Query 032047
Match_columns 148
No_of_seqs 114 out of 1029
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:53:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00093 nucleoside diphosphat 100.0 4.8E-52 1E-56 305.8 14.7 147 1-147 2-149 (149)
2 PRK14542 nucleoside diphosphat 100.0 1.6E-51 3.4E-56 299.2 14.3 133 1-133 1-133 (137)
3 PRK14541 nucleoside diphosphat 100.0 5.7E-51 1.2E-55 297.3 14.4 133 1-133 1-133 (140)
4 COG0105 Ndk Nucleoside diphosp 100.0 4.1E-51 8.9E-56 290.3 12.7 133 1-133 2-134 (135)
5 PRK14543 nucleoside diphosphat 100.0 5.3E-51 1.2E-55 304.9 13.9 147 1-147 5-167 (169)
6 PLN02619 nucleoside-diphosphat 100.0 4.3E-51 9.4E-56 317.3 13.1 148 1-148 88-236 (238)
7 PRK14545 nucleoside diphosphat 100.0 3.8E-50 8.2E-55 292.7 14.6 133 1-133 3-135 (139)
8 PRK14540 nucleoside diphosphat 100.0 5.4E-50 1.2E-54 290.4 14.6 133 1-133 2-134 (134)
9 PRK00668 ndk mulitfunctional n 100.0 1.1E-49 2.4E-54 288.8 14.1 133 1-133 1-133 (134)
10 cd04415 NDPk7A Nucleoside diph 100.0 5.4E-49 1.2E-53 284.1 12.7 128 2-131 1-131 (131)
11 cd04413 NDPk_I Nucleoside diph 100.0 1.9E-48 4.1E-53 281.0 13.7 130 2-131 1-130 (130)
12 cd04418 NDPk5 Nucleoside dipho 100.0 1.7E-48 3.6E-53 282.0 13.3 129 2-132 1-132 (132)
13 PLN02931 nucleoside diphosphat 100.0 1.9E-48 4.2E-53 293.0 13.8 133 1-133 29-164 (177)
14 cd04414 NDPk6 Nucleoside dipho 100.0 2.8E-48 6.1E-53 281.7 13.5 131 2-132 1-135 (135)
15 cd04412 NDPk7B Nucleoside diph 100.0 3.2E-48 7E-53 281.1 13.2 130 2-131 1-134 (134)
16 PF00334 NDK: Nucleoside dipho 100.0 2E-48 4.3E-53 282.1 11.3 132 2-133 1-132 (135)
17 cd00595 NDPk Nucleoside diphos 100.0 1.3E-47 2.8E-52 277.5 13.1 130 2-131 1-133 (133)
18 cd04416 NDPk_TX NDP kinase dom 100.0 1.6E-47 3.4E-52 276.9 12.4 129 2-131 1-132 (132)
19 smart00562 NDK These are enzym 100.0 8.2E-47 1.8E-51 273.7 13.7 132 2-133 1-132 (135)
20 KOG0888 Nucleoside diphosphate 100.0 1.9E-46 4.2E-51 275.6 9.3 148 1-148 5-156 (156)
21 PRK14544 nucleoside diphosphat 100.0 2.5E-45 5.3E-50 277.1 13.8 133 1-133 3-178 (183)
22 COG1799 Uncharacterized protei 72.8 7.2 0.00016 29.3 4.3 47 2-52 73-119 (167)
23 PF14454 Prok_Ub: Prokaryotic 67.6 2.1 4.5E-05 27.2 0.3 28 39-71 23-50 (65)
24 PF04472 DUF552: Protein of un 53.3 25 0.00054 22.2 3.6 44 5-52 1-44 (73)
25 TIGR03738 PRTRC_C PRTRC system 51.0 8.9 0.00019 24.4 1.1 28 39-71 22-49 (66)
26 COG1844 Uncharacterized protei 50.7 30 0.00066 24.5 3.8 77 4-90 2-81 (125)
27 COG1325 Predicted exosome subu 48.4 19 0.00041 26.6 2.6 24 112-135 14-37 (149)
28 KOG0328 Predicted ATP-dependen 45.8 70 0.0015 26.6 5.8 31 15-45 150-180 (400)
29 PRK09283 delta-aminolevulinic 36.8 46 0.001 27.6 3.5 46 7-54 161-206 (323)
30 PF01408 GFO_IDH_MocA: Oxidore 36.4 65 0.0014 21.4 3.8 45 5-53 66-110 (120)
31 PF13673 Acetyltransf_10: Acet 36.3 1.2E+02 0.0026 19.6 5.1 44 4-51 68-114 (117)
32 cd06335 PBP1_ABC_ligand_bindin 34.0 1.6E+02 0.0034 23.6 6.2 74 3-88 139-214 (347)
33 cd00384 ALAD_PBGS Porphobilino 33.8 40 0.00087 27.9 2.7 46 7-54 153-198 (314)
34 cd06355 PBP1_FmdD_like Peripla 32.3 2E+02 0.0043 23.1 6.6 42 3-44 134-176 (348)
35 PF15323 Ashwin: Developmental 30.4 56 0.0012 25.6 2.9 44 5-53 2-45 (214)
36 PRK13384 delta-aminolevulinic 30.0 54 0.0012 27.2 2.9 45 7-53 163-207 (322)
37 cd04903 ACT_LSD C-terminal ACT 29.8 1E+02 0.0022 17.9 3.6 33 4-38 1-33 (71)
38 KOG4307 RNA binding protein RB 29.7 80 0.0017 29.3 4.0 66 19-126 856-925 (944)
39 cd04823 ALAD_PBGS_aspartate_ri 29.2 51 0.0011 27.3 2.6 46 7-54 158-203 (320)
40 KOG4132 Uroporphyrinogen III s 28.5 3.1E+02 0.0067 22.0 6.8 74 3-91 4-77 (260)
41 PF06130 PduL: Propanediol uti 28.1 31 0.00067 22.2 0.9 20 31-50 4-23 (71)
42 cd00550 ArsA_ATPase Oxyanion-t 27.5 1.4E+02 0.0031 23.3 4.8 33 3-35 162-194 (254)
43 PF07576 BRAP2: BRCA1-associat 27.4 56 0.0012 22.7 2.2 17 41-57 63-79 (110)
44 cd04883 ACT_AcuB C-terminal AC 26.5 1E+02 0.0022 18.5 3.1 13 20-32 56-68 (72)
45 COG1724 Predicted RNA binding 25.8 62 0.0014 20.6 2.0 20 18-37 9-28 (66)
46 TIGR00640 acid_CoA_mut_C methy 25.3 1.8E+02 0.004 20.5 4.6 39 5-45 7-45 (132)
47 PF04455 Saccharop_dh_N: LOR/S 24.1 1.1E+02 0.0024 21.0 3.2 36 1-36 1-38 (103)
48 COG3473 Maleate cis-trans isom 24.0 78 0.0017 25.0 2.6 39 3-43 119-157 (238)
49 KOG2475 CDC45 (cell division c 23.6 5.4E+02 0.012 23.1 7.9 96 8-121 32-133 (587)
50 COG0113 HemB Delta-aminolevuli 23.2 91 0.002 25.9 3.0 46 7-54 166-211 (330)
51 cd04875 ACT_F4HF-DF N-terminal 22.3 1.7E+02 0.0036 17.9 3.6 32 6-39 3-34 (74)
52 COG0673 MviM Predicted dehydro 22.1 1.7E+02 0.0036 23.3 4.4 46 4-53 70-115 (342)
53 KOG2794 Delta-aminolevulinic a 21.7 80 0.0017 25.9 2.4 45 7-53 174-218 (340)
54 PF01842 ACT: ACT domain; Int 21.6 1.8E+02 0.0038 16.7 3.8 37 4-42 2-38 (66)
55 TIGR03407 urea_ABC_UrtA urea A 21.3 4.3E+02 0.0094 21.2 6.8 43 3-45 135-178 (359)
56 cd06331 PBP1_AmiC_like Type I 20.7 4E+02 0.0086 21.0 6.3 73 4-88 134-208 (333)
57 cd04893 ACT_GcvR_1 ACT domains 20.2 1.7E+02 0.0038 18.2 3.4 35 5-41 4-38 (77)
No 1
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=4.8e-52 Score=305.80 Aligned_cols=147 Identities=62% Similarity=1.106 Sum_probs=142.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~na 81 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNV 81 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCccc
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIY 147 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~ 147 (148)
|++||+++||++|..+.|+|||+.||++.++|+|||||++++|.+|++|||++ .+.+|+..+..|+|
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~NavH~Sds~e~A~~Ei~~fF~~~~~~~~~~~~~~~~~ 149 (149)
T PTZ00093 82 VKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSVESAKREIALWFKPEELVSWTSHSSKWIY 149 (149)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccccccceeecCCCHHHHHHHHHHhCChhhccCccccchhhhC
Confidence 99999999999999999999999999999999999999999999999999987 68889888877765
No 2
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.6e-51 Score=299.24 Aligned_cols=133 Identities=44% Similarity=0.706 Sum_probs=131.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
||+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~na 80 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNA 80 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 133 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~ 133 (148)
|++||+++||++|..|.|+|||++||.+.++|+||||||+++|.+|+++|||+
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~~ 133 (137)
T PRK14542 81 VLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDSDANAALEISFFFKG 133 (137)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcCcccceeEECCCCHHHHHHHHHHcCCh
Confidence 99999999999999999999999999999999999999999999999999986
No 3
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=5.7e-51 Score=297.33 Aligned_cols=133 Identities=41% Similarity=0.710 Sum_probs=131.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~na 80 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENA 80 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcH
Confidence 68999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 133 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~ 133 (148)
|++||+++||++|..|.|+|||++||++.++|+||||||+++|.+|++||||+
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vHgSds~e~A~~Ei~~fF~~ 133 (140)
T PRK14541 81 VADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGSDSAENAAIEAGFFFSA 133 (140)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcccccceeEECCCCHHHHHHHHHHcCCh
Confidence 99999999999999999999999999999999999999999999999999986
No 4
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.1e-51 Score=290.28 Aligned_cols=133 Identities=59% Similarity=1.017 Sum_probs=131.6
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+||||+|||||++.++++|+||++++++||+|+.+||+++++++|.+||.+|+++|||++|++||+|||+++++|+|+||
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~a 81 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENA 81 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 133 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~ 133 (148)
|+.+|+++|+|+|..|.|+|||+.||.+...|.||||||+++|+|||++||++
T Consensus 82 i~~~R~l~GaTnp~~A~pGTIRgdfa~~~~~N~vHgSDs~esA~rEIa~~F~~ 134 (135)
T COG0105 82 ISVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGSDSPESAEREIALFFSK 134 (135)
T ss_pred HHHHHHHHCCCCcccCCCCeEeeehhcccCcceEEccCCHHHHhHHhhhccCC
Confidence 99999999999999999999999999999999999999999999999999985
No 5
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=5.3e-51 Score=304.86 Aligned_cols=147 Identities=38% Similarity=0.686 Sum_probs=142.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHH-----HhcCCCChhhHHHhhhcCCEEEEEE
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYE-----DLSSKPFFGSLIEYITSGPVVAMIW 75 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~-----~~~~~~~~~~l~~~~~sgp~v~l~l 75 (148)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||. +|++++||++|+++|+|||+++|+|
T Consensus 5 ~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~valvl 84 (169)
T PRK14543 5 IQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVFVV 84 (169)
T ss_pred cceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEEEE
Confidence 48999999999999999999999999999999999999999999999995 7899999999999999999999999
Q ss_pred eecChhhhHHhHhCCCCCCCCCCCChhcccccC----------CCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCC
Q 032047 76 EGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIV----------TGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHP 144 (148)
Q Consensus 76 ~g~nav~~~r~l~Gp~~p~~a~p~slR~~~g~~----------~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~ 144 (148)
.|+|||++||+++||++|..+.|+|||+.||.+ .++|+||||||+++|.||++||||+ .+.+|+..++.
T Consensus 85 ~g~naI~~~R~l~Gpt~p~~a~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~esA~rEi~~fF~~~e~~~~~~~~~~ 164 (169)
T PRK14543 85 EGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDALREIPIWFKDNEILTYKRDDEC 164 (169)
T ss_pred ECCCHHHHHHHHhCCCCccccCCCcchhhhcccccccccccccceeeEEECCCCHHHHHHHHHHhCCcccccccccccce
Confidence 999999999999999999999999999999986 7899999999999999999999987 68899999999
Q ss_pred ccc
Q 032047 145 WIY 147 (148)
Q Consensus 145 ~~~ 147 (148)
|+|
T Consensus 165 ~~~ 167 (169)
T PRK14543 165 EHY 167 (169)
T ss_pred eEe
Confidence 987
No 6
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=4.3e-51 Score=317.27 Aligned_cols=148 Identities=60% Similarity=1.103 Sum_probs=144.4
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.+|++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+|+
T Consensus 88 ~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~Gena 167 (238)
T PLN02619 88 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEGEGV 167 (238)
T ss_pred hceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEECCcH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|++||+++||++|..+.|+|||+.||.+.++|+|||||++++|.+|++|||++ ++.+|+..++.|+|+
T Consensus 168 V~~~R~LiGpTdP~~A~PgTIRg~fG~~~~rNaVHgSDS~EsA~rEI~~fF~~~ei~~y~~~~~~~~y~ 236 (238)
T PLN02619 168 IKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVSYTSNAEKWIYG 236 (238)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhcccccceeeecCCCHHHHHHHHHHhCCHHhccCCcccchhhhcc
Confidence 99999999999999999999999999999999999999999999999999976 789999999999985
No 7
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=3.8e-50 Score=292.75 Aligned_cols=133 Identities=44% Similarity=0.682 Sum_probs=130.7
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~na 82 (139)
T PRK14545 3 GNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKENA 82 (139)
T ss_pred cceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCCH
Confidence 48999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 133 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~ 133 (148)
|++||+++||++|..|.|+|||++||.+.++|+||||||+++|.+|++||||+
T Consensus 83 v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vH~Sds~e~A~~Ei~~fF~~ 135 (139)
T PRK14545 83 VEDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGSDSDENAQIEGAFHFAG 135 (139)
T ss_pred HHHHHHHhCCCCcccCCCCChhHHhcccccceeEECCCCHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999986
No 8
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=5.4e-50 Score=290.38 Aligned_cols=133 Identities=50% Similarity=0.865 Sum_probs=130.6
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||+.|+++|+|||+++|+|.|+||
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~na 81 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENA 81 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCCh
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 133 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~ 133 (148)
|++||+++||++|..|.|+|||+.||.+.++|++||||++++|.+|++|||++
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~N~vH~Sds~~~a~~E~~~fF~~ 134 (134)
T PRK14540 82 ISTVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHASDSKESAEREIKLFFGE 134 (134)
T ss_pred HHHHHHHhCCCCcccCCCCcchhhhcccccceeEECCCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999985
No 9
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=1.1e-49 Score=288.76 Aligned_cols=133 Identities=59% Similarity=1.025 Sum_probs=130.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|+++|+|||+++|+|.|+||
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~na 80 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENA 80 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchH
Confidence 58999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 133 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~ 133 (148)
|++||+++||++|..+.|+|||++||.+.++|+|||||++++|.+|++||||+
T Consensus 81 v~~~r~l~Gp~~p~~a~p~siR~~~g~~~~~N~vH~sds~~~a~~Ei~~fF~~ 133 (134)
T PRK00668 81 IAKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGSDSPESAAREIALFFSE 133 (134)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccccccccEECCCCHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999986
No 10
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=5.4e-49 Score=284.14 Aligned_cols=128 Identities=38% Similarity=0.687 Sum_probs=125.7
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecChh
Q 032047 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (148)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~nav 81 (148)
|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+|||
T Consensus 1 erTl~iIKPdav~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav 78 (131)
T cd04415 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAI 78 (131)
T ss_pred CeEEEEECcHHHHh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence 79999999999986 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHhCCCCCCCC---CCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcC
Q 032047 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 131 (148)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF 131 (148)
++||+++||++|..| .|+|||++||.+.++|+||||||+++|.+|+++||
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~a~~Ei~~fF 131 (131)
T cd04415 79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAARELEFFF 131 (131)
T ss_pred HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHHHHHHHHHhhC
Confidence 999999999999877 89999999999999999999999999999999998
No 11
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=1.9e-48 Score=281.03 Aligned_cols=130 Identities=63% Similarity=1.092 Sum_probs=128.2
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecChh
Q 032047 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (148)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~nav 81 (148)
|+||+|||||++.++++|+||++|.++||.|++.||++|++++|++||.+|++++||++++++|+|||+++|+|.|+|||
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav 80 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAV 80 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHH
Confidence 79999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcC
Q 032047 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 131 (148)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF 131 (148)
++||+++||++|+.+.|+|||++||++.++|++||||++++|.+|++|||
T Consensus 81 ~~~r~l~Gp~~~~~a~p~slR~~~G~~~~~NavH~sd~~~~a~~E~~~fF 130 (130)
T cd04413 81 KTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSDSVESAEREIALWF 130 (130)
T ss_pred HHHHHHhCCCCccccCCCCchhhhcccccccceECCCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999998
No 12
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=1.7e-48 Score=281.96 Aligned_cols=129 Identities=32% Similarity=0.551 Sum_probs=126.6
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecChh
Q 032047 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (148)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~nav 81 (148)
|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||.+|.+++||+.|+++|+|||+++|+|.|+|||
T Consensus 1 e~Tl~iIKPda~~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV 78 (132)
T cd04418 1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAI 78 (132)
T ss_pred CeEEEEECcHHHhh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence 79999999999987 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHhCCCCCCCC---CCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCC
Q 032047 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 132 (148)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~ 132 (148)
++||+++||++|..| .|+|||+.||.+.++|+|||||++++|.+|+++|||
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF~ 132 (132)
T cd04418 79 SYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREIRFMFP 132 (132)
T ss_pred HHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 999999999999887 899999999999999999999999999999999997
No 13
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=1.9e-48 Score=292.95 Aligned_cols=133 Identities=39% Similarity=0.607 Sum_probs=130.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 29 ~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam~L~g~na 108 (177)
T PLN02931 29 EERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKENA 108 (177)
T ss_pred ceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHHHHHHHHhCCeEEEEEecCCH
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCC---CCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC
Q 032047 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 133 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~ 133 (148)
|++||+++||++|..| .|+|||++||.+.++|+|||||++++|++|+++|||.
T Consensus 109 V~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e~A~~Ei~~fF~~ 164 (177)
T PLN02931 109 VSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPESAEREISFFFGD 164 (177)
T ss_pred HHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCHHHHHHHHHHhCCc
Confidence 9999999999999877 6999999999999999999999999999999999997
No 14
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=2.8e-48 Score=281.73 Aligned_cols=131 Identities=37% Similarity=0.573 Sum_probs=125.9
Q ss_pred cEEEEEEcCcccccCch-HHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 2 EQTFIMIKPDGVQRGLV-GEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 2 e~tl~lIKPda~~~~~~-g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
|+||+|||||++.+++. |.|++.|+++||.|+++||++||+++|++||.+|.+++||++|+++|+|||+++|+|.|+||
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~na 80 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENA 80 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCH
Confidence 79999999999998876 56777788999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCC---CCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCC
Q 032047 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 132 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~ 132 (148)
|++||+++||++|..| .|+|||++||++.++|+|||||++++|.+|+++|||
T Consensus 81 V~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~ 135 (135)
T cd04414 81 IKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPASAQREIALFFP 135 (135)
T ss_pred HHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 9999999999999765 899999999999999999999999999999999997
No 15
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=3.2e-48 Score=281.09 Aligned_cols=130 Identities=31% Similarity=0.522 Sum_probs=127.6
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCC-CChhhHHHhhhcCCEEEEEEeecCh
Q 032047 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSK-PFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~-~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
++||+|||||++.+|++|+||++|+++||.|+++||++||+++|++||.+|+++ +||+.++++|+|||+++|+|.|+||
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~na 80 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENA 80 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcH
Confidence 689999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCC---CCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcC
Q 032047 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 131 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF 131 (148)
|++||+++||++|..| .|+|||+.||++.++|+|||||++++|.+|++|||
T Consensus 81 v~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~~A~~e~~~fF 134 (134)
T cd04412 81 VKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLELKFFF 134 (134)
T ss_pred HHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCCHHHHHHHHHhhC
Confidence 9999999999999876 89999999999999999999999999999999998
No 16
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=2e-48 Score=282.14 Aligned_cols=132 Identities=44% Similarity=0.811 Sum_probs=122.4
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecChh
Q 032047 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (148)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~nav 81 (148)
|+||+|||||++.++++|+||++|.++||.|+++||++||+++|++||..+.++++|+.++++|+||||++|+|+|+|||
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av 80 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAV 80 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHH
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhh
Confidence 79999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC
Q 032047 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 133 (148)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~ 133 (148)
++||+++||++|+.|.|+|||++||.+.++|++||||++++|.||+++|||+
T Consensus 81 ~~~r~l~Gp~dp~~a~p~slR~~~g~~~~~N~vH~sd~~~~a~rE~~~~F~~ 132 (135)
T PF00334_consen 81 EKWRQLCGPTDPEEAAPGSLRARYGTDIIRNAVHGSDSPEDAEREIAFFFPE 132 (135)
T ss_dssp HHHHHHH--SSGGGSSTTSHHHHH-SSSTG-SEEE-SSHHHHHHHHHHHSTG
T ss_pred HHHHHhcCCcchhhhccccchhceeecCCCCeEECCCCHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999999999999999999999999986
No 17
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=1.3e-47 Score=277.49 Aligned_cols=130 Identities=46% Similarity=0.807 Sum_probs=127.1
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecChh
Q 032047 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (148)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~nav 81 (148)
|+||+|||||++.+|++|+||++|+++||.|+++||++||+++|++||.+|.+++||++++++|+|||+++|+|.|+|||
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av 80 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAV 80 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChH
Confidence 68999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHhCCCCCCCC---CCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcC
Q 032047 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 131 (148)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF 131 (148)
++||+++||++|..| .|+|||++||.+.++|+|||||++++|.+|++|||
T Consensus 81 ~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~~a~~Ei~~~F 133 (133)
T cd00595 81 GEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVESAAREIAFFF 133 (133)
T ss_pred HHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCHHHHHHHHHhhC
Confidence 999999999999854 89999999999999999999999999999999998
No 18
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=1.6e-47 Score=276.86 Aligned_cols=129 Identities=33% Similarity=0.595 Sum_probs=126.2
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecChh
Q 032047 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (148)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~nav 81 (148)
|+||+|||||++.+ ++|+|+++|+++||.|++.||++||+++|++||.+|.+++||++++++|+|||+++|+|.|+|||
T Consensus 1 e~Tl~iIKPdav~~-~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av 79 (132)
T cd04416 1 EYTLALIKPDAVAE-KKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAV 79 (132)
T ss_pred CeEEEEEChHHHHH-HHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHH
Confidence 79999999999977 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHhCCCCCCCC---CCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcC
Q 032047 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 131 (148)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF 131 (148)
++||+++||++|..| .|+|||++||.+.++|++||||++++|.+|+++||
T Consensus 80 ~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF 132 (132)
T cd04416 80 EEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEIDFFF 132 (132)
T ss_pred HHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCHHHHHHHHHHhC
Confidence 999999999999876 89999999999999999999999999999999998
No 19
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=8.2e-47 Score=273.73 Aligned_cols=132 Identities=57% Similarity=1.003 Sum_probs=129.6
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecChh
Q 032047 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (148)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~nav 81 (148)
|+||+|||||++.++++|+||++|.++||.|++.||++||+++|++||.++.++++|++++++|+|||+++|+|.|+|||
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav 80 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAV 80 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHH
Confidence 79999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC
Q 032047 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 133 (148)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~ 133 (148)
++||+++||++|..+.|+|||++||.+.++|+|||||++++|.+|+++|||+
T Consensus 81 ~~~r~l~Gp~~~~~~~p~slR~~~G~~~~~N~vH~sd~~~~a~~e~~~~F~~ 132 (135)
T smart00562 81 KTWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGSDSPESAEREIALFFPE 132 (135)
T ss_pred HHHHHHhCCCChhhcCCcchHHhhcccccceeEECCCCHHHHHHHHHHcCCc
Confidence 9999999999998889999999999999999999999999999999999986
No 20
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.9e-46 Score=275.58 Aligned_cols=148 Identities=59% Similarity=1.063 Sum_probs=143.4
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||++||||++.+|++++||.++.++||.|++.|+++++++++++||.++++++||+.|+.||+|||+++|+++|.||
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~ 84 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNV 84 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCC---CCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|+.||+++||++|..| .|+|||+.||.+.++|++|||||.++|+|||.+|||+ .++.|+...++|.|+
T Consensus 85 V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~sA~rEi~~~F~~~e~~~~~~~~~~~~~e 156 (156)
T KOG0888|consen 85 VQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVESAEREIKLWFPEFELVVYESQPERWLYE 156 (156)
T ss_pred HHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHHHHHHHHHhcCchhhheecccchhhhhcC
Confidence 9999999999999887 9999999999999999999999999999999999996 699999999988875
No 21
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.5e-45 Score=277.10 Aligned_cols=133 Identities=44% Similarity=0.795 Sum_probs=127.6
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHh----------------------------
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL---------------------------- 52 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~---------------------------- 52 (148)
.|+||+|||||++.++++|+||++|.+.||.|+++||++||+++|++||.++
T Consensus 3 ~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 82 (183)
T PRK14544 3 IERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLGT 82 (183)
T ss_pred cceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccccccccc
Confidence 4899999999999989999999999999999999999999999999999954
Q ss_pred -----cCCCChhhHHHhhhcCCEEEEEEeecChhhhHHhHhCCCCCCCCCCCChhcccccCC----------CCcEEEeC
Q 032047 53 -----SSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVT----------GRNIIHGS 117 (148)
Q Consensus 53 -----~~~~~~~~l~~~~~sgp~v~l~l~g~nav~~~r~l~Gp~~p~~a~p~slR~~~g~~~----------~~N~vh~S 117 (148)
.+++||++|+++|+|||+++|+|.|+|||++||++|||++|..|.|+|||+.||.+. ++|+||||
T Consensus 83 ~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~P~TIR~~fg~~~~~~~~~~~~~~~NavH~S 162 (183)
T PRK14544 83 DDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAPPGTIRGDYSIDSPDLAAEEGRVVYNLVHAS 162 (183)
T ss_pred ccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCccccCCCCchhhhcccccccccccccceeeEEECC
Confidence 678999999999999999999999999999999999999999999999999999873 79999999
Q ss_pred CCHHHHHHHHhhcCCC
Q 032047 118 DSVESAQKEIALWFPD 133 (148)
Q Consensus 118 ds~~~a~~e~~~fF~~ 133 (148)
|++++|.+|+++||++
T Consensus 163 ds~e~A~rEi~~fF~~ 178 (183)
T PRK14544 163 DSPEEAEREIKFWFRE 178 (183)
T ss_pred CCHHHHHHHHHHhCCh
Confidence 9999999999999976
No 22
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.84 E-value=7.2 Score=29.31 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=37.5
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHh
Q 032047 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL 52 (148)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~ 52 (148)
..++++++|..+.. +.+|.+.|.+....++++. .|++++|++..-..
T Consensus 73 ~s~iv~~ePr~yed--a~~ia~~lk~~k~Vvinl~--~m~~~qArRivDFl 119 (167)
T COG1799 73 SSKIVLLEPRKYED--AQEIADYLKNRKAVVINLQ--RMDPAQARRIVDFL 119 (167)
T ss_pred ceEEEEecCccHHH--HHHHHHHHhcCceEEEEee--eCCHHHHHHHHHHh
Confidence 36899999999987 7899999988777777765 46999998875443
No 23
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=67.62 E-value=2.1 Score=27.23 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=23.1
Q ss_pred ecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEE
Q 032047 39 TVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVV 71 (148)
Q Consensus 39 ~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v 71 (148)
.|+.+++++||... |++|...-..||.+
T Consensus 23 ~~spe~V~~~ya~~-----YPeL~tA~v~gP~v 50 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQ-----YPELTTAEVEGPEV 50 (65)
T ss_pred CCCHHHHHHHHhhh-----ChhhheeeecCCeE
Confidence 57999999999876 88988777778865
No 24
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=53.27 E-value=25 Score=22.24 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=29.0
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHh
Q 032047 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL 52 (148)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~ 52 (148)
+++++|..+.. +.+|.+.|.+....+.++ -.|+.++++++....
T Consensus 1 I~v~~p~~~~D--~~~i~~~l~~g~~Vivnl--~~l~~~~~~Ri~Dfl 44 (73)
T PF04472_consen 1 IVVFEPKSFED--AREIVDALREGKIVIVNL--ENLDDEEAQRILDFL 44 (73)
T ss_dssp -EEEE-SSGGG--HHHHHHHHHTT--EEEE---TTS-HHHHHHHHHHH
T ss_pred CEEEeeCCHHH--HHHHHHHHHcCCEEEEEC--CCCCHHHHHHHHHHH
Confidence 36889999887 789999998775555554 567888888775443
No 25
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=51.01 E-value=8.9 Score=24.40 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=22.3
Q ss_pred ecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEE
Q 032047 39 TVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVV 71 (148)
Q Consensus 39 ~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v 71 (148)
.|++++.+.||... |++|...--+||++
T Consensus 22 ~~spe~V~dfYs~~-----YPeLttA~v~gP~~ 49 (66)
T TIGR03738 22 AMSPEQVRDFYSAQ-----YPELLNAEVEGPVV 49 (66)
T ss_pred CCCHHHHHHHHhcc-----CchheeeeeeCCeE
Confidence 67899999999875 88887666677765
No 26
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.70 E-value=30 Score=24.53 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=45.8
Q ss_pred EEEEEcCcccccCchHHHHHHHHHc-CCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEee--cCh
Q 032047 4 TFIMIKPDGVQRGLVGEIIIRFEKK-GFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEG--EGV 80 (148)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~-gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g--~na 80 (148)
|++||+-|...+ +-..|..|++. |++|.+ |--.+.++.|.+.+...-|.. -+...-..+.++++ ..|
T Consensus 2 t~vliR~Ds~~K--il~ALaDleRyagiki~g-kPrii~p~~aD~~~~~ilGe~-------R~k~~~aa~a~v~~~a~~a 71 (125)
T COG1844 2 TIVLIRADSYDK--ILTALADLERYAGIKIRG-KPRIIPPELADEILSSILGEV-------RKKCKVAAVAEVEEPASKA 71 (125)
T ss_pred eEEEEecCcHHH--HHHHHHHHHHhcCceeec-CCcccChhhHHHHHHHHHHHH-------hcccchhheeeecCccHHH
Confidence 899999998775 55667777664 555554 455577777777765554321 00111122233444 458
Q ss_pred hhhHHhHhCC
Q 032047 81 VKTGRTIIGA 90 (148)
Q Consensus 81 v~~~r~l~Gp 90 (148)
|.++|++=-|
T Consensus 72 I~rIr~IHPP 81 (125)
T COG1844 72 IGRIRKIHPP 81 (125)
T ss_pred HHHHHhcCCC
Confidence 8888887533
No 27
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=48.41 E-value=19 Score=26.59 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.7
Q ss_pred cEEEeCCCHHHHHHHHhhcCCCCC
Q 032047 112 NIIHGSDSVESAQKEIALWFPDGP 135 (148)
Q Consensus 112 N~vh~Sds~~~a~~e~~~fF~~~~ 135 (148)
=.+|++.+++.+.+-|..|||+.+
T Consensus 14 v~iHaTED~~kV~eAL~~~~p~~~ 37 (149)
T COG1325 14 VIIHATEDEEKVLEALENFFPEAI 37 (149)
T ss_pred EEEEccCCHHHHHHHHHHhcCccc
Confidence 359999999999999999999865
No 28
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=45.76 E-value=70 Score=26.64 Aligned_cols=31 Identities=13% Similarity=0.385 Sum_probs=27.3
Q ss_pred cCchHHHHHHHHHcCCcccceEEeecCHHHH
Q 032047 15 RGLVGEIIIRFEKKGFSLKGLKLMTVDRPFA 45 (148)
Q Consensus 15 ~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a 45 (148)
.|-.|.|++.|....+.-.+.||+.|++.+-
T Consensus 150 sGtPGrv~dmikr~~L~tr~vkmlVLDEaDe 180 (400)
T KOG0328|consen 150 SGTPGRVLDMIKRRSLRTRAVKMLVLDEADE 180 (400)
T ss_pred eCCCchHHHHHHhccccccceeEEEeccHHH
Confidence 3557999999999999999999999998763
No 29
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=36.77 E-value=46 Score=27.65 Aligned_cols=46 Identities=22% Similarity=0.514 Sum_probs=38.1
Q ss_pred EEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcC
Q 032047 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (148)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~ 54 (148)
+|-|..+-.|+++.|-+.|.++||. .+-.+.-+...|..||+..++
T Consensus 161 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRd 206 (323)
T PRK09283 161 IVAPSDMMDGRVGAIREALDEAGFT--DVPIMSYSAKYASAFYGPFRD 206 (323)
T ss_pred EEEcccccccHHHHHHHHHHHCCCC--CCceeecHHHHHHhhhHHHHH
Confidence 5667777778899999999999994 466777788999999998763
No 30
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=36.40 E-value=65 Score=21.41 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=36.0
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhc
Q 032047 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (148)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~ 53 (148)
++|--|+... .+++..+.+.|..|..-|-+.++.++++++....+
T Consensus 66 V~I~tp~~~h----~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~ 110 (120)
T PF01408_consen 66 VIIATPPSSH----AEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAK 110 (120)
T ss_dssp EEEESSGGGH----HHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEecCCcch----HHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHH
Confidence 4555566432 57888888999999999999999999999986643
No 31
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=36.28 E-value=1.2e+02 Score=19.60 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=27.5
Q ss_pred EEEEEcCcccccCchHHHHHHHHHc---CCcccceEEeecCHHHHHHHHHH
Q 032047 4 TFIMIKPDGVQRGLVGEIIIRFEKK---GFSLKGLKLMTVDRPFAEKHYED 51 (148)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~---gf~I~~~k~~~l~~~~a~~~y~~ 51 (148)
..+.|.|+.-.+|....+++.+.+. |+....+. +...|..||..
T Consensus 68 ~~l~v~p~~r~~Gig~~Ll~~~~~~~~~~~~~l~~~----~~~~a~~~y~~ 114 (117)
T PF13673_consen 68 SHLYVLPEYRGRGIGRALLDAAEKEAKDGIRRLTVE----ANERARRFYRK 114 (117)
T ss_dssp EEEEE-GGGTTSSHHHHHHHHHHHHHTTTCEEEEEE----C-HHHHHHHHH
T ss_pred EEEEEChhhcCCcHHHHHHHHHHHHHHcCCcEEEEE----eCHHHHHHHHh
Confidence 3567888887777544555655442 66655555 77778888865
No 32
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=33.96 E-value=1.6e+02 Score=23.63 Aligned_cols=74 Identities=7% Similarity=0.139 Sum_probs=42.4
Q ss_pred EEEEEEcCcc-cccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCC-EEEEEEeecCh
Q 032047 3 QTFIMIKPDG-VQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGP-VVAMIWEGEGV 80 (148)
Q Consensus 3 ~tl~lIKPda-~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp-~v~l~l~g~na 80 (148)
+.+++|-++. .-+.....+.+.+.+.|..++....+..+..+.. +.+.....+|| ++.+...+.++
T Consensus 139 ~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s------------~~i~~i~~~~~d~v~~~~~~~~~ 206 (347)
T cd06335 139 KKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMT------------AQLLRAKAAGADAIIIVGNGPEG 206 (347)
T ss_pred CeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCCCccHH------------HHHHHHHhCCCCEEEEEecChHH
Confidence 4566776664 3334456777888888988887666654432222 22223345677 44444556666
Q ss_pred hhhHHhHh
Q 032047 81 VKTGRTII 88 (148)
Q Consensus 81 v~~~r~l~ 88 (148)
+.-++++-
T Consensus 207 ~~~~~~~~ 214 (347)
T cd06335 207 AQIANGMA 214 (347)
T ss_pred HHHHHHHH
Confidence 66565543
No 33
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=33.84 E-value=40 Score=27.89 Aligned_cols=46 Identities=20% Similarity=0.460 Sum_probs=37.6
Q ss_pred EEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcC
Q 032047 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (148)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~ 54 (148)
+|-|..+-.|+++.|-+.|.++|| ..+-.+.-+...|..||+..++
T Consensus 153 iVAPSdMMDGrV~aIR~aLd~~g~--~~v~ImsYsaKyaSafYGPFRd 198 (314)
T cd00384 153 IVAPSDMMDGRVAAIREALDEAGF--SDVPIMSYSAKYASAFYGPFRD 198 (314)
T ss_pred eeecccccccHHHHHHHHHHHCCC--CCCceeecHHHhhhhccchHHH
Confidence 566777777889999999999999 4566677788889999988763
No 34
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=32.32 E-value=2e+02 Score=23.09 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=26.2
Q ss_pred EEEEEEcCcc-cccCchHHHHHHHHHcCCcccceEEeecCHHH
Q 032047 3 QTFIMIKPDG-VQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPF 44 (148)
Q Consensus 3 ~tl~lIKPda-~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~ 44 (148)
+++++|-+|. +-......+-+.+.+.|++|+....+.....+
T Consensus 134 k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D 176 (348)
T cd06355 134 KRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTD 176 (348)
T ss_pred CeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhh
Confidence 5677787774 33333445556677888888876666554433
No 35
>PF15323 Ashwin: Developmental protein
Probab=30.38 E-value=56 Score=25.58 Aligned_cols=44 Identities=9% Similarity=0.256 Sum_probs=36.2
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhc
Q 032047 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (148)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~ 53 (148)
..++.|+.+.. ..++..|.+.++.+.+ ...++.++..++|..|.
T Consensus 2 ~~LlhPElLS~---~~Ll~iL~~r~I~~~~--~~~~~kd~L~~Ly~q~~ 45 (214)
T PF15323_consen 2 ELLLHPELLSR---EFLLLILRQRNIDVEN--DEKLDKDELTELYVQHA 45 (214)
T ss_pred ccccChhhcCH---HHHHHHHHHcCcCccc--hhhcCHHHHHHHHHHHh
Confidence 45789999884 6788888899888877 67889999999997764
No 36
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=30.02 E-value=54 Score=27.20 Aligned_cols=45 Identities=22% Similarity=0.449 Sum_probs=37.0
Q ss_pred EEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhc
Q 032047 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (148)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~ 53 (148)
+|-|..+-.|+++.|-+.|.++||. .+-.+.-+-..|..||+..+
T Consensus 163 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFR 207 (322)
T PRK13384 163 MLAPSAMMDGQVKAIRQGLDAAGFE--HVAILAHSAKFASSFYGPFR 207 (322)
T ss_pred eEecccccccHHHHHHHHHHHCCCC--CCceeehhHhhhhhhcchHH
Confidence 5667777778899999999999994 46667778888999998876
No 37
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.82 E-value=1e+02 Score=17.90 Aligned_cols=33 Identities=12% Similarity=0.326 Sum_probs=23.8
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCcccceEEe
Q 032047 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLM 38 (148)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~ 38 (148)
|+.+.-+|. .|.+++|.+.|.+.|..|..+...
T Consensus 1 ~l~i~~~d~--~g~l~~i~~~l~~~~~~I~~~~~~ 33 (71)
T cd04903 1 TLIVVHKDK--PGAIAKVTSVLADHEINIAFMRVS 33 (71)
T ss_pred CEEEEeCCC--CChHHHHHHHHHHcCcCeeeeEEE
Confidence 345555653 345789999999999999877643
No 38
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=29.74 E-value=80 Score=29.27 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCcccceEEe--ecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecChhhhHHhHhCCCCCCCC
Q 032047 19 GEIIIRFEKKGFSLKGLKLM--TVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQS 96 (148)
Q Consensus 19 g~Ii~~i~~~gf~I~~~k~~--~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~nav~~~r~l~Gp~~p~~a 96 (148)
+++-+.+.+-|.+++.++-+ ..+-++..+||..|+ -
T Consensus 856 ~~~~~~~~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~------------------------------------------~ 893 (944)
T KOG4307|consen 856 QELMELIKSPGPRVLSCNNFPFDVTLEDIVEFFNDYE------------------------------------------P 893 (944)
T ss_pred HHHHHhcCCCCCeEEEecCCCccccHHHHHHHhcccc------------------------------------------c
Confidence 45556666777777766665 444555666655543 2
Q ss_pred CCCChhcccccC--CCCcEEEeCCCHHHHHHH
Q 032047 97 APGTIRGDLAIV--TGRNIIHGSDSVESAQKE 126 (148)
Q Consensus 97 ~p~slR~~~g~~--~~~N~vh~Sds~~~a~~e 126 (148)
.|++||-+|+.+ .+..+.-+.+|+++|.+-
T Consensus 894 ~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A 925 (944)
T KOG4307|consen 894 DPNSIRIRRNDDGVPTGECMVAFESQEEARRA 925 (944)
T ss_pred CCCceeEeecCCCCcccceeEeecCHHHHHhh
Confidence 488888888876 446677788888888764
No 39
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=29.25 E-value=51 Score=27.34 Aligned_cols=46 Identities=17% Similarity=0.503 Sum_probs=37.4
Q ss_pred EEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcC
Q 032047 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (148)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~ 54 (148)
+|-|..+-.|+++.|-+.|.++||. .+-.+.-+...|..||+..++
T Consensus 158 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRd 203 (320)
T cd04823 158 IVAPSDMMDGRIGAIREALDAEGFT--NVSILSYAAKYASAFYGPFRD 203 (320)
T ss_pred EEEcccchhhHHHHHHHHHHHCCCC--CCceeechHHhhhhccchhHH
Confidence 5667777778899999999999994 456677788899999988763
No 40
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=28.52 E-value=3.1e+02 Score=21.97 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=51.1
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecChhh
Q 032047 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVK 82 (148)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~nav~ 82 (148)
.++.++|-+... .......+...||..+-+-.++..--..++|-......+-| ..+++..+.||+
T Consensus 4 ~~vlllK~~s~~---~D~Y~~~l~~~~~epifIP~l~f~f~~l~~lr~kL~~p~kY------------~giIfTSpR~VE 68 (260)
T KOG4132|consen 4 VTVLLLKNKSVP---IDPYEEELRSYGLEPIFIPVLSFTFVNLQQLRAKLNNPPKY------------AGIIFTSPRCVE 68 (260)
T ss_pred eeEEEecCCCCC---CCHHHHHHHhcCCCceeecceeeeeccHHHHHHHhcCchhh------------ceeEEeChHHHH
Confidence 388999988766 36788899999999887766655544344443332222112 127788899999
Q ss_pred hHHhHhCCC
Q 032047 83 TGRTIIGAT 91 (148)
Q Consensus 83 ~~r~l~Gp~ 91 (148)
.+.+-++++
T Consensus 69 a~~eaL~q~ 77 (260)
T KOG4132|consen 69 ALNEALIQT 77 (260)
T ss_pred HHHHHhccc
Confidence 999999877
No 41
>PF06130 PduL: Propanediol utilisation protein PduL; InterPro: IPR008300 Salmonella enterica subsp. enterica serovar Typhimurium degrades 1,2-propanediol by a pathway that requires coenzyme B12, adenosylcobalamin (AdoCbl). Proteins required for 1,2-propanediol degradation are encoded by the pdu operon []. PduL functions in this pathway, but its exact role is not yet determined. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilization of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilization (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and coregulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR010254 from INTERPRO and IPR009204 from INTERPRO for more details on the propanediol utilization pathway and the pdu operon.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=28.08 E-value=31 Score=22.18 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=17.5
Q ss_pred cccceEEeecCHHHHHHHHH
Q 032047 31 SLKGLKLMTVDRPFAEKHYE 50 (148)
Q Consensus 31 ~I~~~k~~~l~~~~a~~~y~ 50 (148)
.|+..|.++|++++|+.|+.
T Consensus 4 viva~RHIHms~~da~~l~~ 23 (71)
T PF06130_consen 4 VIVAARHIHMSPEDAEKLFG 23 (71)
T ss_pred EEEEccccCCCHHHHHHhCC
Confidence 46788999999999999975
No 42
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=27.48 E-value=1.4e+02 Score=23.30 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=25.7
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCcccce
Q 032047 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGL 35 (148)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~ 35 (148)
.+++++.|+.....-+...++.+.+.|..+.+.
T Consensus 162 ~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gv 194 (254)
T cd00550 162 SFRLVCIPEKMSLYETERAIQELAKYGIDVDAV 194 (254)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEE
Confidence 468899999887655778889999988876443
No 43
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=27.40 E-value=56 Score=22.71 Aligned_cols=17 Identities=41% Similarity=0.868 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHhcCCCC
Q 032047 41 DRPFAEKHYEDLSSKPF 57 (148)
Q Consensus 41 ~~~~a~~~y~~~~~~~~ 57 (148)
+.+.|.+||..+.|++|
T Consensus 63 ~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 63 DQESADEFYEEFNGKPF 79 (110)
T ss_pred CHHHHHHHHHHhCCCcc
Confidence 67889999999999977
No 44
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.51 E-value=1e+02 Score=18.48 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=6.3
Q ss_pred HHHHHHHHcCCcc
Q 032047 20 EIIIRFEKKGFSL 32 (148)
Q Consensus 20 ~Ii~~i~~~gf~I 32 (148)
.+++.|.+.||.+
T Consensus 56 ~~~~~L~~~G~~v 68 (72)
T cd04883 56 PIIEDLRRAGYEV 68 (72)
T ss_pred HHHHHHHHCCCee
Confidence 4444455555444
No 45
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=25.85 E-value=62 Score=20.56 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=17.3
Q ss_pred hHHHHHHHHHcCCcccceEE
Q 032047 18 VGEIIIRFEKKGFSLKGLKL 37 (148)
Q Consensus 18 ~g~Ii~~i~~~gf~I~~~k~ 37 (148)
..++|+.|+..||..+.+|=
T Consensus 9 ~ke~ik~Le~~Gf~~vrqkG 28 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQKG 28 (66)
T ss_pred HHHHHHHHHhCCcEEEEeec
Confidence 46899999999999988874
No 46
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.31 E-value=1.8e+02 Score=20.54 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=25.4
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHH
Q 032047 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFA 45 (148)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a 45 (148)
++-+++|....| ..-+-..|+..||+++..-... +.+++
T Consensus 7 ~a~~g~D~Hd~g-~~iv~~~l~~~GfeVi~lg~~~-s~e~~ 45 (132)
T TIGR00640 7 VAKMGQDGHDRG-AKVIATAYADLGFDVDVGPLFQ-TPEEI 45 (132)
T ss_pred EEeeCCCccHHH-HHHHHHHHHhCCcEEEECCCCC-CHHHH
Confidence 455667766644 2334466689999999998774 44444
No 47
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=24.13 E-value=1.1e+02 Score=21.03 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=26.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcC--CcccceE
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKG--FSLKGLK 36 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~g--f~I~~~k 36 (148)
|....+-|.=+-+..+++.++++.|.+.| |.|....
T Consensus 1 ~~s~~VeL~GHLiDSgil~~vLD~I~d~GG~F~i~~~~ 38 (103)
T PF04455_consen 1 MFSREVELEGHLIDSGILNRVLDIIMDMGGDFEILEFD 38 (103)
T ss_dssp -EEEEEEEEE--TTSSHHHHHHHHHHHTT-EEEEEEEE
T ss_pred CccEEEEEEEeeechhhHHHHHHHHHhcCCCEEEEEEE
Confidence 34556677778889999999999999888 6666555
No 48
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.03 E-value=78 Score=25.00 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=29.9
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHH
Q 032047 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRP 43 (148)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~ 43 (148)
+.+.++.|-...- -...++.|..+||.|+..+-+-++.+
T Consensus 119 ~ri~vlTPY~~ev--n~~e~ef~~~~Gfeiv~~~~Lgi~dn 157 (238)
T COG3473 119 QRISVLTPYIDEV--NQREIEFLEANGFEIVDFKGLGITDN 157 (238)
T ss_pred ceEEEeccchhhh--hhHHHHHHHhCCeEEEEeeccCCccc
Confidence 4678899987664 35788999999999998876655543
No 49
>KOG2475 consensus CDC45 (cell division cycle 45)-like protein [Replication, recombination and repair]
Probab=23.62 E-value=5.4e+02 Score=23.14 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=64.8
Q ss_pred EcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecChhhhHHhH
Q 032047 8 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTI 87 (148)
Q Consensus 8 IKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~nav~~~r~l 87 (148)
+-+||+. +-+||+-|.+..+.--.+..+ ..-.+.++.|.+++ +++.-++|.+-.+...+..+
T Consensus 32 ~DiDALC---A~kiLt~Llk~D~iqysivPV-sG~~elek~~~e~~--------------e~~~~iiLiNcG~~vDL~~~ 93 (587)
T KOG2475|consen 32 LDIDALC---ATKILTHLLKCDHIQYSIVPV-SGWSELEKAFLELQ--------------EQIKYIILINCGATVDLTRL 93 (587)
T ss_pred cChhHHH---HHHHHHHHHhccccceeEEEe-cchHHHHHHHHhhc--------------cCceEEEEecCCcchhHHHH
Confidence 5678888 569999999888765555554 35566777777775 45666777777777778878
Q ss_pred hCC-CCCC-----CCCCCChhcccccCCCCcEEEeCCCHH
Q 032047 88 IGA-TNPA-----QSAPGTIRGDLAIVTGRNIIHGSDSVE 121 (148)
Q Consensus 88 ~Gp-~~p~-----~a~p~slR~~~g~~~~~N~vh~Sds~~ 121 (148)
.-| ..-. ...|-.|-..|+.+...=..|++++.+
T Consensus 94 L~~P~e~~~fViDSHRP~nl~Niy~~~qi~~l~d~d~ee~ 133 (587)
T KOG2475|consen 94 LQPPSEDVIFVIDSHRPFNLENIYEDNQIHLLDDGDDEEQ 133 (587)
T ss_pred hCCcccceEEEEeCCCCcchhhcccCceEEEecCCChhhh
Confidence 774 2220 138989998988665544555554433
No 50
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=23.16 E-value=91 Score=25.91 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=37.2
Q ss_pred EEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcC
Q 032047 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (148)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~ 54 (148)
+|-|..+-.|+++.|-+.|.+.||.=+. .+.-+...|..||+..++
T Consensus 166 ivAPSdMMDGrV~aIR~aLd~ag~~~v~--IMsYsaKyASafYGPFRd 211 (330)
T COG0113 166 IVAPSDMMDGRVGAIREALDEAGFIDVP--IMSYSAKYASAFYGPFRD 211 (330)
T ss_pred eecccccccchHHHHHHHHHHcCCCcce--eeehhHHHhhhccccHHH
Confidence 6778888888999999999999997544 456678888999988663
No 51
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.31 E-value=1.7e+02 Score=17.91 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=26.0
Q ss_pred EEEcCcccccCchHHHHHHHHHcCCcccceEEee
Q 032047 6 IMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT 39 (148)
Q Consensus 6 ~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~ 39 (148)
-+.-|| +.|.+.+|-+.|.+.|+.|...++..
T Consensus 3 ~v~g~D--~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 3 TLSCPD--RPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred EEEcCC--CCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 455666 45678899999999999999998875
No 52
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=22.06 E-value=1.7e+02 Score=23.25 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=36.2
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhc
Q 032047 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (148)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~ 53 (148)
.+.|--|+..+ .++.....++|-.|..-|-+.+|.++++++....+
T Consensus 70 ~V~Iatp~~~H----~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~ 115 (342)
T COG0673 70 AVYIATPNALH----AELALAALEAGKHVLCEKPLALTLEEAEELVELAR 115 (342)
T ss_pred EEEEcCCChhh----HHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHH
Confidence 35566677665 36667777899999999999999999998876543
No 53
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=21.74 E-value=80 Score=25.91 Aligned_cols=45 Identities=22% Similarity=0.484 Sum_probs=37.3
Q ss_pred EEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhc
Q 032047 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (148)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~ 53 (148)
++-|.-+-.|+++.|-+.|...||. ++-.+.-+...+..||+..+
T Consensus 174 vVapSDmmDgRV~aIk~aL~~~~l~--~vsvmSYsaKfas~fyGpFR 218 (340)
T KOG2794|consen 174 VVAPSDMMDGRVGAIKQALDAEGLQ--KVSVMSYSAKFASSFYGPFR 218 (340)
T ss_pred eecchHhhcchHHHHHHHHHHhccc--ceEEEeehhhhhhccccchH
Confidence 4556666667899999999999999 77888889999999998765
No 54
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=21.59 E-value=1.8e+02 Score=16.74 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=27.9
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCH
Q 032047 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDR 42 (148)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~ 42 (148)
++.+.=|| ..|.+.+|.+.|.+.|+.|..+.......
T Consensus 2 ~v~v~~~d--rpG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 2 RVRVIVPD--RPGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEET--STTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred EEEEEcCC--CCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 34455556 35678899999999999999998876443
No 55
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=21.34 E-value=4.3e+02 Score=21.24 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=24.8
Q ss_pred EEEEEEcCcc-cccCchHHHHHHHHHcCCcccceEEeecCHHHH
Q 032047 3 QTFIMIKPDG-VQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFA 45 (148)
Q Consensus 3 ~tl~lIKPda-~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a 45 (148)
+++++|-+|. +-......+-+.+++.|++|+..-.+.....+.
T Consensus 135 k~v~~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~ 178 (359)
T TIGR03407 135 KRFFLLGSDYVFPRTANKIIKAYLKSLGGTVVGEDYTPLGHTDF 178 (359)
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHcCCEEEeeEEecCChHhH
Confidence 5677777663 222222234466678888888766665544443
No 56
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=20.67 E-value=4e+02 Score=20.97 Aligned_cols=73 Identities=19% Similarity=0.145 Sum_probs=37.6
Q ss_pred EEEEEcCcc-cccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCC-EEEEEEeecChh
Q 032047 4 TFIMIKPDG-VQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGP-VVAMIWEGEGVV 81 (148)
Q Consensus 4 tl~lIKPda-~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp-~v~l~l~g~nav 81 (148)
.+++|-+|- +.+.....+-+.+.+.|++|+....+..+..+.... +.+...++| ++.+...+.+++
T Consensus 134 ~v~il~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~------------v~~~~~~~~d~v~~~~~~~~~~ 201 (333)
T cd06331 134 RFYLIGSDYVWPRESNRIARALLEELGGEVVGEEYLPLGTSDFGSV------------IEKIKAAGPDVVLSTLVGDSNV 201 (333)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHcCCEEEEEEEecCCcccHHHH------------HHHHHHcCCCEEEEecCCCChH
Confidence 456666553 223334455566677788887766665543322222 222334555 333334556666
Q ss_pred hhHHhHh
Q 032047 82 KTGRTII 88 (148)
Q Consensus 82 ~~~r~l~ 88 (148)
.-++++.
T Consensus 202 ~~~~~~~ 208 (333)
T cd06331 202 AFYRQFA 208 (333)
T ss_pred HHHHHHH
Confidence 6666544
No 57
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=20.23 E-value=1.7e+02 Score=18.25 Aligned_cols=35 Identities=11% Similarity=0.317 Sum_probs=27.6
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCcccceEEeecC
Q 032047 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVD 41 (148)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~ 41 (148)
+-++=|| ..|.+-.|=+.|.++|+.|...++..++
T Consensus 4 ltv~g~D--r~GiVa~vs~~la~~g~nI~d~~q~~~~ 38 (77)
T cd04893 4 ISALGTD--RPGILNELTRAVSESGCNILDSRMAILG 38 (77)
T ss_pred EEEEeCC--CChHHHHHHHHHHHcCCCEEEceeeEEc
Confidence 4456677 4667888889999999999999998733
Done!