Query 032050
Match_columns 148
No_of_seqs 113 out of 847
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:55:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 5.4E-39 1.2E-43 257.3 14.8 130 3-132 98-235 (236)
2 PF00139 Lectin_legB: Legume l 100.0 5E-37 1.1E-41 245.3 12.4 127 3-130 99-236 (236)
3 cd01951 lectin_L-type legume l 100.0 2.3E-29 4.9E-34 198.8 14.1 121 5-131 94-223 (223)
4 cd07308 lectin_leg-like legume 99.2 2.8E-10 6E-15 89.9 13.7 110 14-130 97-216 (218)
5 cd06902 lectin_ERGIC-53_ERGL E 98.8 8.5E-08 1.8E-12 76.8 12.5 113 15-131 100-223 (225)
6 cd06903 lectin_EMP46_EMP47 EMP 98.1 7.9E-05 1.7E-09 59.4 11.5 100 17-131 103-213 (215)
7 PF03388 Lectin_leg-like: Legu 97.8 0.00055 1.2E-08 54.8 12.2 108 17-129 103-225 (229)
8 cd06901 lectin_VIP36_VIPL VIP3 97.7 0.00073 1.6E-08 55.0 11.8 109 17-131 101-222 (248)
9 KOG3838 Mannose lectin ERGIC-5 97.2 0.0042 9E-08 53.8 9.8 106 18-128 135-251 (497)
10 cd06900 lectin_VcfQ VcfQ bacte 94.8 0.53 1.1E-05 38.6 10.5 29 101-129 225-253 (255)
11 KOG3839 Lectin VIP36, involved 93.5 0.11 2.5E-06 44.1 4.3 106 17-129 153-272 (351)
12 smart00282 LamG Laminin G doma 52.7 76 0.0016 22.0 8.2 25 55-81 57-81 (135)
13 KOG3514 Neurexin III-alpha [Si 37.1 1.5E+02 0.0032 29.8 7.3 85 9-110 877-963 (1591)
14 PF13619 KTSC: KTSC domain 33.7 52 0.0011 20.5 2.7 19 64-82 6-24 (60)
15 cd08389 C2A_Synaptotagmin-14_1 30.3 76 0.0016 22.3 3.4 23 61-83 3-25 (124)
16 PF11225 DUF3024: Protein of u 28.3 49 0.0011 20.6 1.9 21 64-84 6-26 (57)
17 cd00110 LamG Laminin G domain; 28.2 2.1E+02 0.0045 19.8 6.2 25 56-82 76-100 (151)
18 smart00159 PTX Pentraxin / C-r 27.2 1E+02 0.0022 23.9 3.9 28 54-81 84-111 (206)
19 PF10049 DUF2283: Protein of u 25.8 79 0.0017 19.1 2.4 16 66-81 2-17 (50)
20 PRK08493 NADH dehydrogenase su 25.7 45 0.00096 31.9 1.9 28 14-41 666-694 (819)
21 cd08390 C2A_Synaptotagmin-15-1 25.2 1.1E+02 0.0024 20.9 3.5 22 62-83 2-23 (123)
22 smart00560 LamGL LamG-like jel 24.3 1.2E+02 0.0025 21.5 3.5 22 60-81 61-82 (133)
23 cd00276 C2B_Synaptotagmin C2 d 22.8 1.3E+02 0.0027 20.8 3.4 22 62-83 2-23 (134)
24 cd00152 PTX Pentraxins are pla 22.2 1.3E+02 0.0029 23.0 3.7 27 56-82 86-112 (201)
25 cd08388 C2A_Synaptotagmin-4-11 21.2 1.6E+02 0.0035 20.7 3.8 23 61-83 3-25 (128)
26 cd08521 C2A_SLP C2 domain firs 20.6 1.6E+02 0.0034 20.0 3.5 22 62-83 2-23 (123)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=5.4e-39 Score=257.33 Aligned_cols=130 Identities=30% Similarity=0.418 Sum_probs=118.7
Q ss_pred CCCceecCCCC----CCCCeEEEEEeCccCC-C-CCCCCceeeecCccccccceecc--ccccCCCceeEEEEEEeCCCC
Q 032050 3 FSSYLSKFPLY----LPRPHGSLESDVYVNS-W-DPTISKLLVSISTLCNQRKMYLL--RSDVKSGRRNEAWISYNSSTH 74 (148)
Q Consensus 3 ~g~~LGl~n~~----~~n~~vAVEFDT~~n~-~-Dp~~nHVgI~ins~~S~~~~~~~--~~~l~~G~~~~vwI~Yd~~~~ 74 (148)
.|+||||++.. ..++.|||||||++|. + ||+.+||||++|++.|..+..+. ...+.+|+.++|||+||+.++
T Consensus 98 ~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHigIdvn~~~S~~~~~~~~~~~~l~~g~~~~v~I~Y~~~~~ 177 (236)
T cd06899 98 SGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLVSVKAGYWDDDGGKLKSGKPMQAWIDYDSSSK 177 (236)
T ss_pred CcceeeeecCCCCCCcccceEEEEeecccCcccCCCCCCeEEEEcCCcccceeeccccccccccCCCeEEEEEEEcCCCC
Confidence 68999999875 5789999999999998 3 99999999999999888877763 234789999999999999999
Q ss_pred ceEEEEEcCCCCCcccceeeEEecCCcCCCCeeEEEEEeecCCCcceeEEEEEEEeeC
Q 032050 75 NPSVAFTGFRNNSVVMQGLGYQVDLRQHLPEFVTFGFSMETRVDFVIFSIYSWEFNSS 132 (148)
Q Consensus 75 ~L~V~l~~~~~~~~~~p~Ls~~vdL~~~L~~~v~vGFSAsTG~~~~~h~I~sWsF~s~ 132 (148)
+|+|+|......+|..|+|+..+||+.+|+++|||||||+||...|.|+|++|+|++.
T Consensus 178 ~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG~~~~~h~i~sWsF~s~ 235 (236)
T cd06899 178 RLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVYVGFSASTGLLTELHYILSWSFSSN 235 (236)
T ss_pred EEEEEEEeCCCCCCcCCEEEEeccHHHhCCCceEEEEEeEcCCCcceEEEEEEEEEcC
Confidence 9999999877667889999999999999999999999999999999999999999875
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=5e-37 Score=245.33 Aligned_cols=127 Identities=26% Similarity=0.371 Sum_probs=112.5
Q ss_pred CCCceecCCCC----CCCCeEEEEEeCccCC--CCCCCCceeeecCccccccceecc-----ccccCCCceeEEEEEEeC
Q 032050 3 FSSYLSKFPLY----LPRPHGSLESDVYVNS--WDPTISKLLVSISTLCNQRKMYLL-----RSDVKSGRRNEAWISYNS 71 (148)
Q Consensus 3 ~g~~LGl~n~~----~~n~~vAVEFDT~~n~--~Dp~~nHVgI~ins~~S~~~~~~~-----~~~l~~G~~~~vwI~Yd~ 71 (148)
.|++||+++.. ..+++||||||||+|. .||+.+||||++|++.+.++.++. ..++.+|+.+.|||+||+
T Consensus 99 ~g~~lG~~~~~~~~~~~~~~vAVEFDT~~N~~~~d~~~nHIgI~~n~~~s~~~~~~~~~~~~~~~l~~g~~~~v~I~Yd~ 178 (236)
T PF00139_consen 99 SGGYLGLFNSSTDGNGINNSVAVEFDTYKNPEYNDPDDNHIGIDVNSVVSNKTASAGYYSSPSFSLSDGKWHTVWIDYDA 178 (236)
T ss_dssp SGGGTTTSSSSSTTGGGGCEEEEEEETSTCGGGTTTSSSEEEEEESSSSESEEEE----EEEEHHHGTTSEEEEEEEEET
T ss_pred CCCccCccccccCCCccCcEEEEEEeeeecccccccCCCEEEEECCCCcccccccccccccccccccCCcEEEEEEEEcC
Confidence 47899999875 3789999999999987 599999999999999888774431 568899999999999999
Q ss_pred CCCceEEEEEcCCCCCcccceeeEEecCCcCCCCeeEEEEEeecCCCcceeEEEEEEEe
Q 032050 72 STHNPSVAFTGFRNNSVVMQGLGYQVDLRQHLPEFVTFGFSMETRVDFVIFSIYSWEFN 130 (148)
Q Consensus 72 ~~~~L~V~l~~~~~~~~~~p~Ls~~vdL~~~L~~~v~vGFSAsTG~~~~~h~I~sWsF~ 130 (148)
.+++|+|+|.... .+|..|+|+..+||+.+|+++||||||||||...|.|.|++|+|+
T Consensus 179 ~~~~L~V~l~~~~-~~~~~~~l~~~vdL~~~l~~~v~vGFsasTG~~~~~h~I~sW~F~ 236 (236)
T PF00139_consen 179 STKRLSVYLDDNS-SKPSSPVLSVNVDLSAVLPEQVYVGFSASTGGSYQTHDILSWSFS 236 (236)
T ss_dssp TTTEEEEEEEETT-TTSEEEEEEEE--HHHHSCSEEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred CccEEEEEEeccc-CCCcceeEEEEEchHHhcCCCcEEEEEeecCCCcceEEEEEEEeC
Confidence 9999999999875 578889999999999999999999999999999999999999995
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=99.96 E-value=2.3e-29 Score=198.82 Aligned_cols=121 Identities=22% Similarity=0.245 Sum_probs=101.7
Q ss_pred CceecCCCCCCCCeEEEEEeCccCC--CCCCCCceeeecCccccc-------cceeccccccCCCceeEEEEEEeCCCCc
Q 032050 5 SYLSKFPLYLPRPHGSLESDVYVNS--WDPTISKLLVSISTLCNQ-------RKMYLLRSDVKSGRRNEAWISYNSSTHN 75 (148)
Q Consensus 5 ~~LGl~n~~~~n~~vAVEFDT~~n~--~Dp~~nHVgI~ins~~S~-------~~~~~~~~~l~~G~~~~vwI~Yd~~~~~ 75 (148)
++||.- ..++.+|||||||+|. +||+.+||||++|+..+. ....+ +....+|+.++|||+|++.+++
T Consensus 94 ~~lG~~---~~~~~~aVefDT~~N~~~~dp~~~higi~~n~~~~~~~~~~~~~~~~~-~~~~~~g~~~~v~I~Y~~~~~~ 169 (223)
T cd01951 94 GGLGYG---GIGNSVAVEFDTYKNDDNNDPNGNHISIDVNGNGNNTALATSLGSASL-PNGTGLGNEHTVRITYDPTTNT 169 (223)
T ss_pred CccCcc---ccCCeEEEEEeccccCCCCCCCCCEEEEEcCCCCCCcccccccceeeC-CCccCCCCEEEEEEEEeCCCCE
Confidence 677754 5678999999999998 499999999999988642 23333 2222338999999999999999
Q ss_pred eEEEEEcCCCCCcccceeeEEecCCcCCCCeeEEEEEeecCCCcceeEEEEEEEee
Q 032050 76 PSVAFTGFRNNSVVMQGLGYQVDLRQHLPEFVTFGFSMETRVDFVIFSIYSWEFNS 131 (148)
Q Consensus 76 L~V~l~~~~~~~~~~p~Ls~~vdL~~~L~~~v~vGFSAsTG~~~~~h~I~sWsF~s 131 (148)
|+|+|..... |..+.++.++||+..++++||||||||||...|.|+|++|+|++
T Consensus 170 L~v~l~~~~~--~~~~~l~~~~~l~~~~~~~~yvGFTAsTG~~~~~h~V~~wsf~~ 223 (223)
T cd01951 170 LTVYLDNGST--LTSLDITIPVDLIQLGPTKAYFGFTASTGGLTNLHDILNWSFTS 223 (223)
T ss_pred EEEEECCCCc--cccccEEEeeeecccCCCcEEEEEEcccCCCcceeEEEEEEecC
Confidence 9999986543 56789999999999999999999999999999999999999963
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.24 E-value=2.8e-10 Score=89.86 Aligned_cols=110 Identities=20% Similarity=0.045 Sum_probs=71.9
Q ss_pred CCCCeEEEEEeCccCCCCCCCCceeeecC-cccccc------ceeccc--cccC-CCceeEEEEEEeCCCCceEEEEEcC
Q 032050 14 LPRPHGSLESDVYVNSWDPTISKLLVSIS-TLCNQR------KMYLLR--SDVK-SGRRNEAWISYNSSTHNPSVAFTGF 83 (148)
Q Consensus 14 ~~n~~vAVEFDT~~n~~Dp~~nHVgI~in-s~~S~~------~~~~~~--~~l~-~G~~~~vwI~Yd~~~~~L~V~l~~~ 83 (148)
...+.+||||||++|. +-...+|.+.+| +..+.. ...+.. .... .+..++++|.|+ .+.|.|.+...
T Consensus 97 ~~~~Glai~fdt~~n~-~~~~p~i~~~~Ndg~~~~~~~~d~~~~~~~~c~~~~~~~~~~~~~~I~y~--~~~l~v~i~~~ 173 (218)
T cd07308 97 DKFKGLAIFFDTYDND-GKGFPSISVFLNDGTKSYDYETDGEKLELASCSLKFRNSNAPTTLRISYL--NNTLKVDITYS 173 (218)
T ss_pred CCCCEEEEEEEcCCCC-CCCCCeEEEEEeCCCceecccCCCccccccceeEecccCCCCeEEEEEEE--CCEEEEEEeCC
Confidence 4467899999999986 223345555444 222211 111111 1222 267999999999 57899999753
Q ss_pred CCCCcccceeeEEecCCcCCCCeeEEEEEeecCCCcceeEEEEEEEe
Q 032050 84 RNNSVVMQGLGYQVDLRQHLPEFVTFGFSMETRVDFVIFSIYSWEFN 130 (148)
Q Consensus 84 ~~~~~~~p~Ls~~vdL~~~L~~~v~vGFSAsTG~~~~~h~I~sWsF~ 130 (148)
. +....+...++.- .|++..|+||||+||...+.|+|++|.+.
T Consensus 174 ~---~~~~~~c~~~~~~-~l~~~~y~G~sA~tg~~~d~~dIls~~~~ 216 (218)
T cd07308 174 E---GNNWKECFTVEDV-ILPSQGYFGFSAQTGDLSDNHDILSVHTY 216 (218)
T ss_pred C---CCCccEEEEcCCc-ccCCCCEEEEEeccCCCcCcEEEEEEEee
Confidence 2 1223344334322 46788999999999999999999999875
No 5
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=98.83 E-value=8.5e-08 Score=76.82 Aligned_cols=113 Identities=16% Similarity=-0.013 Sum_probs=69.2
Q ss_pred CCCeEEEEEeCccCCCCCCCCceeeecC-cccccc------ceecc--ccccC-CCceeEEEEEEeCCCCceEEEEEcCC
Q 032050 15 PRPHGSLESDVYVNSWDPTISKLLVSIS-TLCNQR------KMYLL--RSDVK-SGRRNEAWISYNSSTHNPSVAFTGFR 84 (148)
Q Consensus 15 ~n~~vAVEFDT~~n~~Dp~~nHVgI~in-s~~S~~------~~~~~--~~~l~-~G~~~~vwI~Yd~~~~~L~V~l~~~~ 84 (148)
.-.-+||.|||+.|........|.+-.| +..... ...+. ....+ .....+++|.|.. +.|+|.+....
T Consensus 100 ~f~Gl~I~~Dt~~n~~~~~~p~i~~~~NDGt~~yd~~~D~~~~~~~~C~~~~rn~~~p~~~rI~Y~~--~~l~V~~d~~~ 177 (225)
T cd06902 100 KWNGVGIFFDSFDNDGKKNNPAILVVGNDGTKSYDHQNDGLTQALGSCLRDFRNKPYPVRAKITYYQ--NVLTVSINNGF 177 (225)
T ss_pred cccEEEEEEECCCCCCCCCCcEEEEEECCCCeeccccCCCcccccceEEEeccCCCCCeEEEEEEEC--CeEEEEEeCCc
Confidence 3357899999998754323345655543 222111 11111 11222 3467899999999 46888886432
Q ss_pred CCCcccceeeEEecCCc-CCCCeeEEEEEeecCCCcceeEEEEEEEee
Q 032050 85 NNSVVMQGLGYQVDLRQ-HLPEFVTFGFSMETRVDFVIFSIYSWEFNS 131 (148)
Q Consensus 85 ~~~~~~p~Ls~~vdL~~-~L~~~v~vGFSAsTG~~~~~h~I~sWsF~s 131 (148)
. +.......-.++.. .||+..|+||||+||...+.|+|++|.|.+
T Consensus 178 ~--~~~~~~~~Cf~~~~v~LP~~~yfGiSA~Tg~l~d~hDIls~~~~s 223 (225)
T cd06902 178 T--PNKDDYELCTRVENMVLPPNGYFGVSAATGGLADDHDVLSFLTFS 223 (225)
T ss_pred C--CCCCcccEEEecCCeeCCCCCEEEEEecCCCCCCcEeEEEEEEec
Confidence 1 11111111223333 467789999999999999999999999863
No 6
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=98.07 E-value=7.9e-05 Score=59.42 Aligned_cols=100 Identities=16% Similarity=0.053 Sum_probs=62.4
Q ss_pred CeEEEEEeCccCCCCCCCCceeeecC-ccccccc-----eecc--ccc-cCCCceeEEEEEEeCCCCceEEEEEcCCCCC
Q 032050 17 PHGSLESDVYVNSWDPTISKLLVSIS-TLCNQRK-----MYLL--RSD-VKSGRRNEAWISYNSSTHNPSVAFTGFRNNS 87 (148)
Q Consensus 17 ~~vAVEFDT~~n~~Dp~~nHVgI~in-s~~S~~~-----~~~~--~~~-l~~G~~~~vwI~Yd~~~~~L~V~l~~~~~~~ 87 (148)
.-+||.|||+.|.. ..|.+-.| +...... ..+. ... ...+...+++|.|....+.|+|.+..
T Consensus 103 ~Gl~I~~Dt~~n~~----p~i~~~~NDGt~~yd~~~d~~~~~g~C~~~~rn~~~p~~iri~Y~~~~~~l~v~vd~----- 173 (215)
T cd06903 103 DGLQLLIDNNGGSG----GSLRGFLNDGSKDYKNEDVDSLAFGSCLFAYQDSGVPSTIRLSYDALNSLFKVQVDN----- 173 (215)
T ss_pred cEEEEEEECCCCCC----ceEEEEECCCCeeccccCCcccccceeeEeccCCCCCEEEEEEEECCCCEEEEEECC-----
Confidence 46899999998731 23333332 2221111 1111 112 34566899999999977788888742
Q ss_pred cccceeeE-EecCCcCCC-CeeEEEEEeecCCCcceeEEEEEEEee
Q 032050 88 VVMQGLGY-QVDLRQHLP-EFVTFGFSMETRVDFVIFSIYSWEFNS 131 (148)
Q Consensus 88 ~~~p~Ls~-~vdL~~~L~-~~v~vGFSAsTG~~~~~h~I~sWsF~s 131 (148)
..++.. .+. || ...|+||||+||...+.|+|++-.+..
T Consensus 174 --~~Cf~~~~v~----lP~~~y~fGiSAaTg~~~d~hdIl~~~~~~ 213 (215)
T cd06903 174 --RLCFQTDKVQ----LPQGGYRFGITAANADNPESFEILKLKVWN 213 (215)
T ss_pred --CEEEecCCee----cCCCCCEEEEEEcCCCCCCcEEEEEEEEec
Confidence 123322 233 45 456799999999999999999877643
No 7
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=97.81 E-value=0.00055 Score=54.78 Aligned_cols=108 Identities=19% Similarity=0.069 Sum_probs=61.6
Q ss_pred CeEEEEEeCccCCCCC---CCCceeeecC-ccccccc------eecc--ccccC-CCceeEEEEEEeCCCCceEEEEEcC
Q 032050 17 PHGSLESDVYVNSWDP---TISKLLVSIS-TLCNQRK------MYLL--RSDVK-SGRRNEAWISYNSSTHNPSVAFTGF 83 (148)
Q Consensus 17 ~~vAVEFDT~~n~~Dp---~~nHVgI~in-s~~S~~~------~~~~--~~~l~-~G~~~~vwI~Yd~~~~~L~V~l~~~ 83 (148)
.-+||=||||.|...+ ....|.+.+| +...... ..+. ...++ .+...+++|.|... .|.|.+...
T Consensus 103 ~Gl~i~idt~~N~~~~~~~~~p~i~~~~NDGt~~~~~~~dg~~~~~~~C~~~~rn~~~p~~~ri~Y~~~--~l~v~id~~ 180 (229)
T PF03388_consen 103 DGLGIFIDTYDNDEGGHKRGFPYISAMLNDGTKSYDHDNDGKDQSLGSCSADYRNSDVPTRIRISYSKN--TLTVSIDSN 180 (229)
T ss_dssp EEEEEEEEES-TTCTTCTSTSSEEEEEEEESSS---GGGTTTTT-SEEEE---BTESSEEEEEEEEETT--EEEEEEETS
T ss_pred ceEEEEEEcccCCCcccccccceEEEEecCCCccccccccCcccccccceeccCcCCCCEEEEEEEECC--eEEEEEecc
Confidence 4689999999986433 2234444443 2221111 1111 12333 35678999999985 577777632
Q ss_pred --CCCCcccceeeEEecCCcCCCCeeEEEEEeecCCCcceeEEEEEEE
Q 032050 84 --RNNSVVMQGLGYQVDLRQHLPEFVTFGFSMETRVDFVIFSIYSWEF 129 (148)
Q Consensus 84 --~~~~~~~p~Ls~~vdL~~~L~~~v~vGFSAsTG~~~~~h~I~sWsF 129 (148)
.....-..++... .-.||+..|+||||+||...+.|+|++-.-
T Consensus 181 ~~~~~~~~~~Cf~~~---~v~LP~~~yfGvSA~Tg~~~d~hdi~s~~~ 225 (229)
T PF03388_consen 181 YLKNQDDWELCFTTD---GVDLPEGYYFGVSAATGELSDNHDILSVKT 225 (229)
T ss_dssp CCSECCTTEEEEEES---TEEGGSSBEEEEEEEESSSGGEEEEEEEEE
T ss_pred cccCCcCCcEEEEcC---CeecCCCCEEEEEecCCCCCCcEEEEEEEE
Confidence 1111122333321 113677889999999999999999998654
No 8
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=97.72 E-value=0.00073 Score=54.96 Aligned_cols=109 Identities=16% Similarity=0.014 Sum_probs=63.5
Q ss_pred CeEEEEEeCccCCCC---CCCCceeeecC-cccccc------ceecc--cccc-CCCceeEEEEEEeCCCCceEEEEEcC
Q 032050 17 PHGSLESDVYVNSWD---PTISKLLVSIS-TLCNQR------KMYLL--RSDV-KSGRRNEAWISYNSSTHNPSVAFTGF 83 (148)
Q Consensus 17 ~~vAVEFDT~~n~~D---p~~nHVgI~in-s~~S~~------~~~~~--~~~l-~~G~~~~vwI~Yd~~~~~L~V~l~~~ 83 (148)
.-+||-|||+.|... ....-|.+-+| +...-. ...+. ...+ ..+....++|.|... .|.|.+...
T Consensus 101 ~Gl~I~~Dt~~n~~~~~~~~~P~i~~~~NDGt~~yd~~~Dg~~~~~~~C~~~~rn~~~~t~~rI~Y~~~--~l~v~vd~~ 178 (248)
T cd06901 101 HGLAIFFDTYSNQNGEHEHVHPYISAMVNNGSLSYDHDRDGTHTELAGCSAPFRNKDHDTFVAIRYSKG--RLTVMTDID 178 (248)
T ss_pred ceEEEEEECCCCCCCcccCCCceEEEEEcCCCeeecccCCCchhhcCceeeeccCCCCCeEEEEEEECC--eEEEEEecC
Confidence 469999999998521 11223433332 322111 11111 1122 234567899999974 577777643
Q ss_pred CCCCcccceeeEEecCCcCCCCeeEEEEEeecCCCcceeEEEEEEEee
Q 032050 84 RNNSVVMQGLGYQVDLRQHLPEFVTFGFSMETRVDFVIFSIYSWEFNS 131 (148)
Q Consensus 84 ~~~~~~~p~Ls~~vdL~~~L~~~v~vGFSAsTG~~~~~h~I~sWsF~s 131 (148)
+.. .-..++. ++ .-.||...|+||||+||...+.|+|++-.+..
T Consensus 179 ~~~-~w~~Cf~--~~-~v~LP~~~yfGiSA~Tg~~sd~hdIlsv~~~~ 222 (248)
T cd06901 179 GKN-EWKECFD--VT-GVRLPTGYYFGASAATGDLSDNHDIISMKLYE 222 (248)
T ss_pred CCC-ceeeeEE--eC-CeecCCCCEEEEEecCCCCCCcEEEEEEEEec
Confidence 311 0012222 21 12367779999999999999999999988764
No 9
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.0042 Score=53.82 Aligned_cols=106 Identities=17% Similarity=0.033 Sum_probs=67.5
Q ss_pred eEEEEEeCccCCCCCCCCceeeecC-cccccc------ceeccc--cccCCC-ceeEEEEEEeCCCCceEEEEEcCCCCC
Q 032050 18 HGSLESDVYVNSWDPTISKLLVSIS-TLCNQR------KMYLLR--SDVKSG-RRNEAWISYNSSTHNPSVAFTGFRNNS 87 (148)
Q Consensus 18 ~vAVEFDT~~n~~Dp~~nHVgI~in-s~~S~~------~~~~~~--~~l~~G-~~~~vwI~Yd~~~~~L~V~l~~~~~~~ 87 (148)
-++|=||.|.|+..-+..-|.+-.| +-.+-. +.-+++ -+++|. -.++|+|+|=. ++|+|-+...-.+.
T Consensus 135 GigiffDSfdnD~qknnP~Is~~lndGt~~ydh~~DGasQ~LssCqrDFRNkPyPvRarItY~~--nvLtv~innGmtp~ 212 (497)
T KOG3838|consen 135 GIGIFFDSFDNDGQKNNPAISVLLNDGTIPYDHPGDGASQGLSSCQRDFRNKPYPVRARITYYG--NVLTVMINNGMTPS 212 (497)
T ss_pred ceEEEeecccccCCcCCccEEEEecCCcccccCCCccHHHHHHHhhHHhccCCCCceEEEEEec--cEEEEEEcCCCCCC
Confidence 4788899998864334445555554 222111 111211 144443 36899999988 68999887543221
Q ss_pred cccceeeEEecCCc-CCCCeeEEEEEeecCCCcceeEEEEEE
Q 032050 88 VVMQGLGYQVDLRQ-HLPEFVTFGFSMETRVDFVIFSIYSWE 128 (148)
Q Consensus 88 ~~~p~Ls~~vdL~~-~L~~~v~vGFSAsTG~~~~~h~I~sWs 128 (148)
..+-+. ++... +||..-|+|.||+||+...-|+|+++.
T Consensus 213 -d~yE~C--~rve~~~lp~nGyFGvSAATGgLADDHDVl~Fl 251 (497)
T KOG3838|consen 213 -DDYEFC--VRVENLLLPPNGYFGVSAATGGLADDHDVLSFL 251 (497)
T ss_pred -CCccee--EeccceeccCCCeeeeeecccccccccceeeeE
Confidence 122333 33333 467899999999999999999999975
No 10
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=94.79 E-value=0.53 Score=38.58 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=25.3
Q ss_pred cCCCCeeEEEEEeecCCCcceeEEEEEEE
Q 032050 101 QHLPEFVTFGFSMETRVDFVIFSIYSWEF 129 (148)
Q Consensus 101 ~~L~~~v~vGFSAsTG~~~~~h~I~sWsF 129 (148)
.-+|+..+++|++|||.+...|+|-..+.
T Consensus 225 ~avP~~f~lS~TgSTGgstN~HEIdnf~V 253 (255)
T cd06900 225 DAIPENFYLSFTGSTGGSTNTHEIDNFQV 253 (255)
T ss_pred CCCCccEEEEEEecCCCcccceeecceEe
Confidence 46789999999999999999999976554
No 11
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.46 E-value=0.11 Score=44.05 Aligned_cols=106 Identities=17% Similarity=0.054 Sum_probs=61.3
Q ss_pred CeEEEEEeCccCCCCCC---CCceeeecC-ccccc------cceecc--ccccCCCc-eeEEEEEEeCCCCceEEEEEcC
Q 032050 17 PHGSLESDVYVNSWDPT---ISKLLVSIS-TLCNQ------RKMYLL--RSDVKSGR-RNEAWISYNSSTHNPSVAFTGF 83 (148)
Q Consensus 17 ~~vAVEFDT~~n~~Dp~---~nHVgI~in-s~~S~------~~~~~~--~~~l~~G~-~~~vwI~Yd~~~~~L~V~l~~~ 83 (148)
+.+||=.|||.|..-|. ..-+.+.+| +..|. +.+.+. ...+++.. ...+-|.|+. ++|++.....
T Consensus 153 ~GL~vfidtY~n~~g~~~~v~P~isvmv~~gs~sYD~~~Dg~~tel~gc~a~~rn~~~dt~~~iry~~--~~l~~~~dl~ 230 (351)
T KOG3839|consen 153 TGLAVFIDTYGNHNGPHEHVFPYISVMVNIGSLSYDHSKDGTHTELAGCTANFRNLPHDTLVVIRYEK--KTLSISIDLE 230 (351)
T ss_pred eeEEEEEeccCCcCCCcccceeeEEEEeccCCcccccCCCCCccccccceeeeccCCCcceeEEEecC--CceEEEEecC
Confidence 56899999998853222 122333332 21111 111111 12233332 3567799999 4555555443
Q ss_pred CCCCcccceeeEEecCCcC-CCCeeEEEEEeecCCCcceeEEEEEEE
Q 032050 84 RNNSVVMQGLGYQVDLRQH-LPEFVTFGFSMETRVDFVIFSIYSWEF 129 (148)
Q Consensus 84 ~~~~~~~p~Ls~~vdL~~~-L~~~v~vGFSAsTG~~~~~h~I~sWsF 129 (148)
+ | .....-.+|..+ ||.--|+|+||+||...+.|+|.|-.+
T Consensus 231 ~---~--~~~~~c~~~n~v~lp~g~~fg~SasTGdlSd~HdivS~kl 272 (351)
T KOG3839|consen 231 G---P--NEWIDCFSLNNVELPLGYFFGVSASTGDLSDSHDIVSLKL 272 (351)
T ss_pred C---C--ceeeeeeeecceecccceEEeeeeccCccchhhHHHHhhh
Confidence 3 2 233444666664 677789999999999999999988654
No 12
>smart00282 LamG Laminin G domain.
Probab=52.66 E-value=76 Score=22.03 Aligned_cols=25 Identities=8% Similarity=0.229 Sum_probs=19.9
Q ss_pred cccCCCceeEEEEEEeCCCCceEEEEE
Q 032050 55 SDVKSGRRNEAWISYNSSTHNPSVAFT 81 (148)
Q Consensus 55 ~~l~~G~~~~vwI~Yd~~~~~L~V~l~ 81 (148)
..+.+|+.|.+.|.++.. .+.+.+.
T Consensus 57 ~~~~dg~WH~v~i~~~~~--~~~l~VD 81 (135)
T smart00282 57 TPLNDGQWHRVAVERNGR--RVTLSVD 81 (135)
T ss_pred eEeCCCCEEEEEEEEeCC--EEEEEEC
Confidence 578899999999999974 5555654
No 13
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=37.13 E-value=1.5e+02 Score=29.82 Aligned_cols=85 Identities=16% Similarity=0.054 Sum_probs=45.1
Q ss_pred cCCCCCCCCeEEEEEeCccCCCCCCCCceeeec-CccccccceeccccccCCCceeEEEEEEeCC-CCceEEEEEcCCCC
Q 032050 9 KFPLYLPRPHGSLESDVYVNSWDPTISKLLVSI-STLCNQRKMYLLRSDVKSGRRNEAWISYNSS-THNPSVAFTGFRNN 86 (148)
Q Consensus 9 l~n~~~~n~~vAVEFDT~~n~~Dp~~nHVgI~i-ns~~S~~~~~~~~~~l~~G~~~~vwI~Yd~~-~~~L~V~l~~~~~~ 86 (148)
+||.-.-|.++|||.=--.= |--.|+ |+..+++-. ++..|+|.+.|+|-|.=|.. +|.|.|.-
T Consensus 877 ~fn~gd~ndfi~velvnG~i-------hYtfdlg~gp~~~k~~--sr~hlnDnrWHnV~I~rd~~~~HtL~vD~------ 941 (1591)
T KOG3514|consen 877 LFNSGDGNDFIAVELVNGYI-------HYTFDLGNGPTSMKGP--SRQHLNDNRWHNVLIYRDKTNTHTLKVDN------ 941 (1591)
T ss_pred EecCCCCCceEEEEEeCcEE-------EEEEEcCCCcccccCc--ccCcCccccceeEEEEcCCCCceEEEecC------
Confidence 35666778899999644221 333333 222222221 14577888999999988843 33444421
Q ss_pred CcccceeeEEecCCcCCCCeeEEE
Q 032050 87 SVVMQGLGYQVDLRQHLPEFVTFG 110 (148)
Q Consensus 87 ~~~~p~Ls~~vdL~~~L~~~v~vG 110 (148)
+.+...+...++|. |...+|+|
T Consensus 942 s~~t~~~~g~~~l~--l~g~LyiG 963 (1591)
T KOG3514|consen 942 SSTTQIIDGAVNLD--LKGKLYIG 963 (1591)
T ss_pred ceEEEEecCccccc--cccceecc
Confidence 22444554433322 33455666
No 14
>PF13619 KTSC: KTSC domain
Probab=33.74 E-value=52 Score=20.50 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=16.1
Q ss_pred EEEEEEeCCCCceEEEEEc
Q 032050 64 EAWISYNSSTHNPSVAFTG 82 (148)
Q Consensus 64 ~vwI~Yd~~~~~L~V~l~~ 82 (148)
-..|.||..++.|.|.+..
T Consensus 6 I~~v~Yd~~~~~L~V~F~~ 24 (60)
T PF13619_consen 6 IRSVGYDPETRTLEVEFKS 24 (60)
T ss_pred ccEEeECCCCCEEEEEEcC
Confidence 3469999999999999954
No 15
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=30.31 E-value=76 Score=22.30 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=19.6
Q ss_pred ceeEEEEEEeCCCCceEEEEEcC
Q 032050 61 RRNEAWISYNSSTHNPSVAFTGF 83 (148)
Q Consensus 61 ~~~~vwI~Yd~~~~~L~V~l~~~ 83 (148)
+.+...|.|++.+.+|.|++-..
T Consensus 3 G~l~~sl~Y~~~~~~L~V~Vi~a 25 (124)
T cd08389 3 GDLDVAFEYDPSARKLTVTVIRA 25 (124)
T ss_pred EEEEEEEEECCCCCEEEEEEEEe
Confidence 46788999999999999998643
No 16
>PF11225 DUF3024: Protein of unknown function (DUF3024); InterPro: IPR021388 This entry is represented by Bacteriophage 933W, L0084. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.28 E-value=49 Score=20.64 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=18.1
Q ss_pred EEEEEEeCCCCceEEEEEcCC
Q 032050 64 EAWISYNSSTHNPSVAFTGFR 84 (148)
Q Consensus 64 ~vwI~Yd~~~~~L~V~l~~~~ 84 (148)
.|+|.|+..++...++....+
T Consensus 6 iAk~~~~~~~~~W~lyw~~~~ 26 (57)
T PF11225_consen 6 IAKLTFDKTTGCWKLYWMDHD 26 (57)
T ss_pred eEEEEEeCCCCEEEEEEECCC
Confidence 589999999999999987554
No 17
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=28.23 E-value=2.1e+02 Score=19.82 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=20.2
Q ss_pred ccCCCceeEEEEEEeCCCCceEEEEEc
Q 032050 56 DVKSGRRNEAWISYNSSTHNPSVAFTG 82 (148)
Q Consensus 56 ~l~~G~~~~vwI~Yd~~~~~L~V~l~~ 82 (148)
.+.+|+.|.+.|.++. +.+.+++..
T Consensus 76 ~v~dg~Wh~v~i~~~~--~~~~l~VD~ 100 (151)
T cd00110 76 PLNDGQWHSVSVERNG--RSVTLSVDG 100 (151)
T ss_pred ccCCCCEEEEEEEECC--CEEEEEECC
Confidence 4889999999999998 456666653
No 18
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=27.16 E-value=1e+02 Score=23.85 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=24.8
Q ss_pred ccccCCCceeEEEEEEeCCCCceEEEEE
Q 032050 54 RSDVKSGRRNEAWISYNSSTHNPSVAFT 81 (148)
Q Consensus 54 ~~~l~~G~~~~vwI~Yd~~~~~L~V~l~ 81 (148)
+..+.+|+.+++-++||+.+..+.+++.
T Consensus 84 ~~~~~~g~W~hvc~tw~~~~g~~~lyvn 111 (206)
T smart00159 84 PVPESDGKWHHICTTWESSSGIAELWVD 111 (206)
T ss_pred cccccCCceEEEEEEEECCCCcEEEEEC
Confidence 3467899999999999999999999996
No 19
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=25.77 E-value=79 Score=19.07 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=14.4
Q ss_pred EEEEeCCCCceEEEEE
Q 032050 66 WISYNSSTHNPSVAFT 81 (148)
Q Consensus 66 wI~Yd~~~~~L~V~l~ 81 (148)
||.||.....|-++|.
T Consensus 2 ki~YD~~~D~lyi~l~ 17 (50)
T PF10049_consen 2 KIEYDPEADALYIRLS 17 (50)
T ss_pred EeEEcCcCCEEEEEEC
Confidence 7999999999999994
No 20
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=25.71 E-value=45 Score=31.88 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=21.6
Q ss_pred CCCCeEEEEEeCccCCCCCCC-Cceeeec
Q 032050 14 LPRPHGSLESDVYVNSWDPTI-SKLLVSI 41 (148)
Q Consensus 14 ~~n~~vAVEFDT~~n~~Dp~~-nHVgI~i 41 (148)
....+.+||||-..|.++.++ +|-|--+
T Consensus 666 ~~~~f~~~~fd~l~n~~~~~g~~~rgy~l 694 (819)
T PRK08493 666 TEKGFKAIEFDDLENYYTNDGSNHRGYEL 694 (819)
T ss_pred cccCcceeecccccccCCCCCccccCeee
Confidence 566789999999999876654 6777555
No 21
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=25.25 E-value=1.1e+02 Score=20.91 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=18.9
Q ss_pred eeEEEEEEeCCCCceEEEEEcC
Q 032050 62 RNEAWISYNSSTHNPSVAFTGF 83 (148)
Q Consensus 62 ~~~vwI~Yd~~~~~L~V~l~~~ 83 (148)
.+.+.+.|+..+..|.|.+-..
T Consensus 2 ~l~~~l~y~~~~~~L~V~v~~a 23 (123)
T cd08390 2 RLWFSVQYDLEEEQLTVSLIKA 23 (123)
T ss_pred EEEEEEEECCCCCEEEEEEEEe
Confidence 5788999999999999998644
No 22
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=24.32 E-value=1.2e+02 Score=21.52 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=20.3
Q ss_pred CceeEEEEEEeCCCCceEEEEE
Q 032050 60 GRRNEAWISYNSSTHNPSVAFT 81 (148)
Q Consensus 60 G~~~~vwI~Yd~~~~~L~V~l~ 81 (148)
|+.+++-+.||+....+++++.
T Consensus 61 ~~W~hva~v~d~~~g~~~lYvn 82 (133)
T smart00560 61 GVWVHLAGVYDGGAGKLSLYVN 82 (133)
T ss_pred CCEEEEEEEEECCCCeEEEEEC
Confidence 8899999999999889999996
No 23
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=22.80 E-value=1.3e+02 Score=20.79 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=18.4
Q ss_pred eeEEEEEEeCCCCceEEEEEcC
Q 032050 62 RNEAWISYNSSTHNPSVAFTGF 83 (148)
Q Consensus 62 ~~~vwI~Yd~~~~~L~V~l~~~ 83 (148)
.+.+.+.|++...+|.|.+...
T Consensus 2 ~i~~~l~y~~~~~~L~V~v~~a 23 (134)
T cd00276 2 ELLLSLSYLPTAERLTVVVLKA 23 (134)
T ss_pred eEEEEEEeeCCCCEEEEEEEEe
Confidence 4678899999999999998643
No 24
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=22.18 E-value=1.3e+02 Score=22.96 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=23.9
Q ss_pred ccCCCceeEEEEEEeCCCCceEEEEEc
Q 032050 56 DVKSGRRNEAWISYNSSTHNPSVAFTG 82 (148)
Q Consensus 56 ~l~~G~~~~vwI~Yd~~~~~L~V~l~~ 82 (148)
...+|+.+++-++||+.+.++.+++.-
T Consensus 86 ~~~~g~W~hv~~t~d~~~g~~~lyvnG 112 (201)
T cd00152 86 PESDGAWHHICVTWESTSGIAELWVNG 112 (201)
T ss_pred cCCCCCEEEEEEEEECCCCcEEEEECC
Confidence 448899999999999999999999963
No 25
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=21.16 E-value=1.6e+02 Score=20.72 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=19.4
Q ss_pred ceeEEEEEEeCCCCceEEEEEcC
Q 032050 61 RRNEAWISYNSSTHNPSVAFTGF 83 (148)
Q Consensus 61 ~~~~vwI~Yd~~~~~L~V~l~~~ 83 (148)
+.+...+.|++...+|.|++-..
T Consensus 3 G~l~~~l~y~~~~~~L~V~Vi~a 25 (128)
T cd08388 3 GTLFFSLRYNSEKKALLVNIIEC 25 (128)
T ss_pred eEEEEEEEEECCCCEEEEEEEEe
Confidence 46788899999999999998643
No 26
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=20.59 E-value=1.6e+02 Score=20.03 Aligned_cols=22 Identities=27% Similarity=0.190 Sum_probs=18.4
Q ss_pred eeEEEEEEeCCCCceEEEEEcC
Q 032050 62 RNEAWISYNSSTHNPSVAFTGF 83 (148)
Q Consensus 62 ~~~vwI~Yd~~~~~L~V~l~~~ 83 (148)
.+...+.|+....+|.|++-..
T Consensus 2 ~i~~~l~y~~~~~~L~V~v~~a 23 (123)
T cd08521 2 EIEFSLSYNYKTGSLEVHIKEC 23 (123)
T ss_pred eEEEEEEEeCCCCEEEEEEEEe
Confidence 4678899999999999998644
Done!