Query 032049
Match_columns 148
No_of_seqs 118 out of 1063
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_Q RP61R, 40S ribosomal pr 100.0 9.9E-64 3.4E-68 382.4 15.0 140 9-148 4-143 (143)
2 2xzm_I RPS16E; ribosome, trans 100.0 7.4E-62 2.5E-66 372.6 13.4 142 6-148 3-145 (145)
3 2zkq_i 40S ribosomal protein S 100.0 7.9E-63 2.7E-67 378.5 5.3 146 3-148 1-146 (146)
4 3j20_K 30S ribosomal protein S 100.0 3.1E-59 1.1E-63 354.6 13.1 133 9-148 1-135 (135)
5 3iz6_I 40S ribosomal protein S 100.0 9.5E-64 3.2E-68 384.6 -15.7 141 8-148 9-149 (149)
6 2vqe_I 30S ribosomal protein S 100.0 3.3E-57 1.1E-61 340.8 8.9 125 11-148 3-128 (128)
7 3r8n_I 30S ribosomal protein S 100.0 6.8E-57 2.3E-61 338.7 3.1 125 11-148 2-127 (127)
8 3bbn_I Ribosomal protein S9; s 100.0 6.6E-54 2.3E-58 341.3 6.4 127 9-148 69-197 (197)
9 4f4c_A Multidrug resistance pr 84.4 0.78 2.7E-05 44.5 4.2 96 18-116 1117-1262(1321)
10 2x36_A LON protease homolog, m 64.5 6.2 0.00021 30.7 3.8 69 29-97 43-115 (207)
11 1rre_A ATP-dependent protease 64.0 14 0.00046 28.5 5.6 72 24-97 30-107 (200)
12 3m6a_A ATP-dependent protease 56.7 7.3 0.00025 33.9 3.2 74 24-97 373-450 (543)
13 3oz2_A Digeranylgeranylglycero 52.4 7.4 0.00025 30.4 2.3 22 66-89 3-24 (397)
14 1xhk_A Putative protease LA ho 50.7 22 0.00075 26.8 4.7 33 65-97 77-109 (187)
15 3kkj_A Amine oxidase, flavin-c 50.5 7 0.00024 27.2 1.7 19 72-90 5-23 (336)
16 4gcm_A TRXR, thioredoxin reduc 41.7 16 0.00053 28.1 2.7 24 67-90 4-27 (312)
17 1z0w_A Putative protease LA ho 40.8 12 0.00041 28.9 1.9 63 32-97 44-107 (207)
18 4gde_A UDP-galactopyranose mut 39.2 17 0.00058 29.9 2.6 22 68-89 9-30 (513)
19 1hyu_A AHPF, alkyl hydroperoxi 34.3 47 0.0016 28.2 4.7 21 67-89 212-232 (521)
20 3k1j_A LON protease, ATP-depen 29.5 1E+02 0.0036 26.7 6.2 62 31-97 434-498 (604)
21 4b1b_A TRXR, thioredoxin reduc 29.0 29 0.001 30.3 2.6 24 66-89 39-62 (542)
22 3mx7_A FAS apoptotic inhibitor 28.1 49 0.0017 22.8 3.1 32 12-44 53-89 (90)
23 3dme_A Conserved exported prot 27.8 36 0.0012 26.2 2.7 20 71-90 6-25 (369)
24 4fk1_A Putative thioredoxin re 27.7 32 0.0011 26.4 2.3 22 66-89 5-26 (304)
25 2oln_A NIKD protein; flavoprot 27.5 35 0.0012 27.1 2.6 20 71-90 6-25 (397)
26 2p0g_A Selenoprotein W-related 25.9 49 0.0017 23.2 2.8 22 22-43 35-59 (105)
27 3nix_A Flavoprotein/dehydrogen 25.2 41 0.0014 26.8 2.6 19 71-89 7-25 (421)
28 3cgv_A Geranylgeranyl reductas 25.0 42 0.0014 26.3 2.6 21 67-89 4-24 (397)
29 1ryi_A Glycine oxidase; flavop 24.1 45 0.0015 26.1 2.6 22 69-90 17-38 (382)
30 3fpz_A Thiazole biosynthetic e 23.9 26 0.0009 27.4 1.2 25 66-92 64-88 (326)
31 2qa2_A CABE, polyketide oxygen 23.0 46 0.0016 28.2 2.6 24 67-90 10-33 (499)
32 3rp8_A Flavoprotein monooxygen 22.4 44 0.0015 26.7 2.3 22 66-89 22-43 (407)
33 3g3e_A D-amino-acid oxidase; F 22.3 47 0.0016 25.9 2.4 21 71-91 2-22 (351)
34 1gyx_A YDCE, B1461, hypothetic 22.0 1.1E+02 0.0039 19.0 3.9 30 70-99 3-33 (76)
35 2gag_B Heterotetrameric sarcos 22.0 52 0.0018 25.9 2.6 21 70-90 22-42 (405)
36 4hb9_A Similarities with proba 21.9 46 0.0016 26.0 2.3 20 70-89 2-21 (412)
37 3dex_A SAV_2001; alpha-beta pr 21.8 63 0.0022 22.8 2.7 24 20-43 42-68 (107)
38 2v8p_A 4-diphosphocytidyl-2-C- 21.7 2.7E+02 0.0092 21.2 7.8 34 66-100 80-116 (271)
39 2gf3_A MSOX, monomeric sarcosi 21.7 54 0.0019 25.6 2.7 20 71-90 5-24 (389)
40 1c0p_A D-amino acid oxidase; a 21.2 49 0.0017 25.9 2.3 19 71-89 8-26 (363)
41 2oka_A Hypothetical protein; P 21.0 40 0.0014 23.6 1.6 21 23-43 38-61 (104)
42 2i9n_A MHB4A peptide; beta-hai 20.5 55 0.0019 18.2 1.7 16 76-91 14-29 (33)
43 1rp0_A ARA6, thiazole biosynth 20.1 61 0.0021 24.9 2.6 21 67-89 39-59 (284)
44 2uzz_A N-methyl-L-tryptophan o 20.1 52 0.0018 25.6 2.2 20 71-90 4-23 (372)
No 1
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=100.00 E-value=9.9e-64 Score=382.39 Aligned_cols=140 Identities=69% Similarity=1.123 Sum_probs=137.1
Q ss_pred CceEEEeeeccceEEEEEEEeCceeEEEcCeeccccCCHHHHHHHHhHHHHhcccccceecEEEEEecCCccchHHHHHH
Q 032049 9 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 88 (148)
Q Consensus 9 ~~~v~~~GrRKta~A~v~l~~G~G~I~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~i~V~GGG~sgQa~AIr~ 88 (148)
.++++++||||||+|+|+|.||+|+|+|||+|+++||+++++++|++||.+++.+.+++|||+|+|+|||.||||+||||
T Consensus 4 ~~~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~ 83 (143)
T 3u5c_Q 4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQ 83 (143)
T ss_dssp CCEEEEEECSTTCEEEEEEEECSCCEEETTEETTTCSSCSTHHHHHHHHHHTCSTTSTTEEEEEEEESSCHHHHHHHHHH
T ss_pred cceEEEeccCcceEEEEEEEeCceEEEECCCcHHHHChHHHHHHHHHHHHHHhhhccCceeEEEEEECCCEecHHhHHHH
Confidence 57899999999999999999999999999999999999889999999999999877899999999999999999999999
Q ss_pred HHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCCcccccCcccccC
Q 032049 89 SIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 148 (148)
Q Consensus 89 aiAraL~~~~~~~~~~~~~~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~q~SkR 148 (148)
||||||++|+++|+||+.++.||++|++||+||||+|||+|||||||++|||++||||||
T Consensus 84 aIArAL~~~~~~~vd~~~r~~LK~~l~~yD~glLtrD~R~~ErKK~G~~kARk~~Q~SkR 143 (143)
T 3u5c_Q 84 AIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR 143 (143)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSTTSCCCCCCCCCCSSSSSSSCCCCCCCC
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHhccCCCCcCCCcccccCCCCCcccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 2
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=100.00 E-value=7.4e-62 Score=372.59 Aligned_cols=142 Identities=61% Similarity=1.023 Sum_probs=135.4
Q ss_pred CCCCceEEEeeeccceEEEEEEEeCceeEEEcCeeccccC-CHHHHHHHHhHHHHhcccccceecEEEEEecCCccchHH
Q 032049 6 AGPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVE-PEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIY 84 (148)
Q Consensus 6 ~~~~~~v~~~GrRKta~A~v~l~~G~G~I~INg~~l~~y~-~~~~r~~i~~PL~~~~~~~~~~~di~i~V~GGG~sgQa~ 84 (148)
..+++.++++||||||+|+|+|.||+|+|+|||+|++ || ++.++++|++||.+++.+.+++|||+|+|+|||.||||+
T Consensus 3 ~~~~~~~~~~GrRKtAvArv~l~~G~G~i~VNg~~l~-yf~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~ 81 (145)
T 2xzm_I 3 QQKPQLVQTFGRKKNAVAVASVRPGKGLLKVNGSPID-MINPQILQAKIYEPILLLGQQKFANLDIRIRVRGSGYTSQVY 81 (145)
T ss_dssp CCCCSCEEEEEEETTEEEEEEEEESSCEEEESSSBGG-GCSSTTTHHHHHHHHHHHCHHHHHHEEEEEEECCSSHHHHHH
T ss_pred CCCccEEEEEeECCCEEEEEEEEeCceEEEECCEeHH-HcCcHHHHHHHHHHHHHhChhhhCceeEEEEEEcCCeecHHH
Confidence 3567899999999999999999999999999999999 65 578999999999999954569999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCCcccccCcccccC
Q 032049 85 AIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 148 (148)
Q Consensus 85 AIr~aiAraL~~~~~~~~~~~~~~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~q~SkR 148 (148)
||||||||||++|+++|+||+.++.||++|++||+||||+|||++||||||++|||++||||||
T Consensus 82 AiR~aIArAL~~~~~k~~d~~~r~~Lk~~l~~ydrglLtrD~R~~ErKK~G~~kARk~~Q~SkR 145 (145)
T 2xzm_I 82 AIRQALSKGIVAYHAKYVDENSKREIKEQLMQYDRSLLVADPRRMEPKKCGGRGARSKMQKAYR 145 (145)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCSTTTSCBCCCCCCCCTTSSSSSCCCCCCCC
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcCCCcCcCCCcccccCcCCCcccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 3
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=7.9e-63 Score=378.45 Aligned_cols=146 Identities=75% Similarity=1.231 Sum_probs=132.5
Q ss_pred ccCCCCCceEEEeeeccceEEEEEEEeCceeEEEcCeeccccCCHHHHHHHHhHHHHhcccccceecEEEEEecCCccch
Q 032049 3 TAKAGPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQ 82 (148)
Q Consensus 3 ~~~~~~~~~v~~~GrRKta~A~v~l~~G~G~I~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~i~V~GGG~sgQ 82 (148)
|++.+++++++++||||||+|+|+|.||+|+|+|||+|+++|.++.++++|++||.+++.+.+++|||+|+|+|||.|||
T Consensus 1 ~~~~~~~~~~~~~GrRKtAvArv~l~~G~G~i~VNg~~leyf~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQ 80 (146)
T 2zkq_i 1 MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQ 80 (146)
T ss_dssp -------CCEEECCBCSSCEEEEEEEESSSCEEETTEEHHHHSTTSCCGGGGHHHHHTSSCTTSSEEEEEEEESSCHHHH
T ss_pred CCCCCCCceEEEEeeCCCeEEEEEEEcCCeeEEEcCcCHHHcCcHHHHHHHHHHHHHhCccccCceEEEEEEEcCCeehH
Confidence 56678899999999999999999999999999999999954445788999999999999766799999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCCcccccCcccccC
Q 032049 83 IYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 148 (148)
Q Consensus 83 a~AIr~aiAraL~~~~~~~~~~~~~~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~q~SkR 148 (148)
|+||||||||||++|+++|+||+.++.||++|++||+||||+|||++||||||++|||++||||||
T Consensus 81 A~AiR~aIArAL~~~~~k~~d~~~r~~Lk~~~~~ydrglLtrD~R~~ErKK~G~~kARk~~Q~SkR 146 (146)
T 2zkq_i 81 IYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146 (146)
T ss_dssp HHHHHHHHHHHHHHHCTTCTTSSSCCCCCSCSSSCCCCCC-CCCCCCCCCCTTSTTSSCCCCCSCC
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcCCCcccCCCcccccCcCCCcccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999998
No 4
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.1e-59 Score=354.57 Aligned_cols=133 Identities=45% Similarity=0.795 Sum_probs=125.4
Q ss_pred CceEEEeeeccceEEEEEEEeCceeEEEcCeeccccCCHHHHHHHHhHHHHhcccccceecEEEEEecCCccchHHHHHH
Q 032049 9 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 88 (148)
Q Consensus 9 ~~~v~~~GrRKta~A~v~l~~G~G~I~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~i~V~GGG~sgQa~AIr~ 88 (148)
|++++++||||||+|+|+|.||+|+|+|||+|+++|++++++++|++||.+++.+.+++|||+|+|+|||.||||+||||
T Consensus 1 m~~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~~~~r~~i~~Pl~l~~~~~~~~~Di~v~V~GGG~~gQA~AiR~ 80 (135)
T 3j20_K 1 MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARM 80 (135)
T ss_dssp CCCEEEEEEETTEEEEEEEEESSCCEEETTEEGGGCSCSHHHHHHSHHHHHHCHHHHHHEEEEEEEECSCHHHHHHHHHH
T ss_pred CcEEEEeCcCccEEEEEEEEeCceEEEECCeeHHHHChHHHHHHhhCChhhcchhhcccccEEEEEECCCEechHhHHHH
Confidence 57899999999999999999999999999999999999999999999999998555699999999999999999999999
Q ss_pred HHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCC--cccccCcccccC
Q 032049 89 SIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGG--RGARARFQKSYR 148 (148)
Q Consensus 89 aiAraL~~~~~~~~~~~~~~~Lk~~l~~yd~glLt~D~R~~ERKK~G~--~kARk~~q~SkR 148 (148)
||||||++|++ + ++||+.|++||+||||+|||++||||||+ +|||++||||||
T Consensus 81 aIarAL~~~~~---~----~~lr~~l~~~d~glLtrD~R~~ErKK~G~~~~kARk~~Q~SkR 135 (135)
T 3j20_K 81 AIARALVEWTG---D----MSLKEKFMKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135 (135)
T ss_dssp HHHHHHHHHHC---C----HHHHHHHHHHCSTTTCCCSCCCCCCCCCSSCSSSSCCCCCCCC
T ss_pred HHHHHHHHhcc---C----HHHHHHHHhccCCCccCCCccccccccCCCCCCCccccccccC
Confidence 99999999864 3 36888888899999999999999999999 999999999998
No 5
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.5e-64 Score=384.64 Aligned_cols=141 Identities=82% Similarity=1.342 Sum_probs=123.2
Q ss_pred CCceEEEeeeccceEEEEEEEeCceeEEEcCeeccccCCHHHHHHHHhHHHHhcccccceecEEEEEecCCccchHHHHH
Q 032049 8 PVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIR 87 (148)
Q Consensus 8 ~~~~v~~~GrRKta~A~v~l~~G~G~I~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~i~V~GGG~sgQa~AIr 87 (148)
..++++++||||||+|+|+|.||+|+|+|||+|+++||+++++++|++||.+++.+.+++|||+|+|+|||.||||+|||
T Consensus 9 ~~~~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~~~~r~~v~~Pl~l~~~~~~~~~DI~v~V~GGG~sgQA~AiR 88 (149)
T 3iz6_I 9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIR 88 (149)
T ss_dssp ---------------CCCCCCCCCCSSSEECCCCCCSSCCEEESSSBHHHHTCSCHHHHHHHTTTTTTSCSTTCCEEECE
T ss_pred CccEEEEeccCcceEEEEEEEeCcEEEEECCCcHHHHChHHHHHHHHHHHHHHhHhccCceeEEEEEeCCCeecHHHHHH
Confidence 34789999999999999999999999999999999999988899999999999987678999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCCcccccCcccccC
Q 032049 88 QSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 148 (148)
Q Consensus 88 ~aiAraL~~~~~~~~~~~~~~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~q~SkR 148 (148)
|||||||++|+++|+||+.++.||++|++||+||||+|||+|||||||++|||++||||||
T Consensus 89 ~gIArALv~~~~~~vd~~~r~~LK~~l~~yD~glLtrD~R~~ERKK~G~~kARk~~Q~SkR 149 (149)
T 3iz6_I 89 QAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149 (149)
T ss_dssp ESSCTTTHHHHHHHHHHHHHHHHCSSTHHHHTTTCCCCCCCCSCCCCCTTBSSSSSBCSCC
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHhccCCCCcCCCcccccCCCCCcccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999998
No 6
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=100.00 E-value=3.3e-57 Score=340.79 Aligned_cols=125 Identities=33% Similarity=0.467 Sum_probs=118.1
Q ss_pred eEEEeeeccceEEEEEEEeCceeEEEcCeeccccCC-HHHHHHHHhHHHHhcccccceecEEEEEecCCccchHHHHHHH
Q 032049 11 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQS 89 (148)
Q Consensus 11 ~v~~~GrRKta~A~v~l~~G~G~I~INg~~l~~y~~-~~~r~~i~~PL~~~~~~~~~~~di~i~V~GGG~sgQa~AIr~a 89 (148)
.++++||||||+|+|+|.||+|+|+|||+|+++||+ +.++++|++||.+++. +++|||+|+|+|||.||||+|||||
T Consensus 3 ~~~~~GrRKtavArv~l~~G~G~i~VNg~~l~~yf~~~~~r~~v~~Pl~~~~~--~~~~Di~v~V~GGG~sgQA~AiR~g 80 (128)
T 2vqe_I 3 QYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDA--LGRFDAYITVRGGGKSGQIDAIKLG 80 (128)
T ss_dssp CEEECCEETTEEEEEEEEESSCCEEESSSBHHHHSSSCSSGGGGGHHHHHHTC--STTEEEEEEEESSCHHHHHHHHHHH
T ss_pred ccEEeCcCCCEEEEEEEEcCceEEEECCCcHHHHcCCHHHHHHHHhHHHHHcc--cCceeEEEEEEcCCeehHHHHHHHH
Confidence 468999999999999999999999999999999885 6789999999999986 4999999999999999999999999
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCCcccccCcccccC
Q 032049 90 IAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 148 (148)
Q Consensus 90 iAraL~~~~~~~~~~~~~~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~q~SkR 148 (148)
|||||++| ||+.++.||++ ||||+|||++||||||++|||++||||||
T Consensus 81 IarAL~~~-----~~~~r~~Lk~~------glLtrD~R~~ErKK~G~~kARk~~Q~SkR 128 (128)
T 2vqe_I 81 IARALVQY-----NPDYRAKLKPL------GFLTRDARVVERKKYGKHKARRAPQYSKR 128 (128)
T ss_dssp HHHHHHHH-----CGGGHHHHTTT------TTTSCBCCCCCCCCSSSSBTTBCCCCCCC
T ss_pred HHHHHHHH-----CHHHHHHHHHC------CCccCCccccCcCcCCCcccccccccccC
Confidence 99999998 77778888876 99999999999999999999999999998
No 7
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=100.00 E-value=6.8e-57 Score=338.68 Aligned_cols=125 Identities=36% Similarity=0.481 Sum_probs=117.8
Q ss_pred eEEEeeeccceEEEEEEEeCceeEEEcCeeccccCC-HHHHHHHHhHHHHhcccccceecEEEEEecCCccchHHHHHHH
Q 032049 11 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQS 89 (148)
Q Consensus 11 ~v~~~GrRKta~A~v~l~~G~G~I~INg~~l~~y~~-~~~r~~i~~PL~~~~~~~~~~~di~i~V~GGG~sgQa~AIr~a 89 (148)
..+++||||||+|+|+|.||+|+|+|||+|+++||+ +.++++|++||.+++. +++|||+|+|+|||.||||+|||||
T Consensus 2 ~~~~~GrRKtavArv~l~~G~G~i~VNg~~l~~yf~~~~~r~~v~~Pl~~~~~--~~~~Di~v~V~GGG~~gQa~Air~a 79 (127)
T 3r8n_I 2 QYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDM--VEKLDLYITVKGGGISGQAGAIRHG 79 (127)
T ss_dssp CEEECCCCTTCEEEEEEEESCSCEEETTBCSTTTTTTSTTTTTTTGGGSSSCC--SSSEEEEEEEESSCHHHHHHHHHHH
T ss_pred cceeECCCeeEEEEEEEEeCcEEEEECCEeHHHHcCCHHHHHHHHHHHHHhCc--cCccceEEEEECCCeecHHHHHHHH
Confidence 478999999999999999999999999999999887 6789999999999985 5999999999999999999999999
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCCcccccCcccccC
Q 032049 90 IAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 148 (148)
Q Consensus 90 iAraL~~~~~~~~~~~~~~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~q~SkR 148 (148)
|||||++| ||++++.||+. ||||+|||++||||||++|||++||||||
T Consensus 80 IarAL~~~-----d~~~r~~Lk~~------glLtrD~R~~ErKK~G~~kARk~~Q~SkR 127 (127)
T 3r8n_I 80 ITRALMEY-----DESLRSELRKA------GFVTRDARQVERKKVGLRKARRRPQFSKR 127 (127)
T ss_dssp HHTTTTTT-----CSSSTTTTTTT------TTTSCCCCCCCCCCTTSSBTTBCCCCCCC
T ss_pred HHHHHHHH-----CHHHHHHHHHC------CCcccCCcccccCcCCCccccccccccCC
Confidence 99999997 77777778875 99999999999999999999999999998
No 8
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=6.6e-54 Score=341.32 Aligned_cols=127 Identities=29% Similarity=0.324 Sum_probs=117.2
Q ss_pred CceEEEeeeccceEEEEEEEeCceeEEEcCeeccccCC--HHHHHHHHhHHHHhcccccceecEEEEEecCCccchHHHH
Q 032049 9 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEP--EILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAI 86 (148)
Q Consensus 9 ~~~v~~~GrRKta~A~v~l~~G~G~I~INg~~l~~y~~--~~~r~~i~~PL~~~~~~~~~~~di~i~V~GGG~sgQa~AI 86 (148)
.+.++++||||||+|+|+|.||+|+|+|||+|+++||+ ..++++|++||.+++.+ ++|||+|+|+|||.||||+||
T Consensus 69 ~~~~~~tGRRKtAvArV~l~~G~G~I~VNg~~l~~YF~~~~~~~~~v~~PL~l~~~~--~k~DI~v~V~GGG~sGQA~AI 146 (197)
T 3bbn_I 69 AQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYE--TNYDVFVKAHGGGLSGQAQAI 146 (197)
T ss_dssp --CBCCCCEETTEEEEEEEEESSCCEEETTEEHHHHSCSCCGGGTTTSHHHHTTTCT--TTEEEEEEEESSCHHHHHHHH
T ss_pred ccEEEEEeeCCceEEEEEEEcCceeEEECCCcHHHHcCccHHHHHHHHHHHHHhCcc--CceeEEEEEecCCeehHHHHH
Confidence 35678999999999999999999999999999999985 34457899999999965 899999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCCcccccCcccccC
Q 032049 87 RQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 148 (148)
Q Consensus 87 r~aiAraL~~~~~~~~~~~~~~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~q~SkR 148 (148)
||||||||+.| |++.++.||+. ||||+|||++||||||++||||+||||||
T Consensus 147 R~gIARALv~~-----~~~~r~~LK~~------GlLTrD~R~~ERKK~G~kkARk~~Q~SKR 197 (197)
T 3bbn_I 147 SLGVARALLKV-----SASHRAPLKQE------GLLTRDSRIVERKKPGLKKARKAPQFSKR 197 (197)
T ss_dssp HHHHHHHTTTS-----CGGGSHHHHTT------TCSSCCCCCCCCCCTTSSSTTCCCCCCCC
T ss_pred HHHHHHHHHHH-----CHHHHHHHHHC------CCccCCCcccccCcCCcccccccccccCC
Confidence 99999999997 67788889986 99999999999999999999999999998
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.43 E-value=0.78 Score=44.47 Aligned_cols=96 Identities=29% Similarity=0.357 Sum_probs=56.0
Q ss_pred ccceEEEEEE---EeCceeEEEcCeeccccCCH------------------HHHH--------------HHHhHHHHhcc
Q 032049 18 KKTAVAVTYC---KRGRGLIKINGCPIELVEPE------------------ILRF--------------KAYEPILLLGR 62 (148)
Q Consensus 18 RKta~A~v~l---~~G~G~I~INg~~l~~y~~~------------------~~r~--------------~i~~PL~~~~~ 62 (148)
=|++.+...+ .|-+|.|.|||.++.++... +.|+ +|.+.+..++.
T Consensus 1117 GKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l 1196 (1321)
T 4f4c_A 1117 GKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANI 1196 (1321)
T ss_dssp STTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCC
Confidence 3555544333 25689999999998654221 2232 34444444432
Q ss_pred cc----c-ceecEEEEEecCCcc-chHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhh
Q 032049 63 HR----F-AGVDMRIRVKGGGHT-SQIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVR 116 (148)
Q Consensus 63 ~~----~-~~~di~i~V~GGG~s-gQa~AIr~aiAraL~~~~~~---------~~~~~~~~~Lk~~l~~ 116 (148)
.. + +.||-.|.-+|..+| ||.+ |+||||||+.- ++ -.|++....+.+.|.+
T Consensus 1197 ~~~I~~Lp~GldT~vge~G~~LSgGQrQ--riaiARAllr~-~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1197 HNFIAELPEGFETRVGDRGTQLSGGQKQ--RIAIARALVRN-PKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp HHHHHTSTTTTCSEETTTSCSSCHHHHH--HHHHHHHHHSC-CSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred hHHHHcCcCCCCCEecCCCcccCHHHHH--HHHHHHHHHhC-CCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 10 1 467876655555565 5766 99999999863 32 2366666666666554
No 10
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD, transit peptide; 2.00A {Homo sapiens}
Probab=64.49 E-value=6.2 Score=30.68 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=36.8
Q ss_pred eCceeEEEcCeeccccCC--HHHHHHHH-hHHHHhcc-cccceecEEEEEecCCccchHHHHHHHHHHHHHHh
Q 032049 29 RGRGLIKINGCPIELVEP--EILRFKAY-EPILLLGR-HRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF 97 (148)
Q Consensus 29 ~G~G~I~INg~~l~~y~~--~~~r~~i~-~PL~~~~~-~~~~~~di~i~V~GGG~sgQa~AIr~aiAraL~~~ 97 (148)
+|+|.+.+.|.+-..... +..+..+. ..+.+... ..|...||+|++-||-..-.=-+.-++||-||+..
T Consensus 43 ~g~g~~~itG~~~~~~kES~~~a~s~~~~~~~~~~~~~~~~~~~di~vnl~~g~~~K~GpsadLaia~AilSa 115 (207)
T 2x36_A 43 DKDGSLEVTGQLGEVMKESARIAYTFARAFLMQHAPANDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSL 115 (207)
T ss_dssp ---CEEEEESCCCHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHCEEEEECCSCBCTTTGGGGHHHHHHHHHHH
T ss_pred CCCCeEEEEeCchHHHHHHHHHHHHHHHhcccccccccccCccceEEEEeCCcccCCCCCcchHHHHHHHHHH
Confidence 689999999976544422 11122111 12222111 13578999999998865534445556666666654
No 11
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=64.02 E-value=14 Score=28.47 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=39.0
Q ss_pred EEEEEeCceeEEEcCeeccccCCHHHHHHHHhHHH----Hhcc--cccceecEEEEEecCCccchHHHHHHHHHHHHHHh
Q 032049 24 VTYCKRGRGLIKINGCPIELVEPEILRFKAYEPIL----LLGR--HRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF 97 (148)
Q Consensus 24 ~v~l~~G~G~I~INg~~l~~y~~~~~r~~i~~PL~----~~~~--~~~~~~di~i~V~GGG~sgQa~AIr~aiAraL~~~ 97 (148)
.|.+.+|.|.+.+.|.+-..+... ++.+..-+. -.+. +.|..+||+|++-||..--.--+.-++||-||+..
T Consensus 30 E~~~~~G~g~~~itG~~~~~~kES--~~~a~s~~~~~~~~~g~~~~~~~~~di~vnl~~g~~~k~GpsadLaia~AilSa 107 (200)
T 1rre_A 30 ETACVPGKGKLTYTGSLGEVMQES--IQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSC 107 (200)
T ss_dssp EEEEEECSSCEEEESSBCHHHHHH--HHHHHHHHHHTHHHHTCCTTTTTSEEEEEECSSTTSCEESSTTHHHHHHHHHHH
T ss_pred EEEEeCCCceEEEecCchHHHHHH--HHHHHHHHHHhHHhcCCCcccCCcceEEEEeCCccccCCCCcchHHHHHHHHHH
Confidence 344558999999999764433221 111222222 2222 12578999999988765212223445555555544
No 12
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=56.69 E-value=7.3 Score=33.94 Aligned_cols=74 Identities=19% Similarity=0.131 Sum_probs=37.6
Q ss_pred EEEEEeCceeEEEcCeeccccCCHHHH--HHHHhHHHHhccc--ccceecEEEEEecCCccchHHHHHHHHHHHHHHh
Q 032049 24 VTYCKRGRGLIKINGCPIELVEPEILR--FKAYEPILLLGRH--RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF 97 (148)
Q Consensus 24 ~v~l~~G~G~I~INg~~l~~y~~~~~r--~~i~~PL~~~~~~--~~~~~di~i~V~GGG~sgQa~AIr~aiAraL~~~ 97 (148)
.|.+.+|.|.+++.|.+-..+.....+ ..+..-+.-++.. .+.++||+|+|-||.+--.=-+.-++||-||+..
T Consensus 373 e~~~~~g~~~~~~~G~~~~~~~es~~~a~~~v~~~~~~~g~~~~~~~~~di~v~~~~g~~~k~gpsa~l~ia~ai~s~ 450 (543)
T 3m6a_A 373 EVSLSPGKGKLILTGKLGDVMRESAQAAFSYVRSKTEELGIEPDFHEKYDIHIHVPEGAVPKDGPAAGITMATALVSA 450 (543)
T ss_dssp EEEEESSCSCEEEEESCCHHHHHHHHHHHHHHTSSCGGGSSCSSCTTTCEEEEEECTTBCGGGGGGGHHHHHHHHHHH
T ss_pred EEEeeCCCCceEEecCchHHHHHHHHHHHHHHHHHHHHcCCCccccCCcceEEEeCCCCCCCCCchhHHHHHHHHHHH
Confidence 344558889999988654322111100 1122222112221 2568899999999852222223345555566554
No 13
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=52.36 E-value=7.4 Score=30.37 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=16.8
Q ss_pred ceecEEEEEecCCccchHHHHHHH
Q 032049 66 AGVDMRIRVKGGGHTSQIYAIRQS 89 (148)
Q Consensus 66 ~~~di~i~V~GGG~sgQa~AIr~a 89 (148)
++||| -|-|||++|-+-|+.+|
T Consensus 3 e~yDV--iIVGaGpaGl~~A~~La 24 (397)
T 3oz2_A 3 ETYDV--LVVGGGPGGSTAARYAA 24 (397)
T ss_dssp EEEEE--EEECCSHHHHHHHHHHH
T ss_pred CCCCE--EEECcCHHHHHHHHHHH
Confidence 47887 45699999998776654
No 14
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=50.69 E-value=22 Score=26.76 Aligned_cols=33 Identities=6% Similarity=0.065 Sum_probs=21.9
Q ss_pred cceecEEEEEecCCccchHHHHHHHHHHHHHHh
Q 032049 65 FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF 97 (148)
Q Consensus 65 ~~~~di~i~V~GGG~sgQa~AIr~aiAraL~~~ 97 (148)
+..+||+|++-+|..--.=-+.-+|||-||+..
T Consensus 77 ~~~~di~vn~~~g~~~k~GpsadLaia~AilSa 109 (187)
T 1xhk_A 77 LNNKEIYIQFSQSYSKIDGDSATAAVCLAIISA 109 (187)
T ss_dssp STTEEEEEEESSCCCTTTGGGGHHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCcCCcCchHHHHHHHHHHHH
Confidence 678999999998843333334456666666654
No 15
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=50.49 E-value=7 Score=27.20 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=15.1
Q ss_pred EEEecCCccchHHHHHHHH
Q 032049 72 IRVKGGGHTSQIYAIRQSI 90 (148)
Q Consensus 72 i~V~GGG~sgQa~AIr~ai 90 (148)
|-|=|+|++|-+-|+.++=
T Consensus 5 V~IIGaGpaGL~aA~~La~ 23 (336)
T 3kkj_A 5 IAIIGTGIAGLSAAQALTA 23 (336)
T ss_dssp EEEECCSHHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHH
Confidence 5677999999998876653
No 16
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=41.74 E-value=16 Score=28.15 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=18.2
Q ss_pred eecEEEEEecCCccchHHHHHHHH
Q 032049 67 GVDMRIRVKGGGHTSQIYAIRQSI 90 (148)
Q Consensus 67 ~~di~i~V~GGG~sgQa~AIr~ai 90 (148)
++|.+|.|=|||+.|-+-|++++-
T Consensus 4 e~~yDvvIIG~GpAGl~aA~~l~~ 27 (312)
T 4gcm_A 4 EIDFDIAIIGAGPAGMTAAVYASR 27 (312)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH
Confidence 345556777999999998888753
No 17
>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A
Probab=40.82 E-value=12 Score=28.90 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=32.7
Q ss_pred eeEEEcCeeccccCCHHHHHHHHhHH-HHhcccccceecEEEEEecCCccchHHHHHHHHHHHHHHh
Q 032049 32 GLIKINGCPIELVEPEILRFKAYEPI-LLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF 97 (148)
Q Consensus 32 G~I~INg~~l~~y~~~~~r~~i~~PL-~~~~~~~~~~~di~i~V~GGG~sgQa~AIr~aiAraL~~~ 97 (148)
|.+.+.|.+-..... -++.++.-| ...+. .+..+||+|++-||..--.--+.-+|||-||+..
T Consensus 44 p~~~~~G~~~~~~~e--s~~~v~a~l~~~~g~-~~~~~di~vnl~~g~~~k~GpsadLaia~AilSa 107 (207)
T 1z0w_A 44 GRVIATGRLQEIARE--AVMNVSAIIKKYTGR-DISNMDVHIQFVGTYEGVEGDSASISIATAVISA 107 (207)
T ss_dssp CCEECCSTTHHHHHH--HHHHHHHHHHHHHCC-CGGGEEEEEEESSCCTTEECCTTBHHHHHHHHHH
T ss_pred CeEEEeCCchhhhHH--HHHHHHHHHHHhcCC-CCCCceEEEEEecccccccCCcchHHHHHHHHHH
Confidence 667777754221111 112233444 33454 3789999999998833222223344555555443
No 18
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=39.23 E-value=17 Score=29.91 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=17.7
Q ss_pred ecEEEEEecCCccchHHHHHHH
Q 032049 68 VDMRIRVKGGGHTSQIYAIRQS 89 (148)
Q Consensus 68 ~di~i~V~GGG~sgQa~AIr~a 89 (148)
-+++|.|-|||++|-+-|.+++
T Consensus 9 ~~~DVvIIGaGisGLsaA~~L~ 30 (513)
T 4gde_A 9 ISVDVLVIGAGPTGLGAAKRLN 30 (513)
T ss_dssp EEEEEEEECCSHHHHHHHHHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHH
Confidence 4566688899999999887764
No 19
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=34.26 E-value=47 Score=28.24 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=16.9
Q ss_pred eecEEEEEecCCccchHHHHHHH
Q 032049 67 GVDMRIRVKGGGHTSQIYAIRQS 89 (148)
Q Consensus 67 ~~di~i~V~GGG~sgQa~AIr~a 89 (148)
.|| |.|-|||..|-+-|+.++
T Consensus 212 ~~d--VvIIGgG~AGl~aA~~la 232 (521)
T 1hyu_A 212 AYD--VLIVGSGPAGAAAAVYSA 232 (521)
T ss_dssp CEE--EEEECCSHHHHHHHHHHH
T ss_pred ccc--EEEECCcHHHHHHHHHHH
Confidence 555 578899999999888765
No 20
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=29.49 E-value=1e+02 Score=26.75 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=33.0
Q ss_pred ceeEEEcCeeccccCCHHHHHHHHhHHHH-hcccccceecEEEEEecCC--ccchHHHHHHHHHHHHHHh
Q 032049 31 RGLIKINGCPIELVEPEILRFKAYEPILL-LGRHRFAGVDMRIRVKGGG--HTSQIYAIRQSIAKALVAF 97 (148)
Q Consensus 31 ~G~I~INg~~l~~y~~~~~r~~i~~PL~~-~~~~~~~~~di~i~V~GGG--~sgQa~AIr~aiAraL~~~ 97 (148)
+|.+.+.|.+-...... .+.++.-|.- .+. .+..+||+|++-||- ..|- +.-+|||-||+..
T Consensus 434 ~g~~~~~g~~~~~~~es--~~~~~~~l~~~~~~-~~~~~~i~i~~~~~~~~~~gp--sa~l~~~~ai~sa 498 (604)
T 3k1j_A 434 EGKIIVTGKLGEIAKEA--VQNVSAIIKRYKGE-DISRYDIHVQFLQTYEGVEGD--AASISVATAVISA 498 (604)
T ss_dssp BCCEEEESCBCHHHHHH--HHHHHHHHHHHHCG-GGGGEEEEEEETTCTTCBCSS--TTHHHHHHHHHHH
T ss_pred CCEEEEecChHHHHHHH--HHHHHHHHHhhhcc-CCCCCcEEEEEcCCcccCCCc--cchHHHHHHHHHH
Confidence 46788888763332211 1112222332 344 368999999998875 3443 2334455555443
No 21
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=29.01 E-value=29 Score=30.26 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=20.5
Q ss_pred ceecEEEEEecCCccchHHHHHHH
Q 032049 66 AGVDMRIRVKGGGHTSQIYAIRQS 89 (148)
Q Consensus 66 ~~~di~i~V~GGG~sgQa~AIr~a 89 (148)
..||.++.|=|||..|..-|++.|
T Consensus 39 ~~ydYDviVIG~GpaG~~aA~~aa 62 (542)
T 4b1b_A 39 HTYDYDYVVIGGGPGGMASAKEAA 62 (542)
T ss_dssp CCSSEEEEEECCSHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCHHHHHHHHHHH
Confidence 467888889999999999998875
No 22
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=28.14 E-value=49 Score=22.75 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=21.1
Q ss_pred EEEeeeccceEEEEEEEeCce-----eEEEcCeecccc
Q 032049 12 VQCFGRKKTAVAVTYCKRGRG-----LIKINGCPIELV 44 (148)
Q Consensus 12 v~~~GrRKta~A~v~l~~G~G-----~I~INg~~l~~y 44 (148)
.+.+|..| ..|.+++.+.+| .+.|||+++++|
T Consensus 53 ~F~ig~~~-~k~~I~I~a~~~~~y~YtL~VngKslk~f 89 (90)
T 3mx7_A 53 TFYVGAAK-TKATINIDAISGFAYEYTLEINGKSLKKY 89 (90)
T ss_dssp EEEETTTT-EEEEEEEEEETTTEEEEEEEETTEEEEEC
T ss_pred eEEECCcc-eEEEEEEEecCCccEEEEEEECCEeHHHc
Confidence 34566533 346677766444 378999999987
No 23
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=27.77 E-value=36 Score=26.18 Aligned_cols=20 Identities=20% Similarity=0.079 Sum_probs=16.0
Q ss_pred EEEEecCCccchHHHHHHHH
Q 032049 71 RIRVKGGGHTSQIYAIRQSI 90 (148)
Q Consensus 71 ~i~V~GGG~sgQa~AIr~ai 90 (148)
+|.|-|||++|-+-|+.++=
T Consensus 6 dvvIIG~G~~Gl~~A~~La~ 25 (369)
T 3dme_A 6 DCIVIGAGVVGLAIARALAA 25 (369)
T ss_dssp EEEEECCSHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 45788999999988877653
No 24
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=27.74 E-value=32 Score=26.43 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=16.8
Q ss_pred ceecEEEEEecCCccchHHHHHHH
Q 032049 66 AGVDMRIRVKGGGHTSQIYAIRQS 89 (148)
Q Consensus 66 ~~~di~i~V~GGG~sgQa~AIr~a 89 (148)
.+||| .|=|||+.|-+-|+.+|
T Consensus 5 ~~yDV--vIIGaGpAGlsAA~~la 26 (304)
T 4fk1_A 5 KYIDC--AVIGAGPAGLNASLVLG 26 (304)
T ss_dssp -CEEE--EEECCSHHHHHHHHHHH
T ss_pred CCcCE--EEECCCHHHHHHHHHHH
Confidence 57886 55699999998887664
No 25
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=27.49 E-value=35 Score=27.09 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=16.0
Q ss_pred EEEEecCCccchHHHHHHHH
Q 032049 71 RIRVKGGGHTSQIYAIRQSI 90 (148)
Q Consensus 71 ~i~V~GGG~sgQa~AIr~ai 90 (148)
+|.|-|||++|-+-|..++=
T Consensus 6 DVvIIGaG~~Gl~~A~~La~ 25 (397)
T 2oln_A 6 DVVVVGGGPVGLATAWQVAE 25 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 45778999999998877663
No 26
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=25.87 E-value=49 Score=23.21 Aligned_cols=22 Identities=23% Similarity=0.130 Sum_probs=16.8
Q ss_pred EEEEEEEeCce---eEEEcCeeccc
Q 032049 22 VAVTYCKRGRG---LIKINGCPIEL 43 (148)
Q Consensus 22 ~A~v~l~~G~G---~I~INg~~l~~ 43 (148)
++.|.+.||+| +|+|||..+..
T Consensus 35 l~~v~l~P~~~G~FEV~vng~lV~S 59 (105)
T 2p0g_A 35 IEYVALHPDTGGRFEIFCNGVQIWE 59 (105)
T ss_dssp EEEEEEEEESTTCEEEEETTEEEEE
T ss_pred cceEEEEeCCCceEEEEECCEEEEE
Confidence 45677888654 69999998864
No 27
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=25.15 E-value=41 Score=26.79 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=15.1
Q ss_pred EEEEecCCccchHHHHHHH
Q 032049 71 RIRVKGGGHTSQIYAIRQS 89 (148)
Q Consensus 71 ~i~V~GGG~sgQa~AIr~a 89 (148)
+|.|-|||++|-+-|+.++
T Consensus 7 dVvIIGgG~aGl~~A~~La 25 (421)
T 3nix_A 7 DVLVIGAGPAGTVAASLVN 25 (421)
T ss_dssp EEEEECCSHHHHHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHH
Confidence 4577799999998887664
No 28
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=25.04 E-value=42 Score=26.29 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=16.2
Q ss_pred eecEEEEEecCCccchHHHHHHH
Q 032049 67 GVDMRIRVKGGGHTSQIYAIRQS 89 (148)
Q Consensus 67 ~~di~i~V~GGG~sgQa~AIr~a 89 (148)
.|| |.|-|||++|-+-|+.++
T Consensus 4 ~~d--VvIvG~G~aGl~~A~~La 24 (397)
T 3cgv_A 4 TYD--VLVVGGGPGGSTAARYAA 24 (397)
T ss_dssp EEE--EEEECCSHHHHHHHHHHH
T ss_pred cCC--EEEECcCHHHHHHHHHHH
Confidence 455 467799999998877665
No 29
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=24.10 E-value=45 Score=26.10 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=16.8
Q ss_pred cEEEEEecCCccchHHHHHHHH
Q 032049 69 DMRIRVKGGGHTSQIYAIRQSI 90 (148)
Q Consensus 69 di~i~V~GGG~sgQa~AIr~ai 90 (148)
+.+|.|-|||++|-+-|..++=
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~ 38 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAK 38 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHh
Confidence 3445777999999998887653
No 30
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=23.94 E-value=26 Score=27.41 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=20.4
Q ss_pred ceecEEEEEecCCccchHHHHHHHHHH
Q 032049 66 AGVDMRIRVKGGGHTSQIYAIRQSIAK 92 (148)
Q Consensus 66 ~~~di~i~V~GGG~sgQa~AIr~aiAr 92 (148)
..+| |-|=|||+.|-+-|+.+|-+|
T Consensus 64 ~~~D--V~IIGaGPAGlsAA~~la~~r 88 (326)
T 3fpz_A 64 AVSD--VIIVGAGSSGLSAAYVIAKNR 88 (326)
T ss_dssp TEES--EEEECCSHHHHHHHHHHHHHC
T ss_pred cCCC--EEEECCCHHHHHHHHHHHHhC
Confidence 4555 577899999999999998764
No 31
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=23.02 E-value=46 Score=28.18 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=18.2
Q ss_pred eecEEEEEecCCccchHHHHHHHH
Q 032049 67 GVDMRIRVKGGGHTSQIYAIRQSI 90 (148)
Q Consensus 67 ~~di~i~V~GGG~sgQa~AIr~ai 90 (148)
+.+..|.|-|||++|-+-|+.++-
T Consensus 10 ~~~~dVlIVGaGpaGl~~A~~La~ 33 (499)
T 2qa2_A 10 RSDASVIVVGAGPAGLMLAGELRL 33 (499)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH
Confidence 445567888999999998877654
No 32
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=22.38 E-value=44 Score=26.72 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=16.1
Q ss_pred ceecEEEEEecCCccchHHHHHHH
Q 032049 66 AGVDMRIRVKGGGHTSQIYAIRQS 89 (148)
Q Consensus 66 ~~~di~i~V~GGG~sgQa~AIr~a 89 (148)
..||| .|-|||++|-+-|+.++
T Consensus 22 ~~~dV--~IVGaG~aGl~~A~~La 43 (407)
T 3rp8_A 22 GHMKA--IVIGAGIGGLSAAVALK 43 (407)
T ss_dssp -CCEE--EEECCSHHHHHHHHHHH
T ss_pred CCCEE--EEECCCHHHHHHHHHHH
Confidence 45665 67799999998876664
No 33
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=22.34 E-value=47 Score=25.92 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=16.5
Q ss_pred EEEEecCCccchHHHHHHHHH
Q 032049 71 RIRVKGGGHTSQIYAIRQSIA 91 (148)
Q Consensus 71 ~i~V~GGG~sgQa~AIr~aiA 91 (148)
+|.|-|||++|-+-|+.++=+
T Consensus 2 dVvIIGgGi~Gls~A~~La~~ 22 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHER 22 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHHh
Confidence 467889999999988776543
No 34
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=21.98 E-value=1.1e+02 Score=18.95 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=22.8
Q ss_pred EEEEEecCC-ccchHHHHHHHHHHHHHHhhh
Q 032049 70 MRIRVKGGG-HTSQIYAIRQSIAKALVAFYQ 99 (148)
Q Consensus 70 i~i~V~GGG-~sgQa~AIr~aiAraL~~~~~ 99 (148)
|.|.+..|- ...|-.++..+|+.+|...++
T Consensus 3 I~I~l~~Grls~eqk~~L~~~l~~~l~~~lg 33 (76)
T 1gyx_A 3 IDIKCFPRELDEQQKAALAADITDVIIRHLN 33 (76)
T ss_dssp EEEEESCCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 445555666 678889999999999988654
No 35
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=21.97 E-value=52 Score=25.88 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=16.5
Q ss_pred EEEEEecCCccchHHHHHHHH
Q 032049 70 MRIRVKGGGHTSQIYAIRQSI 90 (148)
Q Consensus 70 i~i~V~GGG~sgQa~AIr~ai 90 (148)
.+|.|-|||++|-+-|..++=
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~ 42 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAK 42 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHH
Confidence 345777999999988887764
No 36
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=21.94 E-value=46 Score=25.97 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=15.2
Q ss_pred EEEEEecCCccchHHHHHHH
Q 032049 70 MRIRVKGGGHTSQIYAIRQS 89 (148)
Q Consensus 70 i~i~V~GGG~sgQa~AIr~a 89 (148)
..|.|-|||++|-+-|+.++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~ 21 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLR 21 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHH
Confidence 35678899999988776553
No 37
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=21.81 E-value=63 Score=22.80 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=18.1
Q ss_pred ceEEEEEEEeCce---eEEEcCeeccc
Q 032049 20 TAVAVTYCKRGRG---LIKINGCPIEL 43 (148)
Q Consensus 20 ta~A~v~l~~G~G---~I~INg~~l~~ 43 (148)
+.++.|.+.||+| +|.|||..+.+
T Consensus 42 ~~l~eVsL~Pg~gG~FeV~vdg~lVws 68 (107)
T 3dex_A 42 TELTELALKPGTGGVFVVRVDDEVVWD 68 (107)
T ss_dssp TTEEEEEEEEESSSCEEEEETTEEEEE
T ss_pred cccceEEEEeCCCceEEEEECCEEEEE
Confidence 3467788888764 68899988765
No 38
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=21.73 E-value=2.7e+02 Score=21.17 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=23.2
Q ss_pred ceecEEEEEe---cCCccchHHHHHHHHHHHHHHhhhh
Q 032049 66 AGVDMRIRVK---GGGHTSQIYAIRQSIAKALVAFYQK 100 (148)
Q Consensus 66 ~~~di~i~V~---GGG~sgQa~AIr~aiAraL~~~~~~ 100 (148)
..++|.+.-+ |.|+.|-+ |...|+++||..+++.
T Consensus 80 ~g~~i~i~~~IP~g~GLGsSs-a~a~a~l~al~~l~~~ 116 (271)
T 2v8p_A 80 INYSIFIQKNIPPGAGLGGGS-SNLAVVLKKVNELLGS 116 (271)
T ss_dssp CCEEEEEECCSCTTSSSCHHH-HHHHHHHHHHHHHTTC
T ss_pred CCeEEEEEeCCCCCCCCchHH-HHHHHHHHHHHHhcCC
Confidence 3466655543 88887665 6777888888887654
No 39
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=21.68 E-value=54 Score=25.62 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=15.7
Q ss_pred EEEEecCCccchHHHHHHHH
Q 032049 71 RIRVKGGGHTSQIYAIRQSI 90 (148)
Q Consensus 71 ~i~V~GGG~sgQa~AIr~ai 90 (148)
+|.|-|||++|-+-|..++-
T Consensus 5 dvvIIGaG~~Gl~~A~~La~ 24 (389)
T 2gf3_A 5 DVIVVGAGSMGMAAGYQLAK 24 (389)
T ss_dssp EEEEECCSHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 45778999999988777653
No 40
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=21.17 E-value=49 Score=25.93 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.5
Q ss_pred EEEEecCCccchHHHHHHH
Q 032049 71 RIRVKGGGHTSQIYAIRQS 89 (148)
Q Consensus 71 ~i~V~GGG~sgQa~AIr~a 89 (148)
+|.|-|||++|-+-|..++
T Consensus 8 dVvVIG~Gi~Gls~A~~La 26 (363)
T 1c0p_A 8 RVVVLGSGVIGLSSALILA 26 (363)
T ss_dssp EEEEECCSHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHH
Confidence 4577899999999888774
No 41
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=20.98 E-value=40 Score=23.61 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=15.6
Q ss_pred EEEEEEeCce---eEEEcCeeccc
Q 032049 23 AVTYCKRGRG---LIKINGCPIEL 43 (148)
Q Consensus 23 A~v~l~~G~G---~I~INg~~l~~ 43 (148)
+.|.+.||+| +|+|||..+.+
T Consensus 38 ~~v~l~P~~~G~FEV~vng~lV~S 61 (104)
T 2oka_A 38 GKVCLEPGTGGVFRITCDGVQVWE 61 (104)
T ss_dssp SEEEEEEECTTCEEEEETTEEEEE
T ss_pred ceEEEEeCCCceEEEEECCEEEEE
Confidence 4567777654 79999998864
No 42
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=20.46 E-value=55 Score=18.18 Aligned_cols=16 Identities=44% Similarity=0.706 Sum_probs=9.3
Q ss_pred cCCccchHHHHHHHHH
Q 032049 76 GGGHTSQIYAIRQSIA 91 (148)
Q Consensus 76 GGG~sgQa~AIr~aiA 91 (148)
|||-.+.|+|-|.|-|
T Consensus 14 gggsaaeayakriaea 29 (33)
T 2i9n_A 14 GGGSAAEAYAKRIAEA 29 (33)
T ss_dssp SCCCSTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHH
Confidence 5556666776665433
No 43
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=20.08 E-value=61 Score=24.91 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=16.5
Q ss_pred eecEEEEEecCCccchHHHHHHH
Q 032049 67 GVDMRIRVKGGGHTSQIYAIRQS 89 (148)
Q Consensus 67 ~~di~i~V~GGG~sgQa~AIr~a 89 (148)
.+| |.|-|||++|-+-|+.++
T Consensus 39 ~~d--VvIIGgG~aGl~aA~~la 59 (284)
T 1rp0_A 39 ETD--VVVVGAGSAGLSAAYEIS 59 (284)
T ss_dssp EEE--EEEECCSHHHHHHHHHHH
T ss_pred ccC--EEEECccHHHHHHHHHHH
Confidence 455 577899999998887765
No 44
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=20.07 E-value=52 Score=25.61 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=15.8
Q ss_pred EEEEecCCccchHHHHHHHH
Q 032049 71 RIRVKGGGHTSQIYAIRQSI 90 (148)
Q Consensus 71 ~i~V~GGG~sgQa~AIr~ai 90 (148)
+|.|-|||++|-+-|..++=
T Consensus 4 dvvIIG~Gi~Gl~~A~~La~ 23 (372)
T 2uzz_A 4 DLIIIGSGSVGAAAGYYATR 23 (372)
T ss_dssp EEEESCTTHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 45778999999988777653
Done!