BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032048
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 169 bits (429), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 94/123 (76%), Gaps = 1/123 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M AHG KNLVFSSSATVYG P+ +P E P NPYG++K FIEE+ RD+ ++D W
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
++LLRYFNP GAH SG IGEDP+GIPNNLMP+V+QVA+GRR L VFG DY T+DGTGV
Sbjct: 179 NVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238
Query: 120 SCF 122
+
Sbjct: 239 RDY 241
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 169 bits (429), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 94/123 (76%), Gaps = 1/123 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M AHG KNLVFSSSATVYG P+ +P E P NPYG++K FIEE+ RD+ ++D W
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
++LLRYFNP GAH SG IGEDP+GIPNNLMP+V+QVA+GRR L VFG DY T+DGTGV
Sbjct: 179 NVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238
Query: 120 SCF 122
+
Sbjct: 239 RDY 241
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 93/123 (75%), Gaps = 1/123 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M AHG KNLVFSSSATVYG P+ +P E P NPYG++K FIEE+ RD+ ++D W
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
+LLRYFNP GAH SG IGEDP+GIPNNLMP+V+QVA+GRR L VFG DY T+DGTGV
Sbjct: 179 NAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238
Query: 120 SCF 122
+
Sbjct: 239 RDY 241
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 162 bits (410), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 88/122 (72%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWK 60
M K +VFSSSATVYG P+ P E FPL A NPYG+TKL E+I RDV +D W+
Sbjct: 116 MRERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQILRDVEAADPSWR 175
Query: 61 IILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVS 120
+ LRYFNPVGAH SG IGEDP GIPNNLMP+V QVAVG+ +L VFG+DY T DGTGV
Sbjct: 176 VATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVR 235
Query: 121 CF 122
+
Sbjct: 236 DY 237
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 156 bits (395), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSSSATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 SCF 122
+
Sbjct: 231 RDY 233
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 156 bits (394), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSSSATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 SCF 122
+
Sbjct: 231 RDY 233
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 155 bits (393), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSSSATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 SCF 122
+
Sbjct: 231 RDY 233
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 155 bits (392), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSAATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 SCF 122
+
Sbjct: 231 RDY 233
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 155 bits (391), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSAATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 SCF 122
+
Sbjct: 231 RDY 233
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 155 bits (391), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 SCF 122
+
Sbjct: 231 RDY 233
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 155 bits (391), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSSSATVYG +P E FP +P+G++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 SCF 122
+
Sbjct: 231 RDY 233
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS ATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSVATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 SCF 122
+
Sbjct: 231 RDY 233
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/123 (56%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +P+G++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 SCF 122
+
Sbjct: 231 RDY 233
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 153 bits (387), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 69/123 (56%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +P+G++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 SCF 122
+
Sbjct: 231 RDY 233
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 152 bits (383), Expect = 8e-38, Method: Composition-based stats.
Identities = 70/124 (56%), Positives = 87/124 (70%), Gaps = 5/124 (4%)
Query: 1 MAAHGCKNLVFSSSATVYG----WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSD 56
M + VFSSSATVYG +P ++P EE PL NPYG TK IE I D++ SD
Sbjct: 122 MQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD 181
Query: 57 SE-WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKD 115
+ WK +LRYFNP+GAHPSG IGEDP GIPNNL+P++ QVAVGRR +L +FG DY ++D
Sbjct: 182 KKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRD 241
Query: 116 GTGV 119
GT +
Sbjct: 242 GTPI 245
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 66/115 (57%), Gaps = 5/115 (4%)
Query: 9 LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFN 68
+FSS+A YG V TEE N YG TKL IE++ + S + + RYFN
Sbjct: 113 FIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLH-WYSQASNLRYKIFRYFN 171
Query: 69 PVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVSCFR 123
GA P+G IGED R +L+P V QVA+G+R ++ +FG DY+T DGT C R
Sbjct: 172 VAGATPNGIIGEDHRP-ETHLIPLVLQVALGQREKIMMFGDDYNTPDGT---CIR 222
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 66/138 (47%), Gaps = 22/138 (15%)
Query: 1 MAAHGCKNLVFSSSATVYGWP---KVVPCTEEFPLEAM----NPYGRTKLFIEEICRDVH 53
M H C ++FSSSA ++G P V E + A +PYG +KL E + RD
Sbjct: 131 MLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCA 190
Query: 54 RSDSEWKIILLRYFNPVGAHPSGKIGEDPRG----IPNNLMPFVTQVAVGRR-------- 101
+ K I LRYFN GAH G IGE +G IP L ++ +A +R
Sbjct: 191 EAYG-IKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDAS 249
Query: 102 --PELTVFGTDYSTKDGT 117
+ +FGTDY T DGT
Sbjct: 250 TDKRMPIFGTDYPTPDGT 267
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 2 AAHGCKNLVFSSSATVY--GWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEW 59
+A G + VF+SS VY P+ +P TE+ PL +PYG TKL EE+ R H+
Sbjct: 114 SAAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLLGEELVR-FHQRSGAM 172
Query: 60 KIILLRY 66
+ ++LR+
Sbjct: 173 ETVILRF 179
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKL----FIEEICRDVHRSD 56
M G +VF+S++TVYG KV+P E++P ++ YG +KL IE C H D
Sbjct: 101 MRKAGVSRIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYC---HTFD 157
Query: 57 SE-WKIILLRYFNPVG 71
+ W + R+ N +G
Sbjct: 158 MQAW---IYRFANVIG 170
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G + +VF+SS+TVYG V+P EE P + ++ YG K E +C R + + +
Sbjct: 100 GVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGV-RCLAV 158
Query: 65 RYFNPVG 71
RY N VG
Sbjct: 159 RYANVVG 165
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G + +VF+SS+TVYG V+P EE P + ++ YG K E +C R + + +
Sbjct: 104 GVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGV-RCLAV 162
Query: 65 RYFNPVG 71
RY N VG
Sbjct: 163 RYANVVG 169
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 4 HGCKN-----LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSE 58
H KN +++S++ YG +P EE ++PY TK ++ EI V+
Sbjct: 149 HAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYG 207
Query: 59 WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMP 91
+K I LRYFN G +DP G ++P
Sbjct: 208 FKTIGLRYFNVFGRR------QDPNGAYAAVIP 234
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 4 HGCKN-----LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSE 58
H KN +++S++ YG +P EE ++PY TK ++ EI V+
Sbjct: 136 HAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYG 194
Query: 59 WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMP 91
+K I LRYFN G +DP G ++P
Sbjct: 195 FKTIGLRYFNVFGRR------QDPNGAYAAVIP 221
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 4 HGCKN-----LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSE 58
H KN +++S++ YG +P EE ++PY TK ++ EI V+
Sbjct: 136 HAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYG 194
Query: 59 WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMP 91
+K I LRYFN G +DP G ++P
Sbjct: 195 FKTIGLRYFNVFGRR------QDPNGAYAAVIP 221
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 4 HGCKN-----LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSE 58
H KN +++S++ YG +P EE ++PY TK ++ EI V+
Sbjct: 130 HAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYG 188
Query: 59 WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMP 91
+K I LRYFN G +DP G ++P
Sbjct: 189 FKTIGLRYFNVFGRR------QDPNGAYAAVIP 215
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G +V S+ VYG +P E+ PL +PY +K+ +E + R+ ++ ++
Sbjct: 110 GVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIV 169
Query: 65 RYFNPVG 71
R+FN G
Sbjct: 170 RFFNVYG 176
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 6 CKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLR 65
++ +++S++ YG +P E+ + ++PY TK ++ E+ DV + I LR
Sbjct: 145 VQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTK-YVNELYADVFSRCYGFSTIGLR 203
Query: 66 YFNPVGAHPSGKIGEDPRGIPNNLMP 91
YFN G +DP G ++P
Sbjct: 204 YFNVFGRR------QDPNGAYAAVIP 223
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRS 55
G +V S+ VYG TE PLE +PY +K + + R HR+
Sbjct: 118 GVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRT 168
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 6 CKNLVFSSSATVYGW--PKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIIL 63
C+ L SS YG P+ P +EE L M+PYG +K + + R ++ II
Sbjct: 119 CRILTIGSSEE-YGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYG-MDIIH 176
Query: 64 LRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQ 95
R FN +G P + FVTQ
Sbjct: 177 TRTFNHIG--------------PGQSLGFVTQ 194
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRS 55
G +V S+ VYG TE PLE +PY +K + + R HR+
Sbjct: 118 GVGRVVHVSTDEVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRT 168
>pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar
Epimerase From Agrobacterium Tumefaciens
Length = 342
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 8 NLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHR 54
+VF+SS V+G P P +EF + YG K E + D R
Sbjct: 135 RVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYSR 181
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 4 HGCKNLVFSSSATVYGWPKVVPCT-------EEFPLEAMNPYGRTKLFIEEICRDVHRS 55
+G K ++SSA +Y K + T + +P E + YG KL EE+C+ ++
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKD 193
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 4 HGCKNLVFSSSATVYGWPKVVPCT-------EEFPLEAMNPYGRTKLFIEEICRDVHRS 55
+G K ++SSA +Y K + T + +P E + YG KL EE+C+ ++
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKD 193
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 4 HGCKNLVFSSSATVYGWPKVVPCT-------EEFPLEAMNPYGRTKLFIEEICRDVHRS 55
+G K ++SSA +Y K + T + +P E + YG +L EE+C+ ++
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKD 193
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 9 LVFSSSATVYGWPKVVPCTEEF-----PLEAMNPYGRTKLFIEEICRDVHRSDSEWKIIL 63
L+ +S++ VYG P+V P +E++ P+ Y K E +C + + ++ +
Sbjct: 114 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEG-VEVRV 172
Query: 64 LRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTK 114
R FN G P + D R + N F+ Q G LTV+G+ T+
Sbjct: 173 ARIFNTFG--PRMHMN-DGRVVSN----FILQALQGE--PLTVYGSGSQTR 214
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 4 HGCKNLVFSSSATVYGWPKVVPCT-------EEFPLEAMNPYGRTKLFIEEICRDVHRS 55
+G K ++SSA +Y K + T + +P E + +G KL EE+C+ ++
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKD 193
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 9 LVFSSSATVYGWPKVVPCTEEF-----PLEAMNPYGRTKLFIEEICRDVHRSDSEWKIIL 63
L+ +S++ VYG P+V P +E++ P+ Y K E C + + ++ +
Sbjct: 136 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEG-VEVRV 194
Query: 64 LRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTK 114
R FN G D R + N F+ Q G LTV+G+ T+
Sbjct: 195 ARIFNTFGPRXHXN---DGRVVSN----FILQALQGE--PLTVYGSGSQTR 236
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 12 SSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLF 44
+S++ +YG + +P E P +PYG KL+
Sbjct: 154 ASTSELYGKVQEIPQKETTPFYPRSPYGAAKLY 186
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 12 SSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLF 44
+S++ ++G + +P TE+ P +PY KLF
Sbjct: 125 ASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLF 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,879,098
Number of Sequences: 62578
Number of extensions: 203722
Number of successful extensions: 520
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 45
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)