Query 032047
Match_columns 148
No_of_seqs 114 out of 1029
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 14:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8u_A Nucleoside diphosphate 100.0 1.6E-56 5.5E-61 330.4 13.2 148 1-148 1-149 (157)
2 1u8w_A Nucleoside diphosphate 100.0 6.1E-56 2.1E-60 325.3 14.2 148 1-148 1-148 (149)
3 1pku_A Nucleoside diphosphate 100.0 6.3E-56 2.1E-60 325.5 12.7 148 1-148 2-149 (150)
4 4fkx_A NDK B, nucleoside dipho 100.0 6E-56 2E-60 328.2 12.6 148 1-148 11-159 (161)
5 3r9l_A Nucleoside diphosphate 100.0 4.6E-56 1.6E-60 327.5 10.0 148 1-148 7-155 (155)
6 3l7u_A Nucleoside diphosphate 100.0 1.4E-55 4.8E-60 329.1 12.4 148 1-148 24-172 (172)
7 3fkb_A NDP kinase, NDK, nucleo 100.0 2.9E-55 1E-59 323.2 13.9 147 1-148 8-155 (155)
8 1xiq_A Nucleoside diphosphate 100.0 2.7E-55 9.2E-60 324.0 13.5 148 1-148 9-157 (157)
9 3mpd_A Nucleoside diphosphate 100.0 2.6E-55 8.9E-60 322.4 13.3 145 1-147 5-151 (151)
10 2vu5_A Nucleoside diphosphate 100.0 3.3E-55 1.1E-59 321.1 13.1 147 1-147 1-148 (148)
11 1nb2_A Nucleoside diphosphate 100.0 2.5E-55 8.4E-60 322.4 11.8 148 1-148 2-150 (150)
12 1s57_A Nucleoside diphosphate 100.0 8.1E-55 2.8E-59 320.6 13.8 148 1-148 5-153 (153)
13 4hr2_A Nucleoside diphosphate 100.0 1E-54 3.5E-59 317.0 13.2 133 1-133 7-139 (145)
14 3bbb_A Nucleoside diphosphate 100.0 7.8E-55 2.7E-59 320.0 12.6 148 1-148 3-151 (151)
15 3js9_A Nucleoside diphosphate 100.0 1.2E-54 4.1E-59 320.1 13.3 147 1-147 9-156 (156)
16 3b54_A NDK, NDP kinase, nucleo 100.0 1.4E-54 4.8E-59 321.3 10.9 148 1-148 13-161 (161)
17 1zs6_A Nucleoside diphosphate 100.0 3.4E-54 1.2E-58 321.4 11.7 148 1-148 21-169 (169)
18 2dxe_A Nucleoside diphosphate 100.0 5.4E-54 1.9E-58 318.1 12.6 146 2-148 8-157 (160)
19 2az3_A Nucleoside diphosphate 100.0 8E-54 2.7E-58 318.1 12.7 148 1-148 8-158 (164)
20 1w7w_A Nucleoside diphosphate 100.0 6E-54 2.1E-58 323.2 12.2 148 1-148 32-180 (182)
21 2hur_A NDK, nucleoside diphosp 100.0 2.3E-53 7.8E-58 309.5 14.1 139 1-139 2-141 (142)
22 1nhk_R Nucleoside diphosphate 100.0 2E-53 6.7E-58 310.4 13.2 140 1-140 2-142 (144)
23 4dz6_A Nucleoside diphosphate 100.0 6.8E-54 2.3E-58 324.4 9.8 148 1-148 26-189 (190)
24 3evo_A NDP kinase, NDK, nucleo 100.0 5.2E-53 1.8E-57 308.6 14.1 134 1-134 6-140 (146)
25 1k44_A Nucleoside diphosphate 100.0 8.9E-53 3E-57 304.5 14.2 134 1-134 2-136 (136)
26 1wkj_A Nucleoside diphosphate 100.0 7.7E-53 2.6E-57 305.1 13.5 133 1-133 1-133 (137)
27 3ztp_A Nucleoside diphosphate 100.0 2.7E-53 9.2E-58 309.1 10.8 133 1-133 3-138 (142)
28 1ehw_A NDPK H4, nucleoside dip 100.0 2.1E-52 7.1E-57 309.8 13.1 138 1-138 24-162 (162)
29 1xqi_A Nucleoside diphosphate 100.0 3E-48 1E-52 295.2 9.4 133 1-133 15-190 (195)
30 3bh7_B Protein XRP2; protein-p 100.0 1.1E-34 3.9E-39 237.4 9.2 111 1-133 235-345 (352)
31 3p04_A Uncharacterized BCR; SE 78.1 1.8 6.1E-05 28.1 3.0 45 3-51 5-49 (87)
32 3i5g_C Myosin catalytic light 29.5 40 0.0014 22.9 2.9 32 39-70 117-154 (159)
33 1lc0_A Biliverdin reductase A; 26.6 68 0.0023 24.3 4.0 64 4-71 68-144 (294)
34 4fb5_A Probable oxidoreductase 25.6 54 0.0018 25.2 3.4 46 4-53 97-142 (393)
35 1gtd_A MTH169; synthetase, FGA 23.2 1.4E+02 0.0046 18.5 4.4 33 3-37 6-39 (85)
36 2dgb_A Hypothetical protein PU 22.8 1.4E+02 0.0049 18.4 4.6 34 3-38 7-41 (84)
37 3dty_A Oxidoreductase, GFO/IDH 22.8 76 0.0026 25.0 3.8 45 4-52 88-132 (398)
38 1r57_A Conserved hypothetical 21.4 1.2E+02 0.0042 18.3 3.9 46 5-52 40-85 (102)
39 2ho3_A Oxidoreductase, GFO/IDH 21.2 1.6E+02 0.0056 22.1 5.3 66 5-74 66-144 (325)
40 3gy9_A GCN5-related N-acetyltr 20.9 33 0.0011 21.9 1.1 46 5-52 81-126 (150)
41 1jg5_A GTP cyclohydrolase I fe 20.4 61 0.0021 20.5 2.1 21 18-38 52-72 (83)
No 1
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=1.6e-56 Score=330.39 Aligned_cols=148 Identities=55% Similarity=0.972 Sum_probs=145.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
||+||+|||||++.+|++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 80 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA 80 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|++||+++|||+|..|.|+|||++||.+..+|+||||||+++|.+|+++|||+ .+++|...++.|+|+
T Consensus 81 V~~~R~l~GpTdp~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 149 (157)
T 3q8u_A 81 VNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149 (157)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGCCCCCCTTHHHHCC
T ss_pred HHHHHHHcCCCChhhcCCCChHHHhCCCCCCeeEEeCCCHHHHHHHHHHcCChHhhcccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 699999999999996
No 2
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=6.1e-56 Score=325.30 Aligned_cols=148 Identities=81% Similarity=1.368 Sum_probs=146.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
||+||+|||||++.+|++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV 80 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCCCCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~~~~~~~~~~~~~~~~ 148 (148)
|+.||+++|||+|..|.|+|||+.||.+..+|+||||||+++|.+|+++|||+.+++|....+.|+|+
T Consensus 81 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~e~~~~~~~~~~~~~~ 148 (149)
T 1u8w_A 81 VLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGPVNWQSSVHPWVYE 148 (149)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEECSSHHHHHHHHHHHCTTCCCCCCCTTGGGTSC
T ss_pred hHHHHHHhCCCCcccCCCCCcHHHHCCCCcCceEEecCCHHHHHHHHHHhCchhhccccccchhhhhc
Confidence 99999999999999999999999999999999999999999999999999988999999999999996
No 3
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=6.3e-56 Score=325.55 Aligned_cols=148 Identities=70% Similarity=1.263 Sum_probs=145.7
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 81 (150)
T 1pku_A 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDV 81 (150)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTH
T ss_pred ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCCCCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~~~~~~~~~~~~~~~~ 148 (148)
|+.||+++|||+|..|.|+|||+.||.+..+|+||||||+++|.+|+++|||+.+++|....+.|+|+
T Consensus 82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~e~~~~~~~~~~~~~~ 149 (150)
T 1pku_A 82 VATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPEGLAEWRSNLHPWIYE 149 (150)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCSBTTBCSEEECSSHHHHHHHHHHHCTTCCCCCCCTTHHHHCC
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhCcHHhccccccchhhhhc
Confidence 99999999999999999999999999999999999999999999999999988999999999999996
No 4
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=6e-56 Score=328.19 Aligned_cols=148 Identities=60% Similarity=1.037 Sum_probs=144.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
.|+||+|||||++.+|++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 11 ~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~na 90 (161)
T 4fkx_A 11 SERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLGV 90 (161)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEeccCh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|+.||+++|||+|..|.|+|||++||.+..+|+||||||+++|.|||++||++ .+++|...++.|+|+
T Consensus 91 V~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~ye 159 (161)
T 4fkx_A 91 VKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVESAKREIAFWFKAEELVSWTSHSVKQIYE 159 (161)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCS
T ss_pred HHHHHHHhcCCChhhcCCCChhHhhCCCccceeEEeCCCHHHHHHHHHHcCChhhcccccccchhheec
Confidence 99999999999999999999999999999999999999999999999999976 699999999999996
No 5
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=4.6e-56 Score=327.47 Aligned_cols=148 Identities=54% Similarity=1.020 Sum_probs=106.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 7 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 86 (155)
T 3r9l_A 7 RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGANV 86 (155)
T ss_dssp SCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEEESTTH
T ss_pred hheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|+.||+++|||+|..|.|+|||++||.+..+|+||||||+++|.|||++||++ .+++|...++.|+|+
T Consensus 87 V~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 155 (155)
T 3r9l_A 87 VSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLDDAAREIALWFKPEEVASWSCSLESHIYE 155 (155)
T ss_dssp HHHHHHHHCCSCTTTCCTTSHHHHHCCSSTTCCEEECSSHHHHHHHHHHHCCSTTCC------------
T ss_pred HHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChHhccccccchhhhhcC
Confidence 99999999999999999999999999999999999999999999999999976 699999999999996
No 6
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-55 Score=329.11 Aligned_cols=148 Identities=64% Similarity=1.101 Sum_probs=145.2
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 24 ~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 103 (172)
T 3l7u_A 24 CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNV 103 (172)
T ss_dssp GCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEESTTH
T ss_pred hceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEeCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|+.||+++|||+|..|.|+|||++||.+..+|+||||||+++|.+||++|||+ .+++|...++.|+|+
T Consensus 104 V~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~VHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~ye 172 (172)
T 3l7u_A 104 VKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 172 (172)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCCGGGCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCC
T ss_pred HHHHHHHcCCCChhhcCCCChhHHhcCCCCCcEEEeCCCHHHHHHHHHHcCChhhccccccchhhhhcC
Confidence 99999999999999999999999999999999999999999999999999987 699999999999996
No 7
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=2.9e-55 Score=323.17 Aligned_cols=147 Identities=58% Similarity=0.984 Sum_probs=142.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 8 ~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 87 (155)
T 3fkb_A 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGV 87 (155)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|+.||+++||++|..|.|+|||++||.+..+|+||||||+++|.|||++||++ .+++|...+ .|+|+
T Consensus 88 V~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~-~~~~~ 155 (155)
T 3fkb_A 88 VASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKPEELLTEVKPN-PNLYE 155 (155)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCSCCCCC-TTSCC
T ss_pred HHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhcccccccc-hhhcC
Confidence 99999999999999999999999999999999999999999999999999976 699999887 48886
No 8
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=2.7e-55 Score=323.99 Aligned_cols=148 Identities=54% Similarity=1.013 Sum_probs=145.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
||+||+|||||++.+|++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 9 ~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~na 88 (157)
T 1xiq_A 9 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVDM 88 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEESTTH
T ss_pred hheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|+.||+++|||+|..|.|+|||+.||.+..+|+||||||+++|.+|+++|||+ ++++|....+.|+|+
T Consensus 89 V~~~R~l~G~T~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 157 (157)
T 1xiq_A 89 VKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVASANKEINIWFKAEELTQWKHHMKEWICS 157 (157)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCCCCCGGGGGTCC
T ss_pred hHHHHHHcCCCCCCcCCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHhCCccccccccccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999987 699999999999996
No 9
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=2.6e-55 Score=322.36 Aligned_cols=145 Identities=51% Similarity=0.889 Sum_probs=140.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 5 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 84 (151)
T 3mpd_A 5 MERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKDA 84 (151)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred eEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCCcH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCC--CCCcccccCCCCccc
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP--DGPINWQSSLHPWIY 147 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~--~~~~~~~~~~~~~~~ 147 (148)
|+.||+++|||+|..|.|+|||++||.+..+|+||||||+++|.||+++||+ +.+++| ..+.|+|
T Consensus 85 V~~~R~l~G~t~p~~a~PgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~~e~~~~--~~~~~~~ 151 (151)
T 3mpd_A 85 VSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDVQPVSF--FDKEWIY 151 (151)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCSSTTCSEEECSSHHHHHHHHHHHTCSCCCCCCC--TTHHHHC
T ss_pred HHHHHHHhCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHhCCCcchheee--ccccccC
Confidence 9999999999999999999999999999999999999999999999999997 469999 7777876
No 10
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=3.3e-55 Score=321.14 Aligned_cols=147 Identities=55% Similarity=1.060 Sum_probs=144.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGV 80 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTH
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCccc
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIY 147 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~ 147 (148)
|+.||+++|||+|..+.|+|||+.||.+..+|+||||||+++|.+|+++||++ .+.+|....+.|+|
T Consensus 81 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~ 148 (148)
T 2vu5_A 81 VDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148 (148)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHCCGGGSCCCCCGGGGGTC
T ss_pred HHHHHHHhCCCCccccCCCChHHHhcCCcccceEEeCCCHHHHHHHHHHhCCchhccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999986 69999999999987
No 11
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=2.5e-55 Score=322.38 Aligned_cols=148 Identities=52% Similarity=0.860 Sum_probs=145.2
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~na 81 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNA 81 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTH
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|+.||+++|||+|..+.|+|||+.||.+..+|+||||||+++|.+|+++||++ .+.+|....+.|+|+
T Consensus 82 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 150 (150)
T 1nb2_A 82 AATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFFGGGEAASGTPAAAADIYG 150 (150)
T ss_dssp HHHHHHHHCCSSTTSSCTTSHHHHSCSCSSSCSEEECSSHHHHHHHHHHHSCSSSSCCCCCTTGGGTCC
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhcCCccceeEEeCCCHHHHHHHHHHhCCccccccccccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999986 699999999999996
No 12
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=8.1e-55 Score=320.57 Aligned_cols=148 Identities=62% Similarity=1.110 Sum_probs=145.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.+|++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 5 ~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~a 84 (153)
T 1s57_A 5 VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGV 84 (153)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETTH
T ss_pred cceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEecccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|+.||+++|||+|..|.|+|||+.||.+..+|+||||||+++|.+|+++|||+ .+++|....+.|+|+
T Consensus 85 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 153 (153)
T 1s57_A 85 VASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 153 (153)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHSCTTCCCCCCCTTHHHHCC
T ss_pred HHHHHHHhCCCCccccCCcchHHHhcCCCcCceEEcCCCHHHHHHHHHHhCCchhcccccccchhhhhC
Confidence 99999999999999999999999999999999999999999999999999986 699999999999996
No 13
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=1e-54 Score=317.01 Aligned_cols=133 Identities=40% Similarity=0.747 Sum_probs=131.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 7 ~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 86 (145)
T 4hr2_A 7 LERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGEDA 86 (145)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred HHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEEcCCc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 133 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~ 133 (148)
|+.||+++|||+|..|.|+|||++||.+..+|+||||||+++|.+|+++|||+
T Consensus 87 V~~~R~l~G~tdp~~A~pgtIR~~fg~~~~~N~vHgSDs~e~A~rEi~~fF~~ 139 (145)
T 4hr2_A 87 ILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPE 139 (145)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCSBTTBCSEEECCSHHHHHHHHHHHCCG
T ss_pred HhHHhhccCCCCcccCCCCCcHHHhcCCcCccceECCCCHHHHHHHHHHhCCh
Confidence 99999999999999999999999999999999999999999999999999997
No 14
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=7.8e-55 Score=320.03 Aligned_cols=148 Identities=61% Similarity=1.091 Sum_probs=144.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++|++++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 3 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~a 82 (151)
T 3bbb_A 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNV 82 (151)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|+.||+++|||+|..|.|+|||+.||.+..+|+||||||+++|.+|+++||++ ++.+|...++.|+|+
T Consensus 83 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 151 (151)
T 3bbb_A 83 VKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 151 (151)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCC
T ss_pred HHHHHHHhCCCCcccCCCCCcHHHhcCCcccceEEecCCHHHHHHHHHHhCChhhcccccccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999986 599999999999996
No 15
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=1.2e-54 Score=320.05 Aligned_cols=147 Identities=49% Similarity=0.918 Sum_probs=144.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
||||++|||||++.+|++|+||++|+++||.|+++||++||+++|++||.++++++||++|++||+||||++|+|+|+||
T Consensus 9 ~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg~na 88 (156)
T 3js9_A 9 MERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEGPEA 88 (156)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEETTH
T ss_pred hhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEeccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCccc
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIY 147 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~ 147 (148)
|++||+++|||+|..|.|+|||+.||.+..+|+||||||+++|.|||++||++ .+++|....+.|+|
T Consensus 89 V~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~~ 156 (156)
T 3js9_A 89 IKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSAEDAARECALWFTPEQLVTWERSVGGWIY 156 (156)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHSCGGGCCCCCCTTGGGTC
T ss_pred HHHHHHhcCCCCccccCCCCHHHHhCCCCCceeEEcCCCHHHHHHHHHHcCChhhcccccccchhhcC
Confidence 99999999999999999999999999999999999999999999999999976 69999999999998
No 16
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-54 Score=321.30 Aligned_cols=148 Identities=55% Similarity=1.043 Sum_probs=138.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
.|+||+|||||++.+|++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 13 ~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~na 92 (161)
T 3b54_A 13 TERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDV 92 (161)
T ss_dssp CCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEEESTTH
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEEeccCh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|+.||+++|||+|..|.|+|||+.||.+..+|+||||||+++|.+|+++|||+ .+.+|....+.|+|+
T Consensus 93 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 161 (161)
T 3b54_A 93 VRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEELVDWESNQAKWIYE 161 (161)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHSCSTTCCCCCCTTHHHHCC
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhcCCCCCceEEeCCCHHHHHHHHHHhCCchhcccccccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999986 699999999999996
No 17
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=3.4e-54 Score=321.44 Aligned_cols=148 Identities=57% Similarity=1.065 Sum_probs=145.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.+|++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 21 ~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~a 100 (169)
T 1zs6_A 21 HERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDV 100 (169)
T ss_dssp GCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred hccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|+.||+++||++|..|.|+|||+.||.+..+|+||||||+++|.+|+++||++ ++.+|....+.|+|+
T Consensus 101 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 169 (169)
T 1zs6_A 101 VRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169 (169)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCSEEECSSHHHHHHHHHHHSCGGGSCCCCCTTHHHHCC
T ss_pred hHHHHHHhCCCCcccCCCCChHHHHcCCCcCceEEecCCHHHHHHHHHHhCCchhhhcccccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999986 699999999999996
No 18
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=5.4e-54 Score=318.12 Aligned_cols=146 Identities=51% Similarity=0.897 Sum_probs=142.9
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecChh
Q 032047 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (148)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~nav 81 (148)
|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+|||
T Consensus 8 erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV 87 (160)
T 2dxe_A 8 ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAV 87 (160)
T ss_dssp EEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHH
T ss_pred CeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHhCCCCCCCCCCCChhcccccCCCC---cEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGR---NIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~---N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
+.||+++|||+|..|.|+|||+.||.+..+ |+||||||+++|.+|+++|||+ ++.+| ..++.|+|+
T Consensus 88 ~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~-~~~~~~~~~ 157 (160)
T 2dxe_A 88 EVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEY-PRAADWFYK 157 (160)
T ss_dssp HHHHHHHCCSSGGGSCTTSHHHHHCCCCSSSCCCSEEECSSHHHHHHHHHHHCCGGGCCCC-CCTTHHHHC
T ss_pred HHHHHHhCCCCCCcCCCCChHHHhcCCcccCcCceEEcCCCHHHHHHHHHHhCCchhhccc-cchhhhHhc
Confidence 999999999999999999999999999999 9999999999999999999986 69999 999999986
No 19
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=8e-54 Score=318.11 Aligned_cols=148 Identities=48% Similarity=0.949 Sum_probs=145.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 8 ~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~a 87 (164)
T 2az3_A 8 DERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGADA 87 (164)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEccccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHH--HHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE--SAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~--~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|+.||+++|||+|..+.|+|||+.||.+..+|+||||||++ +|.+|+++|||+ .+.+|....+.|+|+
T Consensus 88 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~e~gsA~rEi~~fF~~~e~~~~~~~~~~~~~~ 158 (164)
T 2az3_A 88 TRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDELVDWDRDASAWVYE 158 (164)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCCSSSCSEEECCTTSTTHHHHHHHHHCCTTSSCCCCCTTHHHHCC
T ss_pred HHHHHHHhCCCCccccCCCcchhhhcccccCceEEecCCcchhhHHHHHHHcCCchhhcccccchHHHHHh
Confidence 99999999999999999999999999999999999999999 999999999986 699999999999996
No 20
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=6e-54 Score=323.17 Aligned_cols=148 Identities=59% Similarity=1.105 Sum_probs=144.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.+|++|+||++|+++||+|+++||++||+++|++||.+|++++||++|+++|+||||++|+|+|+||
T Consensus 32 ~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvleG~na 111 (182)
T 1w7w_A 32 LERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEGV 111 (182)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred hceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEecccH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 148 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~ 148 (148)
|+.||+++|||+|..|.|+|||+.||.+..+|+||||||+++|.+||++||++ .+.+|....+.|+|+
T Consensus 112 V~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 180 (182)
T 1w7w_A 112 ITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVSFTSNSEKWIYG 180 (182)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHCCGGGCCCCCCTTHHHHTC
T ss_pred HHHHHHHhCCCCCCCCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhCCchhccccccccccceec
Confidence 99999999999999999999999999999999999999999999999999976 699999999999986
No 21
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=2.3e-53 Score=309.49 Aligned_cols=139 Identities=42% Similarity=0.721 Sum_probs=135.6
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENA 81 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccc
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQ 139 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~ 139 (148)
|+.||+++|||+|..|.|+|||+.||.+..+|+||||||+++|.+|+++|||+ .+++|.
T Consensus 82 V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~ 141 (142)
T 2hur_A 82 VQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRT 141 (142)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCSSSTTCSEEECSSHHHHHHHHHHHCCTTCSCCCC
T ss_pred HHHHHHHhCCCCcccCCCCcchHHhCCCcccceEEeCCCHHHHHHHHHHhCCchhhhccC
Confidence 99999999999999999999999999999999999999999999999999987 588884
No 22
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=2e-53 Score=310.38 Aligned_cols=140 Identities=44% Similarity=0.770 Sum_probs=136.4
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.+|++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENA 81 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCccccc
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQS 140 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~ 140 (148)
|+.||+++|||+|..|.|+|||+.||.+..+|+||||||+++|.+|+++||++ ++++|..
T Consensus 82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~ 142 (144)
T 1nhk_R 82 VLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEIHSYPY 142 (144)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCSSSSCSEEECSSHHHHHHHHHHHCCGGGCCCCCC
T ss_pred HHHHHHHhCCCCCCcCCCCcchHHhCCCCcceeEEeCCCHHHHHHHHHHhCCchhhccccc
Confidence 99999999999999999999999999999999999999999999999999986 6888864
No 23
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=6.8e-54 Score=324.45 Aligned_cols=148 Identities=36% Similarity=0.673 Sum_probs=144.6
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHH-----HhcCCCChhhHHHhhhcCCEEEEEE
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYE-----DLSSKPFFGSLIEYITSGPVVAMIW 75 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~-----~~~~~~~~~~l~~~~~sgp~v~l~l 75 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||. +|++++||++|++||+||||++|+|
T Consensus 26 ~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvvamvl 105 (190)
T 4dz6_A 26 LQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTFVV 105 (190)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEEEEE
T ss_pred hhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred eecChhhhHHhHhCCCCCCCCCCCChhcccccCC----------CCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCC
Q 032047 76 EGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVT----------GRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHP 144 (148)
Q Consensus 76 ~g~nav~~~r~l~Gp~~p~~a~p~slR~~~g~~~----------~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~ 144 (148)
+|+|||++||+++|||+|..|.|+|||++||.+. .+|+||||||+++|.|||++|||+ .+++|...++.
T Consensus 106 eG~naV~~~R~l~GpTdP~~A~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~esA~rEI~~fF~~~e~~~~~~~~~~ 185 (190)
T 4dz6_A 106 EGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMREIPIWFKDNEILNYKRDDEC 185 (190)
T ss_dssp EEETHHHHHHHHHCCSSGGGSCTTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHHHHHHHHHHHCCGGGSCCCCCTTHH
T ss_pred ecCCHHHHHHHHcCCCChhhcCCCChHHHhcCChhhhccccccccceeEEcCCCHHHHHHHHHHcCCcHHhccccccchh
Confidence 9999999999999999999999999999999999 999999999999999999999987 69999999999
Q ss_pred cccC
Q 032047 145 WIYE 148 (148)
Q Consensus 145 ~~~~ 148 (148)
|+|.
T Consensus 186 ~~y~ 189 (190)
T 4dz6_A 186 EHYY 189 (190)
T ss_dssp HHTC
T ss_pred heec
Confidence 9984
No 24
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=5.2e-53 Score=308.58 Aligned_cols=134 Identities=42% Similarity=0.788 Sum_probs=130.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeec-CHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecC
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTV-DRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 79 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l-~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~n 79 (148)
+|+||+|||||++.++++|+||++|+++||.|+++||++| |+++|++||.+|++++||++|++||+||||++|+|+|+|
T Consensus 6 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~n 85 (146)
T 3evo_A 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTD 85 (146)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEETT
T ss_pred ceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeCCC
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hhhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCCC
Q 032047 80 VVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDG 134 (148)
Q Consensus 80 av~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~~ 134 (148)
||+.||+++|||+|..|.|+|||++||.+..+|+||||||+++|.+||++|||+.
T Consensus 86 aV~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~ 140 (146)
T 3evo_A 86 AISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPET 140 (146)
T ss_dssp HHHHHHHHHCCSSTTTCCTTSHHHHHCCSSSCCSEEECCSHHHHHHHHHHHCC--
T ss_pred HHHHHHHHcCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHcCChh
Confidence 9999999999999999999999999999999999999999999999999999974
No 25
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=8.9e-53 Score=304.45 Aligned_cols=134 Identities=55% Similarity=0.957 Sum_probs=131.6
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRA 81 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTH
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCC-CCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCCC
Q 032047 81 VKTGRTIIGATNPA-QSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDG 134 (148)
Q Consensus 81 v~~~r~l~Gp~~p~-~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~~ 134 (148)
|+.||+++|||+|. .|.|+|||++||.+..+|+||||||+++|.+|+++|||++
T Consensus 82 V~~~R~l~G~t~p~~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~ 136 (136)
T 1k44_A 82 IAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFPGA 136 (136)
T ss_dssp HHHHHHHHCCSSTTTTSCTTSHHHHHCCCSTTCCEEECSSHHHHHHHHHHHSSCC
T ss_pred HHHHHHHhCCCCccccCCCCCcHHHhcCCccceEEEeCCCHHHHHHHHHHhCCCC
Confidence 99999999999999 9999999999999999999999999999999999999863
No 26
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=7.7e-53 Score=305.14 Aligned_cols=133 Identities=58% Similarity=1.011 Sum_probs=131.4
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~a 80 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGV 80 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 133 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~ 133 (148)
|+.||+++|||+|..|.|+|||++||.+..+|+||||||+++|.+|+++|||+
T Consensus 81 V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~ 133 (137)
T 1wkj_A 81 VAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRP 133 (137)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHSCG
T ss_pred HHHHHHHhCCCCCCcCCCCcchHHhCCCcccceEEecCCHHHHHHHHHHhCCh
Confidence 99999999999999999999999999999999999999999999999999986
No 27
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=2.7e-53 Score=309.10 Aligned_cols=133 Identities=42% Similarity=0.735 Sum_probs=131.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~na 82 (142)
T 3ztp_A 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGEDA 82 (142)
T ss_dssp EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCC---CCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC
Q 032047 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 133 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~ 133 (148)
|+.||+++|||+|..| .|+|||++||.+..+|+||||||+++|.+|+++|||+
T Consensus 83 V~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~ 138 (142)
T 3ztp_A 83 IKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYEICFIFSG 138 (142)
T ss_dssp HHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHHHHHHHHHHHCCG
T ss_pred HHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHcCCc
Confidence 9999999999999998 9999999999999999999999999999999999986
No 28
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=2.1e-52 Score=309.81 Aligned_cols=138 Identities=53% Similarity=1.016 Sum_probs=134.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 24 ~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~na 103 (162)
T 1ehw_A 24 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNV 103 (162)
T ss_dssp GCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred hceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEechhH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCccc
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINW 138 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~ 138 (148)
|+.||+++|||+|..|.|+|||++||.+..+|+||||||+++|.+||++||++ ++++|
T Consensus 104 V~~~R~l~G~T~p~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~ 162 (162)
T 1ehw_A 104 VRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSW 162 (162)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCCSSCCSEEECSSHHHHHHHHHHHCCGGGCCCC
T ss_pred HHHHHHHhCCCCCCCCCCCChHHHhCCCCCCeEEEECCCHHHHHHHHHHhCChhhcccC
Confidence 99999999999999999999999999999999999999999999999999975 67776
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=3e-48 Score=295.16 Aligned_cols=133 Identities=40% Similarity=0.718 Sum_probs=129.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHH-------------H-----------------
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHY-------------E----------------- 50 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y-------------~----------------- 50 (148)
+|+||+|||||++.++++|+||++|++.||.|+++||+++|+++|++|| .
T Consensus 15 ~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 94 (195)
T 1xqi_A 15 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGT 94 (195)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHSC
T ss_pred hhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhcc
Confidence 4899999999999999999999999999999999999999999999999 7
Q ss_pred ---HhcCCCChhhHHHhhhcCCEEEEEEeecChhhhHHhHhCCCCCCCCCCCChhcccccCCCC----------cEEEeC
Q 032047 51 ---DLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR----------NIIHGS 117 (148)
Q Consensus 51 ---~~~~~~~~~~l~~~~~sgp~v~l~l~g~nav~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~----------N~vh~S 117 (148)
+|.+++||+.|++||+||||++|+|+|+|||++||+++|||+|..|.|+|||+.||.+..+ |+||||
T Consensus 95 ~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~pgTIRg~fg~~~~~~~~~~~~~~~N~vHgS 174 (195)
T 1xqi_A 95 DDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHAS 174 (195)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSCTTSHHHHHCCCCHHHHHHTTSCCCCSEEEC
T ss_pred ccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcCCCCchhHhhcCchhhhccccccccceEEEcC
Confidence 8899999999999999999999999999999999999999999999999999999999888 999999
Q ss_pred CCHHHHHHHHhhcCCC
Q 032047 118 DSVESAQKEIALWFPD 133 (148)
Q Consensus 118 ds~~~a~~e~~~fF~~ 133 (148)
||+++|.||+++||++
T Consensus 175 DS~esA~rEi~~~F~~ 190 (195)
T 1xqi_A 175 DSPSEAEREIRFWFRE 190 (195)
T ss_dssp SSHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHhCCh
Confidence 9999999999999986
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=100.00 E-value=1.1e-34 Score=237.38 Aligned_cols=111 Identities=18% Similarity=0.303 Sum_probs=106.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (148)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na 80 (148)
.|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|. ++|++||+|||+++|+|+|+||
T Consensus 235 ~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vleG~~a 309 (352)
T 3bh7_B 235 DESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFNGDGA 309 (352)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEESTTH
T ss_pred ccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEECcCH
Confidence 48999999999999999999999999999999999999999999999999997 6799999999999999999999
Q ss_pred hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC
Q 032047 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 133 (148)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~ 133 (148)
|+.||+++|+++| .|+||||||+++|++|+++||+.
T Consensus 310 v~~~R~l~g~t~p-----------------gN~vHgSds~esA~~Ei~~fF~~ 345 (352)
T 3bh7_B 310 VEVCQLIVNEIFN-----------------GTKMFVSESKETASGDVDSFYNF 345 (352)
T ss_dssp HHHHHHHHHHHCT-----------------TSCEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC-----------------CceEEecCCHHHHHHHHHHhcCc
Confidence 9999999999985 39999999999999999999964
No 31
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=78.14 E-value=1.8 Score=28.10 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=37.3
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHH
Q 032047 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYED 51 (148)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~ 51 (148)
..+++++|..+.. +.+|.+.|.+..-.|+++. .|+.++|+++.-.
T Consensus 5 ~~Ivv~~P~sy~D--a~~I~d~Lr~~~~VvvNL~--~ld~~~AqRivDF 49 (87)
T 3p04_A 5 STIVPVELHSFED--AQVIGGAFRDGDAVVFDMS--LLSREEARRIVDF 49 (87)
T ss_dssp CSCEEEECSSGGG--HHHHHHHHHTTCCEEEECT--TSCHHHHHHHHHH
T ss_pred cEEEEEecCcHHH--HHHHHHHHHCCCEEEEECC--CCCHHHHHHHHHH
Confidence 4578999999987 7899999998888888777 6699999988544
No 32
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=29.54 E-value=40 Score=22.94 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=25.1
Q ss_pred ecCHHHHHHHHHHhc------CCCChhhHHHhhhcCCE
Q 032047 39 TVDRPFAEKHYEDLS------SKPFFGSLIEYITSGPV 70 (148)
Q Consensus 39 ~l~~~~a~~~y~~~~------~~~~~~~l~~~~~sgp~ 70 (148)
.|+.+++.++..... |+-.|.+.++.|.+||.
T Consensus 117 ~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~p~ 154 (159)
T 3i5g_C 117 RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCCCC
Confidence 578999999987642 34579999999999984
No 33
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=26.56 E-value=68 Score=24.26 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=45.1
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhc--CC-----------CChhhHHHhhhcCCE
Q 032047 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--SK-----------PFFGSLIEYITSGPV 70 (148)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~--~~-----------~~~~~l~~~~~sgp~ 70 (148)
.+++.-|+..+ -++.....+.|..|..-|.+.++.++++++....+ +. |.+..+.+.+.+|++
T Consensus 68 ~V~i~tp~~~H----~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~g~i 143 (294)
T 1lc0_A 68 VAYICSESSSH----EDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREVLGKEL 143 (294)
T ss_dssp EEEECSCGGGH----HHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHTTCCE
T ss_pred EEEEeCCcHhH----HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhccHHHHHHHHHHhcCCe
Confidence 35566676554 35666677889999999999999999999976543 22 234555677778876
Q ss_pred E
Q 032047 71 V 71 (148)
Q Consensus 71 v 71 (148)
.
T Consensus 144 ~ 144 (294)
T 1lc0_A 144 L 144 (294)
T ss_dssp E
T ss_pred e
Confidence 3
No 34
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=25.60 E-value=54 Score=25.25 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=36.1
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhc
Q 032047 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (148)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~ 53 (148)
.++|--|+... .++.....++|..|..-|-+.++.++|+++....+
T Consensus 97 aV~IatP~~~H----~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 142 (393)
T 4fb5_A 97 VVSVTTPNQFH----AEMAIAALEAGKHVWCEKPMAPAYADAERMLATAE 142 (393)
T ss_dssp EEEECSCGGGH----HHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred EEEECCChHHH----HHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHH
Confidence 45666777665 35666666899999999999999999999976643
No 35
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=23.22 E-value=1.4e+02 Score=18.54 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=24.2
Q ss_pred EEEEEEcCcccccCchH-HHHHHHHHcCCcccceEE
Q 032047 3 QTFIMIKPDGVQRGLVG-EIIIRFEKKGFSLKGLKL 37 (148)
Q Consensus 3 ~tl~lIKPda~~~~~~g-~Ii~~i~~~gf~I~~~k~ 37 (148)
+-.+.+||...+- .| .|...|...||.+...|.
T Consensus 6 ~V~V~lK~gVlDp--qG~av~~al~~LG~~v~~VR~ 39 (85)
T 1gtd_A 6 EVRIRLKKGMLNP--EAATIERALALLGYEVEDTDT 39 (85)
T ss_dssp EEEEEECTTSCCH--HHHHHHHHHHHHTCCCEEEEE
T ss_pred EEEEEECCCCcCc--HHHHHHHHHHHcCCChheEEE
Confidence 3457789998875 45 677888889997666554
No 36
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=22.85 E-value=1.4e+02 Score=18.39 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=24.6
Q ss_pred EEEEEEcCcccccCchH-HHHHHHHHcCCcccceEEe
Q 032047 3 QTFIMIKPDGVQRGLVG-EIIIRFEKKGFSLKGLKLM 38 (148)
Q Consensus 3 ~tl~lIKPda~~~~~~g-~Ii~~i~~~gf~I~~~k~~ 38 (148)
+-.+.+||...+- .| .|...+...||.+...|..
T Consensus 7 ~V~V~lK~gVlDp--qG~av~~al~~LG~~v~~VR~g 41 (84)
T 2dgb_A 7 TLLIELKKGILDP--QGRAVEGVLKDLGHPVEEVRVG 41 (84)
T ss_dssp EEEEEECTTSCCH--HHHHHHHHHHHTTCCCSEEEEE
T ss_pred EEEEEECCCCcCh--HHHHHHHHHHHCCCChhhEEEE
Confidence 3457789998875 45 6778888999986665543
No 37
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=22.75 E-value=76 Score=25.02 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=35.5
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHh
Q 032047 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL 52 (148)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~ 52 (148)
.++|.-|.... -+++....+.|..|..-|.+.++.++++++....
T Consensus 88 ~V~i~tp~~~H----~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 132 (398)
T 3dty_A 88 AVSIATPNGTH----YSITKAALEAGLHVVCEKPLCFTVEQAENLRELS 132 (398)
T ss_dssp EEEEESCGGGH----HHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHH
T ss_pred EEEECCCcHHH----HHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHH
Confidence 45666777654 3666677779999999999999999999997654
No 38
>1r57_A Conserved hypothetical protein; GCN5, N-acetyltransferase, structural genomics, PSI, protein structure initiative; NMR {Staphylococcus aureus} SCOP: d.108.1.1 PDB: 2h5m_A*
Probab=21.36 E-value=1.2e+02 Score=18.32 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=27.3
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHh
Q 032047 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL 52 (148)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~ 52 (148)
-+.|.|+.-.+|+...+++.+.+.-.. .+.+.+.+. ..+..||..+
T Consensus 40 ~~~V~p~~rg~GiG~~Ll~~~~~~a~~-~g~~~i~l~-~~~~nfy~k~ 85 (102)
T 1r57_A 40 HTGVSDELGGQGVGKKLLKAVVEHARE-NNLKIIASC-SFAKHMLEKE 85 (102)
T ss_dssp EEEECCSSSTTCTHHHHHHHHHHHHHH-HTCEEEESS-HHHHHHHHHC
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHHHH-cCCCEEEcC-HHHHHHHHhC
Confidence 457888877777555555555432222 234455666 5678888765
No 39
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=21.20 E-value=1.6e+02 Score=22.14 Aligned_cols=66 Identities=8% Similarity=-0.030 Sum_probs=43.7
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhc--CC-----------CChhhHHHhhhcCCEE
Q 032047 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--SK-----------PFFGSLIEYITSGPVV 71 (148)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~--~~-----------~~~~~l~~~~~sgp~v 71 (148)
+++--|+... .+++....+.|..|..-|.+.++.++++++....+ +. |.+..+.+.+.+|.+.
T Consensus 66 V~i~tp~~~h----~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~G~i~ 141 (325)
T 2ho3_A 66 VYIASPNSLH----FAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADXQVL 141 (325)
T ss_dssp EEECSCGGGH----HHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECTTTTCHHHHHHHHHHTTSCEE
T ss_pred EEEeCChHHH----HHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHcCCEEEEEEhhhcChHHHHHHHHhhhcCcc
Confidence 3444454433 36666777889999999999999999999876532 21 2244455666678766
Q ss_pred EEE
Q 032047 72 AMI 74 (148)
Q Consensus 72 ~l~ 74 (148)
.+.
T Consensus 142 ~v~ 144 (325)
T 2ho3_A 142 GAD 144 (325)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 40
>3gy9_A GCN5-related N-acetyltransferase; YP_001815201.1, putative acetyltransferase; HET: MSE COA SO4; 1.52A {Exiguobacterium sibiricum 255-15} PDB: 3gya_A*
Probab=20.90 E-value=33 Score=21.88 Aligned_cols=46 Identities=13% Similarity=0.316 Sum_probs=29.8
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHh
Q 032047 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL 52 (148)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~ 52 (148)
.+.|.|+.-.+|+...+++.+.+.-.. +.+.+.++...+..||...
T Consensus 81 ~l~V~p~~rg~Gig~~Ll~~~~~~a~~--~~~~i~l~~~~a~~~y~k~ 126 (150)
T 3gy9_A 81 HVYVLPEARSHGIGTALLEKIMSEAFL--TYDRLVLYSEQADPFYQGL 126 (150)
T ss_dssp EEEECGGGTTSSHHHHHHHHHHHHHTT--TCSEEEECCSSCHHHHHHT
T ss_pred EEEECHhhcCCCHHHHHHHHHHHHHHh--CCCEEEEechHHHHHHHHC
Confidence 356889887778656677777654444 3444444446778888764
No 41
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=20.38 E-value=61 Score=20.48 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=17.7
Q ss_pred hHHHHHHHHHcCCcccceEEe
Q 032047 18 VGEIIIRFEKKGFSLKGLKLM 38 (148)
Q Consensus 18 ~g~Ii~~i~~~gf~I~~~k~~ 38 (148)
-+.++++|+..||+++.+.-+
T Consensus 52 Pr~VLnKLE~~G~rVvsmtGv 72 (83)
T 1jg5_A 52 PRIVLDKLECRGFRVLSMTGV 72 (83)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE
T ss_pred hHHHHHHHhccCeEEEEEecC
Confidence 468999999999999887644
Done!