RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032047
(148 letters)
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate,
transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Length = 149
Score = 289 bits (742), Expect = e-102
Identities = 120/148 (81%), Positives = 134/148 (90%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
MEQTFIMIKPDGVQRGL+GE+I RFEKKGF+LKGLKL++V+R FAEKHYEDLSSK FF
Sbjct: 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++YI SGPVVAMIWEG+ VV TGR IIGATNPA S PGTIRGD AI GRN+IHGSDSV
Sbjct: 61 LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSV 120
Query: 121 ESAQKEIALWFPDGPINWQSSLHPWIYE 148
ESA+KEIALWFPDGP+NWQSS+HPW+YE
Sbjct: 121 ESARKEIALWFPDGPVNWQSSVHPWVYE 148
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza
sativa} SCOP: d.58.6.1
Length = 150
Score = 288 bits (739), Expect = e-102
Identities = 104/148 (70%), Positives = 125/148 (84%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
MEQ+FIMIKPDGVQRGL+G+II RFEKKGF L+G+K M V+R FA++HY DLS KPFF
Sbjct: 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+EYI SGPVVAM+WEG+ VV TGR IIGAT P ++APGTIR D A+ GRN+IHGSDSV
Sbjct: 62 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 121
Query: 121 ESAQKEIALWFPDGPINWQSSLHPWIYE 148
++ +KEIALWFP+G W+S+LHPWIYE
Sbjct: 122 DNGKKEIALWFPEGLAEWRSNLHPWIYE 149
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, encepha cuniculi, structural
genomics; 2.08A {Encephalitozoon cuniculi}
Length = 151
Score = 284 bits (729), Expect = e-101
Identities = 74/147 (50%), Positives = 93/147 (63%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+TFIMIKPD ++R L+ II RFE+KG L K + R E HY LSS PFF
Sbjct: 5 MERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSE 64
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
++E + SG V+AM+W G+ V GR +IG TNP ++ GTIRGD + TG+NIIHGSD V
Sbjct: 65 MVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCV 124
Query: 121 ESAQKEIALWFPDGPINWQSSLHPWIY 147
E+A+KEI LW D WIY
Sbjct: 125 ENAEKEIKLWIGDDVQPVSFFDKEWIY 151
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A
{Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Length = 153
Score = 284 bits (729), Expect = e-100
Identities = 93/149 (62%), Positives = 117/149 (78%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+T+IM+KPDG+QRGLVGEII RFEKKGF L GLK+ + AE+HY+DLS+K FF +
Sbjct: 5 VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPN 64
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
LIEYITSGPVV M WEG GVV + R +IG T+P Q+ PGTIRGDLA+ TGRNI+HGSDS
Sbjct: 65 LIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSP 124
Query: 121 ESAQKEIALWFPDGPI-NWQSSLHPWIYE 148
E+ ++EI LWF +G + W S+L W+ E
Sbjct: 125 ENGKREIGLWFKEGELCKWDSALATWLRE 153
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein
family; HET: ADP; 2.22A {Staphylococcus aureus subsp}
PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Length = 157
Score = 284 bits (728), Expect = e-100
Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+TF+MIKPD VQR L+GE+I R E+KG L G KLM V AE HY + KPF+
Sbjct: 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYND 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
LI +ITS PV AM+ EGE V R IIG+TNP++++PG+IRGDL + GRNIIHGSDS+
Sbjct: 61 LISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSL 120
Query: 121 ESAQKEIALWFPDGPI-NWQSSLHPWIYE 148
ESA++EI LWF + I ++ S W+YE
Sbjct: 121 ESAEREINLWFNENEITSYASPRDAWLYE 149
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23
GEN, hexamer, activator, oncogene, ATP-binding, cell
cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens}
SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A
1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A*
1ndl_A*
Length = 151
Score = 282 bits (723), Expect = e-100
Identities = 91/149 (61%), Positives = 114/149 (76%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+TFI IKPDGVQRGLVGEII RFE+KGF L +K + ++HY DL +PFF
Sbjct: 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPG 62
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S PGTIRGD I GRNIIHGSDSV
Sbjct: 63 LVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 122
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
+SA+KEI+LWF P+ ++++S H W+YE
Sbjct: 123 KSAEKEISLWFKPEELVDYKSCAHDWVYE 151
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis,
transferase, struc genomics, structural genomics
consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP:
d.58.6.1
Length = 169
Score = 282 bits (724), Expect = e-100
Identities = 85/149 (57%), Positives = 110/149 (73%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TF+ +KPDGVQR LVGEI+ RFE+KGF L LKL+ +HY +L +PF+G
Sbjct: 21 HERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGR 80
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++Y+ SGPVVAM+W+G VV+T R +IGATNPA + PGTIRGD I G+N+IHGSDSV
Sbjct: 81 LVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSV 140
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
ESA++EIALWF D + W+ S W+YE
Sbjct: 141 ESARREIALWFRADELLCWEDSAGHWLYE 169
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta
sandwich, ATP-binding, magnesium, metal-B mitochondrion;
3.10A {Saccharomyces cerevisiae}
Length = 161
Score = 282 bits (724), Expect = e-100
Identities = 82/149 (55%), Positives = 110/149 (73%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TFI +KPDGVQRGLV +I+ RFEKKG+ L +KL+ D E+HY + KPFF
Sbjct: 13 TERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPK 72
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
++ ++ SGP++A +WEG+ VV+ GRTI+GATNP SAPGTIRGD I GRN+ HGSDSV
Sbjct: 73 MVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSV 132
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
+SA++EI LWF + ++W+S+ WIYE
Sbjct: 133 DSAEREINLWFKKEELVDWESNQAKWIYE 161
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A*
4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Length = 161
Score = 282 bits (723), Expect = e-99
Identities = 89/149 (59%), Positives = 110/149 (73%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TFI +KPDGVQR LVGEII RFE KG+ L GLKL+ A++HY DL+SKPF+
Sbjct: 11 SERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSG 70
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+ Y +SGP+V M+WEG GVVK GR ++GATNPA S PGTIRGD A+ GRN+ HGSDSV
Sbjct: 71 LVSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSV 130
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
ESA++EIA WF + ++W S IYE
Sbjct: 131 ESAKREIAFWFKAEELVSWTSHSVKQIYE 159
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum
sativum} SCOP: d.58.6.1
Length = 182
Score = 283 bits (725), Expect = 1e-99
Identities = 88/149 (59%), Positives = 117/149 (78%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+TFI IKPDGVQRGL+ EII RFE+KGF L G+K++ + FA++HY DL +PFF
Sbjct: 32 LERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNG 91
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L ++++SGPV+AM+WEGEGV+ GR +IGAT+P +SAPGTIRGDLA+V GRNIIHGSD
Sbjct: 92 LCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGP 151
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
E+A+ EI LWF P+ +++ S+ WIY
Sbjct: 152 ETAKDEIKLWFKPEELVSFTSNSEKWIYG 180
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding,
transferase, tumor suppressor; 2.10A {Homo sapiens}
Length = 172
Score = 282 bits (723), Expect = 2e-99
Identities = 95/149 (63%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK M ++HY DL +PFF
Sbjct: 24 CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAG 83
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S PGTIRGD I GRNIIHGSDSV
Sbjct: 84 LVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 143
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
ESA+KEI LWF P+ +++ S WIYE
Sbjct: 144 ESAEKEIGLWFHPEELVDYTSCAQNWIYE 172
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians,
transferase; 2.20A {Virgibacillus halodenitrificans}
SCOP: d.58.6.1
Length = 150
Score = 280 bits (720), Expect = 2e-99
Identities = 78/148 (52%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TF+M+KPDGVQR LVGE++ RFE KG L G KLM + + A HY +L PFFG
Sbjct: 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+ TSGPV AM+WEG T R I+GATNP+ +APGTIRGD + GRN IHGSDS
Sbjct: 62 LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSA 121
Query: 121 ESAQKEIALWFPDGPI-NWQSSLHPWIY 147
SA KEI +F G + + IY
Sbjct: 122 GSAAKEIGAFFGGGEAASGTPAAAADIY 149
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, giardiasis; 2.65A {Giardia lamblia}
Length = 155
Score = 280 bits (720), Expect = 2e-99
Identities = 81/149 (54%), Positives = 108/149 (72%), Gaps = 1/149 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TF+M+KPDGVQRGLVGEII RFE++GF L +K + E+HY++ +++PFF
Sbjct: 7 RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAG 66
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L ++++SGPV AM+WEG VV RT++G T PA+SAPGTIRGD I GRNIIHGS ++
Sbjct: 67 LCKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANL 126
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIYE 148
+ A +EIALWF P+ +W SL IYE
Sbjct: 127 DDAAREIALWFKPEEVASWSCSLESHIYE 155
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid,
seattle structural genomics center for infect disease,
babesiosis; 2.50A {Babesia bovis}
Length = 156
Score = 280 bits (719), Expect = 3e-99
Identities = 73/148 (49%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+T+IM+KPDGVQRGL+GEI+ RFE KG L K +HY + KPFF
Sbjct: 9 MERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKD 68
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L ++I+ GPV MIWEG +K GR ++G T+P +SA GTIRGD +V NI+H S S
Sbjct: 69 LCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSA 128
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIY 147
E A +E ALWF P+ + W+ S+ WIY
Sbjct: 129 EDAARECALWFTPEQLVTWERSVGGWIY 156
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN
hexamer structure, ATP-binding, magnesium, metal-
nucleotide metabolism; HET: TNM TNV; 1.65A
{Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A*
1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A*
1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A*
1hhq_A 1lwx_A* 1npk_A ...
Length = 155
Score = 280 bits (718), Expect = 4e-99
Identities = 85/148 (57%), Positives = 107/148 (72%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK + + AE HY + +PFFG
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 67
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+IRGD + GRNII GSDSV
Sbjct: 68 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSV 127
Query: 121 ESAQKEIALWFPDGPINWQSSLHPWIYE 148
ESA +EIALWF + + +P +YE
Sbjct: 128 ESANREIALWFKPEELLTEVKPNPNLYE 155
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding,
metal-binding, phosphoprotein, nucleotide metabolism,
cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Length = 148
Score = 280 bits (718), Expect = 5e-99
Identities = 81/148 (54%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+TF+M+KPDGVQR +GEI+ RFEKKGF L G KLM V A +HY + KPFFG
Sbjct: 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGE 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD + +NIIHGSDS+
Sbjct: 61 LVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSL 120
Query: 121 ESAQKEIALWFPDGPI-NWQSSLHPWIY 147
ESA++EI ++F + + ++ ++ WIY
Sbjct: 121 ESAEREIGIFFKEEELVDYSKLMNEWIY 148
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative,
structural genomics, SGPP; 3.05A {Plasmodium falciparum}
SCOP: d.58.6.1
Length = 157
Score = 279 bits (717), Expect = 7e-99
Identities = 80/148 (54%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME++FIMIKPDGVQRGLVG II RFEKKG+ L +K++ ++HY++LS +PFF +
Sbjct: 9 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKN 68
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+ YI+ GPVVAM+WEG +VK GR +IG TNP S GTIRGD + +N+IHGSDSV
Sbjct: 69 LVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSV 128
Query: 121 ESAQKEIALWF-PDGPINWQSSLHPWIY 147
SA KEI +WF + W+ + WI
Sbjct: 129 ASANKEINIWFKAEELTQWKHHMKEWIC 156
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP;
2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB:
2az1_A 2zua_A
Length = 164
Score = 277 bits (710), Expect = 1e-97
Identities = 71/151 (47%), Positives = 97/151 (64%), Gaps = 3/151 (1%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TF+M+KPDGVQRGL+G+I+ R E KG + G K M +D A +HY + KPFF
Sbjct: 8 DERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDG 67
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+ +ITSGPV AM+WEG + R ++GAT+ +APGTIRGD G N+IHGSD
Sbjct: 68 LVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHE 127
Query: 121 ESA--QKEIALWFPDGPI-NWQSSLHPWIYE 148
+ ++EIAL+F D + +W W+YE
Sbjct: 128 DEGANEREIALFFDDDELVDWDRDASAWVYE 158
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
killer-O transferase; 2.40A {Homo sapiens} SCOP:
d.58.6.1
Length = 162
Score = 267 bits (686), Expect = 5e-94
Identities = 73/139 (52%), Positives = 102/139 (73%), Gaps = 1/139 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+T + +KPDGVQR LVG++I RFE++GF+L G+K++ +HY+DL KPF+ +
Sbjct: 24 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPA 83
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
LI Y++SGPVVAM+WEG VV+ R +IG T+ A++APGTIRGD ++ RN+IH SDSV
Sbjct: 84 LIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSV 143
Query: 121 ESAQKEIALWFPDGPI-NW 138
E AQ+EI LWF + +W
Sbjct: 144 EGAQREIQLWFQSSELVSW 162
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural
genomics, NPPSFA, NAT project on protein structural and
functional analyses; HET: GDP; 1.70A {Pyrococcus
horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A*
2dy9_A* 2dya_A*
Length = 160
Score = 267 bits (684), Expect = 8e-94
Identities = 75/152 (49%), Positives = 102/152 (67%), Gaps = 5/152 (3%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+T ++IKPD V RGL+GEII RFEKKG + G+K++ +DR AEKHYE+ KPFF +
Sbjct: 7 TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKA 66
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR---NIIHGS 117
LI+YIT PVV M+ EG V+ R + GAT+P +APGTIRGD + N+IH S
Sbjct: 67 LIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHAS 126
Query: 118 DSVESAQKEIALWF-PDGPINWQSSLHPWIYE 148
DS ESA++EI+L+F P+ + + W Y+
Sbjct: 127 DSKESAEREISLFFKPEELFEYPRAA-DWFYK 157
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A
{Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R
3pj9_A
Length = 144
Score = 265 bits (679), Expect = 3e-93
Identities = 64/148 (43%), Positives = 98/148 (66%), Gaps = 6/148 (4%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+T +IKPDG+++G++G+II RFE+KG ++L + + AE Y ++PFF
Sbjct: 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKD 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L++++ SGPVV M+ EGE V R I+GATNPAQ+A GTIR D A +N +HGSDS+
Sbjct: 62 LVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSL 121
Query: 121 ESAQKEIALWFPDGPINWQSSLHPWIYE 148
E+A+ EIA +F + + +H + Y+
Sbjct: 122 ENAKIEIAYFFRE------TEIHSYPYQ 143
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Length = 137
Score = 264 bits (677), Expect = 5e-93
Identities = 77/136 (56%), Positives = 100/136 (73%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+TF+MIKPDGV+RGLVGEI+ RFE+KGF + LKLM + + AE+HY + KPFF
Sbjct: 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPG 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+ +ITSGPVVAM+ EG GVV R ++GAT+P + PGTIRGD A N+IHGS ++
Sbjct: 61 LVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATL 120
Query: 121 ESAQKEIALWFPDGPI 136
E AQ+EIAL+F +
Sbjct: 121 EDAQREIALFFRPEEL 136
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase
nucleotide binding, ATP-binding, magnesium,
metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga
mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A*
3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A*
2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A*
3gpa_A* ...
Length = 146
Score = 264 bits (677), Expect = 8e-93
Identities = 56/141 (39%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT-VDRPFAEKHYEDLSSKPFFG 59
+++T ++IKPD +R LV EI+ R EKK F + +K + R E+HY++ S + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 60 SLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDS 119
+++ SGP++++++EG + R + G TNP SAPGTIRGDLA N+IH SDS
Sbjct: 66 DNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDS 125
Query: 120 VESAQKEIALWFPDGPINWQS 140
+SA EI++WFP+ + +
Sbjct: 126 EDSAVDEISIWFPETKMETDN 146
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer,
signaling protein,transferase; 1.62A {Escherichia coli}
Length = 142
Score = 262 bits (673), Expect = 2e-92
Identities = 60/136 (44%), Positives = 86/136 (63%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+TF +IKP+ V + ++G I RFE GF + G K++ + A Y + KPFF
Sbjct: 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDG 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+E++TSGP+V + EGE V+ R ++GATNPA + GT+R D A N HGSDSV
Sbjct: 62 LVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSV 121
Query: 121 ESAQKEIALWFPDGPI 136
ESA +EIA +F +G +
Sbjct: 122 ESAAREIAYFFGEGEV 137
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate,
transferase; 2.60A {Mycobacterium tuberculosis} SCOP:
d.58.6.1
Length = 136
Score = 262 bits (672), Expect = 3e-92
Identities = 75/135 (55%), Positives = 97/135 (71%), Gaps = 1/135 (0%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+T ++IKPDG++R L+GEII R E+KG ++ L+L TV A +HY + KPFFGS
Sbjct: 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGS 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDS 119
L+E+ITSGPVVA I EG + R + G T+P Q +APGTIRGD A+ T N++HGSDS
Sbjct: 62 LLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDS 121
Query: 120 VESAQKEIALWFPDG 134
ESAQ+EIALWFP
Sbjct: 122 AESAQREIALWFPGA 136
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition
state mimic, transition state analog, transferas; HET:
ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Length = 190
Score = 261 bits (669), Expect = 4e-91
Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 16/163 (9%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYE-----DLSSK 55
+++T ++KPDGV+RGL+G+++ RFE+ G + K++ VD A+KHY S+
Sbjct: 26 LQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSE 85
Query: 56 PFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR---- 111
+ SLI++I++ PV + EG ++ R + GAT P + PGTIRGD + + +
Sbjct: 86 AVWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNE 145
Query: 112 ------NIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIY 147
N+IH S + A +EI +WF D I N++ Y
Sbjct: 146 KGFSIYNVIHASANEADAMREIPIWFKDNEILNYKRDDECEHY 188
>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center
for infectious disease, S DAMP, niaid; HET: DA; 2.00A
{Burkholderia thailandensis} PDB: 4dut_A*
Length = 145
Score = 258 bits (662), Expect = 1e-90
Identities = 53/136 (38%), Positives = 84/136 (61%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+T +IKPD V + ++G+I RFE G + ++ + R AEK Y + +PFF
Sbjct: 7 LERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKD 66
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
L+E++ SGPV+ + EGE + R ++GAT+P ++ GTIR D A N +HGSD+
Sbjct: 67 LVEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAP 126
Query: 121 ESAQKEIALWFPDGPI 136
E+A+ EIA +FP+ +
Sbjct: 127 ETARVEIAFFFPEMNV 142
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A
{Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Length = 142
Score = 252 bits (646), Expect = 3e-88
Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 3/139 (2%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+T I++KPD +++G +G+I+ RF ++GF +K LK+ A + Y +PFF
Sbjct: 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQE 62
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNIIHGS 117
L+E+++SGPVVA + EGE +K R IIG T+ ++ AP +IR G+N IH S
Sbjct: 63 LVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHAS 122
Query: 118 DSVESAQKEIALWFPDGPI 136
DS ESAQ EI F I
Sbjct: 123 DSPESAQYEICFIFSGLEI 141
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin
fold, transferase; HET: PGE; 2.50A {Pyrobaculum
aerophilum} SCOP: d.58.6.1
Length = 195
Score = 224 bits (573), Expect = 2e-76
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 43/179 (24%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS------ 54
+E+T +++KPD V RGLV EII RF+K G + LK++ E+ Y
Sbjct: 15 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAG 74
Query: 55 ---------------------------KPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTI 87
+ +L++Y+TSGP V M+ +G V+ R +
Sbjct: 75 QKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKL 134
Query: 88 IGATNPAQSAPGTIRGDLAIVT----------GRNIIHGSDSVESAQKEIALWFPDGPI 136
+G T+P + PGTIRGD +I + N++H SDS A++EI WF + +
Sbjct: 135 VGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFREEEV 193
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.011
Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 44/134 (32%)
Query: 31 SLKGLKL--------MTVDR---PFAEK----HYEDLS-SKPFFGSLIEYITSGPVVAMI 74
SL GL L +D+ PF+E+ L + PF L+ P +I
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV-----PASDLI 439
Query: 75 WEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAI-----VTGRNIIHGSDSVESAQKEIAL 129
+ +VK + D+ I G ++ S S+ + I
Sbjct: 440 --NKDLVKNNVSFNAK-------------DIQIPVYDTFDGSDLRVLSGSIS---ERIVD 481
Query: 130 WFPDGPINWQSSLH 143
P+ W+++
Sbjct: 482 CIIRLPVKWETTTQ 495
Score = 30.0 bits (67), Expect = 0.26
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 7/30 (23%)
Query: 68 GPVVAMIWEGEGVVKTGRTIIGAT---NPA 94
G + +G GV R I+ T NP
Sbjct: 513 GVLTHRNKDGTGV----RVIVAGTLDINPD 538
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein
and GTPase, retinitis pigmentosa, GTP-binding,
lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens}
PDB: 3bh6_B* 2bx6_A
Length = 352
Score = 29.1 bits (64), Expect = 0.56
Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 22/105 (20%)
Query: 27 KKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRT 86
KGF L K +++ A++ + + + + + GPV+A+ + G+G V+ +
Sbjct: 261 GKGFFLVQTKEVSMKAEDAQRVFREKAPD-----FLPLLNKGPVIALEFNGDGAVEVCQL 315
Query: 87 IIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 131
I+ + S+S E+A ++ ++
Sbjct: 316 IVNEIFN-----------------GTKMFVSESKETASGDVDSFY 343
>3aqo_A Probable secdf protein-export membrane protein; periplasmic domain,
translocon, cell membrane, M protein transport,
translocation; 2.60A {Thermus thermophilus}
Length = 229
Score = 27.6 bits (62), Expect = 1.4
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 96 SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIAL 129
+AP IR AI G+ +I G SVE A EIAL
Sbjct: 180 TAP-VIRQ--AITGGQAVIEGLSSVEEAS-EIAL 209
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 27.3 bits (61), Expect = 1.9
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 69 PVVAMIWEGEGVVKTGRTIIGAT 91
P V +I V+ G + AT
Sbjct: 130 PAVEIISRLSRRVEKGSLVADAT 152
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 2.2
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 4/23 (17%)
Query: 119 SVESAQKEIALWFPD-GP---IN 137
+++ Q + L+ D P I
Sbjct: 21 ALKKLQASLKLYADDSAPALAIK 43
>3mol_A Heme acquisition protein hasap; hemophore, heme transport, H32A
mutation, holo protein, heme protein, transport protein;
HET: HEM; 1.20A {Pseudomonas aeruginosa} PDB: 3mom_A*
3mok_A 3ell_A
Length = 184
Score = 26.2 bits (57), Expect = 4.3
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 15/103 (14%)
Query: 51 DLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTG 110
+ PF GS ++ A I G+ +NP+ + G + I G
Sbjct: 45 GFNPGPFDGSQYALKSTASDAAFIAGGD------LHYTLFSNPSHTLWGKLDS---IALG 95
Query: 111 RNIIHGSDSVESAQKEIALWFPDGPI------NWQSSLHPWIY 147
+ G+ S A + F + + ++H +Y
Sbjct: 96 DTLTGGASSGGYALDSQEVSFSNLGLDSPIAQGRDGTVHKVVY 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.422
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,361,107
Number of extensions: 137688
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 43
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)