RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 032047
(148 letters)
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved
proteins from bacteria to humans that generally catalyze
the transfer of gamma-phosphates of a nucleoside
triphosphate (NTP) donor onto a nucleoside diphosphate
(NDP) acceptor through a phosphohistidine intermediate.
The mammalian nm23/NDP kinase gene family can be divided
into two distinct groups. The group I genes encode
proteins that generally have highly homologous
counterparts in other organisms and possess the classic
enzymatic activity of a kinase. This group includes
vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its
counterparts in bacteria, archea and other eukaryotes.
NDP kinases exist in two different quaternary
structures; all known eukaryotic enzymes are hexamers,
while some bacterial enzymes are tetramers, as in
Myxococcus. They possess the NDP kinase active site
motif (NXXH[G/A]SD) and the nine residues that are most
essential for catalysis.
Length = 130
Score = 250 bits (642), Expect = 1e-87
Identities = 82/130 (63%), Positives = 104/130 (80%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T ++IKPDGVQRGL+GEII RFE+KG + LK++ + AE+HY + KPFF L
Sbjct: 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPEL 60
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+E++TSGPVVAM+ EGE VKT R ++GATNPA +APGTIRGD A+ GRNI+HGSDSVE
Sbjct: 61 VEFMTSGPVVAMVLEGENAVKTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSDSVE 120
Query: 122 SAQKEIALWF 131
SA++EIALWF
Sbjct: 121 SAEREIALWF 130
>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate
kinase/apyrimidinic endonuclease/3'-; Validated.
Length = 134
Score = 244 bits (626), Expect = 4e-85
Identities = 79/133 (59%), Positives = 101/133 (75%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+TF +IKPD VQRGL+GEII RFEKKG + LK+M + R AE HY + KPFFG
Sbjct: 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGE 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+E++TSGPVV M+ EGE + R ++GATNPA++APGTIRGD A+ G N++HGSDS
Sbjct: 61 LVEFMTSGPVVVMVLEGENAIAKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGSDSP 120
Query: 121 ESAQKEIALWFPD 133
ESA +EIAL+F +
Sbjct: 121 ESAAREIALFFSE 133
>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase.
Length = 135
Score = 241 bits (617), Expect = 1e-83
Identities = 81/135 (60%), Positives = 105/135 (77%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T ++IKPD VQRGL+GEII RFEKKGF + LK++ + R AE+HY + KPFF L
Sbjct: 1 ERTLVIIKPDAVQRGLIGEIISRFEKKGFKIVALKMLQLTREQAEEHYAEHKGKPFFPGL 60
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+E++TSGPVVAM+ EGE V R ++GATNPA++APGTIRGD A+ GRN +HGSDS E
Sbjct: 61 VEFMTSGPVVAMVLEGENAVSVVRELMGATNPAEAAPGTIRGDFAVSIGRNAVHGSDSPE 120
Query: 122 SAQKEIALWFPDGPI 136
SA++EIAL+FP+ I
Sbjct: 121 SAEREIALFFPEEEI 135
>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic;
Provisional.
Length = 149
Score = 236 bits (605), Expect = 9e-82
Identities = 92/148 (62%), Positives = 115/148 (77%), Gaps = 1/148 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TFIM+KPDGVQRGLVGEII RFEKKG+ L LK++ AE+HY++ KPFF
Sbjct: 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPG 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++YI+SGPVV M+WEG+ VVK GR ++GATNP +SAPGTIRGD + GRN+IHGSDSV
Sbjct: 62 LVKYISSGPVVCMVWEGKNVVKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSV 121
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIY 147
ESA++EIALWF P+ ++W S WIY
Sbjct: 122 ESAKREIALWFKPEELVSWTSHSSKWIY 149
>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific
conversions of nucleoside diphosphates to nucleoside
triphosphates. These enzymes play important roles in
bacterial growth, signal transduction and pathogenicity.
Length = 135
Score = 229 bits (586), Expect = 5e-79
Identities = 75/132 (56%), Positives = 101/132 (76%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T +IKPD VQRGL+GEII RFE+KGF + +K++ + AE+ Y + KPFF L
Sbjct: 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEEQAEEFYAEHEGKPFFNDL 60
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
+E++TSGPVVAM+ EGE VKT RT++G T+P ++APGTIRGD + GRN +HGSDS E
Sbjct: 61 VEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGSDSPE 120
Query: 122 SAQKEIALWFPD 133
SA++EIAL+FP+
Sbjct: 121 SAEREIALFFPE 132
>gnl|CDD|223183 COG0105, Ndk, Nucleoside diphosphate kinase [Nucleotide transport
and metabolism].
Length = 135
Score = 225 bits (577), Expect = 1e-77
Identities = 78/133 (58%), Positives = 100/133 (75%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+T +IKPD V+RGL+GEII RFEKKG + LK++ + R AE HY + KPFFG
Sbjct: 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGE 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+E+ITSGPVVAM+ EGE + R ++GATNPA +APGTIRGD A+ G N++HGSDS
Sbjct: 62 LVEFITSGPVVAMVLEGENAISVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGSDSP 121
Query: 121 ESAQKEIALWFPD 133
ESA++EIAL+F
Sbjct: 122 ESAEREIALFFSK 134
>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase.
Length = 238
Score = 218 bits (558), Expect = 2e-73
Identities = 90/149 (60%), Positives = 116/149 (77%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+TFI IKPDGVQRGL+ EII RFE+KGF L +K++ + FA+KHY DL +PFF
Sbjct: 88 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNG 147
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L ++++SGPVVAM+WEGEGV+K GR +IGAT+P +S PGTIRGDLA+V GRNIIHGSD
Sbjct: 148 LCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 207
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
E+A+ EI LWF P+ +++ S+ WIY
Sbjct: 208 ETAKDEINLWFKPEELVSYTSNAEKWIYG 236
>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks):
NDP kinases, responsible for the synthesis of nucleoside
triphosphates (NTPs), are involved in numerous
regulatory processes associated with proliferation,
development, and differentiation. They are vital for
DNA/RNA synthesis, cell division, macromolecular
metabolism and growth. The enzymes generate NTPs or
their deoxy derivatives by terminal (gamma)
phosphotransfer from an NTP such as ATP or GTP to any
nucleoside diphosphate (NDP) or its deoxy derivative.
The sequence of NDPk has been highly conserved through
evolution. There is a single histidine residue conserved
in all known NDK isozymes, which is involved in the
catalytic mechanism. The first confirmed metastasis
suppressor gene was the NDP kinase protein encoded by
the nm23 gene. Unicellular organisms generally possess
only one gene encoding NDP kinase, while most
multicellular organisms possess not only an ortholog
that provides most of the NDP kinase enzymatic activity
but also multiple divergent paralogous genes. The human
genome codes for at least nine NDP kinases and can be
classified into two groups, Groups I and II, according
to their genomic architecture and distinct enzymatic
activity. Group I isoforms (A-D) are well-conserved,
catalytically active, and share 58-88% identity between
each other, while Group II are more divergent, with only
NDPk6 shown to be active. NDP kinases exist in two
different quaternary structures; all known eukaryotic
enzymes are hexamers, while some bacterial enzymes are
tetramers, as in Myxococcus. The hexamer can be viewed
as trimer of dimers, while tetramers are dimers of
dimers, with the dimerization interface conserved.
Length = 133
Score = 173 bits (440), Expect = 8e-57
Identities = 60/133 (45%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T +IKPD V GL+GEII+R E GF + +K + + AE+ Y + +PFF L
Sbjct: 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDL 60
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ---SAPGTIRGDLAIVTGRNIIHGSD 118
+++++SGPVVAMI E + V R ++G TNP APG++R D RN +HGSD
Sbjct: 61 VQFMSSGPVVAMILEKDNAVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSD 120
Query: 119 SVESAQKEIALWF 131
SVESA +EIA +F
Sbjct: 121 SVESAAREIAFFF 133
>gnl|CDD|184733 PRK14540, PRK14540, nucleoside diphosphate kinase; Provisional.
Length = 134
Score = 161 bits (409), Expect = 4e-52
Identities = 67/131 (51%), Positives = 94/131 (71%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TF+ +KPD V+R L+G+II RFE KGF + +K++ + R AE++YE+ K F+
Sbjct: 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYER 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
LI ++TSG +VAM+ EGE + T R +IG TNPA++ PGTIRGD + T NIIH SDS
Sbjct: 62 LINFMTSGRIVAMVIEGENAISTVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHASDSK 121
Query: 121 ESAQKEIALWF 131
ESA++EI L+F
Sbjct: 122 ESAEREIKLFF 132
>gnl|CDD|184734 PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional.
Length = 139
Score = 127 bits (320), Expect = 2e-38
Identities = 59/129 (45%), Positives = 79/129 (61%)
Query: 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 62
+TF MIKPD V+ G +G I+ GF + +KL + AE Y + +PF+G L+
Sbjct: 5 RTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELV 64
Query: 63 EYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVES 122
E+++ GP+VA I E E V+ RT+IGATNPA +A GTIR A G N +HGSDS E+
Sbjct: 65 EFMSRGPIVAAILEKENAVEDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGSDSDEN 124
Query: 123 AQKEIALWF 131
AQ E A F
Sbjct: 125 AQIEGAFHF 133
>gnl|CDD|173008 PRK14542, PRK14542, nucleoside diphosphate kinase; Provisional.
Length = 137
Score = 122 bits (306), Expect = 1e-36
Identities = 58/137 (42%), Positives = 84/137 (61%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
M +TFIMIKPDGV+ VG I+ R EK+GF + GLK + + A++ Y+ S++PF+
Sbjct: 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYND 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L Y++SGP+VA E + V R +IGAT+P ++A GTIR A N +HGSDS
Sbjct: 61 LCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDSD 120
Query: 121 ESAQKEIALWFPDGPIN 137
+A EI+ +F +
Sbjct: 121 ANAALEISFFFKGNELF 137
>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional.
Length = 140
Score = 121 bits (304), Expect = 3e-36
Identities = 55/131 (41%), Positives = 83/131 (63%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+T ++KPD V++ L+G +I + E+ GF + +K + + A + Y +PF+G
Sbjct: 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGE 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+E+++SGP V MI E E V RT+IGAT+PA++A GT+R A G NI+HGSDS
Sbjct: 61 LVEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGSDSA 120
Query: 121 ESAQKEIALWF 131
E+A E +F
Sbjct: 121 ENAAIEAGFFF 131
>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional.
Length = 183
Score = 119 bits (300), Expect = 6e-35
Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 43/179 (24%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDR-------PFAEKHYEDLS 53
+E+T +++KPD V+RGLVGEII RFEK G + +K++ P +E+ Y +
Sbjct: 3 IERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVG 62
Query: 54 SKPF--------------------------FGSLIEYITSGPVVAMIWEGEGVVKTGRTI 87
+K SL++Y+TSGP+VAM+ +G V+ R +
Sbjct: 63 NKLLKAYQELGIDPRARLGTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKL 122
Query: 88 IGATNPAQSAPGTIRGD-------LAIVTGR---NIIHGSDSVESAQKEIALWFPDGPI 136
+G T+P ++ PGTIRGD LA GR N++H SDS E A++EI WF + I
Sbjct: 123 VGPTSPHKAPPGTIRGDYSIDSPDLAAEEGRVVYNLVHASDSPEEAEREIKFWFREEEI 181
>gnl|CDD|237749 PRK14543, PRK14543, nucleoside diphosphate kinase; Provisional.
Length = 169
Score = 118 bits (296), Expect = 2e-34
Identities = 57/151 (37%), Positives = 88/151 (58%), Gaps = 15/151 (9%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKH--YEDLS---SK 55
+++T +IKPDGV+RGL+G ++ RFE+ G + K++ VDR AEKH Y+D++ +
Sbjct: 5 IQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGE 64
Query: 56 PFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR---- 111
+ SLI++I+S PV + EG V+ R G+T P + PGTIRGD + +
Sbjct: 65 AVWKSLIKFISSSPVFVFVVEGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNYANE 124
Query: 112 ------NIIHGSDSVESAQKEIALWFPDGPI 136
N+IH S + + A +EI +WF D I
Sbjct: 125 KGFSVYNVIHASANEDDALREIPIWFKDNEI 155
>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein.
Length = 177
Score = 104 bits (262), Expect = 2e-29
Identities = 57/138 (41%), Positives = 81/138 (58%), Gaps = 9/138 (6%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTV--DRPFAEKHYEDLSSKPFFG 59
E+T MIKPDG+ I + GFS+ +K MT D A Y + SS+ FF
Sbjct: 30 ERTLAMIKPDGLSGNYTERIKEVILESGFSI--VKEMTTQLDEDRASLFYAEHSSRSFFP 87
Query: 60 SLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA----PGTIRGDLAIVTGRNIIH 115
SL++Y+TSGPV+ M+ E E V RT+IG T+ A+ A P +IR + + +N +H
Sbjct: 88 SLVKYMTSGPVLVMVLEKENAVSDWRTLIGPTD-ARKAKISHPNSIRAMCGLDSEKNCVH 146
Query: 116 GSDSVESAQKEIALWFPD 133
GSDS ESA++EI+ +F D
Sbjct: 147 GSDSPESAEREISFFFGD 164
>gnl|CDD|239878 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 domain A (NDPk7A):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 131
Score = 102 bits (255), Expect = 9e-29
Identities = 51/133 (38%), Positives = 77/133 (57%), Gaps = 5/133 (3%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T +IKPD + +G+II E GF++ K+ + R A+ Y + SKPF+ L
Sbjct: 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNEL 58
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNP--AQS-APGTIRGDLAIVTGRNIIHGSD 118
++++TSGP+VAM G+ + R ++G TN A+S AP +IR RN HGSD
Sbjct: 59 VQFMTSGPIVAMELVGDDAISEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSD 118
Query: 119 SVESAQKEIALWF 131
SV SA +E+ +F
Sbjct: 119 SVASAARELEFFF 131
>gnl|CDD|239877 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (NDP kinase 6,
NDPk6, NM23-H6; NME6; Inhibitor of p53-induced
apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding
NDPk6 is expressed mainly in mitochondria, but also
found at a lower level in most tissues. NDPk6 has all
nine residues considered crucial for enzyme structure
and activity, and has been found to have NDP kinase
activity. It may play a role in cell growth and cell
cycle progression. The nm23-H6 gene locus has been
implicated in a variety of malignant tumors.
Length = 135
Score = 100 bits (250), Expect = 5e-28
Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRF-EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+ T +IKPD V L E + + GF++ K + AE+ Y + K F+
Sbjct: 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDR 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATN--PAQ-SAPGTIRGDLAIVTGRNIIHGS 117
L+ ++TSGP A+I E +KT R ++G T A+ SAP +IRG + RN HGS
Sbjct: 61 LVSFMTSGPSWALILAHENAIKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGS 120
Query: 118 DSVESAQKEIALWFP 132
DS SAQ+EIAL+FP
Sbjct: 121 DSPASAQREIALFFP 135
>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 134
Score = 88.1 bits (219), Expect = 3e-23
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Query: 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL-SSKPFFGSLI 62
T +IKP V GL+GEI+ + +GF + L++ + R AE+ E P +++
Sbjct: 3 TVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMV 62
Query: 63 EYITSGPVVAMIWEGEGVVKTGRTIIGATNPA---QSAPGTIRGDLAIVTGRNIIHGSDS 119
+ +TSGP +A+ GE VKT R G +P Q P T+R +N +H +D
Sbjct: 63 DELTSGPCIALEIAGENAVKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDL 122
Query: 120 VESAQKEIALWF 131
E E+ +F
Sbjct: 123 PEDGPLELKFFF 134
>gnl|CDD|239880 cd04418, NDPk5, Nucleoside diphosphate kinase homolog 5 (NDP kinase
homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced
apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is
almost exclusively found in testis, especially in the
flagella of spermatids and spermatozoa, in association
with axoneme microtubules, and may play a role in
spermatogenesis by increasing the ability of late-stage
spermatids to eliminate reactive oxygen species. It
belongs to the nm23 Group II genes and appears to differ
from the other human NDPks in that it lacks two
important catalytic site residues, and thus does not
appear to possess NDP kinase activity. NDPk5 confers
protection from cell death by Bax and alters the
cellular levels of several antioxidant enzymes,
including glutathione peroxidase 5 (Gpx5).
Length = 132
Score = 86.3 bits (214), Expect = 1e-22
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T +IKPD V + E II + GF++ + + + Y + K FF L
Sbjct: 1 ERTLAIIKPDAVHKAEEIEDIIL--ESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHL 58
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ---SAPGTIRGDLAIVTGRNIIHGSD 118
+ Y++SGP+VAM+ + + ++G TN + + P ++R RN +HGSD
Sbjct: 59 VAYMSSGPIVAMVLARHNAISYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSD 118
Query: 119 SVESAQKEIALWFP 132
S SA++EI FP
Sbjct: 119 SFSSAEREIRFMFP 132
>gnl|CDD|239879 cd04416, NDPk_TX, NDP kinase domain of thioredoxin
domain-containing proteins (TXNDC3 and TXNDC6): Txl-2
(TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of
Group II N-terminal thioredoxin domains followed by one
or three NDP kinase domains, respectively. Sptrx-2,
which has a tissue specific distribution in human
testis, has been considered as a member of the nm23
family (nm23-H8) and exhibits a high homology with sea
urchin IC1 (intermediate chain-1) protein, a component
of the sperm axonemal outer dynein arm complex. Txl-2 is
mainly represented in close association with
microtubules within tissues with cilia and flagella such
as seminiferous epithelium (spermatids) and lung airway
epithelium, suggesting possible role in control of
microtubule stability and maintenance.
Length = 132
Score = 80.3 bits (199), Expect = 2e-20
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 4/133 (3%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E T +IKPD V EI+ + ++ GF + K M + A + Y++ + +F L
Sbjct: 1 EYTLALIKPDAVAEK-KDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDL 59
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ---SAPGTIRGDLAIVTGRNIIHGSD 118
+E++TSGP + ++ E V+ R ++G T+P + P ++R A N +HGS
Sbjct: 60 VEFMTSGPSLILVLSKENAVEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSS 119
Query: 119 SVESAQKEIALWF 131
S E A+KEI +F
Sbjct: 120 SAEEAEKEIDFFF 132
>gnl|CDD|213914 TIGR04301, ODC_inducible, ornithine decarboxylase SpeF. Members of
this family are known or trusted examples of ornithine
decarboxylase, all encoded in the immediate vicinity of
an ornithine-putrescine antiporter. Decarboxylation of
ornithine to putrescine, followed by exchange of a
putrescine for a new ornithine, is a proton-motive cycle
that can be induced by low pH and protect a bacterium
against transient exposure to acidic conditions.
Length = 719
Score = 30.1 bits (68), Expect = 0.46
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 45 AEKHYEDLSSKPFFGSLIEYITSG 68
A YE+ PFFG+L++Y+ G
Sbjct: 99 AATKYEEKLLPPFFGALVKYVEQG 122
>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the
nitrilase superfamily; some members of this subgroup
have an N-terminal RimI domain (class 12 nitrilases).
Some members of this subgroup are implicated in
post-translational modification, as they contain an
N-terminal GCN5-related N-acetyltransferase (GNAT)
protein RimI family domain. The nitrilase superfamily is
comprised of nitrile- or amide-hydrolyzing enzymes and
amide-condensing enzymes, which depend on a Glu-Lys-Cys
catalytic triad. This superfamily has been classified in
the literature based on global and structure based
sequence analysis into thirteen different enzyme classes
(referred to as 1-13), this subgroup corresponds to
class 12. Members of this superfamily generally form
homomeric complexes, the basic building block of which
is a homodimer.
Length = 280
Score = 27.6 bits (62), Expect = 2.4
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 104 DLAIVTGRNIIHGSDSVESAQK--EIALWF-PDGPINWQSSLHP 144
+LA G NII GS V + A F PDG I Q LH
Sbjct: 79 ELARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTIGHQDKLHM 122
>gnl|CDD|235065 PRK02733, PRK02733, photosystem I reaction center subunit IX;
Provisional.
Length = 42
Score = 25.0 bits (55), Expect = 3.6
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 61 LIEYITSGPVVAMIW 75
L +++++ PVVA IW
Sbjct: 4 LTKFLSTAPVVAAIW 18
>gnl|CDD|235615 PRK05812, secD, preprotein translocase subunit SecD; Reviewed.
Length = 462
Score = 26.7 bits (60), Expect = 4.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 96 SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIAL 129
SAP I+ AI G I G+ + E A+ ++AL
Sbjct: 239 SAP-VIQS--AITGGSAQITGNFTAEEAR-DLAL 268
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase. This model discriminates
cysteine synthases (EC 2.5.1.47) (both CysK and CysM)
from cystathionine beta-synthase, a protein found
primarily in eukaryotes and carrying a C-terminal CBS
domain lacking from this protein. Bacterial proteins
lacking the CBS domain but otherwise showing
resemblamnce to cystathionine beta-synthases and
considerable phylogenetic distance from known cysteine
synthases were excluded from the seed and score below
the trusted cutoff [Amino acid biosynthesis, Serine
family].
Length = 299
Score = 26.5 bits (59), Expect = 5.8
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 69 PVVAMIWEGE--GVVKTGRTIIGAT 91
++MI + E G++K G TII AT
Sbjct: 41 IALSMIEDAEKRGLLKPGDTIIEAT 65
>gnl|CDD|215101 PLN00203, PLN00203, glutamyl-tRNA reductase.
Length = 519
Score = 26.6 bits (59), Expect = 5.9
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 77 GEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIAL 129
G+GV GR + G A +A +R T NI G+ SV SA E+AL
Sbjct: 210 GQGVDGFGRNLSGLFKHAITAGKRVR------TETNIASGAVSVSSAAVELAL 256
>gnl|CDD|193121 pfam12643, MazG-like, MazG-like family. This family of short
proteins are distantly related to the MazG enzyme. This
suggests that these proteins are enzymes that catalyze
a related reaction.
Length = 98
Score = 25.6 bits (57), Expect = 6.6
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 11/55 (20%)
Query: 11 DGVQRGLVGEIIIRF---EKKGFS--------LKGLKLMTVDRPFAEKHYEDLSS 54
+ + L G III + + G + LKL ++ EK Y DLS
Sbjct: 35 EAILDCLAGIIIILYLLARRLGIDFEELDEKIKEKLKLGILEEHEVEKWYGDLSE 89
>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase.
Length = 574
Score = 26.5 bits (58), Expect = 7.3
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 39 TVDRP---FAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 78
TV++P F HY S +GSLI + GP + ++GE
Sbjct: 114 TVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERLRYDGE 156
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and
metabolism].
Length = 300
Score = 26.0 bits (58), Expect = 7.9
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 69 PVVAMIWEGE--GVVKTGRTIIGAT 91
+ MI + E G++K G TI+ AT
Sbjct: 45 IALYMIEDAEKRGLLKPGGTIVEAT 69
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.422
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,715,558
Number of extensions: 697203
Number of successful extensions: 632
Number of sequences better than 10.0: 1
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 45
Length of query: 148
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 60
Effective length of database: 7,034,450
Effective search space: 422067000
Effective search space used: 422067000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)