIEYITS--GPVVAMIWEGEGVVKT 83
YED+S K +L +Y+TS P+ +I + + V++T
Sbjct: 23 YEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIET 59
>pdb|2F7W|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7W|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7W|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7Y|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7Y|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7Y|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
Length = 177
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 49 YEDLSSKPFFGSLIEYITS--GPVVAMIWEGEGVVKT 83
YED+S K +L +Y+TS P+ +I + + V++T
Sbjct: 20 YEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIET 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,752,318
Number of Sequences: 62578
Number of extensions: 186702
Number of successful extensions: 510
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 86
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)