Query 032051
Match_columns 148
No_of_seqs 127 out of 1058
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:56:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 7.3E-46 1.6E-50 286.1 16.3 134 15-148 1-134 (178)
2 COG1611 Predicted Rossmann fol 100.0 4E-38 8.7E-43 247.8 16.7 139 9-148 9-150 (205)
3 TIGR00725 conserved hypothetic 100.0 1.4E-36 3E-41 230.6 15.3 122 14-148 1-123 (159)
4 PF03641 Lysine_decarbox: Poss 100.0 1.4E-29 3.1E-34 186.7 11.1 90 59-148 1-92 (133)
5 TIGR00732 dprA DNA protecting 99.7 2E-15 4.3E-20 120.1 14.5 123 15-146 45-187 (220)
6 PF02481 DNA_processg_A: DNA r 99.4 2.5E-12 5.5E-17 101.7 12.7 124 14-146 44-187 (212)
7 PRK10736 hypothetical protein; 99.3 1.2E-10 2.5E-15 99.2 14.1 123 15-146 108-250 (374)
8 COG0758 Smf Predicted Rossmann 99.1 8.8E-10 1.9E-14 93.1 12.6 123 15-146 112-253 (350)
9 PF12694 MoCo_carrier: Putativ 97.8 0.00037 8.1E-09 52.3 10.0 92 49-147 1-97 (145)
10 PF06908 DUF1273: Protein of u 96.6 0.18 3.9E-06 39.0 14.2 115 28-147 21-167 (177)
11 PF05014 Nuc_deoxyrib_tr: Nucl 96.5 0.0071 1.5E-07 42.7 5.5 44 98-147 49-96 (113)
12 PF10686 DUF2493: Protein of u 95.3 0.25 5.3E-06 32.7 8.4 62 16-80 5-67 (71)
13 PRK10565 putative carbohydrate 94.0 0.39 8.5E-06 42.7 8.8 95 45-145 254-352 (508)
14 COG0707 MurG UDP-N-acetylgluco 92.8 0.66 1.4E-05 39.5 8.1 40 98-147 240-279 (357)
15 PRK13660 hypothetical protein; 91.5 5.5 0.00012 31.0 15.0 106 36-147 33-167 (182)
16 TIGR03590 PseG pseudaminic aci 91.2 3.2 6.9E-05 33.7 10.1 36 101-147 232-267 (279)
17 TIGR01426 MGT glycosyltransfer 90.7 2.6 5.6E-05 35.3 9.4 31 106-146 287-317 (392)
18 PF04101 Glyco_tran_28_C: Glyc 90.7 0.26 5.6E-06 36.4 3.0 32 105-146 67-98 (167)
19 TIGR01133 murG undecaprenyldip 90.3 8.3 0.00018 31.1 11.8 33 105-147 245-277 (348)
20 PRK12446 undecaprenyldiphospho 89.6 6 0.00013 33.2 10.7 31 106-146 248-278 (352)
21 PF13528 Glyco_trans_1_3: Glyc 88.7 4 8.7E-05 32.8 8.7 84 45-146 192-276 (318)
22 PRK00025 lpxB lipid-A-disaccha 87.7 11 0.00023 31.1 10.9 32 104-146 255-286 (380)
23 PLN02605 monogalactosyldiacylg 86.8 7.9 0.00017 32.4 9.7 35 103-147 275-309 (382)
24 cd03785 GT1_MurG MurG is an N- 84.4 20 0.00043 28.9 12.1 35 102-146 244-278 (350)
25 COG2185 Sbm Methylmalonyl-CoA 84.2 6.3 0.00014 29.6 7.0 60 13-77 11-70 (143)
26 COG3613 Nucleoside 2-deoxyribo 83.8 2.9 6.3E-05 32.4 5.2 42 100-147 58-105 (172)
27 PF11071 DUF2872: Protein of u 83.6 13 0.00028 27.7 8.3 44 101-147 63-107 (141)
28 TIGR00196 yjeF_cterm yjeF C-te 83.6 9.6 0.00021 30.6 8.4 41 102-145 84-124 (272)
29 cd03784 GT1_Gtf_like This fami 83.3 8.7 0.00019 31.9 8.4 31 106-146 300-330 (401)
30 TIGR00215 lpxB lipid-A-disacch 81.0 24 0.00053 29.8 10.3 29 107-146 264-292 (385)
31 COG1832 Predicted CoA-binding 80.5 3.9 8.4E-05 30.6 4.6 41 6-51 8-48 (140)
32 COG1597 LCB5 Sphingosine kinas 80.4 3.8 8.2E-05 34.0 5.1 47 33-80 45-92 (301)
33 COG1819 Glycosyl transferases, 79.6 18 0.00039 31.2 9.1 88 42-146 234-326 (406)
34 TIGR03646 YtoQ_fam YtoQ family 79.4 24 0.00052 26.4 8.5 44 101-147 66-110 (144)
35 COG0063 Predicted sugar kinase 78.1 27 0.0006 28.9 9.4 98 44-145 31-134 (284)
36 smart00046 DAGKc Diacylglycero 76.3 3.9 8.4E-05 29.2 3.5 33 114-146 52-84 (124)
37 PRK08105 flavodoxin; Provision 76.1 4.1 8.9E-05 30.2 3.7 34 14-50 1-34 (149)
38 cd00411 Asparaginase Asparagin 75.8 7.7 0.00017 32.5 5.6 35 109-146 77-111 (323)
39 PRK13608 diacylglycerol glucos 74.2 4.1 8.8E-05 34.4 3.7 38 100-147 263-300 (391)
40 TIGR00519 asnASE_I L-asparagin 74.0 9.4 0.0002 32.2 5.8 38 106-146 73-110 (336)
41 PRK09004 FMN-binding protein M 73.9 4.4 9.6E-05 29.9 3.4 34 14-50 1-34 (146)
42 cd01171 YXKO-related B.subtili 72.9 17 0.00038 28.6 6.8 96 45-145 8-109 (254)
43 PF09152 DUF1937: Domain of un 72.7 5.1 0.00011 29.1 3.3 39 102-146 71-114 (116)
44 PF00781 DAGK_cat: Diacylglyce 72.1 5.2 0.00011 28.4 3.3 25 107-131 48-74 (130)
45 COG1057 NadD Nicotinic acid mo 71.9 6.2 0.00013 31.0 3.9 34 13-46 1-34 (197)
46 TIGR00661 MJ1255 conserved hyp 71.8 40 0.00088 27.4 9.0 36 102-147 239-274 (321)
47 COG3660 Predicted nucleoside-d 70.4 48 0.001 27.9 8.9 31 107-146 241-271 (329)
48 PF14359 DUF4406: Domain of un 68.3 12 0.00027 25.6 4.4 38 101-144 50-90 (92)
49 PRK13337 putative lipid kinase 68.1 15 0.00034 29.9 5.7 44 36-80 47-92 (304)
50 cd07025 Peptidase_S66 LD-Carbo 67.3 49 0.0011 27.0 8.5 45 99-144 46-95 (282)
51 PF00781 DAGK_cat: Diacylglyce 66.8 11 0.00023 26.8 4.0 32 48-80 57-91 (130)
52 KOG2683 Sirtuin 4 and related 65.8 9 0.00019 31.6 3.7 41 105-148 241-281 (305)
53 COG1010 CobJ Precorrin-3B meth 65.3 76 0.0016 26.0 10.6 111 33-147 60-194 (249)
54 KOG4022 Dihydropteridine reduc 65.2 48 0.001 26.1 7.5 70 45-121 3-83 (236)
55 PF00861 Ribosomal_L18p: Ribos 64.8 30 0.00066 24.8 6.0 41 32-72 70-118 (119)
56 PRK00726 murG undecaprenyldiph 64.7 17 0.00037 29.7 5.3 38 99-146 241-278 (357)
57 PRK13609 diacylglycerol glucos 64.6 12 0.00026 31.0 4.4 36 102-147 265-300 (380)
58 PF01256 Carb_kinase: Carbohyd 64.5 71 0.0015 25.6 8.8 74 49-126 2-82 (242)
59 PRK11914 diacylglycerol kinase 64.3 77 0.0017 25.8 10.7 35 13-48 7-41 (306)
60 cd07062 Peptidase_S66_mccF_lik 63.8 70 0.0015 26.4 8.9 33 111-144 67-99 (308)
61 PRK02645 ppnK inorganic polyph 63.6 11 0.00023 31.4 4.0 88 13-148 2-89 (305)
62 TIGR02153 gatD_arch glutamyl-t 63.2 21 0.00045 31.1 5.8 34 111-146 140-173 (404)
63 PRK04183 glutamyl-tRNA(Gln) am 63.0 22 0.00048 31.1 6.0 33 111-146 153-185 (419)
64 PRK09461 ansA cytoplasmic aspa 62.7 23 0.0005 29.8 5.9 37 108-146 79-115 (335)
65 PRK05723 flavodoxin; Provision 62.7 10 0.00022 28.2 3.4 33 15-50 1-33 (151)
66 COG0716 FldA Flavodoxins [Ener 61.6 12 0.00026 27.4 3.6 33 14-49 1-33 (151)
67 PRK06973 nicotinic acid mononu 61.6 15 0.00032 29.7 4.3 36 9-44 16-51 (243)
68 PRK11914 diacylglycerol kinase 61.0 21 0.00046 29.1 5.3 44 34-79 52-96 (306)
69 COG0256 RplR Ribosomal protein 60.8 28 0.00062 25.5 5.3 40 32-71 76-123 (125)
70 PRK06756 flavodoxin; Provision 60.0 18 0.00039 26.1 4.3 33 15-50 2-34 (148)
71 PTZ00032 60S ribosomal protein 58.8 17 0.00038 28.9 4.1 40 32-71 162-209 (211)
72 PRK14569 D-alanyl-alanine synt 58.2 31 0.00067 28.1 5.8 37 14-50 3-39 (296)
73 TIGR03492 conserved hypothetic 58.0 1.2E+02 0.0026 25.9 10.4 31 105-146 291-321 (396)
74 PRK13609 diacylglycerol glucos 56.9 23 0.00049 29.3 4.8 35 11-48 1-35 (380)
75 KOG1201 Hydroxysteroid 17-beta 55.6 17 0.00036 30.6 3.7 31 44-75 37-67 (300)
76 TIGR00060 L18_bact ribosomal p 55.3 36 0.00079 24.5 5.0 40 32-71 65-112 (114)
77 PRK03372 ppnK inorganic polyph 55.1 98 0.0021 25.9 8.3 62 11-77 2-103 (306)
78 PF00710 Asparaginase: Asparag 54.8 29 0.00063 28.8 5.1 36 109-146 71-106 (313)
79 PRK00861 putative lipid kinase 54.7 25 0.00055 28.5 4.7 43 36-80 47-90 (300)
80 TIGR03702 lip_kinase_YegS lipi 54.7 28 0.0006 28.3 4.9 43 36-79 42-88 (293)
81 TIGR00640 acid_CoA_mut_C methy 54.6 55 0.0012 23.8 6.0 47 30-77 14-60 (132)
82 TIGR03702 lip_kinase_YegS lipi 54.3 43 0.00092 27.2 6.0 31 114-146 55-86 (293)
83 PHA03392 egt ecdysteroid UDP-g 53.4 71 0.0015 28.4 7.6 125 6-146 256-390 (507)
84 PRK01231 ppnK inorganic polyph 53.0 1E+02 0.0022 25.6 8.0 32 12-46 2-33 (295)
85 cd00587 HCP_like The HCP famil 52.8 36 0.00079 28.0 5.2 42 11-54 91-132 (258)
86 PF00106 adh_short: short chai 52.2 23 0.00049 25.3 3.7 86 47-134 2-111 (167)
87 PRK06703 flavodoxin; Provision 52.1 22 0.00049 25.7 3.6 32 15-49 2-33 (151)
88 PRK08887 nicotinic acid mononu 51.9 21 0.00045 27.1 3.5 24 14-37 1-24 (174)
89 PRK09271 flavodoxin; Provision 51.8 24 0.00051 26.1 3.8 31 16-49 2-32 (160)
90 PRK04539 ppnK inorganic polyph 51.5 1.1E+02 0.0025 25.3 8.1 62 12-78 3-100 (296)
91 PRK13054 lipid kinase; Reviewe 51.4 35 0.00076 27.8 5.0 44 36-80 46-93 (300)
92 COG0794 GutQ Predicted sugar p 51.2 1.2E+02 0.0026 24.0 10.5 88 37-146 30-119 (202)
93 COG0252 AnsB L-asparaginase/ar 50.9 46 0.001 28.5 5.8 32 112-146 102-133 (351)
94 PF05159 Capsule_synth: Capsul 50.7 21 0.00044 28.5 3.5 32 105-147 194-225 (269)
95 PF09314 DUF1972: Domain of un 50.3 35 0.00076 26.5 4.6 39 14-52 1-41 (185)
96 PRK12361 hypothetical protein; 50.3 37 0.00081 30.2 5.4 43 35-79 286-329 (547)
97 PRK02155 ppnK NAD(+)/NADH kina 50.1 1.3E+02 0.0029 24.7 8.3 61 13-77 4-94 (291)
98 PRK03378 ppnK inorganic polyph 49.9 1.4E+02 0.0031 24.7 8.4 61 12-77 3-94 (292)
99 PRK13054 lipid kinase; Reviewe 49.7 55 0.0012 26.6 5.9 35 110-146 56-90 (300)
100 COG4671 Predicted glycosyl tra 49.6 53 0.0011 28.6 5.9 93 44-146 219-320 (400)
101 KOG2968 Predicted esterase of 49.5 12 0.00026 36.1 2.2 48 36-85 829-887 (1158)
102 PF02729 OTCace_N: Aspartate/o 49.3 73 0.0016 23.4 6.0 63 63-144 58-120 (142)
103 PRK12359 flavodoxin FldB; Prov 49.2 57 0.0012 24.9 5.6 12 68-79 110-121 (172)
104 smart00046 DAGKc Diacylglycero 49.1 45 0.00097 23.6 4.7 33 46-80 51-87 (124)
105 COG3967 DltE Short-chain dehyd 49.0 24 0.00053 28.6 3.6 28 48-76 8-35 (245)
106 PLN02958 diacylglycerol kinase 48.8 43 0.00093 29.7 5.5 44 35-79 157-207 (481)
107 COG0300 DltE Short-chain dehyd 48.5 91 0.002 25.6 7.0 60 13-80 5-64 (265)
108 PF04230 PS_pyruv_trans: Polys 48.4 28 0.00061 26.3 3.8 40 109-148 62-107 (286)
109 COG1063 Tdh Threonine dehydrog 48.3 1E+02 0.0022 25.8 7.5 83 46-131 170-259 (350)
110 TIGR01007 eps_fam capsular exo 48.2 65 0.0014 24.3 5.8 41 7-50 10-50 (204)
111 COG0593 DnaA ATPase involved i 48.0 89 0.0019 27.4 7.2 103 33-145 96-213 (408)
112 PF13380 CoA_binding_2: CoA bi 47.8 41 0.00089 23.7 4.3 31 15-50 1-31 (116)
113 COG0062 Uncharacterized conser 47.0 57 0.0012 25.8 5.4 97 47-148 52-159 (203)
114 PRK05568 flavodoxin; Provision 46.7 35 0.00077 24.2 3.9 32 15-49 2-33 (142)
115 PRK13055 putative lipid kinase 46.7 44 0.00095 27.8 5.0 44 36-80 49-94 (334)
116 PF01820 Dala_Dala_lig_N: D-al 46.6 35 0.00076 24.1 3.8 36 15-50 1-36 (117)
117 PTZ00075 Adenosylhomocysteinas 45.9 84 0.0018 28.1 6.8 82 49-148 258-340 (476)
118 cd06353 PBP1_BmpA_Med_like Per 45.6 1.5E+02 0.0033 23.5 8.0 42 33-77 166-207 (258)
119 PRK13057 putative lipid kinase 45.6 30 0.00066 27.9 3.8 32 109-146 49-80 (287)
120 PRK10886 DnaA initiator-associ 45.5 1.4E+02 0.0031 23.1 8.1 30 29-58 25-54 (196)
121 CHL00139 rpl18 ribosomal prote 45.3 65 0.0014 22.9 5.0 40 32-71 60-107 (109)
122 cd01411 SIR2H SIR2H: Uncharact 45.2 27 0.00058 27.6 3.3 44 101-148 162-205 (225)
123 PRK13057 putative lipid kinase 45.0 54 0.0012 26.5 5.2 43 35-80 40-83 (287)
124 PF13614 AAA_31: AAA domain; P 44.8 62 0.0013 23.0 5.0 33 15-50 1-33 (157)
125 PRK01372 ddl D-alanine--D-alan 43.9 43 0.00094 26.9 4.5 36 16-51 6-41 (304)
126 TIGR01754 flav_RNR ribonucleot 43.7 37 0.00081 24.3 3.7 31 16-49 2-32 (140)
127 PRK08862 short chain dehydroge 43.2 1.4E+02 0.0031 23.0 7.1 30 15-52 6-35 (227)
128 PRK00861 putative lipid kinase 43.1 73 0.0016 25.8 5.7 30 111-146 58-87 (300)
129 PRK06443 chorismate mutase; Va 42.9 79 0.0017 24.6 5.4 44 31-78 92-135 (177)
130 PRK11253 ldcA L,D-carboxypepti 42.8 2E+02 0.0042 23.9 9.1 38 99-137 49-92 (305)
131 cd06320 PBP1_allose_binding Pe 42.7 69 0.0015 24.7 5.3 34 109-147 56-89 (275)
132 PF02608 Bmp: Basic membrane p 42.7 1.2E+02 0.0025 24.8 6.9 46 33-79 175-222 (306)
133 PRK02645 ppnK inorganic polyph 42.3 1.8E+02 0.004 24.0 8.0 30 46-77 59-88 (305)
134 COG2081 Predicted flavoprotein 42.1 27 0.00058 30.6 3.0 27 48-76 6-32 (408)
135 PRK05593 rplR 50S ribosomal pr 41.9 49 0.0011 23.9 3.9 40 32-71 68-115 (117)
136 PRK13937 phosphoheptose isomer 41.4 70 0.0015 24.3 5.0 31 29-59 22-52 (188)
137 PRK02649 ppnK inorganic polyph 41.3 1.8E+02 0.004 24.2 7.8 32 14-48 1-32 (305)
138 PRK07308 flavodoxin; Validated 40.9 43 0.00092 24.1 3.6 31 16-49 3-33 (146)
139 PRK06703 flavodoxin; Provision 40.9 86 0.0019 22.6 5.3 9 67-75 110-118 (151)
140 PRK10886 DnaA initiator-associ 40.8 1.7E+02 0.0037 22.7 7.8 46 34-79 99-145 (196)
141 cd06313 PBP1_ABC_sugar_binding 40.6 76 0.0017 24.7 5.3 38 105-147 50-87 (272)
142 PRK14572 D-alanyl-alanine synt 40.6 65 0.0014 26.9 5.1 38 14-51 1-38 (347)
143 cd06300 PBP1_ABC_sugar_binding 40.2 77 0.0017 24.3 5.2 37 106-147 56-92 (272)
144 cd00432 Ribosomal_L18_L5e Ribo 40.1 81 0.0018 21.7 4.8 39 32-70 56-102 (103)
145 PRK13337 putative lipid kinase 39.8 82 0.0018 25.7 5.5 32 111-146 58-89 (304)
146 PF04016 DUF364: Domain of unk 39.6 44 0.00096 24.7 3.6 41 101-147 53-95 (147)
147 TIGR00147 lipid kinase, YegS/R 39.6 91 0.002 25.0 5.7 31 49-80 61-92 (293)
148 cd00952 CHBPH_aldolase Trans-o 39.5 1.8E+02 0.0039 24.0 7.6 68 15-83 44-116 (309)
149 PRK11780 isoprenoid biosynthes 39.4 33 0.00071 27.1 3.0 37 15-52 2-39 (217)
150 cd01408 SIRT1 SIRT1: Eukaryoti 38.9 27 0.00059 27.8 2.5 44 101-148 166-209 (235)
151 PF03358 FMN_red: NADPH-depend 38.7 89 0.0019 22.2 5.0 33 16-49 2-34 (152)
152 cd04260 AAK_AKi-DapG-BS AAK_AK 38.3 48 0.001 26.3 3.8 27 18-44 4-30 (244)
153 PRK09355 hydroxyethylthiazole 38.3 29 0.00064 27.9 2.6 36 107-145 51-89 (263)
154 TIGR01753 flav_short flavodoxi 38.1 1E+02 0.0022 21.4 5.2 7 69-75 109-115 (140)
155 PRK01966 ddl D-alanyl-alanine 38.1 73 0.0016 26.4 5.0 37 14-50 3-39 (333)
156 TIGR01182 eda Entner-Doudoroff 38.1 2E+02 0.0043 22.6 7.2 109 13-132 7-119 (204)
157 PF01965 DJ-1_PfpI: DJ-1/PfpI 38.0 30 0.00066 24.9 2.4 33 114-146 40-77 (147)
158 PF04127 DFP: DNA / pantothena 38.0 1.8E+02 0.0039 22.4 6.9 66 47-117 20-89 (185)
159 PF04412 DUF521: Protein of un 37.7 2.8E+02 0.006 24.2 12.8 131 11-146 178-326 (400)
160 PRK09267 flavodoxin FldA; Vali 37.6 45 0.00097 24.6 3.4 27 15-44 2-28 (169)
161 PRK14077 pnk inorganic polypho 37.4 1.9E+02 0.0041 23.9 7.3 59 14-78 10-96 (287)
162 COG1064 AdhP Zn-dependent alco 37.2 1.3E+02 0.0028 25.7 6.4 83 46-132 168-250 (339)
163 COG0112 GlyA Glycine/serine hy 37.1 34 0.00075 29.9 2.9 43 32-74 290-342 (413)
164 PRK04885 ppnK inorganic polyph 37.0 2.3E+02 0.005 23.1 7.9 56 16-77 2-68 (265)
165 PF12831 FAD_oxidored: FAD dep 36.9 26 0.00056 30.1 2.2 30 48-79 2-31 (428)
166 PF03129 HGTP_anticodon: Antic 36.9 1E+02 0.0023 20.0 4.8 58 17-77 2-59 (94)
167 PLN02945 nicotinamide-nucleoti 36.8 1.1E+02 0.0023 24.4 5.6 41 10-50 17-57 (236)
168 PRK03170 dihydrodipicolinate s 36.7 2.3E+02 0.0049 22.9 8.0 69 14-83 36-109 (292)
169 PRK13059 putative lipid kinase 36.7 47 0.001 27.0 3.6 33 110-146 56-88 (295)
170 PF13500 AAA_26: AAA domain; P 36.6 57 0.0012 24.5 3.9 26 110-135 129-154 (199)
171 PF13407 Peripla_BP_4: Peripla 36.5 79 0.0017 24.1 4.7 39 105-148 50-88 (257)
172 COG3573 Predicted oxidoreducta 36.3 93 0.002 27.3 5.4 83 47-137 141-244 (552)
173 TIGR01205 D_ala_D_alaTIGR D-al 35.9 55 0.0012 26.4 3.9 36 16-51 1-36 (315)
174 PRK07109 short chain dehydroge 35.7 1.6E+02 0.0036 24.1 6.8 55 14-76 8-62 (334)
175 PRK06300 enoyl-(acyl carrier p 35.7 56 0.0012 26.9 3.9 10 110-119 119-128 (299)
176 COG2242 CobL Precorrin-6B meth 35.6 56 0.0012 25.6 3.7 18 114-132 105-122 (187)
177 PRK11096 ansB L-asparaginase I 35.6 54 0.0012 27.9 3.9 35 109-146 99-133 (347)
178 smart00243 GAS2 Growth-Arrest- 35.4 43 0.00093 22.4 2.6 20 110-129 45-64 (73)
179 cd07225 Pat_PNPLA6_PNPLA7 Pata 35.4 43 0.00094 27.8 3.2 31 36-68 5-35 (306)
180 PRK14571 D-alanyl-alanine synt 35.4 90 0.0019 25.2 5.1 34 16-49 2-35 (299)
181 TIGR02690 resist_ArsH arsenica 35.3 96 0.0021 24.7 5.1 40 9-49 21-60 (219)
182 PF10432 bact-PGI_C: Bacterial 35.1 40 0.00086 25.2 2.7 49 29-81 2-56 (155)
183 PRK14557 pyrH uridylate kinase 34.9 75 0.0016 25.6 4.5 43 12-54 2-53 (247)
184 PRK03708 ppnK inorganic polyph 34.9 48 0.001 27.2 3.4 34 15-51 1-34 (277)
185 COG1597 LCB5 Sphingosine kinas 34.7 1.1E+02 0.0024 25.2 5.6 22 111-132 58-79 (301)
186 cd06318 PBP1_ABC_sugar_binding 34.7 1E+02 0.0022 23.7 5.1 37 106-147 51-87 (282)
187 PRK06924 short chain dehydroge 34.5 83 0.0018 24.0 4.6 30 14-51 1-30 (251)
188 PRK14568 vanB D-alanine--D-lac 34.5 80 0.0017 26.2 4.7 36 15-50 4-39 (343)
189 PLN02271 serine hydroxymethylt 34.4 45 0.00098 30.6 3.4 42 33-74 442-493 (586)
190 PRK00071 nadD nicotinic acid m 34.2 73 0.0016 24.4 4.2 29 14-42 3-31 (203)
191 PRK04155 chaperone protein Hch 34.1 42 0.00091 27.8 2.9 33 114-146 150-186 (287)
192 PF05690 ThiG: Thiazole biosyn 34.1 27 0.00059 28.5 1.7 92 36-147 113-204 (247)
193 COG0394 Wzb Protein-tyrosine-p 34.1 1.9E+02 0.0041 21.2 7.2 58 14-75 2-63 (139)
194 cd07227 Pat_Fungal_NTE1 Fungal 33.9 35 0.00075 28.0 2.4 30 37-68 1-30 (269)
195 PF13580 SIS_2: SIS domain; PD 33.9 1.4E+02 0.0029 21.4 5.3 44 34-77 91-137 (138)
196 PRK00208 thiG thiazole synthas 33.5 2.7E+02 0.0059 22.8 11.8 101 15-132 94-195 (250)
197 smart00870 Asparaginase Aspara 33.4 58 0.0013 27.2 3.7 35 110-146 77-111 (323)
198 COG0549 ArcC Carbamate kinase 33.4 1.3E+02 0.0028 25.4 5.6 27 93-119 208-234 (312)
199 cd07371 2A5CPDO_AB The alpha a 33.3 1.5E+02 0.0032 24.0 6.0 48 8-55 125-174 (268)
200 KOG1098 Putative SAM-dependent 32.9 1.3E+02 0.0028 28.3 6.0 48 28-76 12-75 (780)
201 PRK05476 S-adenosyl-L-homocyst 32.9 1.5E+02 0.0033 26.0 6.3 73 48-130 215-288 (425)
202 KOG0503 Asparaginase [Amino ac 32.8 69 0.0015 27.7 4.0 35 109-146 120-154 (368)
203 PRK12422 chromosomal replicati 32.8 3.1E+02 0.0068 24.0 8.3 104 33-145 120-240 (445)
204 PRK05749 3-deoxy-D-manno-octul 32.6 3E+02 0.0065 23.1 12.3 44 93-145 303-349 (425)
205 PRK05569 flavodoxin; Provision 32.5 75 0.0016 22.4 3.8 32 15-49 2-33 (141)
206 COG0794 GutQ Predicted sugar p 32.2 1.1E+02 0.0024 24.2 4.9 58 14-77 39-120 (202)
207 PF09818 ABC_ATPase: Predicted 32.1 32 0.0007 30.5 2.0 26 44-69 243-271 (448)
208 cd06309 PBP1_YtfQ_like Peripla 32.1 1.1E+02 0.0024 23.5 4.9 25 28-52 11-35 (273)
209 COG0703 AroK Shikimate kinase 32.0 1.6E+02 0.0035 22.7 5.6 91 39-131 66-166 (172)
210 PRK08339 short chain dehydroge 32.0 85 0.0018 24.6 4.3 10 111-120 86-95 (263)
211 KOG3614 Ca2+/Mg2+-permeable ca 32.0 1.8E+02 0.0039 29.5 7.0 56 15-70 119-176 (1381)
212 PF02187 GAS2: Growth-Arrest-S 31.8 29 0.00064 23.1 1.3 21 110-130 45-65 (73)
213 PRK06756 flavodoxin; Provision 31.7 1.4E+02 0.0031 21.3 5.2 13 63-75 107-119 (148)
214 PRK07035 short chain dehydroge 31.6 84 0.0018 24.0 4.2 29 15-51 9-37 (252)
215 COG1029 FwdB Formylmethanofura 31.5 1.4E+02 0.0031 26.1 5.7 60 3-64 38-97 (429)
216 PRK12361 hypothetical protein; 31.4 1.2E+02 0.0025 27.1 5.5 28 114-146 300-327 (547)
217 PRK14072 6-phosphofructokinase 31.4 2E+02 0.0044 25.1 6.8 56 17-76 72-138 (416)
218 PRK13059 putative lipid kinase 31.2 1.1E+02 0.0023 25.0 4.8 36 43-79 53-90 (295)
219 KOG3349 Predicted glycosyltran 31.2 2.5E+02 0.0054 21.7 7.9 39 15-55 4-47 (170)
220 cd02201 FtsZ_type1 FtsZ is a G 31.1 3E+02 0.0065 22.6 8.4 71 40-118 80-154 (304)
221 cd00763 Bacterial_PFK Phosphof 31.0 2.5E+02 0.0053 23.6 7.1 56 16-76 63-121 (317)
222 PLN00141 Tic62-NAD(P)-related 31.0 1.1E+02 0.0024 23.7 4.8 30 13-50 16-45 (251)
223 PRK08177 short chain dehydroge 30.7 1.1E+02 0.0023 23.1 4.5 29 15-51 2-30 (225)
224 TIGR00147 lipid kinase, YegS/R 30.6 71 0.0015 25.7 3.7 33 111-147 58-90 (293)
225 PRK07062 short chain dehydroge 30.5 90 0.002 24.1 4.2 29 15-51 9-37 (265)
226 PRK08303 short chain dehydroge 30.5 83 0.0018 25.6 4.1 15 36-50 22-36 (305)
227 PRK00207 sulfur transfer compl 30.4 1.5E+02 0.0032 21.3 5.0 33 16-49 2-34 (128)
228 PTZ00409 Sir2 (Silent Informat 30.4 40 0.00086 27.6 2.2 44 101-148 190-234 (271)
229 TIGR00520 asnASE_II L-asparagi 30.4 68 0.0015 27.3 3.6 33 111-146 106-138 (349)
230 PRK14075 pnk inorganic polypho 30.4 2.2E+02 0.0048 22.9 6.5 53 15-78 1-70 (256)
231 PF12641 Flavodoxin_3: Flavodo 30.4 1.6E+02 0.0034 22.2 5.3 55 13-68 66-121 (160)
232 PF03205 MobB: Molybdopterin g 30.3 81 0.0018 22.9 3.7 32 15-50 1-32 (140)
233 TIGR01752 flav_long flavodoxin 30.3 2E+02 0.0042 21.3 5.8 18 60-77 101-118 (167)
234 PRK06849 hypothetical protein; 30.2 90 0.002 26.2 4.4 34 12-53 2-35 (389)
235 KOG1014 17 beta-hydroxysteroid 30.2 77 0.0017 26.8 3.9 32 12-50 46-77 (312)
236 KOG1207 Diacetyl reductase/L-x 30.2 77 0.0017 25.3 3.6 30 47-77 9-38 (245)
237 cd04261 AAK_AKii-LysC-BS AAK_A 30.1 1.3E+02 0.0029 23.5 5.1 36 19-55 5-42 (239)
238 cd01413 SIR2_Af2 SIR2_Af2: Arc 30.1 35 0.00077 26.8 1.8 44 101-148 162-206 (222)
239 KOG1209 1-Acyl dihydroxyaceton 30.1 94 0.002 25.6 4.2 33 11-50 4-36 (289)
240 cd03133 GATase1_ES1 Type 1 glu 30.0 67 0.0015 25.4 3.4 13 111-124 83-95 (213)
241 PRK05579 bifunctional phosphop 29.9 3.7E+02 0.008 23.3 8.2 45 33-77 172-235 (399)
242 cd06311 PBP1_ABC_sugar_binding 29.9 1.7E+02 0.0037 22.4 5.7 37 106-147 56-92 (274)
243 PRK09536 btuD corrinoid ABC tr 29.7 1.2E+02 0.0026 26.2 5.2 71 57-127 277-355 (402)
244 PRK07152 nadD putative nicotin 29.7 81 0.0017 26.4 4.0 28 16-43 2-29 (342)
245 PF06849 DUF1246: Protein of u 29.6 1.4E+02 0.0031 21.9 4.7 61 61-121 11-75 (124)
246 PRK05866 short chain dehydroge 29.5 2.3E+02 0.0051 22.6 6.6 54 15-76 41-94 (293)
247 cd03148 GATase1_EcHsp31_like T 29.5 38 0.00083 27.0 1.9 33 114-146 99-135 (232)
248 PRK08589 short chain dehydroge 29.4 95 0.0021 24.3 4.2 30 15-52 7-36 (272)
249 cd06310 PBP1_ABC_sugar_binding 29.4 1.6E+02 0.0034 22.5 5.4 37 106-147 53-89 (273)
250 PF04722 Ssu72: Ssu72-like pro 29.4 1.1E+02 0.0024 24.2 4.3 34 15-55 2-36 (195)
251 KOG2467 Glycine/serine hydroxy 29.3 60 0.0013 28.6 3.1 36 33-68 328-373 (477)
252 cd04728 ThiG Thiazole synthase 29.2 3.2E+02 0.007 22.4 11.6 101 15-132 94-195 (248)
253 PRK05333 NAD-dependent deacety 29.1 39 0.00084 27.7 1.9 44 101-148 205-249 (285)
254 TIGR02076 pyrH_arch uridylate 29.1 86 0.0019 24.3 3.8 36 20-55 5-43 (221)
255 PF02502 LacAB_rpiB: Ribose/Ga 29.0 1.1E+02 0.0024 22.6 4.2 48 15-64 26-76 (140)
256 COG2145 ThiM Hydroxyethylthiaz 28.9 56 0.0012 27.0 2.8 41 102-145 47-90 (265)
257 cd06319 PBP1_ABC_sugar_binding 28.9 1.8E+02 0.0039 22.2 5.6 38 105-147 50-87 (277)
258 TIGR01832 kduD 2-deoxy-D-gluco 28.9 1E+02 0.0022 23.4 4.2 16 36-51 19-34 (248)
259 PF03853 YjeF_N: YjeF-related 28.8 1.3E+02 0.0028 22.4 4.7 33 12-49 23-55 (169)
260 PF00205 TPP_enzyme_M: Thiamin 28.8 2.1E+02 0.0045 20.1 6.4 22 101-123 69-90 (137)
261 PRK13146 hisH imidazole glycer 28.8 1.8E+02 0.004 22.4 5.6 10 109-118 151-160 (209)
262 cd03147 GATase1_Ydr533c_like T 28.8 40 0.00086 26.8 1.9 33 114-146 97-133 (231)
263 cd00363 PFK Phosphofructokinas 28.7 3.6E+02 0.0077 22.7 9.9 34 111-145 93-126 (338)
264 PRK12824 acetoacetyl-CoA reduc 28.7 1.2E+02 0.0027 22.7 4.6 31 15-53 3-33 (245)
265 PRK05993 short chain dehydroge 28.6 1.2E+02 0.0027 23.7 4.8 30 15-52 5-34 (277)
266 cd06308 PBP1_sensor_kinase_lik 28.5 1.5E+02 0.0032 22.8 5.1 35 108-147 54-88 (270)
267 PF07279 DUF1442: Protein of u 28.5 3.1E+02 0.0068 22.0 7.9 82 59-147 58-149 (218)
268 cd06312 PBP1_ABC_sugar_binding 28.4 1.7E+02 0.0037 22.4 5.5 37 106-147 53-89 (271)
269 PF12146 Hydrolase_4: Putative 28.3 1.7E+02 0.0038 19.0 5.4 37 11-51 12-48 (79)
270 TIGR00642 mmCoA_mut_beta methy 28.3 1.1E+02 0.0024 28.2 4.8 45 13-61 545-589 (619)
271 PRK12367 short chain dehydroge 28.1 1E+02 0.0022 24.2 4.1 29 47-76 16-44 (245)
272 PRK14138 NAD-dependent deacety 28.1 47 0.001 26.6 2.2 44 101-148 169-213 (244)
273 CHL00200 trpA tryptophan synth 28.1 3.3E+02 0.0072 22.1 8.1 51 94-145 150-207 (263)
274 PRK07677 short chain dehydroge 28.0 1.1E+02 0.0024 23.4 4.3 15 36-50 15-29 (252)
275 PRK06505 enoyl-(acyl carrier p 27.9 1.1E+02 0.0025 24.1 4.5 17 36-52 23-39 (271)
276 PRK12481 2-deoxy-D-gluconate 3 27.9 1E+02 0.0022 23.8 4.1 29 15-51 9-37 (251)
277 cd05009 SIS_GlmS_GlmD_2 SIS (S 27.8 2.2E+02 0.0047 19.9 7.7 31 35-67 3-33 (153)
278 cd06305 PBP1_methylthioribose_ 27.8 1.6E+02 0.0035 22.4 5.2 37 106-147 51-87 (273)
279 PRK08569 rpl18p 50S ribosomal 27.8 1.6E+02 0.0035 23.2 5.1 40 32-71 79-128 (193)
280 PRK08979 acetolactate synthase 27.8 3.9E+02 0.0084 23.9 8.2 81 34-122 195-284 (572)
281 TIGR01501 MthylAspMutase methy 27.8 2.5E+02 0.0054 20.6 6.4 46 31-77 14-59 (134)
282 PRK03600 nrdI ribonucleotide r 27.6 1.1E+02 0.0024 22.3 4.0 35 7-41 66-100 (134)
283 COG4752 Uncharacterized protei 27.6 64 0.0014 24.8 2.7 32 101-132 124-155 (190)
284 PLN02494 adenosylhomocysteinas 27.6 2.2E+02 0.0048 25.5 6.4 72 48-129 257-329 (477)
285 PRK07984 enoyl-(acyl carrier p 27.5 1.2E+02 0.0026 23.9 4.5 16 36-51 22-37 (262)
286 COG0502 BioB Biotin synthase a 27.3 2.3E+02 0.0051 24.2 6.3 61 87-147 165-232 (335)
287 cd06301 PBP1_rhizopine_binding 27.3 1.7E+02 0.0036 22.3 5.2 36 107-147 53-88 (272)
288 PRK05854 short chain dehydroge 27.3 1.1E+02 0.0023 24.9 4.3 17 36-52 28-44 (313)
289 PRK09072 short chain dehydroge 27.3 1.1E+02 0.0025 23.6 4.2 15 36-50 19-33 (263)
290 cd06317 PBP1_ABC_sugar_binding 27.2 1.5E+02 0.0033 22.5 5.0 37 106-147 52-88 (275)
291 cd05213 NAD_bind_Glutamyl_tRNA 27.1 2.7E+02 0.0059 22.8 6.6 36 108-147 236-271 (311)
292 PRK15454 ethanol dehydrogenase 27.0 2.3E+02 0.0051 24.2 6.4 13 109-121 105-117 (395)
293 KOG0832 Mitochondrial/chloropl 27.0 2.4E+02 0.0051 23.1 6.0 45 29-74 91-136 (251)
294 COG3604 FhlA Transcriptional r 26.8 1.1E+02 0.0024 27.8 4.5 44 103-147 237-281 (550)
295 PF00106 adh_short: short chai 26.8 2.3E+02 0.0049 19.9 9.8 25 15-47 1-25 (167)
296 PRK09860 putative alcohol dehy 26.7 3.7E+02 0.0081 22.8 7.6 13 109-121 87-99 (383)
297 PRK10653 D-ribose transporter 26.6 2.2E+02 0.0047 22.4 5.9 36 14-51 26-61 (295)
298 cd08185 Fe-ADH1 Iron-containin 26.5 2.5E+02 0.0055 23.6 6.5 13 109-121 82-94 (380)
299 COG1028 FabG Dehydrogenases wi 26.5 1.1E+02 0.0025 23.2 4.1 29 14-50 5-33 (251)
300 cd00401 AdoHcyase S-adenosyl-L 26.5 2.3E+02 0.0049 24.8 6.3 71 47-127 204-274 (413)
301 PRK05671 aspartate-semialdehyd 26.4 1E+02 0.0022 26.0 4.0 30 11-48 1-30 (336)
302 PRK03767 NAD(P)H:quinone oxido 26.4 1.1E+02 0.0023 23.4 3.8 32 15-49 2-34 (200)
303 cd08175 G1PDH Glycerol-1-phosp 26.3 1.8E+02 0.0039 24.2 5.5 32 110-147 80-111 (348)
304 PRK07102 short chain dehydroge 26.3 1.1E+02 0.0024 23.2 4.0 28 15-50 2-29 (243)
305 TIGR02482 PFKA_ATP 6-phosphofr 26.3 2.5E+02 0.0054 23.4 6.3 55 18-76 64-121 (301)
306 cd01410 SIRT7 SIRT7: Eukaryoti 26.3 85 0.0018 24.4 3.3 44 101-148 146-190 (206)
307 PRK08862 short chain dehydroge 26.2 1.1E+02 0.0023 23.6 3.9 29 47-76 7-35 (227)
308 PF08351 DUF1726: Domain of un 26.2 53 0.0012 22.5 1.9 53 62-116 30-90 (92)
309 cd06316 PBP1_ABC_sugar_binding 26.2 3.2E+02 0.0069 21.3 8.2 33 16-50 1-33 (294)
310 cd04246 AAK_AK-DapG-like AAK_A 26.0 1.8E+02 0.0039 22.8 5.2 33 20-53 6-40 (239)
311 PF00464 SHMT: Serine hydroxym 25.9 43 0.00092 29.2 1.7 44 32-75 306-359 (399)
312 TIGR03325 BphB_TodD cis-2,3-di 25.9 1.2E+02 0.0027 23.4 4.2 10 111-120 80-89 (262)
313 PF10727 Rossmann-like: Rossma 25.8 1.1E+02 0.0023 22.2 3.6 30 12-50 8-37 (127)
314 cd06281 PBP1_LacI_like_5 Ligan 25.8 2E+02 0.0044 21.9 5.4 23 29-51 12-34 (269)
315 COG2085 Predicted dinucleotide 25.8 1.7E+02 0.0037 23.4 4.9 31 14-53 1-31 (211)
316 cd01407 SIR2-fam SIR2 family o 25.8 78 0.0017 24.6 3.0 44 101-148 158-202 (218)
317 cd06322 PBP1_ABC_sugar_binding 25.7 1.9E+02 0.0042 21.9 5.3 33 17-51 2-34 (267)
318 PRK13234 nifH nitrogenase redu 25.7 1.1E+02 0.0024 24.9 4.1 35 11-49 1-35 (295)
319 PRK07063 short chain dehydroge 25.6 1.3E+02 0.0028 23.1 4.3 28 15-50 8-35 (260)
320 PRK07791 short chain dehydroge 25.5 1.2E+02 0.0026 24.1 4.2 16 36-51 20-35 (286)
321 PRK08936 glucose-1-dehydrogena 25.4 1.5E+02 0.0032 22.9 4.6 35 8-50 1-35 (261)
322 cd01412 SIRT5_Af1_CobB SIRT5_A 25.4 1E+02 0.0022 24.0 3.7 43 102-148 156-199 (224)
323 PRK07085 diphosphate--fructose 25.4 3.8E+02 0.0083 24.4 7.7 34 45-78 71-110 (555)
324 PRK03708 ppnK inorganic polyph 25.3 3.8E+02 0.0082 21.9 7.8 30 46-78 59-88 (277)
325 PRK00625 shikimate kinase; Pro 25.2 3E+02 0.0065 20.7 6.1 76 39-117 67-149 (173)
326 cd08549 G1PDH_related Glycerol 25.0 1.2E+02 0.0026 25.2 4.2 32 110-147 80-111 (332)
327 TIGR00658 orni_carb_tr ornithi 25.0 3.7E+02 0.008 22.3 7.1 15 64-78 59-73 (304)
328 cd06314 PBP1_tmGBP Periplasmic 25.0 2.2E+02 0.0049 21.8 5.6 37 105-147 50-86 (271)
329 PRK08105 flavodoxin; Provision 25.0 1.9E+02 0.0041 21.1 4.8 26 50-75 89-120 (149)
330 cd01170 THZ_kinase 4-methyl-5- 25.0 3.5E+02 0.0076 21.4 6.9 18 55-72 16-33 (242)
331 PRK13055 putative lipid kinase 24.9 59 0.0013 27.0 2.3 21 111-132 60-80 (334)
332 cd08184 Fe-ADH3 Iron-containin 24.8 4.2E+02 0.0092 22.3 8.2 12 110-121 81-92 (347)
333 PRK06180 short chain dehydroge 24.8 1.2E+02 0.0026 23.8 4.0 31 14-52 4-34 (277)
334 PRK06139 short chain dehydroge 24.7 3.2E+02 0.0069 22.5 6.7 61 8-76 1-61 (330)
335 PRK00856 pyrB aspartate carbam 24.7 3.7E+02 0.008 22.3 7.0 17 63-79 64-80 (305)
336 PRK07814 short chain dehydroge 24.7 1.4E+02 0.003 23.2 4.3 29 15-51 11-39 (263)
337 PRK06171 sorbitol-6-phosphate 24.6 1.4E+02 0.003 23.0 4.3 30 46-76 10-39 (266)
338 PRK09426 methylmalonyl-CoA mut 24.4 3.6E+02 0.0078 25.4 7.5 47 30-77 594-640 (714)
339 COG3980 spsG Spore coat polysa 24.3 1.5E+02 0.0032 25.1 4.5 41 15-55 1-41 (318)
340 PRK08340 glucose-1-dehydrogena 24.3 1.3E+02 0.0028 23.3 4.0 16 36-51 14-29 (259)
341 PRK06114 short chain dehydroge 24.2 1.4E+02 0.0029 23.0 4.2 30 15-52 9-38 (254)
342 cd01539 PBP1_GGBP Periplasmic 24.2 2.2E+02 0.0047 22.6 5.4 38 105-147 52-89 (303)
343 KOG2585 Uncharacterized conser 24.2 1.2E+02 0.0025 27.1 4.0 59 15-78 267-329 (453)
344 cd06324 PBP1_ABC_sugar_binding 24.2 1.8E+02 0.004 23.0 5.0 32 110-147 58-89 (305)
345 COG4221 Short-chain alcohol de 24.1 1.2E+02 0.0027 24.7 4.0 20 36-55 20-39 (246)
346 PRK08217 fabG 3-ketoacyl-(acyl 24.0 1.4E+02 0.0031 22.5 4.2 15 36-50 19-33 (253)
347 COG0205 PfkA 6-phosphofructoki 24.0 3.4E+02 0.0073 23.3 6.7 58 17-76 66-124 (347)
348 PRK03515 ornithine carbamoyltr 24.0 3.9E+02 0.0084 22.6 7.1 55 64-129 65-119 (336)
349 cd02115 AAK Amino Acid Kinases 23.9 1.8E+02 0.0038 22.5 4.8 36 20-55 4-40 (248)
350 PRK06455 riboflavin synthase; 23.9 1.3E+02 0.0027 23.0 3.7 38 109-146 55-97 (155)
351 PRK00779 ornithine carbamoyltr 23.9 3.6E+02 0.0078 22.3 6.8 17 63-79 62-78 (304)
352 KOG4175 Tryptophan synthase al 23.8 1.4E+02 0.0029 24.3 4.0 52 94-145 154-212 (268)
353 PF00258 Flavodoxin_1: Flavodo 23.8 1E+02 0.0022 21.7 3.1 38 13-51 86-123 (143)
354 PRK09496 trkA potassium transp 23.7 1E+02 0.0023 26.1 3.7 90 30-121 216-308 (453)
355 KOG0725 Reductases with broad 23.5 1.2E+02 0.0026 24.6 3.8 32 15-53 8-39 (270)
356 PRK08338 2-oxoglutarate ferred 23.5 82 0.0018 23.6 2.7 10 109-118 63-72 (170)
357 PF03033 Glyco_transf_28: Glyc 23.3 1.6E+02 0.0035 20.2 4.1 41 31-76 11-51 (139)
358 cd06323 PBP1_ribose_binding Pe 23.3 2.8E+02 0.006 20.9 5.7 38 105-147 50-87 (268)
359 PRK05867 short chain dehydroge 23.2 3.4E+02 0.0074 20.7 7.4 31 15-53 10-40 (253)
360 cd08191 HHD 6-hydroxyhexanoate 23.2 2.2E+02 0.0048 24.1 5.6 13 109-121 78-90 (386)
361 PRK10537 voltage-gated potassi 23.2 4.9E+02 0.011 22.5 10.5 86 45-137 240-327 (393)
362 PF09587 PGA_cap: Bacterial ca 23.1 1.6E+02 0.0035 23.2 4.5 21 35-55 205-225 (250)
363 PRK06200 2,3-dihydroxy-2,3-dih 23.1 1.5E+02 0.0032 22.9 4.2 16 36-51 20-35 (263)
364 PRK15395 methyl-galactoside AB 23.1 4.1E+02 0.0089 21.5 8.5 36 107-147 78-113 (330)
365 PRK14106 murD UDP-N-acetylmura 23.1 2.6E+02 0.0056 23.8 6.0 12 108-119 66-77 (450)
366 PF12965 DUF3854: Domain of un 23.1 3E+02 0.0065 19.9 6.8 48 16-64 70-124 (130)
367 PRK08594 enoyl-(acyl carrier p 23.0 1.6E+02 0.0035 23.0 4.4 31 15-52 8-39 (257)
368 PRK10953 cysJ sulfite reductas 23.0 88 0.0019 28.6 3.2 35 13-50 60-94 (600)
369 PRK07533 enoyl-(acyl carrier p 22.9 1.7E+02 0.0036 22.7 4.5 17 36-52 26-42 (258)
370 TIGR02483 PFK_mixed phosphofru 22.9 2.5E+02 0.0055 23.6 5.7 56 18-76 66-123 (324)
371 PF00290 Trp_syntA: Tryptophan 22.9 3.1E+02 0.0066 22.4 6.1 51 94-145 146-203 (259)
372 PRK10307 putative glycosyl tra 22.9 1.6E+02 0.0034 24.5 4.5 35 15-49 1-35 (412)
373 PRK08690 enoyl-(acyl carrier p 22.8 1.4E+02 0.003 23.3 4.0 31 15-52 7-38 (261)
374 cd03825 GT1_wcfI_like This fam 22.8 1.9E+02 0.004 22.8 4.8 38 102-147 256-295 (365)
375 PF03102 NeuB: NeuB family; I 22.8 1.3E+02 0.0029 24.2 3.9 37 110-147 111-147 (241)
376 COG1763 MobB Molybdopterin-gua 22.8 2.1E+02 0.0045 21.7 4.8 33 14-50 2-34 (161)
377 PRK06603 enoyl-(acyl carrier p 22.8 1.7E+02 0.0037 22.8 4.5 17 36-52 24-40 (260)
378 COG4098 comFA Superfamily II D 22.8 5.3E+02 0.012 22.7 9.0 52 29-80 100-154 (441)
379 KOG4321 Predicted phosphate ac 22.7 54 0.0012 25.8 1.6 30 101-130 68-97 (279)
380 cd06302 PBP1_LsrB_Quorum_Sensi 22.7 2.2E+02 0.0048 22.4 5.2 36 107-147 53-88 (298)
381 PRK06079 enoyl-(acyl carrier p 22.6 1.6E+02 0.0035 22.7 4.3 31 15-52 8-39 (252)
382 COG0493 GltD NADPH-dependent g 22.6 4.3E+02 0.0092 23.4 7.3 50 15-85 124-174 (457)
383 cd00951 KDGDH 5-dehydro-4-deox 22.6 4.2E+02 0.0091 21.5 7.9 66 15-82 36-106 (289)
384 PF07287 DUF1446: Protein of u 22.6 2.3E+02 0.005 24.4 5.5 55 24-78 49-107 (362)
385 PRK05867 short chain dehydroge 22.6 1.5E+02 0.0033 22.7 4.2 31 45-76 9-39 (253)
386 PRK08057 cobalt-precorrin-6x r 22.5 84 0.0018 25.4 2.7 36 93-130 110-145 (248)
387 COG0075 Serine-pyruvate aminot 22.5 2.5E+02 0.0055 24.4 5.7 52 29-81 34-91 (383)
388 PRK08226 short chain dehydroge 22.4 1.5E+02 0.0033 22.7 4.1 31 15-53 7-37 (263)
389 smart00854 PGA_cap Bacterial c 22.4 1.7E+02 0.0037 22.8 4.5 20 36-55 195-214 (239)
390 PRK07890 short chain dehydroge 22.3 1.7E+02 0.0038 22.2 4.4 30 15-52 6-35 (258)
391 PRK08415 enoyl-(acyl carrier p 22.2 1.7E+02 0.0036 23.3 4.4 17 36-52 21-37 (274)
392 cd00408 DHDPS-like Dihydrodipi 22.2 4E+02 0.0088 21.1 8.2 68 15-83 33-105 (281)
393 PRK12823 benD 1,6-dihydroxycyc 22.1 1.7E+02 0.0036 22.5 4.3 31 15-53 9-39 (260)
394 PRK09004 FMN-binding protein M 22.0 2.5E+02 0.0054 20.4 5.0 9 67-75 110-118 (146)
395 PRK12562 ornithine carbamoyltr 22.0 4.5E+02 0.0098 22.2 7.1 14 65-78 66-79 (334)
396 PRK06015 keto-hydroxyglutarate 21.9 3.5E+02 0.0075 21.2 6.0 107 14-132 4-115 (201)
397 PRK06398 aldose dehydrogenase; 21.9 1.6E+02 0.0035 22.8 4.2 28 48-76 9-36 (258)
398 cd03784 GT1_Gtf_like This fami 21.9 2E+02 0.0043 23.7 5.0 34 16-53 2-35 (401)
399 cd03786 GT1_UDP-GlcNAc_2-Epime 21.8 4.2E+02 0.0092 21.2 12.7 35 102-147 269-303 (363)
400 smart00864 Tubulin Tubulin/Fts 21.8 93 0.002 23.7 2.7 31 101-131 73-108 (192)
401 PF09353 DUF1995: Domain of un 21.8 3.8E+02 0.0082 20.6 10.1 34 111-148 98-131 (209)
402 cd01536 PBP1_ABC_sugar_binding 21.8 2.6E+02 0.0057 20.8 5.3 36 107-147 52-87 (267)
403 PRK06194 hypothetical protein; 21.8 3.9E+02 0.0084 20.8 7.4 56 13-76 5-60 (287)
404 TIGR02685 pter_reduc_Leis pter 21.7 1.6E+02 0.0034 22.9 4.1 11 110-120 84-94 (267)
405 PF07442 Ponericin: Ponericin; 21.7 62 0.0013 17.6 1.2 25 33-66 4-28 (29)
406 COG2515 Acd 1-aminocyclopropan 21.7 1.4E+02 0.0031 25.3 4.0 34 109-145 179-212 (323)
407 PRK12747 short chain dehydroge 21.7 1.7E+02 0.0037 22.3 4.3 16 36-51 18-33 (252)
408 cd08189 Fe-ADH5 Iron-containin 21.6 4.9E+02 0.011 21.9 7.5 14 108-121 81-94 (374)
409 cd03814 GT1_like_2 This family 21.6 1.4E+02 0.0031 23.2 3.9 35 16-50 1-35 (364)
410 CHL00188 hisH imidazole glycer 21.6 1.3E+02 0.0029 23.4 3.6 10 109-119 38-47 (210)
411 COG0329 DapA Dihydrodipicolina 21.5 4.6E+02 0.01 21.5 8.3 69 15-83 40-112 (299)
412 PRK09291 short chain dehydroge 21.5 1.7E+02 0.0036 22.3 4.2 30 15-52 3-32 (257)
413 cd06315 PBP1_ABC_sugar_binding 21.5 3.1E+02 0.0068 21.2 5.8 34 16-51 2-35 (280)
414 PRK05872 short chain dehydroge 21.5 1.6E+02 0.0035 23.4 4.2 29 15-51 10-38 (296)
415 TIGR03371 cellulose_yhjQ cellu 21.4 2.5E+02 0.0053 21.5 5.1 33 14-49 1-33 (246)
416 cd01356 AcnX_swivel Putative A 21.4 1.7E+02 0.0036 21.4 3.8 34 110-143 42-75 (123)
417 PRK00942 acetylglutamate kinas 21.4 1.8E+02 0.004 23.4 4.5 41 14-55 24-66 (283)
418 PRK06483 dihydromonapterin red 21.4 1.7E+02 0.0037 22.0 4.2 16 36-51 16-31 (236)
419 PF14419 SPOUT_MTase_2: AF2226 21.3 1E+02 0.0022 23.9 2.7 49 27-80 102-151 (173)
420 PRK08993 2-deoxy-D-gluconate 3 21.3 1.7E+02 0.0037 22.5 4.2 16 35-50 23-38 (253)
421 PRK10494 hypothetical protein; 21.3 2.1E+02 0.0046 23.1 4.9 12 110-121 78-89 (259)
422 PF11834 DUF3354: Domain of un 21.3 2E+02 0.0044 18.7 3.9 24 112-139 19-42 (69)
423 PRK10355 xylF D-xylose transpo 21.2 3E+02 0.0066 22.4 5.9 38 13-52 24-61 (330)
424 PRK08210 aspartate kinase I; R 21.1 1.5E+02 0.0032 25.3 4.1 39 16-55 4-45 (403)
425 PRK07576 short chain dehydroge 21.1 1.7E+02 0.0038 22.7 4.3 30 15-52 10-39 (264)
426 PRK05782 bifunctional sirohydr 21.1 5.2E+02 0.011 22.0 8.9 64 14-82 6-75 (335)
427 PLN02730 enoyl-[acyl-carrier-p 21.0 1.5E+02 0.0032 24.5 3.9 31 35-66 24-54 (303)
428 cd06306 PBP1_TorT-like TorT-li 21.0 2.2E+02 0.0047 22.0 4.8 37 105-147 52-88 (268)
429 PF03486 HI0933_like: HI0933-l 21.0 70 0.0015 27.7 2.1 26 49-76 4-29 (409)
430 PRK08264 short chain dehydroge 20.9 3.6E+02 0.0079 20.1 9.3 29 47-76 8-37 (238)
431 PRK03620 5-dehydro-4-deoxygluc 20.9 4.7E+02 0.01 21.4 8.0 67 14-82 42-113 (303)
432 PRK08416 7-alpha-hydroxysteroi 20.9 1.7E+02 0.0037 22.6 4.1 29 15-51 9-37 (260)
433 COG0148 Eno Enolase [Carbohydr 20.8 1.7E+02 0.0038 25.7 4.4 37 101-137 318-354 (423)
434 cd03816 GT1_ALG1_like This fam 20.8 2E+02 0.0042 24.4 4.7 33 13-49 2-34 (415)
435 PRK07478 short chain dehydroge 20.8 1.9E+02 0.004 22.1 4.3 30 15-52 7-36 (254)
436 cd06321 PBP1_ABC_sugar_binding 20.7 2.8E+02 0.006 21.1 5.3 33 17-51 2-36 (271)
437 PRK14028 pyruvate ferredoxin o 20.7 2.1E+02 0.0045 23.5 4.8 36 33-77 17-52 (312)
438 PLN03050 pyridoxine (pyridoxam 20.7 1.8E+02 0.0039 23.4 4.3 30 15-49 61-90 (246)
439 PRK07023 short chain dehydroge 20.7 1.8E+02 0.004 22.0 4.2 15 36-50 15-29 (243)
440 PRK05693 short chain dehydroge 20.7 1.8E+02 0.0038 22.7 4.2 15 36-50 15-29 (274)
441 cd04253 AAK_UMPK-PyrH-Pf AAK_U 20.6 1.2E+02 0.0026 23.6 3.1 36 20-55 6-44 (221)
442 PF00890 FAD_binding_2: FAD bi 20.6 79 0.0017 26.5 2.3 28 49-78 3-30 (417)
443 cd04239 AAK_UMPK-like AAK_UMPK 20.6 1.2E+02 0.0027 23.5 3.3 35 20-55 6-48 (229)
444 TIGR01915 npdG NADPH-dependent 20.6 2.2E+02 0.0047 21.9 4.6 29 16-52 2-30 (219)
445 cd03789 GT1_LPS_heptosyltransf 20.6 4.2E+02 0.0092 20.7 10.1 103 14-146 121-223 (279)
446 PRK06523 short chain dehydroge 20.5 1.8E+02 0.004 22.2 4.2 28 48-76 12-39 (260)
447 PRK08265 short chain dehydroge 20.5 1.8E+02 0.0039 22.5 4.2 30 15-52 7-36 (261)
448 PRK08159 enoyl-(acyl carrier p 20.5 2E+02 0.0042 22.7 4.5 10 111-120 89-98 (272)
449 cd00578 L-fuc_L-ara-isomerases 20.4 5.6E+02 0.012 22.1 11.1 35 109-148 62-96 (452)
450 PRK07523 gluconate 5-dehydroge 20.4 1.8E+02 0.0039 22.2 4.2 30 15-52 11-40 (255)
451 PRK00170 azoreductase; Reviewe 20.4 3E+02 0.0066 20.4 5.3 33 16-49 4-38 (201)
452 PRK05993 short chain dehydroge 20.4 1.7E+02 0.0037 22.9 4.1 30 47-77 6-35 (277)
453 TIGR02822 adh_fam_2 zinc-bindi 20.3 1.7E+02 0.0036 23.9 4.1 31 46-78 167-197 (329)
454 PLN02564 6-phosphofructokinase 20.2 3.3E+02 0.0072 24.5 6.1 52 18-76 154-211 (484)
455 cd01540 PBP1_arabinose_binding 20.2 3.2E+02 0.007 21.0 5.6 39 104-147 48-86 (289)
456 cd08193 HVD 5-hydroxyvalerate 20.2 3E+02 0.0064 23.2 5.7 13 109-121 82-94 (376)
457 PLN02695 GDP-D-mannose-3',5'-e 20.1 2.2E+02 0.0047 23.8 4.8 33 10-50 17-49 (370)
458 PRK07792 fabG 3-ketoacyl-(acyl 20.1 1.8E+02 0.0039 23.4 4.2 54 15-76 13-67 (306)
459 PF02951 GSH-S_N: Prokaryotic 20.0 1.4E+02 0.0029 21.5 3.1 38 15-53 1-38 (119)
460 PRK12829 short chain dehydroge 20.0 2E+02 0.0043 21.9 4.3 27 15-49 12-38 (264)
461 cd01409 SIRT4 SIRT4: Eukaryoti 20.0 98 0.0021 25.0 2.6 43 101-148 195-239 (260)
462 KOG4435 Predicted lipid kinase 20.0 2E+02 0.0043 25.7 4.6 51 30-82 101-154 (535)
463 PRK12825 fabG 3-ketoacyl-(acyl 20.0 2.3E+02 0.005 21.1 4.6 30 14-51 6-35 (249)
464 PRK06555 pyrophosphate--fructo 20.0 4.1E+02 0.0088 23.3 6.5 58 18-76 73-147 (403)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=7.3e-46 Score=286.14 Aligned_cols=134 Identities=49% Similarity=0.900 Sum_probs=127.4
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCcee
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEV 94 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~ 94 (148)
++|||||||+.+++++|++.|++||++||++|+.||||||..|+|+++++||+++||+|+||+|..+..++..++..++.
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~ 80 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL 80 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence 48999999999999999999999999999999999999997799999999999999999999999877667777778888
Q ss_pred eecCCHHHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEecC
Q 032051 95 KPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLHV 148 (148)
Q Consensus 95 ~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n~ 148 (148)
+.+++|++||.+|++.||+||+||||+|||+|++++|+|.|+|+|+||++++|+
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~ 134 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNV 134 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECC
Confidence 899999999999999999999999999999999999999999999999999984
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=4e-38 Score=247.77 Aligned_cols=139 Identities=38% Similarity=0.625 Sum_probs=121.5
Q ss_pred hccCCcceEEEEeCCCCCCChH-HHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccC
Q 032051 9 KAMSRFKRVCVFCGSSTGKRNC-YRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEIT 87 (148)
Q Consensus 9 ~~~~~~~~V~V~ggs~~~~~~~-~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~ 87 (148)
.....+++|||||||+...++. |++.|++||++|+++|+.|++|||+ |+|+|+++||.++||.|+||+|......+..
T Consensus 9 ~~~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~-GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~ 87 (205)
T COG1611 9 LLFIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGP-GVMEAVARGALEAGGLVVGILPGLLHEQEPP 87 (205)
T ss_pred hcccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCch-hhhhHHHHHHHHcCCeEEEecCCCchhhccC
Confidence 3344578999999999766666 9999999999999999877777766 9999999999999999999999877655533
Q ss_pred CCCCceeeecCCHHHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCC--CCcEEEecC
Q 032051 88 GETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIH--DKPVNQLHV 148 (148)
Q Consensus 88 ~~~~~~~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~--~kPv~l~n~ 148 (148)
+....+++++++|++||..|+++|||||++|||+||++|++++|+|.|++.+ .+|.+++|.
T Consensus 88 ~~~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~ 150 (205)
T COG1611 88 NYEVIELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNG 150 (205)
T ss_pred ccccceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecc
Confidence 4445678899999999999999999999999999999999999999999988 888888763
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=1.4e-36 Score=230.64 Aligned_cols=122 Identities=30% Similarity=0.436 Sum_probs=106.2
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCce
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGE 93 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~ 93 (148)
|++|||||||+ .++.|++.|++||++||++|+.|+|||+. |+|+++++||+++||+|+||+|..+. ..+++.+
T Consensus 1 ~~~I~V~gss~--~~~~~~~~A~~lg~~La~~g~~lv~Gg~~-GlM~a~a~ga~~~gg~viGVlp~~l~----~~~~~~~ 73 (159)
T TIGR00725 1 MVQIGVIGSSN--KSEELYEIAYRLGKELAKKGHILINGGRT-GVMEAVSKGAREAGGLVVGILPDEDF----AGNPYLT 73 (159)
T ss_pred CeEEEEEeCCC--CChHHHHHHHHHHHHHHHCCCEEEcCCch-hHHHHHHHHHHHCCCeEEEECChhhc----cCCCCce
Confidence 57899999988 36789999999999999999999998755 99999999999999999999998753 2344445
Q ss_pred eeec-CCHHHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEecC
Q 032051 94 VKPV-ADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLHV 148 (148)
Q Consensus 94 ~~~~-~~~~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n~ 148 (148)
+.+. ..+++||++|+++||++|++|||+|||+|++++|+ ++|||+++|.
T Consensus 74 ~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------~~kpv~~l~~ 123 (159)
T TIGR00725 74 IKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYA------LGGPVVVLRG 123 (159)
T ss_pred EEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------cCCCEEEEEC
Confidence 4444 44488999999999999999999999999999998 5899999984
No 4
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=99.96 E-value=1.4e-29 Score=186.72 Aligned_cols=90 Identities=48% Similarity=0.744 Sum_probs=83.7
Q ss_pred HHHHHHHHhhcCCeEEEEeCCcccc-cccCCCCCceeeecCCHHHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhC
Q 032051 59 MGLVSHVVHRGGGHVLGIIPKTLMN-KEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG 137 (148)
Q Consensus 59 M~a~~~gA~~~GG~viGv~p~~~~~-~e~~~~~~~~~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg 137 (148)
|+|+++||+++||+|+||+|+.+.+ ++..++.+++++.+++|++||..|+++||++|++|||+|||+|++++|+|.|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999999888 666677778899999999999999999999999999999999999999999999
Q ss_pred CCCC-cEEEecC
Q 032051 138 IHDK-PVNQLHV 148 (148)
Q Consensus 138 ~~~k-Pv~l~n~ 148 (148)
.++| ||+++|.
T Consensus 81 ~~~~~Piil~~~ 92 (133)
T PF03641_consen 81 RHNKVPIILLNI 92 (133)
T ss_dssp SSTS-EEEEEEC
T ss_pred cccCCCEEEeCC
Confidence 8877 9999984
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=99.67 E-value=2e-15 Score=120.06 Aligned_cols=123 Identities=13% Similarity=0.180 Sum_probs=97.8
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcc---ccccc-----
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTL---MNKEI----- 86 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~---~~~e~----- 86 (148)
+.|+|.| +|.. .+...+.++++++.|+++|+.||+|++. |+|.+++++|+++||.+|+|+|..+ +|.+.
T Consensus 45 ~~iaIvG-sR~~-s~~~~~~a~~l~~~l~~~g~~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~ 121 (220)
T TIGR00732 45 RKVAIVG-TRRP-TKYGERWTRKLAEELAKNGVTIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAA 121 (220)
T ss_pred CeEEEEc-CCCC-CHHHHHHHHHHHHHHHhCCCEEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHH
Confidence 6899996 5643 4556789999999999999999999877 9999999999999999999999765 23220
Q ss_pred --CCCC---Cce-----eeecCCHHHHHHHHHHcCCEEEEecCc--hhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 87 --TGET---VGE-----VKPVADMHQRKAEMARNSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 87 --~~~~---~~~-----~~~~~~~~~R~~~~v~~sda~IvlpGG--~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
..+. +++ .....+|..||+++...||++|++..+ .||+.++-.++.+ +|||.++
T Consensus 122 ~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~~------gr~v~~~ 187 (220)
T TIGR00732 122 KIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYALEQ------GREVFAY 187 (220)
T ss_pred HHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHHh------CCcEEEE
Confidence 0001 111 112346789999999999999999986 6999999988854 7999886
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.44 E-value=2.5e-12 Score=101.69 Aligned_cols=124 Identities=19% Similarity=0.181 Sum_probs=79.2
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcc---ccccc---C
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTL---MNKEI---T 87 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~---~~~e~---~ 87 (148)
.+.|+|.| ||.. ++...+.++++++.|+++|+++|+|+.. |++.+++++|+++||++|+|+|..+ +|.+. .
T Consensus 44 ~~~iaIvG-sR~~-s~~g~~~a~~l~~~l~~~g~~vvSGlA~-GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~ 120 (212)
T PF02481_consen 44 QPSIAIVG-SRNP-SEYGLKFAKKLARELAKAGIVVVSGLAK-GIDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELA 120 (212)
T ss_dssp S-EEEEE---SS---HHHHHHHHHHHHHHHHHT-EEEE---T-THHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHH
T ss_pred CceEEEEc-CCCC-CHHHHHHHHHHHHHHhhCCEEEEcCCCC-CHHHHHHHHHHHccCCEEEEECCCcccccchhhHHHH
Confidence 56899996 5654 4667899999999999999999999877 9999999999999999999999766 34321 0
Q ss_pred -----CCC-------CceeeecCCHHHHHHHHHHcCCEEEEec--CchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 88 -----GET-------VGEVKPVADMHQRKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 88 -----~~~-------~~~~~~~~~~~~R~~~~v~~sda~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
.+. ...-.....|.+||+++...||++|++. =..||+.-+-.++.+ +|||.++
T Consensus 121 ~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~~------gr~v~~v 187 (212)
T PF02481_consen 121 ERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALEQ------GRPVFAV 187 (212)
T ss_dssp HHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHHH------T--EEE-
T ss_pred HHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHHc------CCeEEEE
Confidence 000 0011233567899999999999999996 456999988888865 7999875
No 7
>PRK10736 hypothetical protein; Provisional
Probab=99.28 E-value=1.2e-10 Score=99.23 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=94.4
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcc---ccccc-----
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTL---MNKEI----- 86 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~---~~~e~----- 86 (148)
+.|+|+| ||.. .+.-.+.++++++.|+++|+.||+|+.. |++.+++++|+++||++|+|++..+ +|.+.
T Consensus 108 ~~iaiVG-sR~~-s~yg~~~~~~l~~~la~~g~~IVSGlA~-GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~ 184 (374)
T PRK10736 108 PQLAVVG-SRAH-SWYGERWGRLFCEELAKNGLTITSGLAR-GIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLAE 184 (374)
T ss_pred CeEEEEC-CCCC-CHHHHHHHHHHHHHHHHCCCEEECcchh-hHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHHH
Confidence 6799996 6654 4556788999999999999999999877 9999999999999999999998655 44321
Q ss_pred ---CCCC--Cce-----eeecCCHHHHHHHHHHcCCEEEEec--CchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 87 ---TGET--VGE-----VKPVADMHQRKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 87 ---~~~~--~~~-----~~~~~~~~~R~~~~v~~sda~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
..+. +++ -....+|..||+++...|+++||+- =..|||.-.-.++. .+|+|.++
T Consensus 185 ~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kSGsliTA~~Al~------~gR~Vfav 250 (374)
T PRK10736 185 SIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRSGSLVTARCALE------QGRDVFAL 250 (374)
T ss_pred HHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHHH------hCCeEEEE
Confidence 0000 011 1223588999999999999999995 34588877776665 38888876
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=99.14 E-value=8.8e-10 Score=93.13 Aligned_cols=123 Identities=17% Similarity=0.202 Sum_probs=93.9
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcc---ccccc-----
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTL---MNKEI----- 86 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~---~~~e~----- 86 (148)
+.++|+| ||.. +..-.+.+++|++.|+++|+++|+|+.. |++.+++++|++.+|++|+|+...+ +|++.
T Consensus 112 ~~vaIVG-sR~~-S~~g~~~~~~~a~~L~~~g~~IvSGlA~-GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~ 188 (350)
T COG0758 112 PSVAIVG-SRKP-SKYGLDYTRDLAEYLAQNGITIVSGLAR-GIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAE 188 (350)
T ss_pred CceEEEe-CCCC-CHhHHHHHHHHHHHHHhCCeEEEecCcc-eecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHH
Confidence 6899996 6654 3456899999999999999999999977 9999999999999999999988655 44431
Q ss_pred --CCC------CCc-eeeecCCHHHHHHHHHHcCCEEEEecCch--hhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 87 --TGE------TVG-EVKPVADMHQRKAEMARNSDCFIALPGGY--GTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 87 --~~~------~~~-~~~~~~~~~~R~~~~v~~sda~IvlpGG~--GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
..+ ... .-+...+|..||+++...||+++|+-.+. |+|.=.-.++.+ +|.|..+
T Consensus 189 ~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kSGSLiTA~~Aleq------gR~Vfav 253 (350)
T COG0758 189 KIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKSGSLITAKYALEQ------GRDVFAV 253 (350)
T ss_pred HHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCcccccHHHHHHHHHc------CCeeEEc
Confidence 011 111 12334588999999999999999997554 888766666643 5666543
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=97.78 E-value=0.00037 Score=52.29 Aligned_cols=92 Identities=22% Similarity=0.243 Sum_probs=52.4
Q ss_pred EEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccc-cCCCCCc-eeeecCCHHHHHHHHHHcCCEEEEec-Cch--hh
Q 032051 49 LVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKE-ITGETVG-EVKPVADMHQRKAEMARNSDCFIALP-GGY--GT 123 (148)
Q Consensus 49 lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e-~~~~~~~-~~~~~~~~~~R~~~~v~~sda~Ivlp-GG~--GT 123 (148)
||+|| ..|+.+|+-+.|+++|-..=|-.|......+ ..+..|. ......+...|.++.++.||+-++|- |-. ||
T Consensus 1 IiSGG-QTGvDRAALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt 79 (145)
T PF12694_consen 1 IISGG-QTGVDRAALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT 79 (145)
T ss_dssp EE-----TTHHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH
T ss_pred CccCc-cccHHHHHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH
Confidence 57886 7799999999999999988899997664322 1122332 23345788999999999999977775 332 55
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEec
Q 032051 124 LEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 124 L~El~~~~~~~~lg~~~kPv~l~n 147 (148)
. +...++. .|+||+.+++
T Consensus 80 ~--lT~~~a~----~~~KP~l~i~ 97 (145)
T PF12694_consen 80 A--LTVEFAR----KHGKPCLHID 97 (145)
T ss_dssp H--HHHHHHH----HTT--EEEET
T ss_pred H--HHHHHHH----HhCCCEEEEe
Confidence 3 3322222 4799998875
No 10
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=96.62 E-value=0.18 Score=38.95 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHH---HHHhCCCe-EEEcCCCCChHHHHHHHHhhcC-----CeEEEEeCCcccccccCCC---------
Q 032051 28 RNCYRDAALDLGQ---ELVSKKLD-LVYGGGSVGLMGLVSHVVHRGG-----GHVLGIIPKTLMNKEITGE--------- 89 (148)
Q Consensus 28 ~~~~~~~A~~lG~---~lA~~g~~-lv~GGG~~GlM~a~~~gA~~~G-----G~viGv~p~~~~~~e~~~~--------- 89 (148)
+|.+...-..|-+ .+-++|++ +++||.. |+.--++.-+++.- =+.+-++|-...+..+...
T Consensus 21 ~~~~~~ik~~L~~~i~~lie~G~~~fi~Ggal-G~D~waae~vl~LK~~yp~ikL~~v~Pf~~q~~~W~~~~q~~y~~il 99 (177)
T PF06908_consen 21 DPKIQVIKKALKKQIIELIEEGVRWFITGGAL-GVDLWAAEVVLELKKEYPEIKLALVLPFENQGNNWNEANQERYQSIL 99 (177)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTT--EEEE---T-THHHHHHHHHHTTTTT-TT-EEEEEESSB-TTTTS-HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHCCCCEEEECCcc-cHHHHHHHHHHHHHhhhhheEEEEEEcccchhhcCCHHHHHHHHHHH
Confidence 4555444444444 33457888 5777655 99999999999853 3666777744332221100
Q ss_pred -CCceeeec--------CCHHHHHHHHHHcCCEEEEe-----cCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 90 -TVGEVKPV--------ADMHQRKAEMARNSDCFIAL-----PGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 90 -~~~~~~~~--------~~~~~R~~~~v~~sda~Ivl-----pGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
....+..+ .-|..||+.|+++||.+|++ +||....-+-...... .++.||.+++
T Consensus 100 ~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~~~----~~~y~i~~I~ 167 (177)
T PF06908_consen 100 EQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKYQE----QKGYPIDLID 167 (177)
T ss_dssp HH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHHHH----HH---EEEE-
T ss_pred HhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHHhh----ccCCeEEEec
Confidence 01112222 23469999999999999998 3444443333333321 2356776653
No 11
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=96.52 E-value=0.0071 Score=42.69 Aligned_cols=44 Identities=34% Similarity=0.321 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHcCCEEEEecCc----hhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 98 ADMHQRKAEMARNSDCFIALPGG----YGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 98 ~~~~~R~~~~v~~sda~IvlpGG----~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
....+|....++.||++|+.-.+ .||.-|+..++.+ +|||+++.
T Consensus 49 ~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~al------gkpv~~~~ 96 (113)
T PF05014_consen 49 REIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYAL------GKPVILLT 96 (113)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHHT------TSEEEEEE
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHC------CCEEEEEE
Confidence 34578889999999999988665 8999999999864 89999874
No 12
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=95.32 E-value=0.25 Score=32.67 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=46.2
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhC-CCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCc
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSK-KLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT 80 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~-g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~ 80 (148)
+|. |+|++.-.| +...-..|-+.+++. ...|++||.+.|....+.+=|.+.|-.++-+.|++
T Consensus 5 rVl-i~GgR~~~D--~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~adW 67 (71)
T PF10686_consen 5 RVL-ITGGRDWTD--HELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPADW 67 (71)
T ss_pred EEE-EEECCcccc--HHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcCh
Confidence 444 456676543 444556677777775 66789999857999999999999998888886664
No 13
>PRK10565 putative carbohydrate kinase; Provisional
Probab=93.97 E-value=0.39 Score=42.72 Aligned_cols=95 Identities=19% Similarity=0.133 Sum_probs=52.7
Q ss_pred CCCeEEEcCCCCChHHH---HHHHHhhcC-CeEEEEeCCcccccccCCCCCceeeecCCHHHHHHHHHHcCCEEEEecCc
Q 032051 45 KKLDLVYGGGSVGLMGL---VSHVVHRGG-GHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGG 120 (148)
Q Consensus 45 ~g~~lv~GGG~~GlM~a---~~~gA~~~G-G~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~~v~~sda~IvlpGG 120 (148)
+|+.+|.||.. +.++| ++++|+..| |.|.-+.|....+ .......+++..+...+.-.-++..+|++++=||
T Consensus 254 ~G~vliigGs~-~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~--~~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG- 329 (508)
T PRK10565 254 HGRLLIIGGDH-GTAGAIRMAGEAALRSGAGLVRVLTRSENIA--PLLTARPELMVHELTPDSLEESLEWADVVVIGPG- 329 (508)
T ss_pred CCeEEEEECCC-CCccHHHHHHHHHHHhCCCeEEEEeChhhHH--HHhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-
Confidence 58899999855 56665 577777776 6666666654211 1122333443322111212233477898776665
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcEEE
Q 032051 121 YGTLEELLEVITWAQLGIHDKPVNQ 145 (148)
Q Consensus 121 ~GTL~El~~~~~~~~lg~~~kPv~l 145 (148)
.|+-++...++.. +...++|+|+
T Consensus 330 lg~~~~~~~~~~~--~~~~~~P~VL 352 (508)
T PRK10565 330 LGQQEWGKKALQK--VENFRKPMLW 352 (508)
T ss_pred CCCCHHHHHHHHH--HHhcCCCEEE
Confidence 6775555444422 2345789875
No 14
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=92.84 E-value=0.66 Score=39.52 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 98 ADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 98 ~~~~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
..|.......+..||.+|.=+| ..|+.|++.. ++|.|++.
T Consensus 240 ~~f~~dm~~~~~~ADLvIsRaG-a~Ti~E~~a~---------g~P~IliP 279 (357)
T COG0707 240 LPFIDDMAALLAAADLVISRAG-ALTIAELLAL---------GVPAILVP 279 (357)
T ss_pred eeHHhhHHHHHHhccEEEeCCc-ccHHHHHHHh---------CCCEEEeC
Confidence 3444445667788998877655 5799999733 79999874
No 15
>PRK13660 hypothetical protein; Provisional
Probab=91.49 E-value=5.5 Score=31.00 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=59.7
Q ss_pred HHHHHHHHhCCCe-EEEcCCCCChHHHHHHHHhhc-----CCeEEEEeCCcccccccCC----------CCCceeee---
Q 032051 36 LDLGQELVSKKLD-LVYGGGSVGLMGLVSHVVHRG-----GGHVLGIIPKTLMNKEITG----------ETVGEVKP--- 96 (148)
Q Consensus 36 ~~lG~~lA~~g~~-lv~GGG~~GlM~a~~~gA~~~-----GG~viGv~p~~~~~~e~~~----------~~~~~~~~--- 96 (148)
++|-+.+ +.|+. +++||. -|+.--++.-+++. .=+++-++|-.-....+.. ...+.+..
T Consensus 33 ~~l~~~~-e~G~~wfi~gga-lG~d~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~ 110 (182)
T PRK13660 33 RKLIALL-EEGLEWVIISGQ-LGVELWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQADFVKSISK 110 (182)
T ss_pred HHHHHHH-HCCCCEEEECCc-chHHHHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEecC
Confidence 3444444 46777 577764 59999999999885 2356677774322211110 01111111
Q ss_pred -----cCCHHHHHHHHHHcCCEEEEe-----cCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 97 -----VADMHQRKAEMARNSDCFIAL-----PGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 97 -----~~~~~~R~~~~v~~sda~Ivl-----pGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
+.-|..|++.|+++||.+|++ +||..= -+-.|- .+-..++.||.+++
T Consensus 111 ~~y~~p~q~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y--~~~~A~--k~~~~~~y~i~~I~ 167 (182)
T PRK13660 111 RPYESPAQFRQYNQFMLEHTDGALLVYDEENEGSPKY--FYEAAK--KKQEKEDYPLDLIT 167 (182)
T ss_pred CCCCChHHHHHHHHHHHHccCeEEEEEcCCCCCChHH--HHHHHH--HhhhccCceEEEeC
Confidence 112689999999999999997 344432 222111 11113578888764
No 16
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=91.20 E-value=3.2 Score=33.67 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
......++..||.+|. .|| .|+.|+.. .++|++++-
T Consensus 232 ~~~m~~lm~~aDl~Is-~~G-~T~~E~~a---------~g~P~i~i~ 267 (279)
T TIGR03590 232 VENMAELMNEADLAIG-AAG-STSWERCC---------LGLPSLAIC 267 (279)
T ss_pred HHHHHHHHHHCCEEEE-CCc-hHHHHHHH---------cCCCEEEEE
Confidence 3445566789999999 566 89888753 389998873
No 17
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=90.74 E-value=2.6 Score=35.28 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=23.0
Q ss_pred HHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 106 ~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
.++..||++| ..||.||+.|... +++|++++
T Consensus 287 ~ll~~~~~~I-~hgG~~t~~Eal~---------~G~P~v~~ 317 (392)
T TIGR01426 287 EILKKADAFI-THGGMNSTMEALF---------NGVPMVAV 317 (392)
T ss_pred HHHhhCCEEE-ECCCchHHHHHHH---------hCCCEEec
Confidence 3467888554 6888999888752 48999886
No 18
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=90.73 E-value=0.26 Score=36.40 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=21.7
Q ss_pred HHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 105 ~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
..+++.|| +|+--||.||+.|+.. .++|.|++
T Consensus 67 ~~~m~~aD-lvIs~aG~~Ti~E~l~---------~g~P~I~i 98 (167)
T PF04101_consen 67 AELMAAAD-LVISHAGAGTIAEALA---------LGKPAIVI 98 (167)
T ss_dssp HHHHHHHS-EEEECS-CHHHHHHHH---------CT--EEEE
T ss_pred HHHHHHcC-EEEeCCCccHHHHHHH---------cCCCeecc
Confidence 45678899 6667788999888863 48998876
No 19
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=90.32 E-value=8.3 Score=31.09 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=22.4
Q ss_pred HHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 105 ~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.-++..||++|. ++|..|+-|.+ . .++|++..+
T Consensus 245 ~~~l~~ad~~v~-~~g~~~l~Ea~---~------~g~Pvv~~~ 277 (348)
T TIGR01133 245 AAAYAAADLVIS-RAGASTVAELA---A------AGVPAILIP 277 (348)
T ss_pred HHHHHhCCEEEE-CCChhHHHHHH---H------cCCCEEEee
Confidence 346789999886 44555655554 2 489998764
No 20
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=89.63 E-value=6 Score=33.21 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=22.7
Q ss_pred HHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 106 ~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
.++..||++|. -+|..|+.|+.. .++|.+++
T Consensus 248 ~~~~~adlvIs-r~G~~t~~E~~~---------~g~P~I~i 278 (352)
T PRK12446 248 DILAITDFVIS-RAGSNAIFEFLT---------LQKPMLLI 278 (352)
T ss_pred HHHHhCCEEEE-CCChhHHHHHHH---------cCCCEEEE
Confidence 46789995554 556678888862 48999987
No 21
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=88.70 E-value=4 Score=32.78 Aligned_cols=84 Identities=25% Similarity=0.331 Sum_probs=44.6
Q ss_pred CCCeEEEcCCCCChHHHHHHHHhhcCC-eEEEEeCCcccccccCCCCCceeeecCCHHHHHHHHHHcCCEEEEecCchhh
Q 032051 45 KKLDLVYGGGSVGLMGLVSHVVHRGGG-HVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGT 123 (148)
Q Consensus 45 ~g~~lv~GGG~~GlM~a~~~gA~~~GG-~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~~v~~sda~IvlpGG~GT 123 (148)
.++.+||=||. +.- .+.+.+.+..+ .++-+-+... +.....+ ++..+.+ ..-.-++..||++|-- ||.+|
T Consensus 192 ~~~iLv~~gg~-~~~-~~~~~l~~~~~~~~~v~g~~~~---~~~~~ni-~~~~~~~--~~~~~~m~~ad~vIs~-~G~~t 262 (318)
T PF13528_consen 192 EPKILVYFGGG-GPG-DLIEALKALPDYQFIVFGPNAA---DPRPGNI-HVRPFST--PDFAELMAAADLVISK-GGYTT 262 (318)
T ss_pred CCEEEEEeCCC-cHH-HHHHHHHhCCCCeEEEEcCCcc---cccCCCE-EEeecCh--HHHHHHHHhCCEEEEC-CCHHH
Confidence 45666665544 555 55555555553 3443322221 1111111 1222111 2223346889988776 88999
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEe
Q 032051 124 LEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 124 L~El~~~~~~~~lg~~~kPv~l~ 146 (148)
+.|+.. .+||++++
T Consensus 263 ~~Ea~~---------~g~P~l~i 276 (318)
T PF13528_consen 263 ISEALA---------LGKPALVI 276 (318)
T ss_pred HHHHHH---------cCCCEEEE
Confidence 888852 38999876
No 22
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=87.69 E-value=11 Score=31.09 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=23.3
Q ss_pred HHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 104 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 104 ~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
...++..||.+|. ++|..|+ |++ + .++|+|+.
T Consensus 255 ~~~~~~~aDl~v~-~sG~~~l-Ea~-a--------~G~PvI~~ 286 (380)
T PRK00025 255 KREAMAAADAALA-ASGTVTL-ELA-L--------LKVPMVVG 286 (380)
T ss_pred HHHHHHhCCEEEE-CccHHHH-HHH-H--------hCCCEEEE
Confidence 3456789998887 6778887 763 2 28999865
No 23
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=86.83 E-value=7.9 Score=32.41 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=25.2
Q ss_pred HHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 103 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 103 R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
....++..||++|.-+| .+|+.|. ++ .++|+|+.+
T Consensus 275 ~~~~l~~aaDv~V~~~g-~~ti~EA---ma------~g~PvI~~~ 309 (382)
T PLN02605 275 NMEEWMGACDCIITKAG-PGTIAEA---LI------RGLPIILNG 309 (382)
T ss_pred cHHHHHHhCCEEEECCC-cchHHHH---HH------cCCCEEEec
Confidence 34567799999997555 4786665 43 389999875
No 24
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=84.42 E-value=20 Score=28.91 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 102 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 102 ~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
..-..++..||++|. ++|..|+.|. ++ .++|++..
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t~~Ea---m~------~G~Pvv~~ 278 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGASTVAEL---AA------LGLPAILI 278 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhHHHHH---HH------hCCCEEEe
Confidence 344566789999885 4455675444 43 38999874
No 25
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=84.22 E-value=6.3 Score=29.60 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=45.6
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEe
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~ 77 (148)
++++|.|.= .+. +.|-.-|+-+.+.|+..|+.++++|.. --.+.+++.|.+....+||+.
T Consensus 11 ~rprvlvak---~Gl-DgHd~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvS 70 (143)
T COG2185 11 ARPRVLVAK---LGL-DGHDRGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVS 70 (143)
T ss_pred CCceEEEec---cCc-cccccchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEE
Confidence 555665542 221 246577888899999999999999866 666788888899999999995
No 26
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=83.85 E-value=2.9 Score=32.37 Aligned_cols=42 Identities=24% Similarity=0.185 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCEEEEec--Cc----hhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 100 MHQRKAEMARNSDCFIALP--GG----YGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 100 ~~~R~~~~v~~sda~Ivlp--GG----~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
+.+-...++++||++|+.- =- .||.-|+-.+..+ +||++.+.
T Consensus 58 i~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Al------gKPv~~~~ 105 (172)
T COG3613 58 IYEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIAL------GKPVYAYR 105 (172)
T ss_pred HHHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHc------CCceEEEe
Confidence 3455666789999999884 33 7999999998875 89999875
No 27
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=83.59 E-value=13 Score=27.73 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCEEEEecCch-hhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 101 HQRKAEMARNSDCFIALPGGY-GTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~-GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.-|.+.+++.||.+|+.-|-- =-.+-.|.+=.... .+||+|++.
T Consensus 63 ~iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~A---lgKplI~lh 107 (141)
T PF11071_consen 63 AIRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAA---LGKPLITLH 107 (141)
T ss_pred HHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHH---cCCCeEEec
Confidence 568999999999999987752 22222333322212 479999875
No 28
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=83.58 E-value=9.6 Score=30.62 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEE
Q 032051 102 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQ 145 (148)
Q Consensus 102 ~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l 145 (148)
++-..++..+|++++ .+|.++-+.+.++..... .+++|+++
T Consensus 84 ~~~~~~~~~~davvi-g~Gl~~~~~~~~l~~~~~--~~~~pvVl 124 (272)
T TIGR00196 84 DEDEELLERYDVVVI-GPGLGQDPSFKKAVEEVL--ELDKPVVL 124 (272)
T ss_pred HHHHhhhccCCEEEE-cCCCCCCHHHHHHHHHHH--hcCCCEEE
Confidence 333444567777665 666888655443333222 35788764
No 29
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=83.31 E-value=8.7 Score=31.95 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=23.6
Q ss_pred HHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 106 ~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
.++..||++| -.||.||+.|... +++|++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal~---------~GvP~v~~ 330 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAALR---------AGVPQLVV 330 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHHH---------cCCCEEee
Confidence 4567799887 5677899888752 48999886
No 30
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=81.03 E-value=24 Score=29.84 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=21.3
Q ss_pred HHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 107 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 107 ~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
.+..||++|.-. |..|+ |++. .++|+|+.
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~a---------~G~P~Vv~ 292 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAAL---------IKTPMVVG 292 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHHH---------cCCCEEEE
Confidence 568899887766 66687 7652 38998875
No 31
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=80.54 E-value=3.9 Score=30.63 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=29.5
Q ss_pred HHhhccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 6 AAAKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 6 ~~~~~~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
.++.--.+-++|+|+|-|..+..+. +...+.|-++||.++=
T Consensus 8 ~i~~iL~~~K~IAvVG~S~~P~r~s-----y~V~kyL~~~GY~ViP 48 (140)
T COG1832 8 DIAEILKSAKTIAVVGASDKPDRPS-----YRVAKYLQQKGYRVIP 48 (140)
T ss_pred HHHHHHHhCceEEEEecCCCCCccH-----HHHHHHHHHCCCEEEe
Confidence 3444445668999999877665444 4577889999999863
No 32
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=80.42 E-value=3.8 Score=33.96 Aligned_cols=47 Identities=23% Similarity=0.438 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCCCe-EEEcCCCCChHHHHHHHHhhcCCeEEEEeCCc
Q 032051 33 DAALDLGQELVSKKLD-LVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT 80 (148)
Q Consensus 33 ~~A~~lG~~lA~~g~~-lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~ 80 (148)
..|.++++.++..++. |+.+||. |....++.|....+...+||+|..
T Consensus 45 g~a~~~a~~a~~~~~D~via~GGD-GTv~evingl~~~~~~~LgilP~G 92 (301)
T COG1597 45 GDAIEIAREAAVEGYDTVIAAGGD-GTVNEVANGLAGTDDPPLGILPGG 92 (301)
T ss_pred ccHHHHHHHHHhcCCCEEEEecCc-chHHHHHHHHhcCCCCceEEecCC
Confidence 3566777777777665 4666666 999999999999988889999954
No 33
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=79.57 E-value=18 Score=31.19 Aligned_cols=88 Identities=22% Similarity=0.208 Sum_probs=52.6
Q ss_pred HHhCCCeEEEcCCCCC----hHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCce-eeecCCHHHHHHHHHHcCCEEEE
Q 032051 42 LVSKKLDLVYGGGSVG----LMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGE-VKPVADMHQRKAEMARNSDCFIA 116 (148)
Q Consensus 42 lA~~g~~lv~GGG~~G----lM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~-~~~~~~~~~R~~~~v~~sda~Iv 116 (148)
.+.+....++=|+. + +-+.+.+.+.+.+.++|--... .. . ......+ .++.+..+ ...++..||++|
T Consensus 234 ~~d~~~vyvslGt~-~~~~~l~~~~~~a~~~l~~~vi~~~~~-~~--~-~~~~~p~n~~v~~~~p--~~~~l~~ad~vI- 305 (406)
T COG1819 234 PADRPIVYVSLGTV-GNAVELLAIVLEALADLDVRVIVSLGG-AR--D-TLVNVPDNVIVADYVP--QLELLPRADAVI- 305 (406)
T ss_pred cCCCCeEEEEcCCc-ccHHHHHHHHHHHHhcCCcEEEEeccc-cc--c-ccccCCCceEEecCCC--HHHHhhhcCEEE-
Confidence 33455555554434 5 5567777777788887766544 11 1 1122222 33333332 233788898865
Q ss_pred ecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 117 LPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 117 lpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
-.||.||..|... .++|++++
T Consensus 306 ~hGG~gtt~eaL~---------~gvP~vv~ 326 (406)
T COG1819 306 HHGGAGTTSEALY---------AGVPLVVI 326 (406)
T ss_pred ecCCcchHHHHHH---------cCCCEEEe
Confidence 6899999888752 48999876
No 34
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=79.35 E-value=24 Score=26.42 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCEEEEecCch-hhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 101 HQRKAEMARNSDCFIALPGGY-GTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~-GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.-|-+.+++.||.+|+.-|-- =-.+-.|.+=...- .+||+|++.
T Consensus 66 aiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aaA---lgKplI~lh 110 (144)
T TIGR03646 66 NIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAAA---LGKPLIILR 110 (144)
T ss_pred hHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHH---cCCCeEEec
Confidence 568889999999999987742 22333333322212 379999875
No 35
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=78.11 E-value=27 Score=28.91 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=54.0
Q ss_pred hCCCeEEEcCC--CCChHHHHHHHHhhcC-CeEEEEeCCcccccccCCCCCceeeec--CCHH-HHHHHHHHcCCEEEEe
Q 032051 44 SKKLDLVYGGG--SVGLMGLVSHVVHRGG-GHVLGIIPKTLMNKEITGETVGEVKPV--ADMH-QRKAEMARNSDCFIAL 117 (148)
Q Consensus 44 ~~g~~lv~GGG--~~GlM~a~~~gA~~~G-G~viGv~p~~~~~~e~~~~~~~~~~~~--~~~~-~R~~~~v~~sda~Ivl 117 (148)
++|..++.||+ +.|--..++.+|..+| |.|.-.+|..... . .....++++.. .+.. ..+..+.+..|++++
T Consensus 31 ~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~-~-~~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avvi- 107 (284)
T COG0063 31 DYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAAS-A-LKSYLPELMVIEVEGKKLLEERELVERADAVVI- 107 (284)
T ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhh-h-HhhcCcceeEeecccchhhHHhhhhccCCEEEE-
Confidence 46888888875 4577777788888887 5555555543210 1 11223333322 2222 223366778888665
Q ss_pred cCchhhHHHHHHHHHHHHhCCCCCcEEE
Q 032051 118 PGGYGTLEELLEVITWAQLGIHDKPVNQ 145 (148)
Q Consensus 118 pGG~GTL~El~~~~~~~~lg~~~kPv~l 145 (148)
+-|.|.-+|-.++....-.... +|+|+
T Consensus 108 GpGlG~~~~~~~~~~~~l~~~~-~p~Vi 134 (284)
T COG0063 108 GPGLGRDAEGQEALKELLSSDL-KPLVL 134 (284)
T ss_pred CCCCCCCHHHHHHHHHHHhccC-CCEEE
Confidence 4567777765555432221112 88876
No 36
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=76.33 E-value=3.9 Score=29.18 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=21.6
Q ss_pred EEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 114 FIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 114 ~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
.|+.-||=||++|+...+--........|+.++
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgii 84 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVL 84 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEe
Confidence 677899999999998877321111111577765
No 37
>PRK08105 flavodoxin; Provisional
Probab=76.07 E-value=4.1 Score=30.17 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=26.9
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
|++|.|+.+|..++. .+.|++|.+.|.+.|+.+.
T Consensus 1 m~~i~I~YgS~tGnt---e~~A~~l~~~l~~~g~~~~ 34 (149)
T PRK08105 1 MAKVGIFVGTVYGNA---LLVAEEAEAILTAQGHEVT 34 (149)
T ss_pred CCeEEEEEEcCchHH---HHHHHHHHHHHHhCCCceE
Confidence 457889988998854 3778999999988888753
No 38
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=75.76 E-value=7.7 Score=32.50 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=27.9
Q ss_pred HcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 109 ~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
+..|+||+.-| .-||+|...++.+.- .. .||||+-
T Consensus 77 ~~~dGiVVtHG-TDTmeeTA~~L~~~l-~~-~kPVVlT 111 (323)
T cd00411 77 DSYDGFVITHG-TDTMEETAYFLSLTL-EN-DKPVVLT 111 (323)
T ss_pred HhcCcEEEEcC-cccHHHHHHHHHHHh-cC-CCCEEEE
Confidence 45899998875 899999999998743 33 8999974
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=74.19 E-value=4.1 Score=34.43 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 100 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 100 ~~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
+.++-..++..||++|.-|||. |+.|.+ . .++|+++++
T Consensus 263 ~~~~~~~~~~~aDl~I~k~gg~-tl~EA~---a------~G~PvI~~~ 300 (391)
T PRK13608 263 YTKHMNEWMASSQLMITKPGGI-TISEGL---A------RCIPMIFLN 300 (391)
T ss_pred ccchHHHHHHhhhEEEeCCchH-HHHHHH---H------hCCCEEECC
Confidence 3344566789999999877764 755554 3 289999875
No 40
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=74.04 E-value=9.4 Score=32.20 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=29.6
Q ss_pred HHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 106 ~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
...+..|+||++-| .-||+|-..+++++--+ .||||+-
T Consensus 73 ~~~~~~dG~VVtHG-TDTme~TA~~Ls~~l~~--~kPVVlT 110 (336)
T TIGR00519 73 KEYDDYDGFVITHG-TDTMAYTAAALSFMLET--PKPVVFT 110 (336)
T ss_pred HHHhcCCeEEEccC-CchHHHHHHHHHHHcCC--CCCEEEE
Confidence 34456899999985 89999999998874323 8999973
No 41
>PRK09004 FMN-binding protein MioC; Provisional
Probab=73.86 E-value=4.4 Score=29.88 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=26.4
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
|++|.|+.+|..++. .+.|++|.+.+.+.|+.+.
T Consensus 1 M~~i~I~ygS~tGna---e~~A~~l~~~~~~~g~~~~ 34 (146)
T PRK09004 1 MADITLISGSTLGGA---EYVADHLAEKLEEAGFSTE 34 (146)
T ss_pred CCeEEEEEEcCchHH---HHHHHHHHHHHHHcCCceE
Confidence 457889988998854 3778999999888887653
No 42
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=72.93 E-value=17 Score=28.56 Aligned_cols=96 Identities=24% Similarity=0.231 Sum_probs=42.6
Q ss_pred CCCeEEEcCCC--CChHHHHHHHHhhcC-CeEEEEeCCcccccccCCCCCceeeecCC-H--HHHHHHHHHcCCEEEEec
Q 032051 45 KKLDLVYGGGS--VGLMGLVSHVVHRGG-GHVLGIIPKTLMNKEITGETVGEVKPVAD-M--HQRKAEMARNSDCFIALP 118 (148)
Q Consensus 45 ~g~~lv~GGG~--~GlM~a~~~gA~~~G-G~viGv~p~~~~~~e~~~~~~~~~~~~~~-~--~~R~~~~v~~sda~Ivlp 118 (148)
+|..++.||.. .|---.+..+|+..| |.+.-+.|....+ . .....++++...- . .+.-.......|++++ +
T Consensus 8 ~g~vl~i~Gs~~~~GA~~la~~~a~~~G~g~vt~~~~~~~~~-~-~~~~~pe~i~~~~~~~~~~~~~~~~~~~d~v~i-g 84 (254)
T cd01171 8 RGRVLVIGGSRGYTGAAYLAALAALRAGAGLVTVATPPEAAA-V-IKSYSPELMVHPLLETDIEELLELLERADAVVI-G 84 (254)
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHHHccCEEEEEECHhhHH-H-HHhcCceeeEecccccchHHHHhhhccCCEEEE-e
Confidence 56666666533 122222334455555 4566666654321 1 1111223222111 0 0111334566787665 5
Q ss_pred CchhhHHHHHHHHHHHHhCCCCCcEEE
Q 032051 119 GGYGTLEELLEVITWAQLGIHDKPVNQ 145 (148)
Q Consensus 119 GG~GTL~El~~~~~~~~lg~~~kPv~l 145 (148)
+|.|+-+.+..+..... .+++|+++
T Consensus 85 ~gl~~~~~~~~i~~~~~--~~~~pvVl 109 (254)
T cd01171 85 PGLGRDEEAAEILEKAL--AKDKPLVL 109 (254)
T ss_pred cCCCCCHHHHHHHHHHH--hcCCCEEE
Confidence 56877544444333222 34788764
No 43
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=72.67 E-value=5.1 Score=29.08 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCEEEEec--C---chhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 102 QRKAEMARNSDCFIALP--G---GYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 102 ~R~~~~v~~sda~Ivlp--G---G~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
+=.+.+++.||++|++. | ..|+.-|+..+.+ +++||.++
T Consensus 71 ~~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~------~~~~V~~~ 114 (116)
T PF09152_consen 71 DWDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEE------MGMPVFLY 114 (116)
T ss_dssp HHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHH------TT-EEEEH
T ss_pred HHhHHHHHhcceeEEecCCCccccccHHHHHHHHHH------cCCeEEEe
Confidence 44567789999999995 3 4599999998886 48999875
No 44
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=72.12 E-value=5.2 Score=28.40 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=19.3
Q ss_pred HHHcCCE--EEEecCchhhHHHHHHHH
Q 032051 107 MARNSDC--FIALPGGYGTLEELLEVI 131 (148)
Q Consensus 107 ~v~~sda--~IvlpGG~GTL~El~~~~ 131 (148)
..+..+. .|+.-||=||++|+...+
T Consensus 48 ~~~~~~~~~~ivv~GGDGTl~~vv~~l 74 (130)
T PF00781_consen 48 ILALDDYPDVIVVVGGDGTLNEVVNGL 74 (130)
T ss_dssp HHHHTTS-SEEEEEESHHHHHHHHHHH
T ss_pred HHhhccCccEEEEEcCccHHHHHHHHH
Confidence 3444544 788889999999998777
No 45
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=71.91 E-value=6.2 Score=30.97 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=28.3
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCC
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKK 46 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g 46 (148)
++++|++||||=++.+.-|...|+++.+.+...-
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~ 34 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDK 34 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCe
Confidence 4689999999999888888888998888775544
No 46
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=71.83 E-value=40 Score=27.44 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 102 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 102 ~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
+.-..++..||++|.- ||.+|+.|.. . +++|++++.
T Consensus 239 ~~~~~~l~~ad~vI~~-~G~~t~~Ea~---~------~g~P~l~ip 274 (321)
T TIGR00661 239 DNFKELIKNAELVITH-GGFSLISEAL---S------LGKPLIVIP 274 (321)
T ss_pred HHHHHHHHhCCEEEEC-CChHHHHHHH---H------cCCCEEEEc
Confidence 3445667889988775 5778977754 2 489998864
No 47
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=70.42 E-value=48 Score=27.91 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=22.9
Q ss_pred HHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 107 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 107 ~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
|+..||++|+-.-.+.-..|.. ..+|||.++
T Consensus 241 ~La~Adyii~TaDSinM~sEAa---------sTgkPv~~~ 271 (329)
T COG3660 241 MLAAADYIISTADSINMCSEAA---------STGKPVFIL 271 (329)
T ss_pred HHhhcceEEEecchhhhhHHHh---------ccCCCeEEE
Confidence 5678999999877777766654 247998875
No 48
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=68.28 E-value=12 Score=25.64 Aligned_cols=38 Identities=24% Similarity=0.189 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCEEEEecC---chhhHHHHHHHHHHHHhCCCCCcEE
Q 032051 101 HQRKAEMARNSDCFIALPG---GYGTLEELLEVITWAQLGIHDKPVN 144 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpG---G~GTL~El~~~~~~~~lg~~~kPv~ 144 (148)
..+...++..||+++.||| .-|..-|...|-. .++||+
T Consensus 50 m~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~------lGl~V~ 90 (92)
T PF14359_consen 50 MRICLAMLSDCDAIYMLPGWENSRGARLEHELAKK------LGLPVI 90 (92)
T ss_pred HHHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHH------CCCeEe
Confidence 4556667779999999998 5599999988774 367765
No 49
>PRK13337 putative lipid kinase; Reviewed
Probab=68.09 E-value=15 Score=29.94 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCC-eEEEcCCCCChHHHHHHHHhhcC-CeEEEEeCCc
Q 032051 36 LDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGG-GHVLGIIPKT 80 (148)
Q Consensus 36 ~~lG~~lA~~g~-~lv~GGG~~GlM~a~~~gA~~~G-G~viGv~p~~ 80 (148)
.++.+.++++++ .|+..||. |-...+.+|....+ ...+||+|..
T Consensus 47 ~~~a~~~~~~~~d~vvv~GGD-GTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 47 TLAAERAVERKFDLVIAAGGD-GTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHhcCCCEEEEEcCC-CHHHHHHHHHhhCCCCCcEEEECCc
Confidence 444444555543 24444456 99999999987664 3579999943
No 50
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=67.31 E-value=49 Score=26.95 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=31.7
Q ss_pred CHHHHHHHHHH-----cCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEE
Q 032051 99 DMHQRKAEMAR-----NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVN 144 (148)
Q Consensus 99 ~~~~R~~~~v~-----~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~ 144 (148)
+-.+|-+-+.+ ..|+++..-||.|+. ++..-+.|..+..++|+++
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~-rlL~~ld~~~~~~~pK~~i 95 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYGAN-RLLPYLDYDLIRANPKIFV 95 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH-HhhhhCCHHHHhhCCeEEE
Confidence 33455544433 479999999999985 4666678888776777765
No 51
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=66.78 E-value=11 Score=26.80 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=22.8
Q ss_pred eEEEcCCCCChHHHHHHHHhhcCC---eEEEEeCCc
Q 032051 48 DLVYGGGSVGLMGLVSHVVHRGGG---HVLGIIPKT 80 (148)
Q Consensus 48 ~lv~GGG~~GlM~a~~~gA~~~GG---~viGv~p~~ 80 (148)
.|+..||. |-...+..+..+... ..+|++|..
T Consensus 57 ~ivv~GGD-GTl~~vv~~l~~~~~~~~~~l~iiP~G 91 (130)
T PF00781_consen 57 VIVVVGGD-GTLNEVVNGLMGSDREDKPPLGIIPAG 91 (130)
T ss_dssp EEEEEESH-HHHHHHHHHHCTSTSSS--EEEEEE-S
T ss_pred EEEEEcCc-cHHHHHHHHHhhcCCCccceEEEecCC
Confidence 44445557 999999998888765 579999854
No 52
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=65.85 E-value=9 Score=31.56 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=30.4
Q ss_pred HHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEecC
Q 032051 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLHV 148 (148)
Q Consensus 105 ~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n~ 148 (148)
..++..||++++|+-..=+++-.-.+... ...++||.++|+
T Consensus 241 ~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a---~~~k~pi~IvNI 281 (305)
T KOG2683|consen 241 MEKVKECDGFLVLGSSLMVLSGFRFIRHA---HEKKKPIAIVNI 281 (305)
T ss_pred HHHHhccCceEEechhHHHHHHHHHHHHH---HhhcCcEEEEec
Confidence 34678899999998887777766554422 235899999996
No 53
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=65.28 E-value=76 Score=26.01 Aligned_cols=111 Identities=19% Similarity=0.275 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhCCC--eEEEcCCCCChHH--HHHHHHhh-cC--CeEEEEeCCccccc---c-cCC---CCCc-----e
Q 032051 33 DAALDLGQELVSKKL--DLVYGGGSVGLMG--LVSHVVHR-GG--GHVLGIIPKTLMNK---E-ITG---ETVG-----E 93 (148)
Q Consensus 33 ~~A~~lG~~lA~~g~--~lv~GGG~~GlM~--a~~~gA~~-~G--G~viGv~p~~~~~~---e-~~~---~~~~-----~ 93 (148)
+.|++ +-.+|+.|+ .+|++|=+ |+-+ +++-.+.+ .+ ..=+-|+|..-... . +.. +.+. |
T Consensus 60 ~Ra~~-AielA~~G~~ValVSsGDp-gVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSD 137 (249)
T COG1010 60 ERAKE-AIELAAEGRDVALVSSGDP-GVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSD 137 (249)
T ss_pred HHHHH-HHHHHhcCCeEEEEeCCCc-cHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHh
Confidence 44443 334555554 56888744 8744 33444444 44 34467777532100 0 111 1222 1
Q ss_pred eeecCCHHHHHHHHHHcCCEEEEe--cCchh---hHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 94 VKPVADMHQRKAEMARNSDCFIAL--PGGYG---TLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 94 ~~~~~~~~~R~~~~v~~sda~Ivl--pGG~G---TL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
+..+-..-+++......+|.+|+| |=+-+ -+.+.++++. +......||++++
T Consensus 138 lLtPwe~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~--~~r~~~tpVgivr 194 (249)
T COG1010 138 LLTPWEVIEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEILR--EHRSPDTPVGIVR 194 (249)
T ss_pred cCCcHHHHHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHHH--HhcCCCCcEEEEe
Confidence 222222235566667889999999 66666 4555555543 3334578998875
No 54
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=65.23 E-value=48 Score=26.11 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=42.6
Q ss_pred CCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCceeee--cCCHHHHHHHHH---------HcCCE
Q 032051 45 KKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKP--VADMHQRKAEMA---------RNSDC 113 (148)
Q Consensus 45 ~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~~~--~~~~~~R~~~~v---------~~sda 113 (148)
.|-.+|||| . |-.+.++-.+.++++..++-+ .+.+.|.+. ..+++ .+++-|..+..+ +.-|+
T Consensus 3 agrVivYGG-k-GALGSacv~~FkannywV~si--Dl~eNe~Ad---~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa 75 (236)
T KOG4022|consen 3 AGRVIVYGG-K-GALGSACVEFFKANNYWVLSI--DLSENEQAD---SSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA 75 (236)
T ss_pred CceEEEEcC-c-chHhHHHHHHHHhcCeEEEEE--eeccccccc---ceEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence 466789996 7 999999988998888776653 222222211 11222 234444433333 33799
Q ss_pred EEEecCch
Q 032051 114 FIALPGGY 121 (148)
Q Consensus 114 ~IvlpGG~ 121 (148)
++.+.||+
T Consensus 76 v~CVAGGW 83 (236)
T KOG4022|consen 76 VFCVAGGW 83 (236)
T ss_pred EEEeeccc
Confidence 99998876
No 55
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=64.76 E-value=30 Score=24.77 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHh----CCCe-EEEcCC---CCChHHHHHHHHhhcCCe
Q 032051 32 RDAALDLGQELVS----KKLD-LVYGGG---SVGLMGLVSHVVHRGGGH 72 (148)
Q Consensus 32 ~~~A~~lG~~lA~----~g~~-lv~GGG---~~GlM~a~~~gA~~~GG~ 72 (148)
.+.|+.+|+.||+ .|+. ++++-+ +.|-+.|+++|+.++|=.
T Consensus 70 ~~aa~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl~ 118 (119)
T PF00861_consen 70 VEAAYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGLE 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTCB
T ss_pred EehHHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCCC
Confidence 4788888888886 5764 566433 479999999999998843
No 56
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=64.72 E-value=17 Score=29.68 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 99 DMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 99 ~~~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
.+.+.-..++..||++|. ++|.+|+-|. +. .++|++..
T Consensus 241 g~~~~~~~~~~~~d~~i~-~~g~~~~~Ea---~~------~g~Pvv~~ 278 (357)
T PRK00726 241 PFIDDMAAAYAAADLVIC-RAGASTVAEL---AA------AGLPAILV 278 (357)
T ss_pred ehHhhHHHHHHhCCEEEE-CCCHHHHHHH---HH------hCCCEEEe
Confidence 333344567789999986 5566776555 33 38999986
No 57
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=64.64 E-value=12 Score=31.03 Aligned_cols=36 Identities=33% Similarity=0.489 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 102 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 102 ~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
+....++..||++|.-+|| .|+.|. +. .++|+|+++
T Consensus 265 ~~~~~l~~~aD~~v~~~gg-~t~~EA---~a------~g~PvI~~~ 300 (380)
T PRK13609 265 ENIDELFRVTSCMITKPGG-ITLSEA---AA------LGVPVILYK 300 (380)
T ss_pred hhHHHHHHhccEEEeCCCc-hHHHHH---HH------hCCCEEECC
Confidence 3445567899988865554 465554 43 289998864
No 58
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=64.48 E-value=71 Score=25.62 Aligned_cols=74 Identities=26% Similarity=0.336 Sum_probs=35.8
Q ss_pred EEEcCCCCChHHHH---HHHHhhcC-CeEEEEeCCcccccccCCCCCceeee-cCCH--HHHHHHHHHcCCEEEEecCch
Q 032051 49 LVYGGGSVGLMGLV---SHVVHRGG-GHVLGIIPKTLMNKEITGETVGEVKP-VADM--HQRKAEMARNSDCFIALPGGY 121 (148)
Q Consensus 49 lv~GGG~~GlM~a~---~~gA~~~G-G~viGv~p~~~~~~e~~~~~~~~~~~-~~~~--~~R~~~~v~~sda~IvlpGG~ 121 (148)
+|.||.. +..+|+ +++|+..| |.|.-+.|+...+. ......+++. .-.. ...-....+..|++++=|| .
T Consensus 2 lvigGS~-~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~--~~~~~Pe~m~~~~~~~~~~~~~~~~~~~~av~iGPG-l 77 (242)
T PF01256_consen 2 LVIGGSE-GYPGAAILAARAALRSGAGLVTLATPESIAPV--IASYSPEAMVSPLPSDEDVEILELLEKADAVVIGPG-L 77 (242)
T ss_dssp EEEE-BT-SSHHHHHHHHHHHHHTT-SEEEEEECGCCHHH--HHHHTTTSEEEETTHCCHHHHHHHHCH-SEEEE-TT--
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHH--HHhCCceeEEecccchhhhhhHhhhccCCEEEeecC-C
Confidence 4567644 666665 66777776 77777776544211 1112223222 1111 1122334577898888776 3
Q ss_pred hhHHH
Q 032051 122 GTLEE 126 (148)
Q Consensus 122 GTL~E 126 (148)
|+-++
T Consensus 78 g~~~~ 82 (242)
T PF01256_consen 78 GRDEE 82 (242)
T ss_dssp SSSHH
T ss_pred CCchh
Confidence 44444
No 59
>PRK11914 diacylglycerol kinase; Reviewed
Probab=64.34 E-value=77 Score=25.76 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=15.2
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD 48 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~ 48 (148)
.|+++.++.-...+... ..+...++-+.|.++|+.
T Consensus 7 ~~~~~~iI~NP~sG~g~-~~~~~~~~~~~l~~~g~~ 41 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGA-APHAAERAIARLHHRGVD 41 (306)
T ss_pred CCceEEEEECCCCCCCc-HHHHHHHHHHHHHHcCCe
Confidence 34555555433333221 223344444555555443
No 60
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=63.80 E-value=70 Score=26.40 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=26.5
Q ss_pred CCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEE
Q 032051 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVN 144 (148)
Q Consensus 111 sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~ 144 (148)
.||++..-||.|+. ++..-+.+..+..++|+++
T Consensus 67 i~aI~~~rGG~g~~-rlL~~lD~~~i~~~PK~fi 99 (308)
T cd07062 67 IKAIIPTIGGDDSN-ELLPYLDYELIKKNPKIFI 99 (308)
T ss_pred CCEEEECCcccCHh-hhhhhcCHHHHhhCCCEEE
Confidence 58999999999985 5777778888877777765
No 61
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.58 E-value=11 Score=31.38 Aligned_cols=88 Identities=23% Similarity=0.285 Sum_probs=52.5
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCc
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVG 92 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~ 92 (148)
++++|.++.-+ + .+...+.+.++.++|.++|+.+..---. . .. .+ ...
T Consensus 2 ~~kkv~lI~n~--~-~~~~~~~~~~i~~~L~~~g~~v~v~~~~----------~------------~~-~~----~~~-- 49 (305)
T PRK02645 2 QLKQVIIAYKA--G-SSQAKEAAERCAKQLEARGCKVLMGPSG----------P------------KD-NP----YPV-- 49 (305)
T ss_pred CcCEEEEEEeC--C-CHHHHHHHHHHHHHHHHCCCEEEEecCc----------h------------hh-cc----ccc--
Confidence 45678888533 2 3455577888888898899886543100 0 00 00 000
Q ss_pred eeeecCCHHHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEecC
Q 032051 93 EVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLHV 148 (148)
Q Consensus 93 ~~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n~ 148 (148)
. .....+..|.+|++ ||=||+.+....+. ..++|++-+|.
T Consensus 50 -------~---~~~~~~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~ 89 (305)
T PRK02645 50 -------F---LASASELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNV 89 (305)
T ss_pred -------h---hhccccCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEec
Confidence 0 01111346777766 89999998876653 35899998884
No 62
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=63.24 E-value=21 Score=31.09 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=27.3
Q ss_pred CCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 111 sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
.|+||+.-| .-||+|-..+++++- ...+||||+-
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l-~~~~kPVVlT 173 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMF-ETLPVPVVLV 173 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHh-hCCCCCEEEE
Confidence 789988885 899999999988744 2248999985
No 63
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=63.01 E-value=22 Score=31.07 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=28.2
Q ss_pred CCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 111 sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
.|+||+.-| .-||+|-..+++++- ..+||||+-
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l--~~~kPVVlT 185 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML--KTPVPIVFV 185 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc--CCCCCEEEe
Confidence 799999885 899999999998865 469999985
No 64
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=62.68 E-value=23 Score=29.84 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=29.0
Q ss_pred HHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 108 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 108 v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
.+..|+||+.-| .-||+|-..++++.- ...+||||+-
T Consensus 79 ~~~~dG~VVtHG-TDTmeeTA~~L~~~l-~~~~kPVVlT 115 (335)
T PRK09461 79 YDDYDGFVILHG-TDTMAYTASALSFML-ENLGKPVIVT 115 (335)
T ss_pred hccCCeEEEeec-cchHHHHHHHHHHHH-hCCCCCEEEe
Confidence 356899999885 899999999888643 2358999974
No 65
>PRK05723 flavodoxin; Provisional
Probab=62.66 E-value=10 Score=28.23 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=25.9
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
++|.|+.+|..++.+ +.|++|.+.|.+.|+.+.
T Consensus 1 ~~i~I~ygS~tG~ae---~~A~~la~~l~~~g~~~~ 33 (151)
T PRK05723 1 MKVAILSGSVYGTAE---EVARHAESLLKAAGFEAW 33 (151)
T ss_pred CeEEEEEEcCchHHH---HHHHHHHHHHHHCCCcee
Confidence 468888889988644 678899999888888763
No 66
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=61.63 E-value=12 Score=27.40 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=26.1
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
|++|+||.+|..++.+ ..|+.+.+.|...++.+
T Consensus 1 M~ki~Ivy~S~tGnTe---~vA~~i~~~l~~~~~~~ 33 (151)
T COG0716 1 MMKILIVYGSRTGNTE---KVAEIIAEELGADGFEV 33 (151)
T ss_pred CCeEEEEEEcCCCcHH---HHHHHHHHHhccCCceE
Confidence 5789999999988643 67888888888887766
No 67
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=61.61 E-value=15 Score=29.73 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=28.5
Q ss_pred hccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHh
Q 032051 9 KAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVS 44 (148)
Q Consensus 9 ~~~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~ 44 (148)
.+..+.++|+|||||=++.+--|...|+++-+.+.-
T Consensus 16 ~~~~~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~l 51 (243)
T PRK06973 16 PPLARPRRIGILGGTFDPIHDGHLALARRFADVLDL 51 (243)
T ss_pred CCCCCCceEEEECCCCCCCcHHHHHHHHHHHHHcCC
Confidence 344566789999999998887888888888887653
No 68
>PRK11914 diacylglycerol kinase; Reviewed
Probab=60.99 E-value=21 Score=29.07 Aligned_cols=44 Identities=34% Similarity=0.428 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCe-EEEcCCCCChHHHHHHHHhhcCCeEEEEeCC
Q 032051 34 AALDLGQELVSKKLD-LVYGGGSVGLMGLVSHVVHRGGGHVLGIIPK 79 (148)
Q Consensus 34 ~A~~lG~~lA~~g~~-lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~ 79 (148)
.+.++.+.+++.++. ||..||. |--..++.+.... ...+||+|.
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GGD-GTi~evv~~l~~~-~~~lgiiP~ 96 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGGD-GVISNALQVLAGT-DIPLGIIPA 96 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECCc-hHHHHHhHHhccC-CCcEEEEeC
Confidence 456667666666542 3444456 9999999988654 467999994
No 69
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=60.81 E-value=28 Score=25.53 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHh----CCCe-EEEcCC---CCChHHHHHHHHhhcCC
Q 032051 32 RDAALDLGQELVS----KKLD-LVYGGG---SVGLMGLVSHVVHRGGG 71 (148)
Q Consensus 32 ~~~A~~lG~~lA~----~g~~-lv~GGG---~~GlM~a~~~gA~~~GG 71 (148)
.+.|+.+|+.+|+ .|+. +|.|-+ +.|--.|+++||.|+|=
T Consensus 76 ~~aA~~vG~lia~ra~~kgi~~vVfdr~g~~yhgRV~Ala~~AreaGL 123 (125)
T COG0256 76 TEAAYLVGKLIAERALAKGIEEVVFDRGGYKYHGRVAALADGAREAGL 123 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCcchHHHHHHHHHHHcCc
Confidence 5788888888886 5766 555543 37899999999999874
No 70
>PRK06756 flavodoxin; Provisional
Probab=60.04 E-value=18 Score=26.12 Aligned_cols=33 Identities=9% Similarity=0.213 Sum_probs=24.2
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
++|.|+.+|..++. .+.|+.+++.|.+.|+.+.
T Consensus 2 mkv~IiY~S~tGnT---e~vA~~ia~~l~~~g~~v~ 34 (148)
T PRK06756 2 SKLVMIFASMSGNT---EEMADHIAGVIRETENEIE 34 (148)
T ss_pred ceEEEEEECCCchH---HHHHHHHHHHHhhcCCeEE
Confidence 46777777887753 3678888888888887753
No 71
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=58.80 E-value=17 Score=28.91 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHh----CCCe-EEEc---CCCCChHHHHHHHHhhcCC
Q 032051 32 RDAALDLGQELVS----KKLD-LVYG---GGSVGLMGLVSHVVHRGGG 71 (148)
Q Consensus 32 ~~~A~~lG~~lA~----~g~~-lv~G---GG~~GlM~a~~~gA~~~GG 71 (148)
.+.|+++|+.||+ .|+. |++= ==|.|-++|.++||.++|=
T Consensus 162 ieaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGRVkALAdaARe~GL 209 (211)
T PTZ00032 162 IKAAYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVGL 209 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhHHHHHHHHHHHcCC
Confidence 4678999999886 4654 3332 2247999999999999873
No 72
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=58.16 E-value=31 Score=28.08 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=28.2
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
+++|+|++|-.....+.=.+.++++.+.|.+.||.++
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~ 39 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAV 39 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEE
Confidence 4478877776655555556899999999999999854
No 73
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=58.01 E-value=1.2e+02 Score=25.89 Aligned_cols=31 Identities=42% Similarity=0.426 Sum_probs=21.4
Q ss_pred HHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 105 ~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
...+..||++|.-.| .-| .|+. + .++|+|++
T Consensus 291 ~~~l~~ADlvI~rSG-t~T-~E~a-~--------lg~P~Ili 321 (396)
T TIGR03492 291 AEILHWADLGIAMAG-TAT-EQAV-G--------LGKPVIQL 321 (396)
T ss_pred HHHHHhCCEEEECcC-HHH-HHHH-H--------hCCCEEEE
Confidence 456789999998866 344 4433 2 38999986
No 74
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=56.91 E-value=23 Score=29.30 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=27.1
Q ss_pred cCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe
Q 032051 11 MSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD 48 (148)
Q Consensus 11 ~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~ 48 (148)
|.++++|.|+. ++.+. =|...|+.|.++|.++|+.
T Consensus 1 ~~~~~rili~t-~~~G~--GH~~~a~al~~~l~~~g~~ 35 (380)
T PRK13609 1 MIKNPKVLILT-AHYGN--GHVQVAKTLEQTFRQKGIK 35 (380)
T ss_pred CCCCCeEEEEE-cCCCc--hHHHHHHHHHHHHHhcCCC
Confidence 45677899995 44453 4778999999999999885
No 75
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.62 E-value=17 Score=30.62 Aligned_cols=31 Identities=32% Similarity=0.515 Sum_probs=25.6
Q ss_pred hCCCeEEEcCCCCChHHHHHHHHhhcCCeEEE
Q 032051 44 SKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLG 75 (148)
Q Consensus 44 ~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viG 75 (148)
+.+..|+||||. |+=++.+....+.|.+++-
T Consensus 37 ~g~~vLITGgg~-GlGr~ialefa~rg~~~vl 67 (300)
T KOG1201|consen 37 SGEIVLITGGGS-GLGRLIALEFAKRGAKLVL 67 (300)
T ss_pred cCCEEEEeCCCc-hHHHHHHHHHHHhCCeEEE
Confidence 357888999988 9999999999998885543
No 76
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=55.30 E-value=36 Score=24.49 Aligned_cols=40 Identities=25% Similarity=0.470 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHh----CCCe-EEE-cCC--CCChHHHHHHHHhhcCC
Q 032051 32 RDAALDLGQELVS----KKLD-LVY-GGG--SVGLMGLVSHVVHRGGG 71 (148)
Q Consensus 32 ~~~A~~lG~~lA~----~g~~-lv~-GGG--~~GlM~a~~~gA~~~GG 71 (148)
.+.|+.+|+.||+ .|+. +++ -|| +.|-+.|+++||.++|-
T Consensus 65 ~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~Gl 112 (114)
T TIGR00060 65 KDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAGL 112 (114)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhCC
Confidence 6788999998886 4654 332 222 37999999999999873
No 77
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.10 E-value=98 Score=25.87 Aligned_cols=62 Identities=24% Similarity=0.354 Sum_probs=38.4
Q ss_pred cCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe----------------------------------------EE
Q 032051 11 MSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD----------------------------------------LV 50 (148)
Q Consensus 11 ~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~----------------------------------------lv 50 (148)
|.++++|+++.-.. .+...+.++++.++|.++|+. ++
T Consensus 2 ~~~~~~I~iv~~~~---~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~ 78 (306)
T PRK03372 2 MTASRRVLLVAHTG---RDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV 78 (306)
T ss_pred CCCccEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE
Confidence 56677899995322 244556777777777554433 33
Q ss_pred EcCCCCChHHHHHHHHhhcCCeEEEEe
Q 032051 51 YGGGSVGLMGLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 51 ~GGG~~GlM~a~~~gA~~~GG~viGv~ 77 (148)
.| |. |-|-.+++-+...+-+++||-
T Consensus 79 lG-GD-GT~L~aar~~~~~~~PilGIN 103 (306)
T PRK03372 79 LG-GD-GTILRAAELARAADVPVLGVN 103 (306)
T ss_pred Ec-CC-HHHHHHHHHhccCCCcEEEEe
Confidence 34 35 766666666666677788873
No 78
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=54.78 E-value=29 Score=28.81 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=26.0
Q ss_pred HcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 109 ~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
+..|++|++- |.-||+|....+++. +...+||||+-
T Consensus 71 ~~~~GvVVtH-GTDTme~tA~~Ls~~-l~~l~kPVVlT 106 (313)
T PF00710_consen 71 DDYDGVVVTH-GTDTMEETAFFLSLL-LDNLDKPVVLT 106 (313)
T ss_dssp TTCSEEEEE---STTHHHHHHHHHHH-EES-SSEEEEE
T ss_pred HhcCeEEEec-CchHHHHHHHHHHHH-hcCCCCCEEEe
Confidence 5589988886 579999999888763 33347999974
No 79
>PRK00861 putative lipid kinase; Reviewed
Probab=54.69 E-value=25 Score=28.53 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCC-eEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCc
Q 032051 36 LDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT 80 (148)
Q Consensus 36 ~~lG~~lA~~g~-~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~ 80 (148)
.++.+..++.++ .|+..||. |-...+.++.... +..+||+|..
T Consensus 47 ~~~a~~~~~~~~d~vv~~GGD-GTl~evv~~l~~~-~~~lgviP~G 90 (300)
T PRK00861 47 DQLAQEAIERGAELIIASGGD-GTLSAVAGALIGT-DIPLGIIPRG 90 (300)
T ss_pred HHHHHHHHhcCCCEEEEECCh-HHHHHHHHHHhcC-CCcEEEEcCC
Confidence 445555555543 34555556 9999999999765 4679999953
No 80
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=54.66 E-value=28 Score=28.28 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCC-eEEEcCCCCChHHHHHHHHhhcCC---eEEEEeCC
Q 032051 36 LDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGGG---HVLGIIPK 79 (148)
Q Consensus 36 ~~lG~~lA~~g~-~lv~GGG~~GlM~a~~~gA~~~GG---~viGv~p~ 79 (148)
.++.+.+++.++ .|+.-||. |-...+..|..+.+- ..+||+|.
T Consensus 42 ~~~a~~~~~~~~d~vv~~GGD-GTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 42 QRYVAEALALGVSTVIAGGGD-GTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHHHHHHcCCCEEEEEcCC-hHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 445555555543 23334446 999999999986542 35899994
No 81
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=54.60 E-value=55 Score=23.76 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEe
Q 032051 30 CYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 30 ~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~ 77 (148)
.|-.-+.-+...|...||.+++-|.. ---+.+++.|.+.+..++++.
T Consensus 14 ~Hd~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iS 60 (132)
T TIGR00640 14 GHDRGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVS 60 (132)
T ss_pred ccHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEc
Confidence 35455555666778899999998866 566788888999999999994
No 82
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=54.31 E-value=43 Score=27.18 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=21.5
Q ss_pred EEEecCchhhHHHHHHHHHHHHhC-CCCCcEEEe
Q 032051 114 FIALPGGYGTLEELLEVITWAQLG-IHDKPVNQL 146 (148)
Q Consensus 114 ~IvlpGG~GTL~El~~~~~~~~lg-~~~kPv~l~ 146 (148)
+|+.-||=||++|+...+. +.+ ....|+.++
T Consensus 55 ~vv~~GGDGTi~ev~ngl~--~~~~~~~~~lgii 86 (293)
T TIGR03702 55 TVIAGGGDGTLREVATALA--QIRDDAAPALGLL 86 (293)
T ss_pred EEEEEcCChHHHHHHHHHH--hhCCCCCCcEEEE
Confidence 6668899999999998873 212 123567765
No 83
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=53.44 E-value=71 Score=28.40 Aligned_cols=125 Identities=16% Similarity=0.072 Sum_probs=63.3
Q ss_pred HHhhccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhC--CCeEEEcCCCC-------ChHHHHHHHHhhcCCeEEEE
Q 032051 6 AAAKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSK--KLDLVYGGGSV-------GLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 6 ~~~~~~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~--g~~lv~GGG~~-------GlM~a~~~gA~~~GG~viGv 76 (148)
.+.+++...+++...|+-.....+ ......++-+.|.+. |..+++=|... -..+++.++..+.+-+++=-
T Consensus 256 ~~d~~rp~~p~v~~vGgi~~~~~~-~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~ 334 (507)
T PHA03392 256 VFDNNRPVPPSVQYLGGLHLHKKP-PQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWK 334 (507)
T ss_pred cccCCCCCCCCeeeecccccCCCC-CCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 345666677888888774431100 011223444556544 55666655421 24466667666666554432
Q ss_pred eCCcccccccCCCCCceeeecCCHHHHHHHHH-HcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 77 IPKTLMNKEITGETVGEVKPVADMHQRKAEMA-RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 77 ~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~~v-~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
......+. +.-..+.+.+-++. ..+|. ..+++| +--||.||..|.. .+++|++++
T Consensus 335 ~~~~~~~~----~~p~Nv~i~~w~Pq-~~lL~hp~v~~f-ItHGG~~s~~Eal---------~~GvP~v~i 390 (507)
T PHA03392 335 YDGEVEAI----NLPANVLTQKWFPQ-RAVLKHKNVKAF-VTQGGVQSTDEAI---------DALVPMVGL 390 (507)
T ss_pred ECCCcCcc----cCCCceEEecCCCH-HHHhcCCCCCEE-EecCCcccHHHHH---------HcCCCEEEC
Confidence 22111110 11123444454543 34443 235555 4567788887775 258999875
No 84
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.04 E-value=1e+02 Score=25.58 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=18.4
Q ss_pred CCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCC
Q 032051 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKK 46 (148)
Q Consensus 12 ~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g 46 (148)
..+++|+|+.-... +.-.+.++++.++|.++|
T Consensus 2 ~~~~~v~iv~~~~k---~~a~e~~~~i~~~L~~~g 33 (295)
T PRK01231 2 PSFRNIGLIGRLGS---SSVVETLRRLKDFLLDRG 33 (295)
T ss_pred CCCCEEEEEecCCC---HHHHHHHHHHHHHHHHCC
Confidence 34667888853332 344456666666665444
No 85
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=52.79 E-value=36 Score=27.97 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=30.8
Q ss_pred cCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCC
Q 032051 11 MSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGG 54 (148)
Q Consensus 11 ~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG 54 (148)
..+++.|++++|..... .+.+...++++.|-++++-+++.|+
T Consensus 91 ~G~I~Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC 132 (258)
T cd00587 91 DGTIPGVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGC 132 (258)
T ss_pred cCCCCeEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecch
Confidence 45778888888766542 3445568899999999998887764
No 86
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=52.16 E-value=23 Score=25.26 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=46.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCc-ccc--c----ccCCCCCcee-eecC---CHH------HHHHHHHH
Q 032051 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT-LMN--K----EITGETVGEV-KPVA---DMH------QRKAEMAR 109 (148)
Q Consensus 47 ~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~-~~~--~----e~~~~~~~~~-~~~~---~~~------~R~~~~v~ 109 (148)
..||+||+. |+=.++++...+.|+.++.++... ..+ . +..... .++ +... +.. ++-..-..
T Consensus 2 ~~lItGa~~-giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 2 TVLITGASS-GIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEETTTS-HHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEECCCC-HHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 357888765 888888888888877555443322 000 0 011111 221 1112 221 12222234
Q ss_pred cCCEEEEecCchh-------hHHHHHHHHHHH
Q 032051 110 NSDCFIALPGGYG-------TLEELLEVITWA 134 (148)
Q Consensus 110 ~sda~IvlpGG~G-------TL~El~~~~~~~ 134 (148)
.-|.+|...|... +.+++...+..+
T Consensus 80 ~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n 111 (167)
T PF00106_consen 80 PLDILINNAGIFSDGSLDDLSEEELERVFRVN 111 (167)
T ss_dssp SESEEEEECSCTTSBSGGGSHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhhhccccc
Confidence 6788999988887 677777776554
No 87
>PRK06703 flavodoxin; Provisional
Probab=52.09 E-value=22 Score=25.71 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=22.9
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
++|.|+.+|..++. .+.|+.+++.|...|+.+
T Consensus 2 mkv~IiY~S~tGnT---~~iA~~ia~~l~~~g~~v 33 (151)
T PRK06703 2 AKILIAYASMSGNT---EDIADLIKVSLDAFDHEV 33 (151)
T ss_pred CeEEEEEECCCchH---HHHHHHHHHHHHhcCCce
Confidence 45666667777643 367888888887777765
No 88
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=51.94 E-value=21 Score=27.14 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=19.7
Q ss_pred cceEEEEeCCCCCCChHHHHHHHH
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALD 37 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~ 37 (148)
|++|++||||=++.+--|...|++
T Consensus 1 m~~i~ifGGSFDP~H~GHl~ia~~ 24 (174)
T PRK08887 1 MKKIAVFGSAFNPPSLGHKSVIES 24 (174)
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHH
Confidence 357999999998887778777776
No 89
>PRK09271 flavodoxin; Provisional
Probab=51.85 E-value=24 Score=26.14 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=23.2
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
+|.|+.+|..++. .+.|+.+.+.|.+.|+.+
T Consensus 2 kv~IvY~S~tGnT---e~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 2 RILLAYASLSGNT---REVAREIEERCEEAGHEV 32 (160)
T ss_pred eEEEEEEcCCchH---HHHHHHHHHHHHhCCCee
Confidence 5666667887753 477888999888888875
No 90
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.48 E-value=1.1e+02 Score=25.28 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=39.5
Q ss_pred CCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe------------------------------------EEEcCCC
Q 032051 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD------------------------------------LVYGGGS 55 (148)
Q Consensus 12 ~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~------------------------------------lv~GGG~ 55 (148)
+.+++|+|+.-.. ++...+.+.++.++|.++|+. ++.| |.
T Consensus 3 ~~~~~i~ii~~~~---~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lG-GD 78 (296)
T PRK04539 3 SPFHNIGIVTRPN---TPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLG-GD 78 (296)
T ss_pred CCCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEEC-Cc
Confidence 3467799995322 355667788888887655533 3444 35
Q ss_pred CChHHHHHHHHhhcCCeEEEEeC
Q 032051 56 VGLMGLVSHVVHRGGGHVLGIIP 78 (148)
Q Consensus 56 ~GlM~a~~~gA~~~GG~viGv~p 78 (148)
|-|-.+++-+...+-+++||-.
T Consensus 79 -GT~L~aa~~~~~~~~PilGIN~ 100 (296)
T PRK04539 79 -GTFLSVAREIAPRAVPIIGINQ 100 (296)
T ss_pred -HHHHHHHHHhcccCCCEEEEec
Confidence 7776666666666678888843
No 91
>PRK13054 lipid kinase; Reviewed
Probab=51.43 E-value=35 Score=27.79 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCC-eEEEcCCCCChHHHHHHHHhhcC---CeEEEEeCCc
Q 032051 36 LDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGG---GHVLGIIPKT 80 (148)
Q Consensus 36 ~~lG~~lA~~g~-~lv~GGG~~GlM~a~~~gA~~~G---G~viGv~p~~ 80 (148)
.++.+.+++.++ .|+..||. |-...++.|..+.. ...+||+|..
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGD-GTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGD-GTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCc-cHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 344444444444 34445556 98888889887642 2479999943
No 92
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=51.24 E-value=1.2e+02 Score=23.98 Aligned_cols=88 Identities=22% Similarity=0.253 Sum_probs=53.3
Q ss_pred HHHHHHHh-CCCeEEEcCCCCChHHHHHHHHhh-cCCeEEEEeCCcccccccCCCCCceeeecCCHHHHHHHHHHcCCEE
Q 032051 37 DLGQELVS-KKLDLVYGGGSVGLMGLVSHVVHR-GGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCF 114 (148)
Q Consensus 37 ~lG~~lA~-~g~~lv~GGG~~GlM~a~~~gA~~-~GG~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~~v~~sda~ 114 (148)
+.-+.|++ .|..+|+|-|+.|+++-.----+. -|-++.-|-|..-.+ -.. -|+..-|.+
T Consensus 30 ~a~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea~h-----gdl--------------g~i~~~Dvv 90 (202)
T COG0794 30 RAVELILECKGKVFVTGVGKSGLIGKKFAARLASTGTPAFFVGPAEALH-----GDL--------------GMITPGDVV 90 (202)
T ss_pred HHHHHHHhcCCcEEEEcCChhHHHHHHHHHHHHccCCceEEecCchhcc-----CCc--------------cCCCCCCEE
Confidence 33444555 799999999999998766544443 455666665543211 111 146778988
Q ss_pred EEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 115 IALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 115 IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
|++.|+ |--+|+..+....+ ..+-|++.+
T Consensus 91 iaiS~S-GeT~el~~~~~~aK--~~g~~liai 119 (202)
T COG0794 91 IAISGS-GETKELLNLAPKAK--RLGAKLIAI 119 (202)
T ss_pred EEEeCC-CcHHHHHHHHHHHH--HcCCcEEEE
Confidence 888764 55577776665433 334555543
No 93
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=50.86 E-value=46 Score=28.45 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=26.3
Q ss_pred CEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 112 DCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 112 da~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
|.+|+.- |.-||+|-...++++--. .||||+.
T Consensus 102 dGvVItH-GTDTmeeTA~~L~l~l~~--~kPVVlT 133 (351)
T COG0252 102 DGVVITH-GTDTMEETAFFLSLTLNT--PKPVVLT 133 (351)
T ss_pred CeEEEeC-CCchHHHHHHHHHHHhcC--CCCEEEe
Confidence 8888877 589999999999886533 8999985
No 94
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=50.70 E-value=21 Score=28.50 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=25.5
Q ss_pred HHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 105 ~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.-+++.||++|.+.+..| +|++ .++|||+++.
T Consensus 194 ~~Ll~~s~~VvtinStvG-----lEAl------l~gkpVi~~G 225 (269)
T PF05159_consen 194 YELLEQSDAVVTINSTVG-----LEAL------LHGKPVIVFG 225 (269)
T ss_pred HHHHHhCCEEEEECCHHH-----HHHH------HcCCceEEec
Confidence 467899999999999887 4454 2599999975
No 95
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=50.31 E-value=35 Score=26.52 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=28.6
Q ss_pred cceEEEEeCCCCCCC-hHHHHHHHHHHHHHHhCCCeE-EEc
Q 032051 14 FKRVCVFCGSSTGKR-NCYRDAALDLGQELVSKKLDL-VYG 52 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~-~~~~~~A~~lG~~lA~~g~~l-v~G 52 (148)
|++|+|+|.-..+.. -=++..+++|+..|+++|+.+ ||.
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc 41 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYC 41 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEE
Confidence 679999975445431 126889999999999988875 543
No 96
>PRK12361 hypothetical protein; Provisional
Probab=50.28 E-value=37 Score=30.22 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCC-eEEEcCCCCChHHHHHHHHhhcCCeEEEEeCC
Q 032051 35 ALDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPK 79 (148)
Q Consensus 35 A~~lG~~lA~~g~-~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~ 79 (148)
|.++.+..++.+. .|+..||. |--..+.++..+. +..+||+|.
T Consensus 286 a~~la~~~~~~~~d~Viv~GGD-GTl~ev~~~l~~~-~~~lgiiP~ 329 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGD-GTVTEVASELVNT-DITLGIIPL 329 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-cHHHHHHHHHhcC-CCCEEEecC
Confidence 3455555555554 34444456 9888888888754 467999994
No 97
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=50.11 E-value=1.3e+02 Score=24.75 Aligned_cols=61 Identities=21% Similarity=0.242 Sum_probs=35.5
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe------------------------------EEEcCCCCChHHHH
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD------------------------------LVYGGGSVGLMGLV 62 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~------------------------------lv~GGG~~GlM~a~ 62 (148)
.+++|+++.-.. .+...+.+.++.++|.++|+. +++-||. |-|--+
T Consensus 4 ~~~~v~iv~~~~---~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~~ 79 (291)
T PRK02155 4 QFKTVALIGRYQ---TPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD-GTMLGI 79 (291)
T ss_pred cCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc-HHHHHH
Confidence 356788885322 234445566666666443322 2334456 777766
Q ss_pred HHHHhhcCCeEEEEe
Q 032051 63 SHVVHRGGGHVLGII 77 (148)
Q Consensus 63 ~~gA~~~GG~viGv~ 77 (148)
++.....+-.++||-
T Consensus 80 ~~~~~~~~~pilGIn 94 (291)
T PRK02155 80 GRQLAPYGVPLIGIN 94 (291)
T ss_pred HHHhcCCCCCEEEEc
Confidence 666666677788874
No 98
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.93 E-value=1.4e+02 Score=24.67 Aligned_cols=61 Identities=26% Similarity=0.233 Sum_probs=38.3
Q ss_pred CCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe-------------------------------EEEcCCCCChHH
Q 032051 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD-------------------------------LVYGGGSVGLMG 60 (148)
Q Consensus 12 ~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~-------------------------------lv~GGG~~GlM~ 60 (148)
+.+++|+++.-.. ++...+.+.++.++|.++|+. ++.| |. |-+-
T Consensus 3 ~~~~~i~iv~~~~---~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lG-GD-GT~L 77 (292)
T PRK03378 3 NHFKCIGIVGHPR---HPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVG-GD-GNML 77 (292)
T ss_pred ccCCEEEEEEeCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEEC-Cc-HHHH
Confidence 4567899995322 345667778888877554432 3334 35 7776
Q ss_pred HHHHHHhhcCCeEEEEe
Q 032051 61 LVSHVVHRGGGHVLGII 77 (148)
Q Consensus 61 a~~~gA~~~GG~viGv~ 77 (148)
.+++-+...+-.++||-
T Consensus 78 ~aa~~~~~~~~Pilgin 94 (292)
T PRK03378 78 GAARVLARYDIKVIGIN 94 (292)
T ss_pred HHHHHhcCCCCeEEEEE
Confidence 67676666666778774
No 99
>PRK13054 lipid kinase; Reviewed
Probab=49.75 E-value=55 Score=26.65 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=22.4
Q ss_pred cCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 110 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 110 ~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
..| .|+.-||=||++|+...+.-.. ..++.|+.++
T Consensus 56 ~~d-~vvv~GGDGTl~evv~~l~~~~-~~~~~~lgii 90 (300)
T PRK13054 56 GVA-TVIAGGGDGTINEVATALAQLE-GDARPALGIL 90 (300)
T ss_pred CCC-EEEEECCccHHHHHHHHHHhhc-cCCCCcEEEE
Confidence 345 5668899999999998773211 1124566664
No 100
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=49.56 E-value=53 Score=28.62 Aligned_cols=93 Identities=17% Similarity=0.260 Sum_probs=0.0
Q ss_pred hCCCeEEEcCCCCC--hHHHHHHHHhhcCCeE--EEEeCCccccccc-----CCCCCceeeecCCHHHHHHHHHHcCCEE
Q 032051 44 SKKLDLVYGGGSVG--LMGLVSHVVHRGGGHV--LGIIPKTLMNKEI-----TGETVGEVKPVADMHQRKAEMARNSDCF 114 (148)
Q Consensus 44 ~~g~~lv~GGG~~G--lM~a~~~gA~~~GG~v--iGv~p~~~~~~e~-----~~~~~~~~~~~~~~~~R~~~~v~~sda~ 114 (148)
+..+-+..|||..| |-+++...+.-.-+.. .-|+..-+.|... ..-.--.-+..-.|..|-.-++..||.+
T Consensus 219 ~~~Ilvs~GGG~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~v 298 (400)
T COG4671 219 GFDILVSVGGGADGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARLV 298 (400)
T ss_pred cceEEEecCCChhhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhee
Q ss_pred EEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 115 IALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 115 IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
|.+ ||+.|.=||..+ +||-+++
T Consensus 299 VSm-~GYNTvCeILs~---------~k~aLiv 320 (400)
T COG4671 299 VSM-GGYNTVCEILSF---------GKPALIV 320 (400)
T ss_pred eec-ccchhhhHHHhC---------CCceEEe
No 101
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=49.52 E-value=12 Score=36.08 Aligned_cols=48 Identities=31% Similarity=0.484 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhc-----------CCeEEEEeCCcccccc
Q 032051 36 LDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRG-----------GGHVLGIIPKTLMNKE 85 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~-----------GG~viGv~p~~~~~~e 85 (148)
-+|+|.|.-+-+.||.||| |-=+++.-|++.+ ||.+||-.-..++..|
T Consensus 829 sRLAR~LtGnaIgLVLGGG--GARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA~e 887 (1158)
T KOG2968|consen 829 SRLARILTGNAIGLVLGGG--GARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYAEE 887 (1158)
T ss_pred HHHHHHHhCCeEEEEecCc--chhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhhcc
Confidence 3488889999999999985 7778888887653 6777776655655544
No 102
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=49.29 E-value=73 Score=23.44 Aligned_cols=63 Identities=27% Similarity=0.307 Sum_probs=42.7
Q ss_pred HHHHhhcCCeEEEEeCCcccccccCCCCCceeeecCCHHHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCc
Q 032051 63 SHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKP 142 (148)
Q Consensus 63 ~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kP 142 (148)
..++.+.||.++.+.|....- -...++.+=-+.|-..+|++|+=.-.-+++.|+.+.. ..|
T Consensus 58 e~A~~~LGg~~i~~~~~~s~~-----------~k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a~~~--------~vP 118 (142)
T PF02729_consen 58 EAAANRLGGHVIYLDPSTSSL-----------GKGESLEDTARVLSRYVDAIVIRHPSHGALEELAEHS--------SVP 118 (142)
T ss_dssp HHHHHHTTCEEEEEETTTSST-----------TTSSEHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHC--------SSE
T ss_pred HHhhhcceeEEEEECcccccC-----------cCCCCHHHHHHHHHHhhheEEEEeccchHHHHHHHhc--------cCC
Confidence 345667899999997543210 1122344334567777999999989999999997654 688
Q ss_pred EE
Q 032051 143 VN 144 (148)
Q Consensus 143 v~ 144 (148)
||
T Consensus 119 VI 120 (142)
T PF02729_consen 119 VI 120 (142)
T ss_dssp EE
T ss_pred eE
Confidence 75
No 103
>PRK12359 flavodoxin FldB; Provisional
Probab=49.16 E-value=57 Score=24.88 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=5.8
Q ss_pred hcCCeEEEEeCC
Q 032051 68 RGGGHVLGIIPK 79 (148)
Q Consensus 68 ~~GG~viGv~p~ 79 (148)
+.|.+++|-.|.
T Consensus 110 ~~Ga~ivG~~~~ 121 (172)
T PRK12359 110 PKGVKFVGYWPT 121 (172)
T ss_pred hCCCeEEeeEeC
Confidence 345555555443
No 104
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=49.11 E-value=45 Score=23.58 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=23.4
Q ss_pred CCeEEEcCCCCChHHHHHHHHhhcCC----eEEEEeCCc
Q 032051 46 KLDLVYGGGSVGLMGLVSHVVHRGGG----HVLGIIPKT 80 (148)
Q Consensus 46 g~~lv~GGG~~GlM~a~~~gA~~~GG----~viGv~p~~ 80 (148)
...++ .||. |....+..+..+... ..+|++|..
T Consensus 51 d~vvv-~GGD-GTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 51 DRVLV-CGGD-GTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred CEEEE-Eccc-cHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 34444 4456 999999998877654 479999954
No 105
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=49.02 E-value=24 Score=28.59 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=22.0
Q ss_pred eEEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 48 DLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 48 ~lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
.|+|||+. |+=.+.++-..+.|-+||--
T Consensus 8 iLITGG~s-GIGl~lak~f~elgN~VIi~ 35 (245)
T COG3967 8 ILITGGAS-GIGLALAKRFLELGNTVIIC 35 (245)
T ss_pred EEEeCCcc-hhhHHHHHHHHHhCCEEEEe
Confidence 36888766 99999999999988877643
No 106
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=48.78 E-value=43 Score=29.67 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCe-EEEcCCCCChHHHHHHHHhhcC------CeEEEEeCC
Q 032051 35 ALDLGQELVSKKLD-LVYGGGSVGLMGLVSHVVHRGG------GHVLGIIPK 79 (148)
Q Consensus 35 A~~lG~~lA~~g~~-lv~GGG~~GlM~a~~~gA~~~G------G~viGv~p~ 79 (148)
|+++.+.+...++. ||.-||. |....+..|-.... ...+||+|.
T Consensus 157 A~~la~~~~~~~~D~VV~vGGD-GTlnEVvNGL~~~~~~~~~~~~pLGiIPa 207 (481)
T PLN02958 157 AKEVVRTMDLSKYDGIVCVSGD-GILVEVVNGLLEREDWKTAIKLPIGMVPA 207 (481)
T ss_pred HHHHHHHhhhcCCCEEEEEcCC-CHHHHHHHHHhhCccccccccCceEEecC
Confidence 44555555555543 4444556 99999999987542 356999994
No 107
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=48.51 E-value=91 Score=25.63 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=33.6
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCc
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT 80 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~ 80 (148)
+++++.|-| ++.+ ..+++++.||++|+.|+.=+-..=-++++++.-.+..|.-+=++|-+
T Consensus 5 ~~~~~lITG-ASsG-------IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~D 64 (265)
T COG0300 5 KGKTALITG-ASSG-------IGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPAD 64 (265)
T ss_pred CCcEEEEEC-CCch-------HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECc
Confidence 344555554 4433 33567777788888876655554555555555554444444455543
No 108
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=48.40 E-value=28 Score=26.27 Aligned_cols=40 Identities=33% Similarity=0.350 Sum_probs=22.0
Q ss_pred HcCCEEEEecCc-----hhhHHHHHHHHHHHHh-CCCCCcEEEecC
Q 032051 109 RNSDCFIALPGG-----YGTLEELLEVITWAQL-GIHDKPVNQLHV 148 (148)
Q Consensus 109 ~~sda~IvlpGG-----~GTL~El~~~~~~~~l-g~~~kPv~l~n~ 148 (148)
..+|.+|+.+|| ..........+.+... ...+||++++.+
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~ 107 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQ 107 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECc
Confidence 567888888885 1222221111222222 247999999864
No 109
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=48.30 E-value=1e+02 Score=25.76 Aligned_cols=83 Identities=22% Similarity=0.317 Sum_probs=44.5
Q ss_pred CCeEEEcCCCCChHHHHHHHHhhcCC-eEEEEeCCcccccccCCCCC-ceeeecC---CHHHHHHHHHH--cCCEEEEec
Q 032051 46 KLDLVYGGGSVGLMGLVSHVVHRGGG-HVLGIIPKTLMNKEITGETV-GEVKPVA---DMHQRKAEMAR--NSDCFIALP 118 (148)
Q Consensus 46 g~~lv~GGG~~GlM~a~~~gA~~~GG-~viGv~p~~~~~~e~~~~~~-~~~~~~~---~~~~R~~~~v~--~sda~Ivlp 118 (148)
+..+|.|.|+.|+|-++ .|...|. ++|.+ .......+.+.+.. .+.+... +...+...+.. -+|.++-.-
T Consensus 170 ~~V~V~GaGpIGLla~~--~a~~~Ga~~Viv~-d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 170 GTVVVVGAGPIGLLAIA--LAKLLGASVVIVV-DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CEEEEECCCHHHHHHHH--HHHHcCCceEEEe-CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 45789999999999844 3444664 44444 21112223333312 2322221 22233333332 389999998
Q ss_pred CchhhHHHHHHHH
Q 032051 119 GGYGTLEELLEVI 131 (148)
Q Consensus 119 GG~GTL~El~~~~ 131 (148)
|-.-|+++...+.
T Consensus 247 G~~~~~~~ai~~~ 259 (350)
T COG1063 247 GSPPALDQALEAL 259 (350)
T ss_pred CCHHHHHHHHHHh
Confidence 9666666666554
No 110
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=48.22 E-value=65 Score=24.30 Aligned_cols=41 Identities=5% Similarity=0.098 Sum_probs=28.2
Q ss_pred HhhccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 7 AAKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 7 ~~~~~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
+...+..++.|+|. |...+.... -.+..|+..+|++|..++
T Consensus 10 l~~~~~~~kvI~v~-s~kgG~GKT--t~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 10 IQFSGAEIKVLLIT-SVKPGEGKS--TTSANIAVAFAQAGYKTL 50 (204)
T ss_pred HhhhcCCCcEEEEe-cCCCCCCHH--HHHHHHHHHHHhCCCeEE
Confidence 34455667788887 455454432 468889999999998765
No 111
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=48.05 E-value=89 Score=27.38 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhC-----CCeEEEcCC---CCChHHHHHHHHhhcCC--eEEEEeCCcccccccCCCCCceeeecCCHHH
Q 032051 33 DAALDLGQELVSK-----KLDLVYGGG---SVGLMGLVSHVVHRGGG--HVLGIIPKTLMNKEITGETVGEVKPVADMHQ 102 (148)
Q Consensus 33 ~~A~~lG~~lA~~-----g~~lv~GGG---~~GlM~a~~~gA~~~GG--~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~ 102 (148)
+.|..++..+|++ +.-.+||+- .+=||.|+...+.+.+- +++.+....+. +++...+.-..|.+
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~------~~~v~a~~~~~~~~ 169 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT------NDFVKALRDNEMEK 169 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH------HHHHHHHHhhhHHH
Confidence 6778888888873 555788762 22389999999999876 55555332221 11111111234432
Q ss_pred HHHHHHHcCCEEEE-----ecCchhhHHHHHHHHHHHHhCCCCCcEEE
Q 032051 103 RKAEMARNSDCFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVNQ 145 (148)
Q Consensus 103 R~~~~v~~sda~Iv-----lpGG~GTL~El~~~~~~~~lg~~~kPv~l 145 (148)
=|... +.|.+++ +.|.-.|.+|+|.... .+...+|-|++
T Consensus 170 Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN--~l~~~~kqIvl 213 (408)
T COG0593 170 FKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFN--ALLENGKQIVL 213 (408)
T ss_pred HHHhh--ccCeeeechHhHhcCChhHHHHHHHHHH--HHHhcCCEEEE
Confidence 22222 7888775 6788899999998775 34344554443
No 112
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=47.77 E-value=41 Score=23.67 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=18.4
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
|+|+|+|.|.... +.++.+-+.|.++|+.+.
T Consensus 1 ksiAVvGaS~~~~-----~~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNPG-----KFGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SSTT-----SHHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCCC-----ChHHHHHHHHHhCCCEEE
Confidence 5899998776432 235667777777887764
No 113
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=47.00 E-value=57 Score=25.78 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=51.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhhcCC-eEEEEeCCccc--ccccCCCC---Cc--eeeecCCHHHHHHHHHHcCCEEE--E
Q 032051 47 LDLVYGGGSVGLMGLVSHVVHRGGG-HVLGIIPKTLM--NKEITGET---VG--EVKPVADMHQRKAEMARNSDCFI--A 116 (148)
Q Consensus 47 ~~lv~GGG~~GlM~a~~~gA~~~GG-~viGv~p~~~~--~~e~~~~~---~~--~~~~~~~~~~R~~~~v~~sda~I--v 116 (148)
+.+++|.|..|=.+-++--.+..-| .|.-+.+.... +.+..... +. ..+....... ....+|.+| +
T Consensus 52 v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~~~~----~~~~~dvIVDal 127 (203)
T COG0062 52 VLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKELED----EPESADVIVDAL 127 (203)
T ss_pred EEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeeccccc----ccccCCEEEEec
Confidence 7789999999999988777776555 44444322111 01110000 00 1111111111 456778766 3
Q ss_pred ec-CchhhHHHHHHHHHHHHhCCCCCcEEEecC
Q 032051 117 LP-GGYGTLEELLEVITWAQLGIHDKPVNQLHV 148 (148)
Q Consensus 117 lp-GG~GTL~El~~~~~~~~lg~~~kPv~l~n~ 148 (148)
|+ |-.|.+.|-+..+ ..+++..++||+-+++
T Consensus 128 fG~G~~g~lrep~a~~-Ie~iN~~~~pivAVDi 159 (203)
T COG0062 128 FGTGLSGPLREPFASL-IEAINASGKPIVAVDI 159 (203)
T ss_pred eecCCCCCCccHHHHH-HHHHHhcCCceEEEeC
Confidence 33 6667777664333 2245578999998764
No 114
>PRK05568 flavodoxin; Provisional
Probab=46.73 E-value=35 Score=24.17 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=22.4
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
+++.|+..|..++. .+.|+.+.+.+.+.|+.+
T Consensus 2 ~~~~IvY~S~~GnT---~~~a~~i~~~~~~~g~~v 33 (142)
T PRK05568 2 KKINIIYWSGTGNT---EAMANLIAEGAKENGAEV 33 (142)
T ss_pred CeEEEEEECCCchH---HHHHHHHHHHHHHCCCeE
Confidence 45666667777754 367788888887777754
No 115
>PRK13055 putative lipid kinase; Reviewed
Probab=46.68 E-value=44 Score=27.80 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCC-eEEEcCCCCChHHHHHHHHhhcC-CeEEEEeCCc
Q 032051 36 LDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGG-GHVLGIIPKT 80 (148)
Q Consensus 36 ~~lG~~lA~~g~-~lv~GGG~~GlM~a~~~gA~~~G-G~viGv~p~~ 80 (148)
.++.+..++.++ .|+..||. |-+..++.|....+ ...+||+|..
T Consensus 49 ~~~~~~~~~~~~d~vvv~GGD-GTl~evvngl~~~~~~~~LgiiP~G 94 (334)
T PRK13055 49 KNEAKRAAEAGFDLIIAAGGD-GTINEVVNGIAPLEKRPKMAIIPAG 94 (334)
T ss_pred HHHHHHHhhcCCCEEEEECCC-CHHHHHHHHHhhcCCCCcEEEECCC
Confidence 444444445543 23444456 99999999988654 4569999943
No 116
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=46.60 E-value=35 Score=24.12 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=26.6
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
|+|+|++|-.....+.=...|+.+-+.|.+.+|.++
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~ 36 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVI 36 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEE
Confidence 466666665655555556888999999988999876
No 117
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=45.94 E-value=84 Score=28.09 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=45.2
Q ss_pred EEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCceeeecCCHHHHHHHHHHcCCEEEEecCchhhHH-HH
Q 032051 49 LVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLE-EL 127 (148)
Q Consensus 49 lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~-El 127 (148)
+|.|.|. +=..+++-+...|.+|+.+-+......+..... ....++. -+++.||.+|..+|..+.++ |.
T Consensus 258 gVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G----~~~~~le----ell~~ADIVI~atGt~~iI~~e~ 327 (476)
T PTZ00075 258 VVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQAAMEG----YQVVTLE----DVVETADIFVTATGNKDIITLEH 327 (476)
T ss_pred EEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcC----ceeccHH----HHHhcCCEEEECCCcccccCHHH
Confidence 4677654 555677777778888877632211110000011 1112333 24678999999988777765 55
Q ss_pred HHHHHHHHhCCCCCcEEEecC
Q 032051 128 LEVITWAQLGIHDKPVNQLHV 148 (148)
Q Consensus 128 ~~~~~~~~lg~~~kPv~l~n~ 148 (148)
+..+ ++-.+++|+
T Consensus 328 ~~~M--------KpGAiLINv 340 (476)
T PTZ00075 328 MRRM--------KNNAIVGNI 340 (476)
T ss_pred Hhcc--------CCCcEEEEc
Confidence 4443 444666664
No 118
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=45.60 E-value=1.5e+02 Score=23.47 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEe
Q 032051 33 DAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 33 ~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~ 77 (148)
+.++++++.|-.+|..+|+..+ .+ ..+.+.|.+.|..+||+-
T Consensus 166 ~~a~~~a~~l~~~G~DvI~~~~-~~--~g~~~aa~~~g~~~IG~d 207 (258)
T cd06353 166 AKEKEAALALIDQGADVIYQHT-DS--PGVIQAAEEKGVYAIGYV 207 (258)
T ss_pred HHHHHHHHHHHHCCCcEEEecC-CC--hHHHHHHHHhCCEEEeec
Confidence 5667777777788999988874 23 245566778899999994
No 119
>PRK13057 putative lipid kinase; Reviewed
Probab=45.56 E-value=30 Score=27.91 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=22.5
Q ss_pred HcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 109 ~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
...| .|+.-||=||++|+...+. ..+.|+.++
T Consensus 49 ~~~d-~iiv~GGDGTv~~v~~~l~-----~~~~~lgii 80 (287)
T PRK13057 49 DGVD-LVIVGGGDGTLNAAAPALV-----ETGLPLGIL 80 (287)
T ss_pred cCCC-EEEEECchHHHHHHHHHHh-----cCCCcEEEE
Confidence 3345 5667899999999987763 135777765
No 120
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=45.52 E-value=1.4e+02 Score=23.13 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEcCCCCCh
Q 032051 29 NCYRDAALDLGQELVSKKLDLVYGGGSVGL 58 (148)
Q Consensus 29 ~~~~~~A~~lG~~lA~~g~~lv~GGG~~Gl 58 (148)
+...+.+..+.+.+.+.+..+++|-|..+.
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~ 54 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAA 54 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHH
Confidence 446667777777777778888888655443
No 121
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=45.28 E-value=65 Score=22.90 Aligned_cols=40 Identities=28% Similarity=0.441 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHh----CCCe-EEEc-CC--CCChHHHHHHHHhhcCC
Q 032051 32 RDAALDLGQELVS----KKLD-LVYG-GG--SVGLMGLVSHVVHRGGG 71 (148)
Q Consensus 32 ~~~A~~lG~~lA~----~g~~-lv~G-GG--~~GlM~a~~~gA~~~GG 71 (148)
.+.|+.+|+.||+ .|+. +++= || +.|-+.|+++||.++|=
T Consensus 60 ~~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~GL 107 (109)
T CHL00139 60 CDASKLVGQKLAKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAGL 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhCC
Confidence 4588889998886 3544 3332 22 47899999999999873
No 122
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=45.16 E-value=27 Score=27.62 Aligned_cols=44 Identities=5% Similarity=-0.008 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEecC
Q 032051 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLHV 148 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n~ 148 (148)
.++....++.+|.+|+++ |--++.-++.+.+...++.|++++|.
T Consensus 162 ~~~~~~~~~~~DlllviG----TSl~v~p~~~l~~~~~~~~~~i~iN~ 205 (225)
T cd01411 162 IEEAIQAIEKADLLVIVG----TSFVVYPFAGLIDYRQAGANLIAINK 205 (225)
T ss_pred HHHHHHHHhcCCEEEEEC----cCCeehhHHHHHHHHhCCCeEEEECC
Confidence 356667778899888844 44344444544443336889999984
No 123
>PRK13057 putative lipid kinase; Reviewed
Probab=45.03 E-value=54 Score=26.46 Aligned_cols=43 Identities=26% Similarity=0.445 Sum_probs=27.4
Q ss_pred HHHHHHHHHhC-CCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCc
Q 032051 35 ALDLGQELVSK-KLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT 80 (148)
Q Consensus 35 A~~lG~~lA~~-g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~ 80 (148)
|.++.+.+.+. ...++ .||. |-...+.++.... +..+||+|..
T Consensus 40 a~~~~~~~~~~~d~iiv-~GGD-GTv~~v~~~l~~~-~~~lgiiP~G 83 (287)
T PRK13057 40 LSEVIEAYADGVDLVIV-GGGD-GTLNAAAPALVET-GLPLGILPLG 83 (287)
T ss_pred HHHHHHHHHcCCCEEEE-ECch-HHHHHHHHHHhcC-CCcEEEECCC
Confidence 44444443332 33444 4456 9999999998765 4679999943
No 124
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=44.78 E-value=62 Score=22.95 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=22.2
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
+.|+|++ +..+.. -...|..|++.||+++..++
T Consensus 1 k~i~v~s-~~~g~G--~t~~a~~lA~~la~~~~~Vl 33 (157)
T PF13614_consen 1 KVIAVWS-PKGGVG--KTTLALNLAAALARKGKKVL 33 (157)
T ss_dssp EEEEEEE-SSTTSS--HHHHHHHHHHHHHHTTT-EE
T ss_pred CEEEEEC-CCCCCC--HHHHHHHHHHHHHhcCCCeE
Confidence 4688885 443333 34678999999999986543
No 125
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=43.92 E-value=43 Score=26.88 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=25.8
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
+|+|.+|+.....+.-.+.++++-++|.+.||.+..
T Consensus 6 ~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~ 41 (304)
T PRK01372 6 KVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHP 41 (304)
T ss_pred EEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEE
Confidence 678877665544433346789999999999998743
No 126
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=43.75 E-value=37 Score=24.32 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=22.0
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
++.|+.+|..++. .+.|+.+.+.|...|+.+
T Consensus 2 ~i~IiY~S~tGnT---e~iA~~ia~~l~~~g~~v 32 (140)
T TIGR01754 2 RILLAYLSLSGNT---EEVAFMIQDYLQKDGHEV 32 (140)
T ss_pred eEEEEEECCCChH---HHHHHHHHHHHhhCCeeE
Confidence 4566667787753 367888888887778765
No 127
>PRK08862 short chain dehydrogenase; Provisional
Probab=43.24 E-value=1.4e+02 Score=22.96 Aligned_cols=30 Identities=7% Similarity=0.018 Sum_probs=17.8
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
+++.|.|+++ -..+++++.|+++|+.|+.-
T Consensus 6 k~~lVtGas~--------GIG~aia~~la~~G~~V~~~ 35 (227)
T PRK08862 6 SIILITSAGS--------VLGRTISCHFARLGATLILC 35 (227)
T ss_pred eEEEEECCcc--------HHHHHHHHHHHHCCCEEEEE
Confidence 4566666554 23455666677777776543
No 128
>PRK00861 putative lipid kinase; Reviewed
Probab=43.10 E-value=73 Score=25.83 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=21.4
Q ss_pred CCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 111 sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
.| +|+.-||=||++|+...+. .++.|+.++
T Consensus 58 ~d-~vv~~GGDGTl~evv~~l~-----~~~~~lgvi 87 (300)
T PRK00861 58 AE-LIIASGGDGTLSAVAGALI-----GTDIPLGII 87 (300)
T ss_pred CC-EEEEECChHHHHHHHHHHh-----cCCCcEEEE
Confidence 45 4557899999999987773 135677664
No 129
>PRK06443 chorismate mutase; Validated
Probab=42.88 E-value=79 Score=24.62 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeC
Q 032051 31 YRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIP 78 (148)
Q Consensus 31 ~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p 78 (148)
|-..|+.||..+...||.++ . . -+......|+..+||+++-=.|
T Consensus 92 y~~~~~sl~~~~~~~g~~v~-i--~-~~~~~~~~~~~~~~~~~~~~~~ 135 (177)
T PRK06443 92 YDSLILSLGLILSRPGIEIY-I--E-DNPDSIEEGCSKAGGHVVIGLP 135 (177)
T ss_pred hHHHHHHHHHHHhcCCcEEE-e--c-cCchHHHHhhhhcCCeEecCCC
Confidence 77899999999999999975 2 3 3788999999999998764334
No 130
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=42.79 E-value=2e+02 Score=23.91 Aligned_cols=38 Identities=32% Similarity=0.553 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHc------CCEEEEecCchhhHHHHHHHHHHHHhC
Q 032051 99 DMHQRKAEMARN------SDCFIALPGGYGTLEELLEVITWAQLG 137 (148)
Q Consensus 99 ~~~~R~~~~v~~------sda~IvlpGG~GTL~El~~~~~~~~lg 137 (148)
+-.+|-.-+.+. .|+++..-||.|+. ++..-+.|..+.
T Consensus 49 td~~Ra~dL~~a~a~~dpi~aI~~~rGGyg~~-rlLp~Ld~~~i~ 92 (305)
T PRK11253 49 TDGERLADLNSLADLTTPNTIVLAVRGGYGAS-RLLAGIDWQGLA 92 (305)
T ss_pred CHHHHHHHHHHHHhcCCCccEEEEecccCCHh-HhhhhCCHHHHh
Confidence 445565555432 67999999999985 466666666554
No 131
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=42.68 E-value=69 Score=24.66 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=20.5
Q ss_pred HcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 109 ~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
...|++|+.|....++++..+.+. .++.|++++|
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~-----~~~iPvV~~~ 89 (275)
T cd06320 56 KGYKGLLFSPISDVNLVPAVERAK-----KKGIPVVNVN 89 (275)
T ss_pred hCCCEEEECCCChHHhHHHHHHHH-----HCCCeEEEEC
Confidence 457888777765555555544332 2467887775
No 132
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=42.66 E-value=1.2e+02 Score=24.81 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCe--EEEEeCC
Q 032051 33 DAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGH--VLGIIPK 79 (148)
Q Consensus 33 ~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~--viGv~p~ 79 (148)
..++++++.|-.+|..+++.-+. +.-..+.+.|.+.|.. +||+--+
T Consensus 175 ~~~~~~a~~li~~GaDvI~~~ag-~~~~gv~~aa~e~g~~~~~IG~d~d 222 (306)
T PF02608_consen 175 AKAKEAAEALIDQGADVIFPVAG-GSGQGVIQAAKEAGVYGYVIGVDSD 222 (306)
T ss_dssp HHHHHHHHHHHHTT-SEEEEE-C-CCHHHHHHHHHHHTHETEEEEEES-
T ss_pred HHHHHHHHHHhhcCCeEEEECCC-CCchHHHHHHHHcCCceEEEEeccc
Confidence 67788998888899999988322 6666777778888887 9998543
No 133
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.33 E-value=1.8e+02 Score=24.03 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=20.8
Q ss_pred CCeEEEcCCCCChHHHHHHHHhhcCCeEEEEe
Q 032051 46 KLDLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 46 g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~ 77 (148)
+..++.| |. |-+-.+++.....+-+++||-
T Consensus 59 d~vi~~G-GD-GT~l~~~~~~~~~~~pv~gin 88 (305)
T PRK02645 59 DLAIVLG-GD-GTVLAAARHLAPHDIPILSVN 88 (305)
T ss_pred CEEEEEC-Cc-HHHHHHHHHhccCCCCEEEEe
Confidence 5555655 46 888888888776666666664
No 134
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=42.14 E-value=27 Score=30.62 Aligned_cols=27 Identities=41% Similarity=0.660 Sum_probs=20.5
Q ss_pred eEEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 48 DLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 48 ~lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
.+|-|||+.|+|.|+..+- +|.+|+-+
T Consensus 6 viIIGgGpAGlMaA~~aa~--~G~~V~li 32 (408)
T COG2081 6 VIIIGGGPAGLMAAISAAK--AGRRVLLI 32 (408)
T ss_pred EEEECCCHHHHHHHHHHhh--cCCEEEEE
Confidence 3577999999999988654 66666655
No 135
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=41.90 E-value=49 Score=23.85 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHh----CCCe-EEE-cC--CCCChHHHHHHHHhhcCC
Q 032051 32 RDAALDLGQELVS----KKLD-LVY-GG--GSVGLMGLVSHVVHRGGG 71 (148)
Q Consensus 32 ~~~A~~lG~~lA~----~g~~-lv~-GG--G~~GlM~a~~~gA~~~GG 71 (148)
.+.|+.+|+.||+ .|+. +++ =| =+.|-+.|+++||.++|=
T Consensus 68 ~~aa~~vG~~la~ra~~~gi~~vvfDrg~~~yhGrV~a~a~~are~Gl 115 (117)
T PRK05593 68 KEAAKKVGKLIAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAGL 115 (117)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCcccHHHHHHHHHHHHhCC
Confidence 3568888888886 3544 222 22 247899999999999873
No 136
>PRK13937 phosphoheptose isomerase; Provisional
Probab=41.36 E-value=70 Score=24.29 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEcCCCCChH
Q 032051 29 NCYRDAALDLGQELVSKKLDLVYGGGSVGLM 59 (148)
Q Consensus 29 ~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM 59 (148)
+...+.|+++.+.|.+.+...++|.|..+..
T Consensus 22 ~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~ 52 (188)
T PRK13937 22 EAIAKVAEALIEALANGGKILLCGNGGSAAD 52 (188)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHH
Confidence 5677888999999988888889998775543
No 137
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.29 E-value=1.8e+02 Score=24.21 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=19.8
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD 48 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~ 48 (148)
|++|+++.-. . .+...+.+.++.++|.++|+.
T Consensus 1 m~~igiv~n~--~-~~~~~~~~~~l~~~L~~~g~~ 32 (305)
T PRK02649 1 MPKAGIIYND--G-KPLAVRTAEELQDKLEAAGWE 32 (305)
T ss_pred CCEEEEEEcC--C-CHHHHHHHHHHHHHHHHCCCE
Confidence 4568888532 2 344567778888877655543
No 138
>PRK07308 flavodoxin; Validated
Probab=40.88 E-value=43 Score=24.11 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=22.5
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
+|.|+.+|..++. .+.|+.+++.|.+.|+.+
T Consensus 3 ~~~IvY~S~tGnT---e~iA~~ia~~l~~~g~~~ 33 (146)
T PRK07308 3 LAKIVYASMTGNT---EEIADIVADKLRELGHDV 33 (146)
T ss_pred eEEEEEECCCchH---HHHHHHHHHHHHhCCCce
Confidence 4666667777743 477888888888877754
No 139
>PRK06703 flavodoxin; Provisional
Probab=40.85 E-value=86 Score=22.55 Aligned_cols=9 Identities=11% Similarity=0.279 Sum_probs=4.8
Q ss_pred hhcCCeEEE
Q 032051 67 HRGGGHVLG 75 (148)
Q Consensus 67 ~~~GG~viG 75 (148)
.+.|..+++
T Consensus 110 ~~~G~~~~~ 118 (151)
T PRK06703 110 VERGAELVQ 118 (151)
T ss_pred HHCCCEEcc
Confidence 345665554
No 140
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=40.75 E-value=1.7e+02 Score=22.68 Aligned_cols=46 Identities=7% Similarity=-0.091 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCeE-EEcCCCCChHHHHHHHHhhcCCeEEEEeCC
Q 032051 34 AALDLGQELVSKKLDL-VYGGGSVGLMGLVSHVVHRGGGHVLGIIPK 79 (148)
Q Consensus 34 ~A~~lG~~lA~~g~~l-v~GGG~~GlM~a~~~gA~~~GG~viGv~p~ 79 (148)
.++++...+.+.+.-+ ++..|..--+-.+++-|++.|.++|+++..
T Consensus 99 f~~ql~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~ 145 (196)
T PRK10886 99 YAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_pred HHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3445544443444443 666667677777888899999999999754
No 141
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.61 E-value=76 Score=24.69 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=25.0
Q ss_pred HHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 105 ~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.++-...|++|+.|......+++...+. ..+.|++++|
T Consensus 50 ~~~~~~vdgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~ 87 (272)
T cd06313 50 NMASQGWDFIAVDPLGIGTLTEAVQKAI-----ARGIPVIDMG 87 (272)
T ss_pred HHHHcCCCEEEEcCCChHHhHHHHHHHH-----HCCCcEEEeC
Confidence 3444668999998876555565543332 2478999887
No 142
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=40.55 E-value=65 Score=26.88 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=28.6
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
|.+|+|++|-.....+.=...|+.+.+.|-+.||.++.
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~ 38 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKP 38 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEE
Confidence 34688877766555555568899999999999998753
No 143
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=40.16 E-value=77 Score=24.33 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 106 ~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
++-...|++|+.+....++++....+. ..+.|++++|
T Consensus 56 ~~~~~vdgiIi~~~~~~~~~~~l~~~~-----~~~iPvv~~~ 92 (272)
T cd06300 56 LIAQGVDAIIINPASPTALNPVIEEAC-----EAGIPVVSFD 92 (272)
T ss_pred HHHcCCCEEEEeCCChhhhHHHHHHHH-----HCCCeEEEEe
Confidence 444578888888866555555433322 2467888776
No 144
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=40.14 E-value=81 Score=21.68 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhC----CCe-EE-EcCCC--CChHHHHHHHHhhcC
Q 032051 32 RDAALDLGQELVSK----KLD-LV-YGGGS--VGLMGLVSHVVHRGG 70 (148)
Q Consensus 32 ~~~A~~lG~~lA~~----g~~-lv-~GGG~--~GlM~a~~~gA~~~G 70 (148)
.+.|+.+|+.||++ |+. ++ -=|++ .|-..|+.+++.+.|
T Consensus 56 ~~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 56 VEAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 47888999888863 333 22 11223 489999999999876
No 145
>PRK13337 putative lipid kinase; Reviewed
Probab=39.80 E-value=82 Score=25.66 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=21.5
Q ss_pred CCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 111 sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
.| .|+.-||=||++|+...+. +.+ ...|+.++
T Consensus 58 ~d-~vvv~GGDGTl~~vv~gl~--~~~-~~~~lgii 89 (304)
T PRK13337 58 FD-LVIAAGGDGTLNEVVNGIA--EKE-NRPKLGII 89 (304)
T ss_pred CC-EEEEEcCCCHHHHHHHHHh--hCC-CCCcEEEE
Confidence 35 5778899999999998763 111 24566654
No 146
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=39.64 E-value=44 Score=24.68 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCEEEEecCch--hhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 101 HQRKAEMARNSDCFIALPGGY--GTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~--GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
......++..||++++-+--+ ||+++|.+.. ...++++++.
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~------~~~~~vil~G 95 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELA------RNAREVILYG 95 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHT------TTSSEEEEES
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhC------ccCCeEEEEe
Confidence 456778899999988876433 9999997665 2468888874
No 147
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=39.59 E-value=91 Score=25.02 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=22.4
Q ss_pred EEEcCCCCChHHHHHHHHhhcC-CeEEEEeCCc
Q 032051 49 LVYGGGSVGLMGLVSHVVHRGG-GHVLGIIPKT 80 (148)
Q Consensus 49 lv~GGG~~GlM~a~~~gA~~~G-G~viGv~p~~ 80 (148)
++.-||. |-...+.++..... ...+|++|..
T Consensus 61 ivv~GGD-GTl~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 61 VIAGGGD-GTINEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred EEEECCC-ChHHHHHHHHhcCCCCCcEEEEcCc
Confidence 3444456 99999999987743 3589999953
No 148
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=39.49 E-value=1.8e+02 Score=23.96 Aligned_cols=68 Identities=4% Similarity=-0.011 Sum_probs=43.4
Q ss_pred ceEEEEeCCCCCC---ChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHH--HHHhhcCCeEEEEeCCcccc
Q 032051 15 KRVCVFCGSSTGK---RNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVS--HVVHRGGGHVLGIIPKTLMN 83 (148)
Q Consensus 15 ~~V~V~ggs~~~~---~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~--~gA~~~GG~viGv~p~~~~~ 83 (148)
..|.|.|++.... +++..+..+...+. +.....|+.|-|..+.-+++. +-|.+.|-.-+-++|..+.+
T Consensus 44 ~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~-~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~ 116 (309)
T cd00952 44 DGILTMGTFGECATLTWEEKQAFVATVVET-VAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLP 116 (309)
T ss_pred CEEEECcccccchhCCHHHHHHHHHHHHHH-hCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCC
Confidence 4566777665433 33444444443333 445688888888778888774 66778898888888765543
No 149
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=39.36 E-value=33 Score=27.13 Aligned_cols=37 Identities=14% Similarity=-0.022 Sum_probs=19.1
Q ss_pred ceEEEEeCCCCCCC-hHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 15 KRVCVFCGSSTGKR-NCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 15 ~~V~V~ggs~~~~~-~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
++|+|+.++-..-+ -+..| +..-=..|-+.|+.+..=
T Consensus 2 kkVlills~~~~~dG~e~~E-~~~P~~~L~~aG~~V~~a 39 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHE-AVLTLLALDRAGAEAVCF 39 (217)
T ss_pred CEEEEEEccCCCCCCEehhH-HHHHHHHHHHCCCEEEEE
Confidence 57888875321111 11212 223345677889987553
No 150
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=38.92 E-value=27 Score=27.81 Aligned_cols=44 Identities=9% Similarity=0.048 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEecC
Q 032051 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLHV 148 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n~ 148 (148)
..+....++.||.+|+++=..-. .-+..+.+.-..+.|++++|.
T Consensus 166 ~~~~~~~~~~aDlllvvGTSl~V----~pa~~l~~~~~~~~~~v~iN~ 209 (235)
T cd01408 166 FSHMEEDKEEADLLIVIGTSLKV----APFASLPSRVPSEVPRVLINR 209 (235)
T ss_pred HHHHHHHHhcCCEEEEECCCCee----ccHHHHHHHHhCCCcEEEEeC
Confidence 45665677889999997543222 112222111124689999984
No 151
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=38.67 E-value=89 Score=22.23 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
+|.++.||... +..-.+.++.+.+.+.+.|+.+
T Consensus 2 kilii~gS~r~-~~~t~~l~~~~~~~l~~~g~e~ 34 (152)
T PF03358_consen 2 KILIINGSPRK-NSNTRKLAEAVAEQLEEAGAEV 34 (152)
T ss_dssp EEEEEESSSST-TSHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEEEECcCCC-CCHHHHHHHHHHHHHHHcCCEE
Confidence 45555455433 2345578888888888877665
No 152
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=38.33 E-value=48 Score=26.31 Aligned_cols=27 Identities=19% Similarity=0.200 Sum_probs=19.3
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHh
Q 032051 18 CVFCGSSTGKRNCYRDAALDLGQELVS 44 (148)
Q Consensus 18 ~V~ggs~~~~~~~~~~~A~~lG~~lA~ 44 (148)
.=||||...+.+.+.+.++++.++..+
T Consensus 4 iK~GGs~l~~~~~~~~~~~~I~~~~~~ 30 (244)
T cd04260 4 QKFGGTSVSTKERREQVAKKVKQAVDE 30 (244)
T ss_pred EEECchhcCCHHHHHHHHHHHHHHHHC
Confidence 338999987666677777777776644
No 153
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=38.30 E-value=29 Score=27.91 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=20.1
Q ss_pred HHHcCCEEEEecCchhhHHHHHH--HHHHHH-hCCCCCcEEE
Q 032051 107 MARNSDCFIALPGGYGTLEELLE--VITWAQ-LGIHDKPVNQ 145 (148)
Q Consensus 107 ~v~~sda~IvlpGG~GTL~El~~--~~~~~~-lg~~~kPv~l 145 (148)
++..+|++++ +.||+.+-.. +....+ ...+++|+|+
T Consensus 51 ~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pvVl 89 (263)
T PRK09355 51 MAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPVVL 89 (263)
T ss_pred HHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 3578899888 5555544322 222222 2346789764
No 154
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=38.10 E-value=1e+02 Score=21.39 Aligned_cols=7 Identities=14% Similarity=0.653 Sum_probs=3.4
Q ss_pred cCCeEEE
Q 032051 69 GGGHVLG 75 (148)
Q Consensus 69 ~GG~viG 75 (148)
.|.++++
T Consensus 109 ~g~~~v~ 115 (140)
T TIGR01753 109 AGATIIA 115 (140)
T ss_pred CCCEEec
Confidence 4555443
No 155
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=38.08 E-value=73 Score=26.35 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=27.4
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
+++|+|.+|......+.=...++.+.+.|.+.||.++
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 3467777766655555556889999999988999874
No 156
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=38.06 E-value=2e+02 Score=22.63 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=56.1
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE--EEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccc--cCC
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL--VYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKE--ITG 88 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l--v~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e--~~~ 88 (148)
..+.|+|+=+. + .+.+.++++.|.+.|+.+ ++=-.+ +..+++.+=..+.....+|.-. -+.+.+ ...
T Consensus 7 ~~~liaVlr~~----~---~e~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~~~~vGAGT-Vl~~~~a~~a~ 77 (204)
T TIGR01182 7 EAKIVPVIRID----D---VDDALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVPDALIGAGT-VLNPEQLRQAV 77 (204)
T ss_pred hCCEEEEEecC----C---HHHHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEEEEe-CCCHHHHHHHH
Confidence 44577777321 1 256678888888887765 333334 6666666555555556677621 111110 011
Q ss_pred CCCceeeecCCHHHHHHHHHHcCCEEEEecCchhhHHHHHHHHH
Q 032051 89 ETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVIT 132 (148)
Q Consensus 89 ~~~~~~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~ 132 (148)
+--.+.++.+++.. ..+-......+..+| |.-|.+|+..+|.
T Consensus 78 ~aGA~FivsP~~~~-~v~~~~~~~~i~~iP-G~~TptEi~~A~~ 119 (204)
T TIGR01182 78 DAGAQFIVSPGLTP-ELAKHAQDHGIPIIP-GVATPSEIMLALE 119 (204)
T ss_pred HcCCCEEECCCCCH-HHHHHHHHcCCcEEC-CCCCHHHHHHHHH
Confidence 11123444444422 222122223456677 6678888888874
No 157
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=38.04 E-value=30 Score=24.93 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=17.5
Q ss_pred EEEecCchhhHHHHH-H---HHHHHH-hCCCCCcEEEe
Q 032051 114 FIALPGGYGTLEELL-E---VITWAQ-LGIHDKPVNQL 146 (148)
Q Consensus 114 ~IvlpGG~GTL~El~-~---~~~~~~-lg~~~kPv~l~ 146 (148)
.|++|||.|..+-+. . ...+.+ ...++|||..+
T Consensus 40 alilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaI 77 (147)
T PF01965_consen 40 ALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAI 77 (147)
T ss_dssp EEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEE
T ss_pred EEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEec
Confidence 678899999665554 1 222222 12358888754
No 158
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=38.04 E-value=1.8e+02 Score=22.36 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=37.8
Q ss_pred CeEEEcCCCCChHHHH-HHHHhhcCCeEEEEeCCcccccccCCCCCceeeec---CCHHHHHHHHHHcCCEEEEe
Q 032051 47 LDLVYGGGSVGLMGLV-SHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPV---ADMHQRKAEMARNSDCFIAL 117 (148)
Q Consensus 47 ~~lv~GGG~~GlM~a~-~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~~~~---~~~~~R~~~~v~~sda~Ivl 117 (148)
.+.++--. .|-|+.+ ++.|...|..|+-|.-.... ..++..+.+.+ .+|.+.-.-.+..+|++|..
T Consensus 20 VR~ItN~S-SG~~G~~lA~~~~~~Ga~V~li~g~~~~----~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~a 89 (185)
T PF04127_consen 20 VRFITNRS-SGKMGAALAEEAARRGAEVTLIHGPSSL----PPPPGVKVIRVESAEEMLEAVKELLPSADIIIMA 89 (185)
T ss_dssp SEEEEES---SHHHHHHHHHHHHTT-EEEEEE-TTS--------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-
T ss_pred ceEecCCC-cCHHHHHHHHHHHHCCCEEEEEecCccc----cccccceEEEecchhhhhhhhccccCcceeEEEe
Confidence 45566554 4888865 77788889998888544221 11233344444 45666666777888998864
No 159
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=37.70 E-value=2.8e+02 Score=24.22 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=72.8
Q ss_pred cCCcceEEEEeCCCCC-CChHHHHHHHHHHHHHHh---CCCeEEEcCCC-CChHHHHHHHHhh--cCC----eEEEEeCC
Q 032051 11 MSRFKRVCVFCGSSTG-KRNCYRDAALDLGQELVS---KKLDLVYGGGS-VGLMGLVSHVVHR--GGG----HVLGIIPK 79 (148)
Q Consensus 11 ~~~~~~V~V~ggs~~~-~~~~~~~~A~~lG~~lA~---~g~~lv~GGG~-~GlM~a~~~gA~~--~GG----~viGv~p~ 79 (148)
-+|..++.|--..... ++..| -.||..+.+ .+++++.|... -.....=+-||.- .|+ ++.||+|+
T Consensus 178 EnR~~~~~v~v~~~~~~d~~~~----~~LG~~iG~~~~~~IPvi~g~~~~p~~d~lK~lgAA~Atsgs~~m~Hi~GvTPE 253 (400)
T PF04412_consen 178 ENRRATILVEVEAPPEEDDADW----GLLGYLIGKKVGDRIPVITGLERRPSEDDLKALGAAMATSGSVAMFHIVGVTPE 253 (400)
T ss_pred cCCCCeEEEEeCCCCCcCcchH----HHHHHHHHHhcCCCcCeEeCCCCCCCHHHHHHHhhhhhcccceeeEEEeCCCCC
Confidence 4677788777655543 33334 445555544 48999999744 2444444444432 233 77899998
Q ss_pred cccccccCCCCCceeeec--CCHH-HHHHH-HHHcCCE-EEEecCchhhHHHHHHHHHHHHhCC--CCCcEEEe
Q 032051 80 TLMNKEITGETVGEVKPV--ADMH-QRKAE-MARNSDC-FIALPGGYGTLEELLEVITWAQLGI--HDKPVNQL 146 (148)
Q Consensus 80 ~~~~~e~~~~~~~~~~~~--~~~~-~R~~~-~v~~sda-~IvlpGG~GTL~El~~~~~~~~lg~--~~kPv~l~ 146 (148)
.....+..... .+.+.. .++. .++.+ -....+. +|+|+-=-=|++|+.++..+.+-.. .++|+++.
T Consensus 254 a~~~~~a~~~~-~e~i~i~~~dl~~~~~~l~~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~ 326 (400)
T PF04412_consen 254 APTLEAAFGGK-AERITITDADLEEVYEELNTAGDEKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWIT 326 (400)
T ss_pred CCcchhhhcCC-ceEEEeCHHHHHHHHHHhccCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEE
Confidence 64221111111 233322 2332 23333 1222333 6777777789999999887766443 46777664
No 160
>PRK09267 flavodoxin FldA; Validated
Probab=37.64 E-value=45 Score=24.57 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=18.9
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHh
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVS 44 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~ 44 (148)
++|.|+.+|..++.. +.|+++++.|.+
T Consensus 2 mki~IiY~S~tGnT~---~vA~~Ia~~l~~ 28 (169)
T PRK09267 2 AKIGIFFGSDTGNTE---DIAKMIQKKLGK 28 (169)
T ss_pred CeEEEEEECCCChHH---HHHHHHHHHhCC
Confidence 478888888887543 557777777643
No 161
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.35 E-value=1.9e+02 Score=23.88 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=37.8
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCC----------------------------CeEEEcCCCCChHHHHHHH
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKK----------------------------LDLVYGGGSVGLMGLVSHV 65 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g----------------------------~~lv~GGG~~GlM~a~~~g 65 (148)
+++|+|+. +.. +...+.+.++.++|.++| +.++.|| . |-|--+++-
T Consensus 10 ~~~i~ii~--~~~--~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGG-D-GT~L~aa~~ 83 (287)
T PRK14077 10 IKKIGLVT--RPN--VSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGG-D-GTLISLCRK 83 (287)
T ss_pred CCEEEEEe--CCc--HHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECC-C-HHHHHHHHH
Confidence 56799995 332 245677888888775544 3344554 5 776666666
Q ss_pred HhhcCCeEEEEeC
Q 032051 66 VHRGGGHVLGIIP 78 (148)
Q Consensus 66 A~~~GG~viGv~p 78 (148)
+...+-+++||-.
T Consensus 84 ~~~~~~PilGIN~ 96 (287)
T PRK14077 84 AAEYDKFVLGIHA 96 (287)
T ss_pred hcCCCCcEEEEeC
Confidence 6666778888843
No 162
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=37.17 E-value=1.3e+02 Score=25.67 Aligned_cols=83 Identities=20% Similarity=0.207 Sum_probs=52.1
Q ss_pred CCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCceeeecCCHHHHHHHHHHcCCEEEEecCchhhHH
Q 032051 46 KLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLE 125 (148)
Q Consensus 46 g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~ 125 (148)
.+..|+|.| ||=-.+.+=|...|-+|++|.-... ..+...+.-.+.++...-.+....+-+..|++|..-+ .=|++
T Consensus 168 ~~V~I~G~G--GlGh~avQ~Aka~ga~Via~~~~~~-K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~ 243 (339)
T COG1064 168 KWVAVVGAG--GLGHMAVQYAKAMGAEVIAITRSEE-KLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLE 243 (339)
T ss_pred CEEEEECCc--HHHHHHHHHHHHcCCeEEEEeCChH-HHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHH
Confidence 566799987 7777788888889999999954332 1122222223333332222222233334999999999 88888
Q ss_pred HHHHHHH
Q 032051 126 ELLEVIT 132 (148)
Q Consensus 126 El~~~~~ 132 (148)
....++.
T Consensus 244 ~~l~~l~ 250 (339)
T COG1064 244 PSLKALR 250 (339)
T ss_pred HHHHHHh
Confidence 8887774
No 163
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=37.08 E-value=34 Score=29.94 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEcCCC----------CChHHHHHHHHhhcCCeEE
Q 032051 32 RDAALDLGQELVSKKLDLVYGGGS----------VGLMGLVSHVVHRGGGHVL 74 (148)
Q Consensus 32 ~~~A~~lG~~lA~~g~~lv~GGG~----------~GlM~a~~~gA~~~GG~vi 74 (148)
.+-|+.|++.|.++|+.+++||-. .|+-+..++.+++.-+.++
T Consensus 290 v~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~ 342 (413)
T COG0112 290 VKNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITV 342 (413)
T ss_pred HHHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEee
Confidence 356778888888899999998632 2777888888887665444
No 164
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.96 E-value=2.3e+02 Score=23.08 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=36.9
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCC---------CeEEEcCCCCChHHHHHHHHhh--cCCeEEEEe
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKK---------LDLVYGGGSVGLMGLVSHVVHR--GGGHVLGII 77 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g---------~~lv~GGG~~GlM~a~~~gA~~--~GG~viGv~ 77 (148)
+|+|+. +. ++...+.+.++-++|.++| +.++.|| . |-+--+++-+.. .+-+++||-
T Consensus 2 ~i~Ii~--~~--~~~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGG-D-GT~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 2 KVAIIS--NG--DPKSKRVASKLKKYLKDFGFILDEKNPDIVISVGG-D-GTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred EEEEEe--CC--CHHHHHHHHHHHHHHHHcCCccCCcCCCEEEEECC-c-HHHHHHHHHhcccCCCCeEEEEe
Confidence 588883 32 3556678888988887654 4456664 6 777666665554 466777773
No 165
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=36.93 E-value=26 Score=30.12 Aligned_cols=30 Identities=33% Similarity=0.529 Sum_probs=18.8
Q ss_pred eEEEcCCCCChHHHHHHHHhhcCCeEEEEeCC
Q 032051 48 DLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPK 79 (148)
Q Consensus 48 ~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~ 79 (148)
.||.|||+.|++.|++ |.++|-+|+=|=+.
T Consensus 2 VVVvGgG~aG~~AAi~--AAr~G~~VlLiE~~ 31 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIA--AARAGAKVLLIEKG 31 (428)
T ss_dssp EEEE--SHHHHHHHHH--HHHTTS-EEEE-SS
T ss_pred EEEECccHHHHHHHHH--HHHCCCEEEEEECC
Confidence 3788999988887775 44568888877443
No 166
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=36.91 E-value=1e+02 Score=20.01 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=37.5
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEe
Q 032051 17 VCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 17 V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~ 77 (148)
|+|+.-+.. ++.+.+.|.++.+.|-++|+.+..=-.. .=++---+-|...|-+.+-|+
T Consensus 2 v~Ii~~~~~--~~~~~~~a~~l~~~L~~~gi~v~~d~~~-~~~~k~~~~a~~~g~p~~iii 59 (94)
T PF03129_consen 2 VVIIPVGKK--DEEIIEYAQELANKLRKAGIRVELDDSD-KSLGKQIKYADKLGIPFIIII 59 (94)
T ss_dssp EEEEESSCS--HHHHHHHHHHHHHHHHHTTSEEEEESSS-STHHHHHHHHHHTTESEEEEE
T ss_pred EEEEEeCCC--cHHHHHHHHHHHHHHHHCCCEEEEECCC-CchhHHHHHHhhcCCeEEEEE
Confidence 556653332 5678899999999999999876444334 444455555666665555444
No 167
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=36.81 E-value=1.1e+02 Score=24.36 Aligned_cols=41 Identities=17% Similarity=0.011 Sum_probs=31.9
Q ss_pred ccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 10 AMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 10 ~~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
.+.+...|+|||||=++.+.-|...|+..-+.+...++.+|
T Consensus 17 ~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 17 TGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVL 57 (236)
T ss_pred ccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Confidence 34667789999999998888888888888888876665443
No 168
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=36.68 E-value=2.3e+02 Score=22.89 Aligned_cols=69 Identities=9% Similarity=0.120 Sum_probs=43.0
Q ss_pred cceEEEEeCCCCCC---ChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHH--HHHHhhcCCeEEEEeCCcccc
Q 032051 14 FKRVCVFCGSSTGK---RNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLV--SHVVHRGGGHVLGIIPKTLMN 83 (148)
Q Consensus 14 ~~~V~V~ggs~~~~---~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~--~~gA~~~GG~viGv~p~~~~~ 83 (148)
...|.+.|++.... .++..+..+.+.+. +.....|+.|-|....-+++ ++-|.+.|-..+-++|..+.+
T Consensus 36 v~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~-~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~ 109 (292)
T PRK03170 36 TDGLVVVGTTGESPTLTHEEHEELIRAVVEA-VNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNK 109 (292)
T ss_pred CCEEEECCcCCccccCCHHHHHHHHHHHHHH-hCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCC
Confidence 34667776665432 33444444444443 44457888887765676666 467888898888887766543
No 169
>PRK13059 putative lipid kinase; Reviewed
Probab=36.66 E-value=47 Score=27.05 Aligned_cols=33 Identities=27% Similarity=0.628 Sum_probs=21.7
Q ss_pred cCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 110 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 110 ~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
..| .|+.-||=||++|+...+. +.+ .+.|+.++
T Consensus 56 ~~d-~vi~~GGDGTv~evv~gl~--~~~-~~~~lgvi 88 (295)
T PRK13059 56 SYK-YILIAGGDGTVDNVVNAMK--KLN-IDLPIGIL 88 (295)
T ss_pred CCC-EEEEECCccHHHHHHHHHH--hcC-CCCcEEEE
Confidence 345 5667789999999987763 211 24666664
No 170
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=36.55 E-value=57 Score=24.54 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=21.4
Q ss_pred cCCEEEEecCchhhHHHHHHHHHHHH
Q 032051 110 NSDCFIALPGGYGTLEELLEVITWAQ 135 (148)
Q Consensus 110 ~sda~IvlpGG~GTL~El~~~~~~~~ 135 (148)
.+++++|.+++.||++++...+...+
T Consensus 129 ~a~vIlV~~~~~g~i~~~l~~~~~~~ 154 (199)
T PF13500_consen 129 GAPVILVASGRLGTINHTLLTIEALK 154 (199)
T ss_dssp T-EEEEEEESSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 67889999999999999987776655
No 171
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=36.54 E-value=79 Score=24.08 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=27.9
Q ss_pred HHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEecC
Q 032051 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLHV 148 (148)
Q Consensus 105 ~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n~ 148 (148)
..+-...|++|+.|--...+.++.+-+.- .+.||+++|.
T Consensus 50 ~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~-----~gIpvv~~d~ 88 (257)
T PF13407_consen 50 QAISQGVDGIIVSPVDPDSLAPFLEKAKA-----AGIPVVTVDS 88 (257)
T ss_dssp HHHHTTESEEEEESSSTTTTHHHHHHHHH-----TTSEEEEESS
T ss_pred HHHHhcCCEEEecCCCHHHHHHHHHHHhh-----cCceEEEEec
Confidence 34456689999998887666666666542 4689998873
No 172
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=36.28 E-value=93 Score=27.35 Aligned_cols=83 Identities=22% Similarity=0.387 Sum_probs=48.5
Q ss_pred CeEEEcCCCCChHHHHHHHHhh--------------------cCCeEEEEeCCcccccccCCCCCceeeecCCHHHHHHH
Q 032051 47 LDLVYGGGSVGLMGLVSHVVHR--------------------GGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAE 106 (148)
Q Consensus 47 ~~lv~GGG~~GlM~a~~~gA~~--------------------~GG~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~ 106 (148)
+.+.+|-|+ |+.+-..+-+.+ .+|.+.||.-+-+.|.....-.-+.-.+..+|
T Consensus 141 FHiTWGTGP-gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdF------ 213 (552)
T COG3573 141 FHITWGTGP-GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDF------ 213 (552)
T ss_pred eEEeecCCc-chhhHHHHHHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecce------
Confidence 567888888 998887766655 25667777554443321111111111122222
Q ss_pred HHHcCCEEEEecCchhhHHHHHH-HHHHHHhC
Q 032051 107 MARNSDCFIALPGGYGTLEELLE-VITWAQLG 137 (148)
Q Consensus 107 ~v~~sda~IvlpGG~GTL~El~~-~~~~~~lg 137 (148)
--++.++|+-.||+|-=.|+.. .|--..+|
T Consensus 214 -ef~A~aviv~SGGIGGnhelVRrnWP~eRlG 244 (552)
T COG3573 214 -EFSASAVIVASGGIGGNHELVRRNWPTERLG 244 (552)
T ss_pred -EEeeeeEEEecCCcCCCHHHHHhcCchhhcC
Confidence 2368899999999998888753 44334444
No 173
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=35.90 E-value=55 Score=26.38 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=23.8
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
+|+|++|......+.=...++.+-+.|.+.||.++.
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~ 36 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYP 36 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEE
Confidence 356665555433332246889999999999998743
No 174
>PRK07109 short chain dehydrogenase; Provisional
Probab=35.72 E-value=1.6e+02 Score=24.14 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=30.1
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
.++|.|.|+|+ -..+++.+.|+++|+.|+.-+-..--.+...+...+.|+++..+
T Consensus 8 ~k~vlITGas~--------gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v 62 (334)
T PRK07109 8 RQVVVITGASA--------GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAV 62 (334)
T ss_pred CCEEEEECCCC--------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 35788887655 23466777788889987644322111222333333446655544
No 175
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.69 E-value=56 Score=26.85 Aligned_cols=10 Identities=10% Similarity=0.115 Sum_probs=6.6
Q ss_pred cCCEEEEecC
Q 032051 110 NSDCFIALPG 119 (148)
Q Consensus 110 ~sda~IvlpG 119 (148)
.-|.+|--.|
T Consensus 119 ~lDvLVnNAG 128 (299)
T PRK06300 119 HIDILVHSLA 128 (299)
T ss_pred CCcEEEECCC
Confidence 3577777665
No 176
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=35.61 E-value=56 Score=25.60 Aligned_cols=18 Identities=44% Similarity=0.687 Sum_probs=14.2
Q ss_pred EEEecCchhhHHHHHHHHH
Q 032051 114 FIALPGGYGTLEELLEVIT 132 (148)
Q Consensus 114 ~IvlpGG~GTL~El~~~~~ 132 (148)
.|+++|| |+++|+++++-
T Consensus 105 aiFIGGg-~~i~~ile~~~ 122 (187)
T COG2242 105 AIFIGGG-GNIEEILEAAW 122 (187)
T ss_pred EEEECCC-CCHHHHHHHHH
Confidence 4566777 99999999873
No 177
>PRK11096 ansB L-asparaginase II; Provisional
Probab=35.56 E-value=54 Score=27.92 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=27.6
Q ss_pred HcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 109 ~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
+..|.||+.. |.-||+|....+++. ++ .+||||+-
T Consensus 99 ~~~dGiVVtH-GTDTme~tA~~Ls~~-~~-~~kPVVlT 133 (347)
T PRK11096 99 DKTDGFVITH-GTDTMEETAYFLDLT-VK-CDKPVVLV 133 (347)
T ss_pred CCCCEEEEeC-CCchHHHHHHHHHHh-cc-CCCCEEEe
Confidence 4577788776 589999999999875 34 58999984
No 178
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=35.42 E-value=43 Score=22.36 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=17.0
Q ss_pred cCCEEEEecCchhhHHHHHH
Q 032051 110 NSDCFIALPGGYGTLEELLE 129 (148)
Q Consensus 110 ~sda~IvlpGG~GTL~El~~ 129 (148)
.+...|=++||+=||+|++.
T Consensus 45 ~~~VMVRVGGGW~tL~~fL~ 64 (73)
T smart00243 45 RSTVMVRVGGGWETLDEYLL 64 (73)
T ss_pred CCeEEEEECCcHHHHHHHHH
Confidence 46778889999999999964
No 179
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=35.38 E-value=43 Score=27.80 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhh
Q 032051 36 LDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHR 68 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~ 68 (148)
.+|+++|..+.+.|+.+|| |.=+.++-|+++
T Consensus 5 ~rl~r~l~~~~~gLvL~GG--G~RG~ahiGvL~ 35 (306)
T cd07225 5 SRLARVLTGNSIALVLGGG--GARGCAHIGVIK 35 (306)
T ss_pred HHHHHHhcCCCEEEEECCh--HHHHHHHHHHHH
Confidence 5688999999899877764 666666666654
No 180
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=35.37 E-value=90 Score=25.18 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=24.6
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
+|+|.+|-....++.=...++++.+.|.+.||.+
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~ 35 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEV 35 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeE
Confidence 4666655554445544689999999999999986
No 181
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=35.29 E-value=96 Score=24.67 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=23.9
Q ss_pred hccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 9 KAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 9 ~~~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
+-+.|+++|.+++||... .+.-...++.+.+.+.+.|+.+
T Consensus 21 ~~~~~~~kI~~I~GSlR~-~S~n~~la~~~~~~~~~~g~~v 60 (219)
T TIGR02690 21 THKPHIPRILLLYGSLRE-RSYSRLLAEEAARLLGCEGRET 60 (219)
T ss_pred CCCCCCCEEEEEECCCCC-cchHHHHHHHHHHHHhhcCCEE
Confidence 445666777777776643 3334456666666665556654
No 182
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=35.09 E-value=40 Score=25.16 Aligned_cols=49 Identities=18% Similarity=0.400 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhh---cCCe---EEEEeCCcc
Q 032051 29 NCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHR---GGGH---VLGIIPKTL 81 (148)
Q Consensus 29 ~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~---~GG~---viGv~p~~~ 81 (148)
+.+.+.|++|+..|+. .+.|+||. +++.+++.-... .+.+ ..+++|+..
T Consensus 2 e~~~n~Ak~LA~~L~~-~~Pvi~~~---~~~~~vA~R~k~qlnEnAK~~A~~~~lPE~~ 56 (155)
T PF10432_consen 2 ESFVNPAKRLALELAG-RIPVIYGS---PLYAAVARRWKQQLNENAKYPAFAAVLPEAN 56 (155)
T ss_dssp --GHHHHHHHHHHHTT-SEEEEEEC---GCGCHHHHHHHHHHHHTT----EEEEETCHH
T ss_pred ccccCHHHHHHHHHcC-CCcEEEEC---ccchHHHHHHHHHHHHHhCCccchhcchhhh
Confidence 3567889999999977 68899986 567777655543 3333 356677653
No 183
>PRK14557 pyrH uridylate kinase; Provisional
Probab=34.92 E-value=75 Score=25.57 Aligned_cols=43 Identities=21% Similarity=0.472 Sum_probs=22.4
Q ss_pred CCcceEEE-EeCCCCCCCh---HHHHHHHHHHHHHH---hCCC--eEEEcCC
Q 032051 12 SRFKRVCV-FCGSSTGKRN---CYRDAALDLGQELV---SKKL--DLVYGGG 54 (148)
Q Consensus 12 ~~~~~V~V-~ggs~~~~~~---~~~~~A~~lG~~lA---~~g~--~lv~GGG 54 (148)
++.++|.+ |||+....+. ...+..+++.+.|+ +.|+ .|+.|||
T Consensus 2 ~~~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgG 53 (247)
T PRK14557 2 RPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGG 53 (247)
T ss_pred CcccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCc
Confidence 33445544 7888765421 01234455555554 4554 4678875
No 184
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.88 E-value=48 Score=27.19 Aligned_cols=34 Identities=12% Similarity=0.045 Sum_probs=25.1
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
++|+|+. +.+ ++.-.+.+.++.++|.++|+.+..
T Consensus 1 m~v~iv~--~~~-k~~~~~~~~~I~~~L~~~g~~v~v 34 (277)
T PRK03708 1 MRFGIVA--RRD-KEEALKLAYRVYDFLKVSGYEVVV 34 (277)
T ss_pred CEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEE
Confidence 3688884 332 345667889999999999998765
No 185
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=34.74 E-value=1.1e+02 Score=25.20 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.0
Q ss_pred CCEEEEecCchhhHHHHHHHHH
Q 032051 111 SDCFIALPGGYGTLEELLEVIT 132 (148)
Q Consensus 111 sda~IvlpGG~GTL~El~~~~~ 132 (148)
..-.|+..||=||++|+...+.
T Consensus 58 ~~D~via~GGDGTv~evingl~ 79 (301)
T COG1597 58 GYDTVIAAGGDGTVNEVANGLA 79 (301)
T ss_pred CCCEEEEecCcchHHHHHHHHh
Confidence 3446677789999999988874
No 186
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.69 E-value=1e+02 Score=23.74 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=21.3
Q ss_pred HHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 106 ~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
+.-...|++|+.+.....+.++...+. ..++|++++|
T Consensus 51 ~~~~~~Dgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~ 87 (282)
T cd06318 51 LLTRGVNVLIINPVDPEGLVPAVAAAK-----AAGVPVVVVD 87 (282)
T ss_pred HHHcCCCEEEEecCCccchHHHHHHHH-----HCCCCEEEec
Confidence 344568888887654443334332221 2467888876
No 187
>PRK06924 short chain dehydrogenase; Provisional
Probab=34.47 E-value=83 Score=23.98 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=0.0
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
|++|.|.|+++ -..+.+++.|+++|+.|+.
T Consensus 1 ~k~vlItGasg--------giG~~ia~~l~~~g~~V~~ 30 (251)
T PRK06924 1 MRYVIITGTSQ--------GLGEAIANQLLEKGTHVIS 30 (251)
T ss_pred CcEEEEecCCc--------hHHHHHHHHHHhcCCEEEE
No 188
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=34.45 E-value=80 Score=26.23 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=27.4
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
++|+|++|-.....+.=...|+.+.+.|.+.+|.++
T Consensus 4 ~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~ 39 (343)
T PRK14568 4 IKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPF 39 (343)
T ss_pred cEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEE
Confidence 467777776655555556888999999988899875
No 189
>PLN02271 serine hydroxymethyltransferase
Probab=34.41 E-value=45 Score=30.60 Aligned_cols=42 Identities=31% Similarity=0.331 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCC----------CChHHHHHHHHhhcCCeEE
Q 032051 33 DAALDLGQELVSKKLDLVYGGGS----------VGLMGLVSHVVHRGGGHVL 74 (148)
Q Consensus 33 ~~A~~lG~~lA~~g~~lv~GGG~----------~GlM~a~~~gA~~~GG~vi 74 (148)
+-|+.|++.|.++|+.|++||-. .|+.+..+.-.++.-+.++
T Consensus 442 ~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~ 493 (586)
T PLN02271 442 KNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITL 493 (586)
T ss_pred HHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEe
Confidence 45677788888899999998732 3677777777777655444
No 190
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=34.20 E-value=73 Score=24.43 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=21.7
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHH
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQEL 42 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~l 42 (148)
+++|++||||=++.+--|...++++-+.+
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~ 31 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERL 31 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHHHc
Confidence 45799999999887777777777665443
No 191
>PRK04155 chaperone protein HchA; Provisional
Probab=34.12 E-value=42 Score=27.78 Aligned_cols=33 Identities=30% Similarity=0.289 Sum_probs=20.1
Q ss_pred EEEecCchhhHHHHHHHHHHHHh----CCCCCcEEEe
Q 032051 114 FIALPGGYGTLEELLEVITWAQL----GIHDKPVNQL 146 (148)
Q Consensus 114 ~IvlpGG~GTL~El~~~~~~~~l----g~~~kPv~l~ 146 (148)
.|++|||.|.+..|.+--.+.++ ...+|||..+
T Consensus 150 aV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAI 186 (287)
T PRK04155 150 AVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITL 186 (287)
T ss_pred EEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEE
Confidence 67899999987765332222221 1357888654
No 192
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=34.06 E-value=27 Score=28.52 Aligned_cols=92 Identities=11% Similarity=0.166 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCceeeecCCHHHHHHHHHHcCCEEE
Q 032051 36 LDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFI 115 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~~v~~sda~I 115 (148)
.+-.+.|.+.||.|.- |.-=.-.+++--.+.|-.++ .|-. .++..=.=..+ ..--+++.+.+|.=|
T Consensus 113 l~Aae~Lv~eGF~VlP---Y~~~D~v~akrL~d~Gcaav--MPlg--------sPIGSg~Gi~n-~~~l~~i~~~~~vPv 178 (247)
T PF05690_consen 113 LKAAEILVKEGFVVLP---YCTDDPVLAKRLEDAGCAAV--MPLG--------SPIGSGRGIQN-PYNLRIIIERADVPV 178 (247)
T ss_dssp HHHHHHHHHTT-EEEE---EE-S-HHHHHHHHHTT-SEB--EEBS--------SSTTT---SST-HHHHHHHHHHGSSSB
T ss_pred HHHHHHHHHCCCEEee---cCCCCHHHHHHHHHCCCCEE--Eecc--------cccccCcCCCC-HHHHHHHHHhcCCcE
Confidence 3445566777777642 22334455666666665432 2211 11110000011 233566778889999
Q ss_pred EecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 116 ALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 116 vlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
++-+|+||.++..+++.+ +---+++|
T Consensus 179 IvDAGiG~pSdaa~AMEl------G~daVLvN 204 (247)
T PF05690_consen 179 IVDAGIGTPSDAAQAMEL------GADAVLVN 204 (247)
T ss_dssp EEES---SHHHHHHHHHT------T-SEEEES
T ss_pred EEeCCCCCHHHHHHHHHc------CCceeehh
Confidence 999999999999999864 44445555
No 193
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=34.05 E-value=1.9e+02 Score=21.16 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=37.0
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCC---C-CChHHHHHHHHhhcCCeEEE
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGG---S-VGLMGLVSHVVHRGGGHVLG 75 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG---~-~GlM~a~~~gA~~~GG~viG 75 (148)
+++|.++|-...+.. ..|+.+.+.+++.++.+-+.|- . .++-.-+.+-..+.|=..-+
T Consensus 2 ~~kVLFVC~gN~cRS----pmAE~l~~~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~~ 63 (139)
T COG0394 2 MMKVLFVCTGNICRS----PMAEALLRHLAPDNVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDISG 63 (139)
T ss_pred CceEEEEcCCCcccC----HHHHHHHHHhccCCeEEECCccCCCCCCCCCHHHHHHHHHcCCCcCC
Confidence 578999997776654 4788888888888888776651 1 23444455544454443333
No 194
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=33.88 E-value=35 Score=27.95 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCeEEEcCCCCChHHHHHHHHhh
Q 032051 37 DLGQELVSKKLDLVYGGGSVGLMGLVSHVVHR 68 (148)
Q Consensus 37 ~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~ 68 (148)
+|+|.|+.+.+.||.+|| |.=++++-|+++
T Consensus 1 rlar~l~g~~igLVL~GG--GaRG~ahiGVL~ 30 (269)
T cd07227 1 RLARRLCGQAIGLVLGGG--GARGISHIGILQ 30 (269)
T ss_pred ChhhHhcCCCEEEEECCc--HHHHHHHHHHHH
Confidence 378888888888877764 666666666654
No 195
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=33.88 E-value=1.4e+02 Score=21.43 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=27.7
Q ss_pred HHHHHHHH--HHhCCCeE-EEcCCCCChHHHHHHHHhhcCCeEEEEe
Q 032051 34 AALDLGQE--LVSKKLDL-VYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 34 ~A~~lG~~--lA~~g~~l-v~GGG~~GlM~a~~~gA~~~GG~viGv~ 77 (148)
.++++-+. +...+.-+ ++..|.....=.+++-|++.|-+||+++
T Consensus 91 ~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 91 FARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 34555444 44445543 6777777777788888999999999985
No 196
>PRK00208 thiG thiazole synthase; Reviewed
Probab=33.48 E-value=2.7e+02 Score=22.84 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=57.5
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE-EcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCce
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV-YGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGE 93 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv-~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~ 93 (148)
-++=|.+......++ - ....+-.+.|.+.|+.++ |-. . -+..+ +...+.|-..+ .| .=.+.. .+ .
T Consensus 94 iKlEVi~d~~~llpd-~-~~tv~aa~~L~~~Gf~vlpyc~-~-d~~~a--k~l~~~G~~~v--mP-lg~pIG--sg-~-- 159 (250)
T PRK00208 94 IKLEVIGDDKTLLPD-P-IETLKAAEILVKEGFVVLPYCT-D-DPVLA--KRLEEAGCAAV--MP-LGAPIG--SG-L-- 159 (250)
T ss_pred EEEEEecCCCCCCcC-H-HHHHHHHHHHHHCCCEEEEEeC-C-CHHHH--HHHHHcCCCEe--CC-CCcCCC--CC-C--
Confidence 456677655533222 1 344555667778888887 653 3 33333 33334455544 22 101111 11 0
Q ss_pred eeecCCHHHHHHHHHHcCCEEEEecCchhhHHHHHHHHH
Q 032051 94 VKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVIT 132 (148)
Q Consensus 94 ~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~ 132 (148)
-..+ .+..+.+.+..+.-|+..||++|.++...++.
T Consensus 160 --gi~~-~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame 195 (250)
T PRK00208 160 --GLLN-PYNLRIIIEQADVPVIVDAGIGTPSDAAQAME 195 (250)
T ss_pred --CCCC-HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH
Confidence 1112 44466777777899999999999999999885
No 197
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=33.44 E-value=58 Score=27.17 Aligned_cols=35 Identities=31% Similarity=0.319 Sum_probs=27.1
Q ss_pred cCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 110 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 110 ~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
..|+||+.. |.-||+|-..++++ .+...+||||+-
T Consensus 77 ~~dG~VVtH-GTDTmeeTA~~Ls~-~l~~l~kPVVlT 111 (323)
T smart00870 77 GYDGVVVTH-GTDTLEETAYFLSL-TLDSLDKPVVLT 111 (323)
T ss_pred CCCEEEEec-CCccHHHHHHHHHH-HhhcCCCCEEEE
Confidence 568888886 57999999998876 333348999984
No 198
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=33.41 E-value=1.3e+02 Score=25.44 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=14.4
Q ss_pred eeeecCCHHHHHHHHHHcCCEEEEecC
Q 032051 93 EVKPVADMHQRKAEMARNSDCFIALPG 119 (148)
Q Consensus 93 ~~~~~~~~~~R~~~~v~~sda~IvlpG 119 (148)
+-++-+|+..-+-.-.-.||.+|+|-.
T Consensus 208 eAVIDKDlasalLA~~i~AD~liILTd 234 (312)
T COG0549 208 EAVIDKDLASALLAEQIDADLLIILTD 234 (312)
T ss_pred eEEEccHHHHHHHHHHhcCCEEEEEec
Confidence 445556664333333335777777753
No 199
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=33.28 E-value=1.5e+02 Score=24.00 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=27.2
Q ss_pred hhccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHh--CCCeEEEcCCC
Q 032051 8 AKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVS--KKLDLVYGGGS 55 (148)
Q Consensus 8 ~~~~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~--~g~~lv~GGG~ 55 (148)
+++....+.|-|....+..+.+++++.-+.|++.|.+ +++.||-.|+.
T Consensus 125 l~p~~~ipvV~vs~~~~~~~~~~~~~lG~al~~~l~~~~~rv~iIgSG~l 174 (268)
T cd07371 125 MRPGTDIPPVVISANNLYLSGEETEGEMDLAGKATRDAGKRVAVLGSGGL 174 (268)
T ss_pred hcCCCCCCeEEEEecCcCCCHHHHHHHHHHHHHHHHHcCCcEEEEEecCc
Confidence 4455566777777544422334566666666666666 45666644434
No 200
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=32.93 E-value=1.3e+02 Score=28.29 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHH------H---------hCCCe-EEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 28 RNCYRDAALDLGQEL------V---------SKKLD-LVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 28 ~~~~~~~A~~lG~~l------A---------~~g~~-lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
.+.||+.|.++|..- - +.++. |=.++.|+|+|..+++-. -.|+.+|||
T Consensus 12 ~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~-pv~slivGv 75 (780)
T KOG1098|consen 12 LDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSM-PVGSLIVGV 75 (780)
T ss_pred chHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhC-CCCceEEEe
Confidence 467999999998431 1 12333 445677999999988854 489999999
No 201
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=32.86 E-value=1.5e+02 Score=25.98 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=37.7
Q ss_pred eEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCceeeecCCHHHHHHHHHHcCCEEEEecCchhhHH-H
Q 032051 48 DLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLE-E 126 (148)
Q Consensus 48 ~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~-E 126 (148)
.+|.|.|. +=..+++-+...|.+|+.+-.+.....+.....+ + +.++. -.++.+|.+|...|-..+++ +
T Consensus 215 VlViG~G~--IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~---v~~l~----eal~~aDVVI~aTG~~~vI~~~ 284 (425)
T PRK05476 215 VVVAGYGD--VGKGCAQRLRGLGARVIVTEVDPICALQAAMDGF-R---VMTME----EAAELGDIFVTATGNKDVITAE 284 (425)
T ss_pred EEEECCCH--HHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC-E---ecCHH----HHHhCCCEEEECCCCHHHHHHH
Confidence 45777654 3345666677778887776322211111101111 1 12332 23468999988877666665 3
Q ss_pred HHHH
Q 032051 127 LLEV 130 (148)
Q Consensus 127 l~~~ 130 (148)
.+..
T Consensus 285 ~~~~ 288 (425)
T PRK05476 285 HMEA 288 (425)
T ss_pred HHhc
Confidence 4433
No 202
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=32.82 E-value=69 Score=27.69 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=27.0
Q ss_pred HcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 109 ~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
++.|.+|++.| .-||+|....++++ +... |||++.
T Consensus 120 ~~~~G~VV~HG-TDTLe~tAffls~~-~~t~-KPIVit 154 (368)
T KOG0503|consen 120 KSYDGIVVTHG-TDTLEETAFFLSFT-INTL-KPIVIT 154 (368)
T ss_pred cccCcEEEEcC-cchHHHHHHHHHHH-HhcC-CcEEEe
Confidence 44889998875 78999999988763 3333 999985
No 203
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=32.78 E-value=3.1e+02 Score=23.98 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhC---------CCeEEEcCC---CCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCceeeecCCH
Q 032051 33 DAALDLGQELVSK---------KLDLVYGGG---SVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADM 100 (148)
Q Consensus 33 ~~A~~lG~~lA~~---------g~~lv~GGG---~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~~~~~~~ 100 (148)
+.|+..++.+|+. +.-++||.- ..=++.|++..+...|.+++-+....+.. .+.+.+....+
T Consensus 120 ~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~------~~~~~l~~~~~ 193 (445)
T PRK12422 120 DLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE------HLVSAIRSGEM 193 (445)
T ss_pred HHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH------HHHHHHhcchH
Confidence 3455566666541 234677752 22278888888877777776654322210 11111111122
Q ss_pred HHHHHHHHHcCCEEEE-----ecCchhhHHHHHHHHHHHHhCCCCCcEEE
Q 032051 101 HQRKAEMARNSDCFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVNQ 145 (148)
Q Consensus 101 ~~R~~~~v~~sda~Iv-----lpGG~GTL~El~~~~~~~~lg~~~kPv~l 145 (148)
++-+...+..|.+++ +.|--.|.+|++..+.... ..+|++++
T Consensus 194 -~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIl 240 (445)
T PRK12422 194 -QRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVI 240 (445)
T ss_pred -HHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEE
Confidence 122223456776654 3555668889887765333 23577766
No 204
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=32.57 E-value=3e+02 Score=23.06 Aligned_cols=44 Identities=18% Similarity=0.022 Sum_probs=26.7
Q ss_pred eeeecCCHHHHHHHHHHcCCEEEEec---CchhhHHHHHHHHHHHHhCCCCCcEEE
Q 032051 93 EVKPVADMHQRKAEMARNSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVNQ 145 (148)
Q Consensus 93 ~~~~~~~~~~R~~~~v~~sda~Ivlp---GG~GTL~El~~~~~~~~lg~~~kPv~l 145 (148)
+++..+++. .-..+...||.+++.| .+.|.- +.|++.+ ++||+.
T Consensus 303 ~v~l~~~~~-el~~~y~~aDi~~v~~S~~e~~g~~--~lEAma~------G~PVI~ 349 (425)
T PRK05749 303 DVLLGDTMG-ELGLLYAIADIAFVGGSLVKRGGHN--PLEPAAF------GVPVIS 349 (425)
T ss_pred cEEEEecHH-HHHHHHHhCCEEEECCCcCCCCCCC--HHHHHHh------CCCEEE
Confidence 455555554 3446679999977742 122322 5666653 899986
No 205
>PRK05569 flavodoxin; Provisional
Probab=32.49 E-value=75 Score=22.44 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=20.0
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
.+|.|+..|..++. .+.|+++.+.+.+.|..+
T Consensus 2 ~ki~iiY~S~tGnT---~~iA~~i~~~~~~~g~~v 33 (141)
T PRK05569 2 KKVSIIYWSCGGNV---EVLANTIADGAKEAGAEV 33 (141)
T ss_pred CeEEEEEECCCCHH---HHHHHHHHHHHHhCCCeE
Confidence 35555555666543 367788888887777543
No 206
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=32.22 E-value=1.1e+02 Score=24.24 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=34.3
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE------------------------EEcCCCCChHHHHHHHHhhc
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL------------------------VYGGGSVGLMGLVSHVVHRG 69 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l------------------------v~GGG~~GlM~a~~~gA~~~ 69 (148)
..+|-|+|--+.+ + .++.++..|+.-|.+. ++|.|..--.-.+..-+++.
T Consensus 39 ~gkv~V~G~GkSG----~--Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~ 112 (202)
T COG0794 39 KGKVFVTGVGKSG----L--IGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRL 112 (202)
T ss_pred CCcEEEEcCChhH----H--HHHHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHc
Confidence 4568888644432 3 5677777777655543 34444545555555666666
Q ss_pred CCeEEEEe
Q 032051 70 GGHVLGII 77 (148)
Q Consensus 70 GG~viGv~ 77 (148)
|.++|+|+
T Consensus 113 g~~liaiT 120 (202)
T COG0794 113 GAKLIAIT 120 (202)
T ss_pred CCcEEEEe
Confidence 66666664
No 207
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=32.13 E-value=32 Score=30.48 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.6
Q ss_pred hCCCeEEEcCCCCC---hHHHHHHHHhhc
Q 032051 44 SKKLDLVYGGGSVG---LMGLVSHVVHRG 69 (148)
Q Consensus 44 ~~g~~lv~GGG~~G---lM~a~~~gA~~~ 69 (148)
.+|+++|+|||+.| |.+|+.+|..++
T Consensus 243 p~GvTlIvGGGyHGKSTLL~Ale~GVYnH 271 (448)
T PF09818_consen 243 PKGVTLIVGGGYHGKSTLLEALERGVYNH 271 (448)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhcccCC
Confidence 47999999999988 889999998774
No 208
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=32.06 E-value=1.1e+02 Score=23.53 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=17.5
Q ss_pred ChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 28 RNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 28 ~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
++.+.+..+.+-+.+.++|+.+++.
T Consensus 11 ~~~~~~~~~~~~~~a~~~g~~~~~~ 35 (273)
T cd06309 11 SPWRTAETKSIKDAAEKRGFDLKFA 35 (273)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEe
Confidence 4555667777777777788887654
No 209
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=31.99 E-value=1.6e+02 Score=22.66 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=49.2
Q ss_pred HHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcc--ccc--ccCCCCCce--ee---ecCCHHHHHHHHHH
Q 032051 39 GQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTL--MNK--EITGETVGE--VK---PVADMHQRKAEMAR 109 (148)
Q Consensus 39 G~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~--~~~--e~~~~~~~~--~~---~~~~~~~R~~~~v~ 109 (148)
-+.+...+..|.|||| =+|..-++.++...|.||=+--+.. ..+ .....|+.. -. +..-|.+|+.+.-+
T Consensus 66 ~~l~~~~~~ViaTGGG--~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e 143 (172)
T COG0703 66 KELLEEDNAVIATGGG--AVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYRE 143 (172)
T ss_pred HHHhhcCCeEEECCCc--cccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHH
Confidence 3444444677788876 4777888888888887776522110 000 001112211 11 22345788888777
Q ss_pred cCCEEEEecCch-hhHHHHHHHH
Q 032051 110 NSDCFIALPGGY-GTLEELLEVI 131 (148)
Q Consensus 110 ~sda~IvlpGG~-GTL~El~~~~ 131 (148)
.||.++--.... =..+|+.+.+
T Consensus 144 ~a~~~~~~~~~~~~v~~~i~~~l 166 (172)
T COG0703 144 VADFIIDTDDRSEEVVEEILEAL 166 (172)
T ss_pred hCcEEecCCCCcHHHHHHHHHHH
Confidence 777666555544 3445555444
No 210
>PRK08339 short chain dehydrogenase; Provisional
Probab=31.98 E-value=85 Score=24.58 Aligned_cols=10 Identities=40% Similarity=0.697 Sum_probs=6.1
Q ss_pred CCEEEEecCc
Q 032051 111 SDCFIALPGG 120 (148)
Q Consensus 111 sda~IvlpGG 120 (148)
-|.+|...|.
T Consensus 86 iD~lv~nag~ 95 (263)
T PRK08339 86 PDIFFFSTGG 95 (263)
T ss_pred CcEEEECCCC
Confidence 5666666554
No 211
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.97 E-value=1.8e+02 Score=29.50 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=38.9
Q ss_pred ceEEEEeCCCCCC-ChHHHHHHHH-HHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcC
Q 032051 15 KRVCVFCGSSTGK-RNCYRDAALD-LGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGG 70 (148)
Q Consensus 15 ~~V~V~ggs~~~~-~~~~~~~A~~-lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~G 70 (148)
-.|.|-||...-. .|.+.+.-++ |-+..-.-|-=++|||-..|+|+-+.+++.+++
T Consensus 119 LvISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~Al~dh~ 176 (1381)
T KOG3614|consen 119 LVISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSALRDHS 176 (1381)
T ss_pred EEEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHHHHhcc
Confidence 4689999877543 4445433333 333322358889999999999999999999863
No 212
>PF02187 GAS2: Growth-Arrest-Specific Protein 2 Domain; InterPro: IPR003108 The growth-arrest-specific protein 2 domain is found associated with the spectrin repeat, calponin homology domain and EF hand in many proteins. It is found among others in the growth arrest-specific protein 2 [].; GO: 0007050 cell cycle arrest; PDB: 1V5R_A.
Probab=31.84 E-value=29 Score=23.12 Aligned_cols=21 Identities=38% Similarity=0.688 Sum_probs=17.2
Q ss_pred cCCEEEEecCchhhHHHHHHH
Q 032051 110 NSDCFIALPGGYGTLEELLEV 130 (148)
Q Consensus 110 ~sda~IvlpGG~GTL~El~~~ 130 (148)
.+.+.|=++||+-||+|+..-
T Consensus 45 ~~~vMVRVGGGW~tL~~~L~k 65 (73)
T PF02187_consen 45 RSHVMVRVGGGWDTLEEYLDK 65 (73)
T ss_dssp TTEEEEEETTEEEEHHHHHHH
T ss_pred CCEEEEEeCCcHHHHHHHhhc
Confidence 356778899999999999754
No 213
>PRK06756 flavodoxin; Provisional
Probab=31.68 E-value=1.4e+02 Score=21.28 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=6.1
Q ss_pred HHHHhhcCCeEEE
Q 032051 63 SHVVHRGGGHVLG 75 (148)
Q Consensus 63 ~~gA~~~GG~viG 75 (148)
.+-..+.|.++++
T Consensus 107 ~~~l~~~g~~~v~ 119 (148)
T PRK06756 107 IEKLQERGAAVVL 119 (148)
T ss_pred HHHHHHCCCEEcC
Confidence 3333445655554
No 214
>PRK07035 short chain dehydrogenase; Provisional
Probab=31.57 E-value=84 Score=24.02 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=16.5
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
++|.|.|+++ -....+.+.|+++|+.|+.
T Consensus 9 k~vlItGas~--------gIG~~l~~~l~~~G~~Vi~ 37 (252)
T PRK07035 9 KIALVTGASR--------GIGEAIAKLLAQQGAHVIV 37 (252)
T ss_pred CEEEEECCCc--------HHHHHHHHHHHHCCCEEEE
Confidence 4566666544 2335566666667777653
No 215
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=31.49 E-value=1.4e+02 Score=26.08 Aligned_cols=60 Identities=20% Similarity=0.081 Sum_probs=39.2
Q ss_pred hchHHhhccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHH
Q 032051 3 ENKAAAKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSH 64 (148)
Q Consensus 3 ~~~~~~~~~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~ 64 (148)
.||+-++..+|.++..+-.+....+ -+|.+..++.++-|.+....++||++. =.-||..-
T Consensus 38 akF~~~~~~~R~~~p~ik~~g~~k~-v~~deAie~Aa~ILv~aKrPllyg~s~-tscEA~~~ 97 (429)
T COG1029 38 AKFKEAFSDHRIKAPMIKDDGELKP-VDYDEAIEKAAEILVNAKRPLLYGWSS-TSCEAQEL 97 (429)
T ss_pred HHHhhhcccccccCceEecCCceee-ccHHHHHHHHHHHHHhccCceEecccc-chHHHHHH
Confidence 4666676788877777766554432 236566677777788888888888755 44444433
No 216
>PRK12361 hypothetical protein; Provisional
Probab=31.38 E-value=1.2e+02 Score=27.08 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=20.6
Q ss_pred EEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 114 FIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 114 ~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
.|+.-||=||++|+...+. .++.|+.++
T Consensus 300 ~Viv~GGDGTl~ev~~~l~-----~~~~~lgii 327 (547)
T PRK12361 300 IVIACGGDGTVTEVASELV-----NTDITLGII 327 (547)
T ss_pred EEEEECCCcHHHHHHHHHh-----cCCCCEEEe
Confidence 5667899999999998773 135666654
No 217
>PRK14072 6-phosphofructokinase; Provisional
Probab=31.36 E-value=2e+02 Score=25.07 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=34.1
Q ss_pred EEEEeCCCCCC-----ChHHHHHHHHHHHHHHhCCCe-EEEcCCCCChHHHHHH---HHhhcC--CeEEEE
Q 032051 17 VCVFCGSSTGK-----RNCYRDAALDLGQELVSKKLD-LVYGGGSVGLMGLVSH---VVHRGG--GHVLGI 76 (148)
Q Consensus 17 V~V~ggs~~~~-----~~~~~~~A~~lG~~lA~~g~~-lv~GGG~~GlM~a~~~---gA~~~G--G~viGv 76 (148)
=++.|+||... +++.+ .++.+.|.+.++. |++=||. |-|..+.+ -+.+.| -.+|||
T Consensus 72 Gt~LgssR~~~~~~~~~~~~~---~~~~~~l~~~~Id~LivIGGd-gS~~~a~~L~e~~~~~g~~i~vIgI 138 (416)
T PRK14072 72 SGALGSCRYKLKSLEEDRAEY---ERLLEVFKAHDIGYFFYNGGN-DSMDTALKVSQLAKKMGYPIRCIGI 138 (416)
T ss_pred CeEeccCCCCCcccccChHHH---HHHHHHHHHcCCCEEEEECCh-HHHHHHHHHHHHHHHhCCCceEEEe
Confidence 35788888653 23333 4455666677665 3444457 88888765 333355 588888
No 218
>PRK13059 putative lipid kinase; Reviewed
Probab=31.16 E-value=1.1e+02 Score=24.96 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=24.5
Q ss_pred HhCCC-eEEEcCCCCChHHHHHHHHhhcC-CeEEEEeCC
Q 032051 43 VSKKL-DLVYGGGSVGLMGLVSHVVHRGG-GHVLGIIPK 79 (148)
Q Consensus 43 A~~g~-~lv~GGG~~GlM~a~~~gA~~~G-G~viGv~p~ 79 (148)
++.++ .|+.-||. |--..++.|..+.+ ...+||+|.
T Consensus 53 ~~~~~d~vi~~GGD-GTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 53 IDESYKYILIAGGD-GTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred hhcCCCEEEEECCc-cHHHHHHHHHHhcCCCCcEEEECC
Confidence 34443 23344456 99999999998765 466999994
No 219
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=31.16 E-value=2.5e+02 Score=21.67 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCCCChHH--HHHHHHHHHHHHhCCCe---EEEcCCC
Q 032051 15 KRVCVFCGSSTGKRNCY--RDAALDLGQELVSKKLD---LVYGGGS 55 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~--~~~A~~lG~~lA~~g~~---lv~GGG~ 55 (148)
+.+=|-+|+.. - +.. .-.+.++-+.|-++|++ +=.|-|+
T Consensus 4 ~~vFVTVGtT~-F-d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~ 47 (170)
T KOG3349|consen 4 MTVFVTVGTTS-F-DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ 47 (170)
T ss_pred eEEEEEecccc-H-HHHHHHHcCHHHHHHHHHcCccEEEEEecCCc
Confidence 44555555553 1 222 33456667788888876 3456654
No 220
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=31.10 E-value=3e+02 Score=22.60 Aligned_cols=71 Identities=18% Similarity=0.390 Sum_probs=40.1
Q ss_pred HHHHhCCCeEEE---cCCC-CChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCceeeecCCHHHHHHHHHHcCCEEE
Q 032051 40 QELVSKKLDLVY---GGGS-VGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFI 115 (148)
Q Consensus 40 ~~lA~~g~~lv~---GGG~-~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~~v~~sda~I 115 (148)
+.|-..+..+++ |||. .|.--.+++-+.+.|-.+++|.+..+. .|. .....+-...-..|.+.+|.+|
T Consensus 80 ~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~-~Eg-------~~~~~nA~~~l~~L~~~~d~~i 151 (304)
T cd02201 80 EALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS-FEG-------KKRMRQAEEGLEELRKHVDTLI 151 (304)
T ss_pred HHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccc-------hhHHHHHHHHHHHHHHhCCEEE
Confidence 334335655555 5544 355555677788888888888653221 111 1111122344555678899999
Q ss_pred Eec
Q 032051 116 ALP 118 (148)
Q Consensus 116 vlp 118 (148)
+++
T Consensus 152 vid 154 (304)
T cd02201 152 VIP 154 (304)
T ss_pred EEe
Confidence 887
No 221
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=31.02 E-value=2.5e+02 Score=23.58 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=34.2
Q ss_pred eEEEEeCCCCCC--ChHHHHHHHHHHHHHHhCCCe-EEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 16 RVCVFCGSSTGK--RNCYRDAALDLGQELVSKKLD-LVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 16 ~V~V~ggs~~~~--~~~~~~~A~~lG~~lA~~g~~-lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
-=+++++||... +++.+ ++..+.|-++++. |++=||. |-|..+.+ -.+.|-.+|||
T Consensus 63 gGt~LgtsR~~~~~~~~~~---~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~-L~e~~i~vigi 121 (317)
T cd00763 63 GGTFLGSARFPEFKDEEGQ---AKAIEQLKKHGIDALVVIGGD-GSYMGAMR-LTEHGFPCVGL 121 (317)
T ss_pred CCeeeccCCCCccCCHHHH---HHHHHHHHHcCCCEEEEECCc-hHHHHHHH-HHHcCCCEEEe
Confidence 346788887533 22233 4555667677665 3334457 88888876 33357788888
No 222
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=30.97 E-value=1.1e+02 Score=23.68 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=18.8
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
.+++|.|+|+++ ...+.+.+.|.++|+.|+
T Consensus 16 ~~~~ilItGasG--------~iG~~l~~~L~~~g~~V~ 45 (251)
T PLN00141 16 KTKTVFVAGATG--------RTGKRIVEQLLAKGFAVK 45 (251)
T ss_pred cCCeEEEECCCc--------HHHHHHHHHHHhCCCEEE
Confidence 456788887655 234556666666777764
No 223
>PRK08177 short chain dehydrogenase; Provisional
Probab=30.71 E-value=1.1e+02 Score=23.15 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=18.7
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
++|.|.|+++ -....+.+.|+++|+.|+.
T Consensus 2 k~vlItG~sg--------~iG~~la~~l~~~G~~V~~ 30 (225)
T PRK08177 2 RTALIIGASR--------GLGLGLVDRLLERGWQVTA 30 (225)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHhCCCEEEE
Confidence 5677777654 2345566777777887653
No 224
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=30.56 E-value=71 Score=25.65 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=20.1
Q ss_pred CCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 111 sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.| +|+.-||=||+.|+...+.. . ....|+.+++
T Consensus 58 ~d-~ivv~GGDGTl~~v~~~l~~--~-~~~~~lgiiP 90 (293)
T TIGR00147 58 VD-TVIAGGGDGTINEVVNALIQ--L-DDIPALGILP 90 (293)
T ss_pred CC-EEEEECCCChHHHHHHHHhc--C-CCCCcEEEEc
Confidence 45 45567888999998876621 1 1123666664
No 225
>PRK07062 short chain dehydrogenase; Provisional
Probab=30.51 E-value=90 Score=24.11 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=15.3
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
+++.|.|+++ -..+++++.|+++|+.|+.
T Consensus 9 k~~lItGas~--------giG~~ia~~l~~~G~~V~~ 37 (265)
T PRK07062 9 RVAVVTGGSS--------GIGLATVELLLEAGASVAI 37 (265)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHHCCCeEEE
Confidence 4555555444 1234555556666666543
No 226
>PRK08303 short chain dehydrogenase; Provisional
Probab=30.50 E-value=83 Score=25.59 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=7.1
Q ss_pred HHHHHHHHhCCCeEE
Q 032051 36 LDLGQELVSKKLDLV 50 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv 50 (148)
+++++.|++.|+.|+
T Consensus 22 ~aia~~la~~G~~Vv 36 (305)
T PRK08303 22 RGIAVELGAAGATVY 36 (305)
T ss_pred HHHHHHHHHCCCEEE
Confidence 334444455555543
No 227
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=30.41 E-value=1.5e+02 Score=21.31 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=23.2
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
++++.-.+.+ .++.....|.++++.+++.|+.+
T Consensus 2 ~~~iv~~~~P-y~~~~~~~al~~A~aa~~~gh~v 34 (128)
T PRK00207 2 RYAIAVTGPA-YGTQQASSAYQFAQALLAEGHEL 34 (128)
T ss_pred EEEEEEcCCC-CCCHHHHHHHHHHHHHHhCCCCe
Confidence 4555544443 34567789999999999998863
No 228
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=30.40 E-value=40 Score=27.65 Aligned_cols=44 Identities=5% Similarity=0.092 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHh-CCCCCcEEEecC
Q 032051 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVNQLHV 148 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~l-g~~~kPv~l~n~ 148 (148)
.+|-...++.||.+|+++=. -.+.-+..+... ..++.|++++|.
T Consensus 190 ~~~a~~~~~~aDlllviGTS----l~V~pa~~l~~~a~~~g~~vi~IN~ 234 (271)
T PTZ00409 190 LKQAEKEIDKCDLLLVVGTS----SSVSTATNLCYRAHRKKKKIVEVNI 234 (271)
T ss_pred HHHHHHHHHcCCEEEEECCC----CcccCHHHHHHHHHHcCCCEEEECC
Confidence 45666778899999996422 222222222222 135899999984
No 229
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=30.40 E-value=68 Score=27.32 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=25.8
Q ss_pred CCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 111 sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
.|.+|+..| .-||+|-...+++.. . ..||||+-
T Consensus 106 ~~GiVVtHG-TDTme~tA~~Lsl~l-~-~~kPVVlT 138 (349)
T TIGR00520 106 YDGIVITHG-TDTLEETAYFLDLTV-K-SDKPVVIV 138 (349)
T ss_pred CCEEEEeCC-cccHHHHHHHHHHHc-C-CCCCEEEE
Confidence 578887764 899999999887643 2 48999984
No 230
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.38 E-value=2.2e+02 Score=22.92 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=32.3
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCC-----------------eEEEcCCCCChHHHHHHHHhhcCCeEEEEe
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKL-----------------DLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~-----------------~lv~GGG~~GlM~a~~~gA~~~GG~viGv~ 77 (148)
++++||. ++ .-.+.+.++-++|.++|+ .++.| |. |.|--+++-. +-+++||-
T Consensus 1 m~~~~~~--~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iG-GD-GT~L~a~~~~---~~Pilgin 69 (256)
T PRK14075 1 MKLGIFY--RE----EKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVG-GD-GTVLKAAKKV---GTPLVGFK 69 (256)
T ss_pred CEEEEEe--Cc----cHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEEC-Cc-HHHHHHHHHc---CCCEEEEe
Confidence 3567772 22 233667777777776653 44555 46 7776665544 77788884
Q ss_pred C
Q 032051 78 P 78 (148)
Q Consensus 78 p 78 (148)
.
T Consensus 70 ~ 70 (256)
T PRK14075 70 A 70 (256)
T ss_pred C
Confidence 4
No 231
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=30.35 E-value=1.6e+02 Score=22.16 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=32.7
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC-CCCChHHHHHHHHhh
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG-GSVGLMGLVSHVVHR 68 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG-G~~GlM~a~~~gA~~ 68 (148)
+.++|++|+-+....+++|++...+-.+.+...+..++ |. -.+|-|........+
T Consensus 66 ~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~~~~~l-g~f~CqGk~~~~~~e~~~ 121 (160)
T PF12641_consen 66 KGKKVALFGTAGAGPDSEYAKKILKNVEALLPKGNEIL-GTFMCQGKMDPKVIEKYK 121 (160)
T ss_pred cCCeEEEEEecCCCCchHHHHHHHHHHHHhhccCCeec-ceEEeCCcCCHHHHHHHH
Confidence 44789999888777777787776666665555554332 21 113555555544444
No 232
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=30.34 E-value=81 Score=22.92 Aligned_cols=32 Identities=22% Similarity=0.167 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
|.|+|.|.+..+.. -.++.|.+.|.++|+.+.
T Consensus 1 pvv~VvG~~~sGKT----Tl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKT----TLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHH----HHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHH----HHHHHHHHHHhHcCCceE
Confidence 57899988776632 467889999999998865
No 233
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=30.28 E-value=2e+02 Score=21.27 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=8.0
Q ss_pred HHHHHHHhhcCCeEEEEe
Q 032051 60 GLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 60 ~a~~~gA~~~GG~viGv~ 77 (148)
+.+.+-..+.|.+++|-.
T Consensus 101 ~~l~~~l~~~G~~~ig~~ 118 (167)
T TIGR01752 101 GILYDKIKARGAKVVGFW 118 (167)
T ss_pred HHHHHHHHHcCCeEEcee
Confidence 333333334455555543
No 234
>PRK06849 hypothetical protein; Provisional
Probab=30.21 E-value=90 Score=26.21 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=24.6
Q ss_pred CCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 032051 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG 53 (148)
Q Consensus 12 ~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (148)
+.+++|-|.|++.. .+.++++.|.+.|+.++...
T Consensus 2 ~~~~~VLI~G~~~~--------~~l~iar~l~~~G~~Vi~~d 35 (389)
T PRK06849 2 NTKKTVLITGARAP--------AALELARLFHNAGHTVILAD 35 (389)
T ss_pred CCCCEEEEeCCCcH--------HHHHHHHHHHHCCCEEEEEe
Confidence 45689999975442 45677888888899986554
No 235
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=30.20 E-value=77 Score=26.83 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=0.0
Q ss_pred CCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 12 ~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
++...-||+-|+.++.. ++.+++||++|+.++
T Consensus 46 ~~~g~WAVVTGaTDGIG-------KayA~eLAkrG~nvv 77 (312)
T KOG1014|consen 46 EKLGSWAVVTGATDGIG-------KAYARELAKRGFNVV 77 (312)
T ss_pred HhcCCEEEEECCCCcch-------HHHHHHHHHcCCEEE
No 236
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.19 E-value=77 Score=25.28 Aligned_cols=30 Identities=23% Similarity=0.478 Sum_probs=26.6
Q ss_pred CeEEEcCCCCChHHHHHHHHhhcCCeEEEEe
Q 032051 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 47 ~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~ 77 (148)
..++||.|. |+=++.++.-.++|.+||.+.
T Consensus 9 ~vlvTgaga-GIG~~~v~~La~aGA~ViAva 38 (245)
T KOG1207|consen 9 IVLVTGAGA-GIGKEIVLSLAKAGAQVIAVA 38 (245)
T ss_pred EEEeecccc-cccHHHHHHHHhcCCEEEEEe
Confidence 357999988 999999999999999999983
No 237
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=30.14 E-value=1.3e+02 Score=23.54 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=21.3
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHhCC--CeEEEcCCC
Q 032051 19 VFCGSSTGKRNCYRDAALDLGQELVSKK--LDLVYGGGS 55 (148)
Q Consensus 19 V~ggs~~~~~~~~~~~A~~lG~~lA~~g--~~lv~GGG~ 55 (148)
=||||...+.+...+.++++.++. +.| ..+|.||+.
T Consensus 5 K~GGs~l~~~~~~~~~~~~i~~l~-~~g~~~vvV~sg~g 42 (239)
T cd04261 5 KFGGTSVASIERIKRVAERIKKRK-KKGNQVVVVVSAMG 42 (239)
T ss_pred EECCcccCCHHHHHHHHHHHHHHH-HcCCCEEEEECCCC
Confidence 378888764445566666666643 444 446677643
No 238
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=30.13 E-value=35 Score=26.82 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhC-CCCCcEEEecC
Q 032051 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVNQLHV 148 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg-~~~kPv~l~n~ 148 (148)
.++....++.||.+|+++=.. .+.-+..+.+.- ..+.|++++|.
T Consensus 162 ~~~a~~~~~~~Dl~lvvGTSl----~V~p~~~l~~~a~~~g~~~i~iN~ 206 (222)
T cd01413 162 LREAIEAAKEADLFIVLGSSL----VVYPANLLPLIAKENGAKLVIVNA 206 (222)
T ss_pred HHHHHHHHhcCCEEEEEccCC----EeccHhHHHHHHHHcCCeEEEEcC
Confidence 456666778899999975332 122222222221 36799999984
No 239
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.09 E-value=94 Score=25.56 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=0.0
Q ss_pred cCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 11 MSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 11 ~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
++..+.|.|-|.|+-+.. ++|++.++++|+.++
T Consensus 4 ~~~~k~VlItgcs~GGIG-------~ala~ef~~~G~~V~ 36 (289)
T KOG1209|consen 4 QSQPKKVLITGCSSGGIG-------YALAKEFARNGYLVY 36 (289)
T ss_pred ccCCCeEEEeecCCcchh-------HHHHHHHHhCCeEEE
No 240
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=30.04 E-value=67 Score=25.36 Aligned_cols=13 Identities=38% Similarity=0.910 Sum_probs=9.5
Q ss_pred CCEEEEecCchhhH
Q 032051 111 SDCFIALPGGYGTL 124 (148)
Q Consensus 111 sda~IvlpGG~GTL 124 (148)
-| .|++|||.|..
T Consensus 83 yD-alviPGG~~~~ 95 (213)
T cd03133 83 FD-ALIFPGGFGAA 95 (213)
T ss_pred CC-EEEECCCCchh
Confidence 44 56789999874
No 241
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=29.94 E-value=3.7e+02 Score=23.27 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHh----CCCeEEEcCC--------------CCChH-HHHHHHHhhcCCeEEEEe
Q 032051 33 DAALDLGQELVS----KKLDLVYGGG--------------SVGLM-GLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 33 ~~A~~lG~~lA~----~g~~lv~GGG--------------~~GlM-~a~~~gA~~~GG~viGv~ 77 (148)
+....+-+.+.+ .-..|||||+ ..|.| .++++.+.+.|..|+-+.
T Consensus 172 ~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 172 EIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred HHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 344444444432 2345788873 14755 456777778898888774
No 242
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.87 E-value=1.7e+02 Score=22.44 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=22.4
Q ss_pred HHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 106 ~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
+.-...|++|+.|.-.-.+.+....+. ..+.||+++|
T Consensus 56 l~~~~vDgiii~~~~~~~~~~~i~~~~-----~~gIpvV~~d 92 (274)
T cd06311 56 LINRKIDALVILPFESAPLTQPVAKAK-----KAGIFVVVVD 92 (274)
T ss_pred HHHcCCCEEEEeCCCchhhHHHHHHHH-----HCCCeEEEEc
Confidence 333468999998765444445433321 2478888876
No 243
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=29.75 E-value=1.2e+02 Score=26.21 Aligned_cols=71 Identities=10% Similarity=0.048 Sum_probs=39.1
Q ss_pred ChHHHHHHHHhhcC-CeEEEEeCCcccccccCCCCCceee-------ecCCHHHHHHHHHHcCCEEEEecCchhhHHHH
Q 032051 57 GLMGLVSHVVHRGG-GHVLGIIPKTLMNKEITGETVGEVK-------PVADMHQRKAEMARNSDCFIALPGGYGTLEEL 127 (148)
Q Consensus 57 GlM~a~~~gA~~~G-G~viGv~p~~~~~~e~~~~~~~~~~-------~~~~~~~R~~~~v~~sda~IvlpGG~GTL~El 127 (148)
|--..+.+--.+.| ..+.||++......+.+...-.+.+ +.+...++...+++.||++|..+--+|+=.++
T Consensus 277 ~~~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~~~~ 355 (402)
T PRK09536 277 QPAARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAARSGV 355 (402)
T ss_pred CcHHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCCCCc
Confidence 33344555444455 3557887765533332211111222 22344788999999999999976555544443
No 244
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=29.69 E-value=81 Score=26.39 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=22.6
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELV 43 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA 43 (148)
+|+|||||=++..--|...|++..+.+.
T Consensus 2 ~i~i~gGsFdP~H~GHl~la~~a~~~~~ 29 (342)
T PRK07152 2 KIAIFGGSFDPIHKGHINIAKKAIKKLK 29 (342)
T ss_pred eEEEEeeCCCCcCHHHHHHHHHHHHHhC
Confidence 6999999998887778888887776654
No 245
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=29.61 E-value=1.4e+02 Score=21.85 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=31.8
Q ss_pred HHHHHHhhcCCeEEEEeCCcccccccCCCCCceeeecCCHHH----HHHHHHHcCCEEEEecCch
Q 032051 61 LVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQ----RKAEMARNSDCFIALPGGY 121 (148)
Q Consensus 61 a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~----R~~~~v~~sda~IvlpGG~ 121 (148)
.+.+||.+-|=+++.|........-..-.-.+++++.++|.+ ...--+..-+++++=.|.+
T Consensus 11 qIl~GAk~EGFrT~~ic~~~r~~~Y~~f~~iDe~i~~d~f~di~~~~~q~~L~~~N~I~VPhgSf 75 (124)
T PF06849_consen 11 QILDGAKDEGFRTIAICQKGREKFYRRFPFIDEVIVLDSFSDILSEEVQEKLREMNAIFVPHGSF 75 (124)
T ss_dssp HHHHHHHHTT--EEEEEETTCHHHHHTTTT-SEEEEESSCGHCCSHHHHHHHHHTTEEE--BTTH
T ss_pred HHhhhHHHcCCcEEEEECCCCcchhhhcCcCcEEEEeCCHHHHHhHHHHHHHHHCCeEEecCCCe
Confidence 578999999999999965432111001123356677776633 4444444566655544543
No 246
>PRK05866 short chain dehydrogenase; Provisional
Probab=29.51 E-value=2.3e+02 Score=22.61 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=0.0
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
++|.|.|+++ -..+++++.|+++|+.|+.-+-...-.+.+.+...+.++.+..+
T Consensus 41 k~vlItGasg--------gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~ 94 (293)
T PRK05866 41 KRILLTGASS--------GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAV 94 (293)
T ss_pred CEEEEeCCCc--------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
No 247
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=29.45 E-value=38 Score=26.96 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=19.4
Q ss_pred EEEecCchhhHHHHHHHHHHHH----hCCCCCcEEEe
Q 032051 114 FIALPGGYGTLEELLEVITWAQ----LGIHDKPVNQL 146 (148)
Q Consensus 114 ~IvlpGG~GTL~El~~~~~~~~----lg~~~kPv~l~ 146 (148)
.|++|||.|++..+..--.+.+ ....+|||..+
T Consensus 99 av~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAI 135 (232)
T cd03148 99 AVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITL 135 (232)
T ss_pred EEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEE
Confidence 5689999999875433222211 12357887654
No 248
>PRK08589 short chain dehydrogenase; Validated
Probab=29.44 E-value=95 Score=24.34 Aligned_cols=30 Identities=10% Similarity=-0.027 Sum_probs=17.6
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
+++.|.|+++ -..+++++.|+++|+.|+.-
T Consensus 7 k~vlItGas~--------gIG~aia~~l~~~G~~vi~~ 36 (272)
T PRK08589 7 KVAVITGAST--------GIGQASAIALAQEGAYVLAV 36 (272)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEE
Confidence 4566666544 13456666667777776544
No 249
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.36 E-value=1.6e+02 Score=22.51 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=21.4
Q ss_pred HHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 106 ~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
++-...|++|+.+...-...+....+. ..+.|+|+++
T Consensus 53 l~~~~vdgvii~~~~~~~~~~~l~~~~-----~~~ipvV~~~ 89 (273)
T cd06310 53 AIARGPDAILLAPTDAKALVPPLKEAK-----DAGIPVVLID 89 (273)
T ss_pred HHHhCCCEEEEcCCChhhhHHHHHHHH-----HCCCCEEEec
Confidence 444578888887754333333433332 2467888875
No 250
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=29.35 E-value=1.1e+02 Score=24.21 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=21.0
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE-EcCCC
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV-YGGGS 55 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv-~GGG~ 55 (148)
.++||+|+|... ++-+.=..|.++|+.|. ||-|.
T Consensus 2 l~~avVCasN~N-------RSMEAH~~L~~~G~~V~SfGTGs 36 (195)
T PF04722_consen 2 LRFAVVCASNQN-------RSMEAHNVLKKAGFNVRSFGTGS 36 (195)
T ss_dssp SEEEEEESSSSS-------HHHHHHHHHHHTT-EEEEEE-SS
T ss_pred ceEEEEccCCCC-------cCHHHHHHHHHCCCceEeecCCC
Confidence 479999987752 22333456889999984 45443
No 251
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=29.34 E-value=60 Score=28.58 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCeEEEcCC----------CCChHHHHHHHHhh
Q 032051 33 DAALDLGQELVSKKLDLVYGGG----------SVGLMGLVSHVVHR 68 (148)
Q Consensus 33 ~~A~~lG~~lA~~g~~lv~GGG----------~~GlM~a~~~gA~~ 68 (148)
+.|+.|+..|-++|+.|++||- +.|+.++.++-.++
T Consensus 328 ~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle 373 (477)
T KOG2467|consen 328 KNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLE 373 (477)
T ss_pred HHHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHH
Confidence 3466677777789999999984 35888888887776
No 252
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=29.20 E-value=3.2e+02 Score=22.38 Aligned_cols=101 Identities=12% Similarity=0.122 Sum_probs=55.5
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE-EcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCce
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV-YGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGE 93 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv-~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~ 93 (148)
-++=|.+....-.++ . ....+-.+.|.+.|+.++ |-. . -+.. ++...+.|-..+ .|-. .|.. .+ .
T Consensus 94 iKlEVi~d~~~Llpd-~-~~tv~aa~~L~~~Gf~vlpyc~-d-d~~~--ar~l~~~G~~~v--mPlg-~pIG--sg-~-- 159 (248)
T cd04728 94 IKLEVIGDDKTLLPD-P-IETLKAAEILVKEGFTVLPYCT-D-DPVL--AKRLEDAGCAAV--MPLG-SPIG--SG-Q-- 159 (248)
T ss_pred EEEEEecCccccccC-H-HHHHHHHHHHHHCCCEEEEEeC-C-CHHH--HHHHHHcCCCEe--CCCC-cCCC--CC-C--
Confidence 345566544422221 1 234455666778888887 653 3 3333 333344555544 3311 1111 11 1
Q ss_pred eeecCCHHHHHHHHHHcCCEEEEecCchhhHHHHHHHHH
Q 032051 94 VKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVIT 132 (148)
Q Consensus 94 ~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~ 132 (148)
-..+ .+.-+.+.+..+.-|+..||++|.++...++.
T Consensus 160 --Gi~~-~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame 195 (248)
T cd04728 160 --GLLN-PYNLRIIIERADVPVIVDAGIGTPSDAAQAME 195 (248)
T ss_pred --CCCC-HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH
Confidence 1112 34444666768899999999999999998885
No 253
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=29.09 E-value=39 Score=27.69 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhC-CCCCcEEEecC
Q 032051 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVNQLHV 148 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg-~~~kPv~l~n~ 148 (148)
..|....++.+|.+|+ +||--.+.-++.+.+.- .++.|++++|.
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~ 249 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNL 249 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECC
Confidence 4566677789999999 45555544333322221 35779999984
No 254
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=29.09 E-value=86 Score=24.31 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=19.7
Q ss_pred EeCCCCCCC---hHHHHHHHHHHHHHHhCCCeEEEcCCC
Q 032051 20 FCGSSTGKR---NCYRDAALDLGQELVSKKLDLVYGGGS 55 (148)
Q Consensus 20 ~ggs~~~~~---~~~~~~A~~lG~~lA~~g~~lv~GGG~ 55 (148)
+|||....+ +...+.++++.+...+....+|.|||.
T Consensus 5 lGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~ 43 (221)
T TIGR02076 5 LGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGK 43 (221)
T ss_pred echhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcH
Confidence 566665442 334455555555433345667888754
No 255
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=29.04 E-value=1.1e+02 Score=22.65 Aligned_cols=48 Identities=23% Similarity=0.238 Sum_probs=29.8
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCC--e-EEEcCCCCChHHHHHH
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKL--D-LVYGGGSVGLMGLVSH 64 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~--~-lv~GGG~~GlM~a~~~ 64 (148)
..|.=+|.... ....|-+.|..+++.+++... . ++||-|- |++=++++
T Consensus 26 ~eV~D~G~~~~-~~~dy~~~a~~va~~V~~~~~d~GIliCgtGi-G~~iaANK 76 (140)
T PF02502_consen 26 YEVIDFGTYSE-DSVDYPDFAEKVAEAVASGEADRGILICGTGI-GMSIAANK 76 (140)
T ss_dssp EEEEEESESST-ST--HHHHHHHHHHHHHTTSSSEEEEEESSSH-HHHHHHHT
T ss_pred CEEEEeCCCCC-CCCCHHHHHHHHHHHHHcccCCeEEEEcCCCh-hhhhHhhc
Confidence 35566654443 355799999999999987532 2 4666655 66666554
No 256
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=28.95 E-value=56 Score=27.04 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCEEEEecCchhhHHH--HHHHHHHHHhC-CCCCcEEE
Q 032051 102 QRKAEMARNSDCFIALPGGYGTLEE--LLEVITWAQLG-IHDKPVNQ 145 (148)
Q Consensus 102 ~R~~~~v~~sda~IvlpGG~GTL~E--l~~~~~~~~lg-~~~kPv~l 145 (148)
+--.-|.+.||++++= +|||++ +-.+....+.- ..++|++|
T Consensus 47 eE~~e~~kia~AL~IN---IGTL~~~~~~~m~~A~~~An~~~~PvvL 90 (265)
T COG2145 47 EEVEEFAKIADALLIN---IGTLSAERIQAMRAAIKAANESGKPVVL 90 (265)
T ss_pred HHHHHHHHhccceEEe---eccCChHHHHHHHHHHHHHHhcCCCEEe
Confidence 4455678899997774 688887 44333333433 57899976
No 257
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.92 E-value=1.8e+02 Score=22.21 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=21.7
Q ss_pred HHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 105 ~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.++-...|++|+.|....+.++....+. ..++|++++|
T Consensus 50 ~~~~~~~dgiii~~~~~~~~~~~l~~~~-----~~~ipvV~~~ 87 (277)
T cd06319 50 TAIDKGVSGIIISPTNSSAAVTLLKLAA-----QAKIPVVIAD 87 (277)
T ss_pred HHHhcCCCEEEEcCCchhhhHHHHHHHH-----HCCCCEEEEe
Confidence 3444678888877654433444433321 2467888876
No 258
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=28.90 E-value=1e+02 Score=23.42 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=9.0
Q ss_pred HHHHHHHHhCCCeEEE
Q 032051 36 LDLGQELVSKKLDLVY 51 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~ 51 (148)
..+++.|+++|+.|+.
T Consensus 19 ~~ia~~l~~~G~~vi~ 34 (248)
T TIGR01832 19 QGIAVGLAEAGADIVG 34 (248)
T ss_pred HHHHHHHHHCCCEEEE
Confidence 4455555666666543
No 259
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=28.84 E-value=1.3e+02 Score=22.43 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=20.5
Q ss_pred CCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 12 ~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
.+.++|.|+||+.. .- -.+..++|.|+++|+.+
T Consensus 23 ~~~~~v~il~G~Gn----NG-gDgl~~AR~L~~~G~~V 55 (169)
T PF03853_consen 23 PKGPRVLILCGPGN----NG-GDGLVAARHLANRGYNV 55 (169)
T ss_dssp CTT-EEEEEE-SSH----HH-HHHHHHHHHHHHTTCEE
T ss_pred cCCCeEEEEECCCC----Ch-HHHHHHHHHHHHCCCeE
Confidence 55678888887752 11 34456777788888876
No 260
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=28.82 E-value=2.1e+02 Score=20.07 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCEEEEecCchhh
Q 032051 101 HQRKAEMARNSDCFIALPGGYGT 123 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~GT 123 (148)
...+..+ +.||.+|+++-....
T Consensus 69 ~~~~~~l-~~aDlvl~iG~~~~~ 90 (137)
T PF00205_consen 69 PAANEAL-EQADLVLAIGTRLSD 90 (137)
T ss_dssp HHHHHHH-HHSSEEEEESSSSST
T ss_pred HHHHHHh-cCCCEEEEECCCCcc
Confidence 4445554 999999999866543
No 261
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=28.81 E-value=1.8e+02 Score=22.44 Aligned_cols=10 Identities=10% Similarity=-0.260 Sum_probs=4.4
Q ss_pred HcCCEEEEec
Q 032051 109 RNSDCFIALP 118 (148)
Q Consensus 109 ~~sda~Ivlp 118 (148)
-+||.+...|
T Consensus 151 ~Hs~~v~~~~ 160 (209)
T PRK13146 151 VHSYYAQPAN 160 (209)
T ss_pred EeEEEEEcCC
Confidence 3455544333
No 262
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=28.79 E-value=40 Score=26.85 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=18.8
Q ss_pred EEEecCchhhHHHHHHHHHHHHh----CCCCCcEEEe
Q 032051 114 FIALPGGYGTLEELLEVITWAQL----GIHDKPVNQL 146 (148)
Q Consensus 114 ~IvlpGG~GTL~El~~~~~~~~l----g~~~kPv~l~ 146 (148)
.|++|||.|.+..+..--.+.++ ...+|||..+
T Consensus 97 av~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAI 133 (231)
T cd03147 97 IFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAV 133 (231)
T ss_pred EEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEE
Confidence 56889999876654422211111 1357888654
No 263
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=28.70 E-value=3.6e+02 Score=22.73 Aligned_cols=34 Identities=15% Similarity=0.004 Sum_probs=18.4
Q ss_pred CCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEE
Q 032051 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQ 145 (148)
Q Consensus 111 sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l 145 (148)
=|++ ++-||-||++-.........-...+.||+.
T Consensus 93 I~~L-v~IGGd~s~~~a~~L~e~~~~~~~~i~vig 126 (338)
T cd00363 93 IDAL-VVIGGDGSYTGADLLTEEWPSKYQGFNVIG 126 (338)
T ss_pred CCEE-EEeCCHHHHHHHHHHHHHHHhcCCCccEEE
Confidence 3444 455788888766554443222224566654
No 264
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=28.70 E-value=1.2e+02 Score=22.74 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=21.0
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG 53 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (148)
++|.|.|+++ ....++++.|+++|+.++.-.
T Consensus 3 k~vlItG~s~--------~iG~~la~~l~~~g~~vi~~~ 33 (245)
T PRK12824 3 KIALVTGAKR--------GIGSAIARELLNDGYRVIATY 33 (245)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHHcCCEEEEEe
Confidence 4677777655 244667777788888876554
No 265
>PRK05993 short chain dehydrogenase; Provisional
Probab=28.58 E-value=1.2e+02 Score=23.72 Aligned_cols=30 Identities=13% Similarity=0.040 Sum_probs=17.4
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
++|.|.|+++ -....+++.|+++|+.|+.-
T Consensus 5 k~vlItGasg--------giG~~la~~l~~~G~~Vi~~ 34 (277)
T PRK05993 5 RSILITGCSS--------GIGAYCARALQSDGWRVFAT 34 (277)
T ss_pred CEEEEeCCCc--------HHHHHHHHHHHHCCCEEEEE
Confidence 4666666544 13345566667777776543
No 266
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=28.53 E-value=1.5e+02 Score=22.76 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=19.6
Q ss_pred HHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 108 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 108 v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
-...|++|+.|.-....++....+. ..+.|++++|
T Consensus 54 ~~~vdgiii~~~~~~~~~~~~~~~~-----~~~ipvV~~~ 88 (270)
T cd06308 54 RQGVDLLIISPNEAAPLTPVVEEAY-----RAGIPVILLD 88 (270)
T ss_pred HhCCCEEEEecCchhhchHHHHHHH-----HCCCCEEEeC
Confidence 3457888887654333334332221 2467888876
No 267
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=28.46 E-value=3.1e+02 Score=22.01 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=43.5
Q ss_pred HHHHHHHHhhcCCeEEEEeCCccccc-------ccCCCCCceeeecCCHHHHHHHHH--HcCCEEEEecCchhhHHHHH-
Q 032051 59 MGLVSHVVHRGGGHVLGIIPKTLMNK-------EITGETVGEVKPVADMHQRKAEMA--RNSDCFIALPGGYGTLEELL- 128 (148)
Q Consensus 59 M~a~~~gA~~~GG~viGv~p~~~~~~-------e~~~~~~~~~~~~~~~~~R~~~~v--~~sda~IvlpGG~GTL~El~- 128 (148)
-=+.+-.|..-||++|-|+|+..... +....+..+.++.+.. ..+|- ...| |+++-.- .+|..
T Consensus 58 tiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~---e~~~~~~~~iD-F~vVDc~---~~d~~~ 130 (218)
T PF07279_consen 58 TIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAP---EEVMPGLKGID-FVVVDCK---REDFAA 130 (218)
T ss_pred HHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCH---HHHHhhccCCC-EEEEeCC---chhHHH
Confidence 44556677888999999999764211 1112233344443332 22332 3445 4444444 45555
Q ss_pred HHHHHHHhCCCCCcEEEec
Q 032051 129 EVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 129 ~~~~~~~lg~~~kPv~l~n 147 (148)
..+...+++..+-=|+..|
T Consensus 131 ~vl~~~~~~~~GaVVV~~N 149 (218)
T PF07279_consen 131 RVLRAAKLSPRGAVVVCYN 149 (218)
T ss_pred HHHHHhccCCCceEEEEec
Confidence 6666666664444444455
No 268
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.41 E-value=1.7e+02 Score=22.41 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=21.1
Q ss_pred HHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 106 ~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
++-...|++|+.|...-++.+....+. ..+.|++++|
T Consensus 53 l~~~~vdgiii~~~~~~~~~~~l~~~~-----~~~ipvV~~~ 89 (271)
T cd06312 53 AIAAKPDGIVVTIPDPDALDPAIKRAV-----AAGIPVISFN 89 (271)
T ss_pred HHHhCCCEEEEeCCChHHhHHHHHHHH-----HCCCeEEEeC
Confidence 445578999888854322333322221 2467888876
No 269
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=28.32 E-value=1.7e+02 Score=19.00 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=23.1
Q ss_pred cCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 11 MSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 11 ~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
.+..+.+.++. .... ++...=.++++.|+++|+.++.
T Consensus 12 ~~~~k~~v~i~-HG~~---eh~~ry~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 12 ENPPKAVVVIV-HGFG---EHSGRYAHLAEFLAEQGYAVFA 48 (79)
T ss_pred CCCCCEEEEEe-CCcH---HHHHHHHHHHHHHHhCCCEEEE
Confidence 33334455553 3433 3444557899999999999863
No 270
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=28.26 E-value=1.1e+02 Score=28.23 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=30.0
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHH
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGL 61 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a 61 (148)
.-..|+|+|||. +.|.+.+.++.+.|.+.|...|+=+|+-+-|+.
T Consensus 545 sga~i~viCssD----~~Y~~~a~~~~~al~~ag~~~v~lAG~p~~~~~ 589 (619)
T TIGR00642 545 AGAQVAVLCSSD----KVYAQQGLEVAKALKAAGAKALYLAGAFKEFGD 589 (619)
T ss_pred cCCCEEEEeCCC----cchHHHHHHHHHHHHhCCCCEEEEeCCCcchhh
Confidence 345799999765 468899999999996655443333344354544
No 271
>PRK12367 short chain dehydrogenase; Provisional
Probab=28.14 E-value=1e+02 Score=24.22 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=18.7
Q ss_pred CeEEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 47 ~~lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
..+||||+. |+=.++++...+.|..++.+
T Consensus 16 ~~lITGas~-gIG~ala~~l~~~G~~Vi~~ 44 (245)
T PRK12367 16 RIGITGASG-ALGKALTKAFRAKGAKVIGL 44 (245)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHCCCEEEEE
Confidence 446666644 77777777666666666655
No 272
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=28.10 E-value=47 Score=26.64 Aligned_cols=44 Identities=2% Similarity=0.043 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhC-CCCCcEEEecC
Q 032051 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVNQLHV 148 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg-~~~kPv~l~n~ 148 (148)
.+|....++.||.+|+++=. -++.-+..+.+.- .++.|++++|.
T Consensus 169 ~~~~~~~~~~aDl~lviGTS----l~V~pa~~l~~~~~~~g~~~i~iN~ 213 (244)
T PRK14138 169 LREAIRLSSKASLMIVMGSS----LVVYPAAELPLITVRSGGKLVIVNL 213 (244)
T ss_pred HHHHHHHHhcCCEEEEeCcC----CeeecHhHHHHHHHHcCCeEEEEcC
Confidence 46666778899999997533 2233333332222 36899999984
No 273
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=28.07 E-value=3.3e+02 Score=22.14 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=33.0
Q ss_pred eeecCCHHHHHHHHHHcCCEEEEe---cCchhh----HHHHHHHHHHHHhCCCCCcEEE
Q 032051 94 VKPVADMHQRKAEMARNSDCFIAL---PGGYGT----LEELLEVITWAQLGIHDKPVNQ 145 (148)
Q Consensus 94 ~~~~~~~~~R~~~~v~~sda~Ivl---pGG~GT----L~El~~~~~~~~lg~~~kPv~l 145 (148)
++.+++-.+|-..+.+.|+.||-+ +|=.|. .+++.+.+...+- ..++|+.+
T Consensus 150 lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~-~t~~Pi~v 207 (263)
T CHL00200 150 LIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKK-MTNKPIIL 207 (263)
T ss_pred EECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHH-hcCCCEEE
Confidence 344566689999999999987766 676665 2344444433222 34788864
No 274
>PRK07677 short chain dehydrogenase; Provisional
Probab=27.99 E-value=1.1e+02 Score=23.42 Aligned_cols=15 Identities=7% Similarity=0.255 Sum_probs=7.8
Q ss_pred HHHHHHHHhCCCeEE
Q 032051 36 LDLGQELVSKKLDLV 50 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv 50 (148)
+.+++.|+++|+.|+
T Consensus 15 ~~ia~~l~~~G~~Vi 29 (252)
T PRK07677 15 KAMAKRFAEEGANVV 29 (252)
T ss_pred HHHHHHHHHCCCEEE
Confidence 444555555565543
No 275
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.95 E-value=1.1e+02 Score=24.08 Aligned_cols=17 Identities=12% Similarity=0.415 Sum_probs=10.6
Q ss_pred HHHHHHHHhCCCeEEEc
Q 032051 36 LDLGQELVSKKLDLVYG 52 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~G 52 (148)
+++++.|+++|+.|+.-
T Consensus 23 ~aiA~~la~~Ga~V~~~ 39 (271)
T PRK06505 23 WGIAKQLAAQGAELAFT 39 (271)
T ss_pred HHHHHHHHhCCCEEEEe
Confidence 45566667777776543
No 276
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=27.91 E-value=1e+02 Score=23.81 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=17.6
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
+++.|.|+++ -..+.+++.|+++|+.|+.
T Consensus 9 k~~lItGas~--------gIG~aia~~l~~~G~~vv~ 37 (251)
T PRK12481 9 KVAIITGCNT--------GLGQGMAIGLAKAGADIVG 37 (251)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHHCCCEEEE
Confidence 4566666544 2345666677777777754
No 277
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=27.82 E-value=2.2e+02 Score=19.93 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHh
Q 032051 35 ALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVH 67 (148)
Q Consensus 35 A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~ 67 (148)
.+++.+.+.+.....++|-| +-...+..+++
T Consensus 3 ~~~~a~~~~~~~~i~~~G~G--~s~~~a~e~~~ 33 (153)
T cd05009 3 IKELAEKLKEAKSFYVLGRG--PNYGTALEGAL 33 (153)
T ss_pred HHHHHHHHhccCcEEEEcCC--CCHHHHHHHHH
Confidence 35566677777666777764 34444444444
No 278
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.81 E-value=1.6e+02 Score=22.40 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=20.8
Q ss_pred HHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 106 ~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
++-...|++|+.++-..+..++...+. ..+.|++++|
T Consensus 51 ~~~~~vdgii~~~~~~~~~~~~i~~~~-----~~~ipvV~~~ 87 (273)
T cd06305 51 AIAQKVDAIIIQHGRAEVLKPWVKRAL-----DAGIPVVAFD 87 (273)
T ss_pred HHHcCCCEEEEecCChhhhHHHHHHHH-----HcCCCEEEec
Confidence 344567888887754444444432221 2457887776
No 279
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=27.80 E-value=1.6e+02 Score=23.15 Aligned_cols=40 Identities=15% Similarity=-0.119 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHh----CCCe-EE-EcCCC--C--ChHHHHHHHHhhcCC
Q 032051 32 RDAALDLGQELVS----KKLD-LV-YGGGS--V--GLMGLVSHVVHRGGG 71 (148)
Q Consensus 32 ~~~A~~lG~~lA~----~g~~-lv-~GGG~--~--GlM~a~~~gA~~~GG 71 (148)
+..|+.+|.+||+ .|+. ++ -=||+ . |-..|+++||.++|-
T Consensus 79 ~~AAy~vG~llA~ral~kGi~~vvfDrGg~~yh~gGRV~A~akgArd~GL 128 (193)
T PRK08569 79 TPAAYLTGLLAGKKALKAGVEEAVLDIGLHRPTKGSRVFAALKGAIDAGL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCCccccCCccHHHHHHHHHHcCC
Confidence 4788889988886 3543 22 12223 2 899999999999875
No 280
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.79 E-value=3.9e+02 Score=23.87 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCC-CeEEEcCCCC--ChHHHHHHHHhhcCCeEE------EEeCCcccccccCCCCCceeeecCCHHHHH
Q 032051 34 AALDLGQELVSKK-LDLVYGGGSV--GLMGLVSHVVHRGGGHVL------GIIPKTLMNKEITGETVGEVKPVADMHQRK 104 (148)
Q Consensus 34 ~A~~lG~~lA~~g-~~lv~GGG~~--GlM~a~~~gA~~~GG~vi------Gv~p~~~~~~e~~~~~~~~~~~~~~~~~R~ 104 (148)
...++.++|.+.. -.|+.|+|-. |..+++.+=|-..|-.++ |++|+. ++.+.-.+-...-...+
T Consensus 195 ~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~-------hp~~~G~~G~~~~~~~~ 267 (572)
T PRK08979 195 QIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPGT-------HKNSLGMLGMHGRYEAN 267 (572)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcccccccCCCC-------CcccccCCccCCCHHHH
Confidence 3455666666654 4456676653 666766655555666665 233221 11111111111112333
Q ss_pred HHHHHcCCEEEEecCchh
Q 032051 105 AEMARNSDCFIALPGGYG 122 (148)
Q Consensus 105 ~~~v~~sda~IvlpGG~G 122 (148)
. .++.||.+|+++--++
T Consensus 268 ~-~~~~aD~vl~vG~~~~ 284 (572)
T PRK08979 268 M-AMHNADLIFGIGVRFD 284 (572)
T ss_pred H-HHHhCCEEEEEcCCCC
Confidence 3 5678999999986543
No 281
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=27.78 E-value=2.5e+02 Score=20.60 Aligned_cols=46 Identities=7% Similarity=-0.029 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEe
Q 032051 31 YRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 31 ~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~ 77 (148)
|-.-..-+...|-.+||.+++-| ..--.+.+.+.|.+.+-.+||+.
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG-~~v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLG-VLSPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEe
Confidence 43333455667777899999987 55778999999999999999994
No 282
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=27.60 E-value=1.1e+02 Score=22.30 Aligned_cols=35 Identities=9% Similarity=-0.020 Sum_probs=16.7
Q ss_pred HhhccCCcceEEEEeCCCCCCChHHHHHHHHHHHH
Q 032051 7 AAKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQE 41 (148)
Q Consensus 7 ~~~~~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~ 41 (148)
+....++...++|+|+-...-.+.|...+..+.+.
T Consensus 66 l~~~~n~~~~~gV~gsGnr~~g~~f~~a~~~i~~~ 100 (134)
T PRK03600 66 LNDEHNRKLLRGVIASGNRNFGDAFALAGDVISAK 100 (134)
T ss_pred HhccccCCcEEEEEEecCchHHHHHHHHHHHHHHH
Confidence 43345555566666543332234455444444443
No 283
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.56 E-value=64 Score=24.81 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCEEEEecCchhhHHHHHHHHH
Q 032051 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVIT 132 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~ 132 (148)
.-|+.+.-+.-+.+|+|+-|+|-.+|++++-.
T Consensus 124 ~lr~~I~e~dkp~LilfGTGwGlpde~m~~sD 155 (190)
T COG4752 124 WLRNEIQERDKPWLILFGTGWGLPDELMNTSD 155 (190)
T ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHHHHHhh
Confidence 56999999999999999999999999998754
No 284
>PLN02494 adenosylhomocysteinase
Probab=27.55 E-value=2.2e+02 Score=25.54 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=38.2
Q ss_pred eEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCceeeecCCHHHHHHHHHHcCCEEEEecCchhhH-HH
Q 032051 48 DLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTL-EE 126 (148)
Q Consensus 48 ~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL-~E 126 (148)
.+|.|.|+ +=..+++-+...|.+|+.+-.......+.....+ +. .++.+ .++.+|.+|...|..+.+ .|
T Consensus 257 VvViGyG~--IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~-~v---v~leE----al~~ADVVI~tTGt~~vI~~e 326 (477)
T PLN02494 257 AVICGYGD--VGKGCAAAMKAAGARVIVTEIDPICALQALMEGY-QV---LTLED----VVSEADIFVTTTGNKDIIMVD 326 (477)
T ss_pred EEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCC-ee---ccHHH----HHhhCCEEEECCCCccchHHH
Confidence 35777665 4456666677778888877332211001101111 11 13322 457799999888877765 44
Q ss_pred HHH
Q 032051 127 LLE 129 (148)
Q Consensus 127 l~~ 129 (148)
.+.
T Consensus 327 ~L~ 329 (477)
T PLN02494 327 HMR 329 (477)
T ss_pred HHh
Confidence 443
No 285
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.52 E-value=1.2e+02 Score=23.93 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=8.6
Q ss_pred HHHHHHHHhCCCeEEE
Q 032051 36 LDLGQELVSKKLDLVY 51 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~ 51 (148)
+++++.|+++|+.|+.
T Consensus 22 ~aia~~la~~G~~vil 37 (262)
T PRK07984 22 YGIAQAMHREGAELAF 37 (262)
T ss_pred HHHHHHHHHCCCEEEE
Confidence 4455555566666543
No 286
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=27.33 E-value=2.3e+02 Score=24.16 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=41.5
Q ss_pred CCCCCceeeecCCHHHHHHHHHHcCCE-EEEecCch----hhHHH-HHHHHHHHHhC-CCCCcEEEec
Q 032051 87 TGETVGEVKPVADMHQRKAEMARNSDC-FIALPGGY----GTLEE-LLEVITWAQLG-IHDKPVNQLH 147 (148)
Q Consensus 87 ~~~~~~~~~~~~~~~~R~~~~v~~sda-~IvlpGG~----GTL~E-l~~~~~~~~lg-~~~kPv~l~n 147 (148)
..+.+..++...++.+|...+-..-++ +=+..||+ -|.++ +-.+..+..+. ....||-.||
T Consensus 165 s~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~ 232 (335)
T COG0502 165 SPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLN 232 (335)
T ss_pred CHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeec
Confidence 344556677888999998887665444 22223333 35666 77778888888 6789998887
No 287
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=27.32 E-value=1.7e+02 Score=22.34 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=21.1
Q ss_pred HHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 107 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 107 ~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
+-...|++|+.|--..-.+++...+. ..+.|+++++
T Consensus 53 ~~~~vdgiii~~~~~~~~~~~~~~l~-----~~~iPvv~~~ 88 (272)
T cd06301 53 IAQGVDAIIVVPVDTAATAPIVKAAN-----AAGIPLVYVN 88 (272)
T ss_pred HHcCCCEEEEecCchhhhHHHHHHHH-----HCCCeEEEec
Confidence 34467888888755433344433331 2467888775
No 288
>PRK05854 short chain dehydrogenase; Provisional
Probab=27.26 E-value=1.1e+02 Score=24.85 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=9.6
Q ss_pred HHHHHHHHhCCCeEEEc
Q 032051 36 LDLGQELVSKKLDLVYG 52 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~G 52 (148)
+++++.|+++|+.|+.-
T Consensus 28 ~~~a~~La~~G~~Vil~ 44 (313)
T PRK05854 28 LGLARRLAAAGAEVILP 44 (313)
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 44555556666665543
No 289
>PRK09072 short chain dehydrogenase; Provisional
Probab=27.25 E-value=1.1e+02 Score=23.56 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=8.0
Q ss_pred HHHHHHHHhCCCeEE
Q 032051 36 LDLGQELVSKKLDLV 50 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv 50 (148)
.++.+.|+++|+.|+
T Consensus 19 ~~ia~~l~~~G~~V~ 33 (263)
T PRK09072 19 QALAEALAAAGARLL 33 (263)
T ss_pred HHHHHHHHHCCCEEE
Confidence 445555555666543
No 290
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.22 E-value=1.5e+02 Score=22.49 Aligned_cols=37 Identities=19% Similarity=0.073 Sum_probs=19.6
Q ss_pred HHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 106 ~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
++-...|++|+.|.-..+..+....+. ..+.|++++|
T Consensus 52 l~~~~vdgiii~~~~~~~~~~~l~~~~-----~~~iPvV~~~ 88 (275)
T cd06317 52 LIAQKVDGIILWPTDGQAYIPGLRKAK-----QAGIPVVITN 88 (275)
T ss_pred HHHcCCCEEEEecCCccccHHHHHHHH-----HCCCcEEEeC
Confidence 334467777777654433333332221 2467777765
No 291
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=27.08 E-value=2.7e+02 Score=22.84 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=21.5
Q ss_pred HHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 108 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 108 v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
+..+|++|..-+...+.+.+..++. + ..++|.++++
T Consensus 236 l~~aDvVi~at~~~~~~~~~~~~~~--~--~~~~~~~viD 271 (311)
T cd05213 236 LNEADVVISATGAPHYAKIVERAMK--K--RSGKPRLIVD 271 (311)
T ss_pred HhcCCEEEECCCCCchHHHHHHHHh--h--CCCCCeEEEE
Confidence 5679999999888877222222221 1 1246777765
No 292
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=27.02 E-value=2.3e+02 Score=24.20 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=11.5
Q ss_pred HcCCEEEEecCch
Q 032051 109 RNSDCFIALPGGY 121 (148)
Q Consensus 109 ~~sda~IvlpGG~ 121 (148)
..+|.+|+++||.
T Consensus 105 ~~~D~IiavGGGS 117 (395)
T PRK15454 105 SGCDGVIAFGGGS 117 (395)
T ss_pred cCcCEEEEeCChH
Confidence 4799999999987
No 293
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=26.99 E-value=2.4e+02 Score=23.15 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHhC-CCeEEEcCCCCChHHHHHHHHhhcCCeEE
Q 032051 29 NCYRDAALDLGQELVSK-KLDLVYGGGSVGLMGLVSHVVHRGGGHVL 74 (148)
Q Consensus 29 ~~~~~~A~~lG~~lA~~-g~~lv~GGG~~GlM~a~~~gA~~~GG~vi 74 (148)
-.|.+.|-.+..-+|.+ |..+..|- ..|-+.-+.+.|.+++|..+
T Consensus 91 ~~~Lr~A~~fVa~vA~r~GiILFv~t-n~~~~~~ve~aA~r~~gy~~ 136 (251)
T KOG0832|consen 91 ASYLRRALNFVAHVAHRGGIILFVGT-NNGFKDLVERAARRAGGYSH 136 (251)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEec-CcchHHHHHHHHHHhcCcee
Confidence 46889999999999976 66666665 66999999999999998655
No 294
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=26.84 E-value=1.1e+02 Score=27.79 Aligned_cols=44 Identities=32% Similarity=0.437 Sum_probs=35.2
Q ss_pred HHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhC-CCCCcEEEec
Q 032051 103 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVNQLH 147 (148)
Q Consensus 103 R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg-~~~kPv~l~n 147 (148)
...-+|..||.-|.+-|-.||==|++.-.- -|+. ..+||.|-+|
T Consensus 237 ~~i~~VA~Sd~tVLi~GETGtGKElvAraI-H~~S~R~~kPfV~~N 281 (550)
T COG3604 237 KEIEVVAKSDSTVLIRGETGTGKELVARAI-HQLSPRRDKPFVKLN 281 (550)
T ss_pred HHHHHHhcCCCeEEEecCCCccHHHHHHHH-HhhCcccCCCceeee
Confidence 455678889999999999999999985443 3333 5789999998
No 295
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=26.81 E-value=2.3e+02 Score=19.87 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=17.2
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCC
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKL 47 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~ 47 (148)
|++.|+|+++ ...+++.+.++++|.
T Consensus 1 k~~lItGa~~--------giG~~~a~~l~~~g~ 25 (167)
T PF00106_consen 1 KTVLITGASS--------GIGRALARALARRGA 25 (167)
T ss_dssp EEEEEETTTS--------HHHHHHHHHHHHTTT
T ss_pred CEEEEECCCC--------HHHHHHHHHHHhcCc
Confidence 4677887655 356778888888844
No 296
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=26.73 E-value=3.7e+02 Score=22.81 Aligned_cols=13 Identities=46% Similarity=0.715 Sum_probs=11.4
Q ss_pred HcCCEEEEecCch
Q 032051 109 RNSDCFIALPGGY 121 (148)
Q Consensus 109 ~~sda~IvlpGG~ 121 (148)
..+|.+|+++||.
T Consensus 87 ~~~D~IiaiGGGS 99 (383)
T PRK09860 87 NNCDSVISLGGGS 99 (383)
T ss_pred cCCCEEEEeCCch
Confidence 4789999999986
No 297
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=26.61 E-value=2.2e+02 Score=22.36 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=23.4
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
...|+|+-.+. .++-+.+....+-+.+.++|+.++.
T Consensus 26 ~~~I~vi~~~~--~~~f~~~~~~~i~~~~~~~G~~~~~ 61 (295)
T PRK10653 26 KDTIALVVSTL--NNPFFVSLKDGAQKEADKLGYNLVV 61 (295)
T ss_pred CCeEEEEecCC--CChHHHHHHHHHHHHHHHcCCeEEE
Confidence 45788776432 2455666667777777777877654
No 298
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=26.53 E-value=2.5e+02 Score=23.63 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=11.2
Q ss_pred HcCCEEEEecCch
Q 032051 109 RNSDCFIALPGGY 121 (148)
Q Consensus 109 ~~sda~IvlpGG~ 121 (148)
..+|++|+++||.
T Consensus 82 ~~~D~IiavGGGS 94 (380)
T cd08185 82 EGCDFVVGLGGGS 94 (380)
T ss_pred cCCCEEEEeCCcc
Confidence 3689999999986
No 299
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=26.50 E-value=1.1e+02 Score=23.21 Aligned_cols=29 Identities=21% Similarity=0.100 Sum_probs=15.6
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
++.|-|-|+|+ -.-+.+++.|+++|+.++
T Consensus 5 ~~~ilITGas~--------GiG~aia~~l~~~G~~v~ 33 (251)
T COG1028 5 GKVALVTGASS--------GIGRAIARALAREGARVV 33 (251)
T ss_pred CCEEEEeCCCC--------HHHHHHHHHHHHCCCeEE
Confidence 34555665544 233455555666676643
No 300
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=26.50 E-value=2.3e+02 Score=24.80 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=38.3
Q ss_pred CeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCceeeecCCHHHHHHHHHHcCCEEEEecCchhhHHH
Q 032051 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEE 126 (148)
Q Consensus 47 ~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~E 126 (148)
..+|.|.|+.|.. +++-++..|.+|+.+-+.... .+.....-.+.. .+. . .+..+|.+|-..|...++++
T Consensus 204 tVvViG~G~IG~~--va~~ak~~Ga~ViV~d~d~~R-~~~A~~~G~~~~---~~~---e-~v~~aDVVI~atG~~~~i~~ 273 (413)
T cd00401 204 VAVVAGYGDVGKG--CAQSLRGQGARVIVTEVDPIC-ALQAAMEGYEVM---TME---E-AVKEGDIFVTTTGNKDIITG 273 (413)
T ss_pred EEEEECCCHHHHH--HHHHHHHCCCEEEEEECChhh-HHHHHhcCCEEc---cHH---H-HHcCCCEEEECCCCHHHHHH
Confidence 3468888765553 444566677787776332211 111111111111 222 1 34678999999888887775
Q ss_pred H
Q 032051 127 L 127 (148)
Q Consensus 127 l 127 (148)
-
T Consensus 274 ~ 274 (413)
T cd00401 274 E 274 (413)
T ss_pred H
Confidence 3
No 301
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=26.40 E-value=1e+02 Score=26.00 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=18.7
Q ss_pred cCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe
Q 032051 11 MSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD 48 (148)
Q Consensus 11 ~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~ 48 (148)
|+++.+|+|.|++.. ...+|-+.|.+++|.
T Consensus 1 m~~~~~IaIvGATG~--------vG~eLlrlL~~~~hP 30 (336)
T PRK05671 1 MSQPLDIAVVGATGT--------VGEALVQILEERDFP 30 (336)
T ss_pred CCCCCEEEEEccCCH--------HHHHHHHHHhhCCCC
Confidence 356678999986552 245666666655543
No 302
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=26.37 E-value=1.1e+02 Score=23.44 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHh-CCCeE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVS-KKLDL 49 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~-~g~~l 49 (148)
++|.|+.+|..++ -.+.|+++.+.+.+ .|..+
T Consensus 2 ~kilIvy~S~~G~---T~~lA~~ia~g~~~~~G~ev 34 (200)
T PRK03767 2 AKVLVLYYSMYGH---IETMAEAVAEGAREVAGAEV 34 (200)
T ss_pred CeEEEEEcCCCCH---HHHHHHHHHHHHhhcCCcEE
Confidence 4677777777542 34678888887776 77665
No 303
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=26.29 E-value=1.8e+02 Score=24.16 Aligned_cols=32 Identities=16% Similarity=0.381 Sum_probs=19.6
Q ss_pred cCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 110 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 110 ~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.+|.+|+++||. .--+.-+.++ ..+.|++.+-
T Consensus 80 ~~d~IIaIGGGs--~~D~aK~vA~----~~~~p~i~IP 111 (348)
T cd08175 80 DTDLIIAVGSGT--INDITKYVSY----KTGIPYISVP 111 (348)
T ss_pred cCCEEEEECCcH--HHHHHHHHHH----hcCCCEEEec
Confidence 799999999986 2222222222 1367887764
No 304
>PRK07102 short chain dehydrogenase; Provisional
Probab=26.29 E-value=1.1e+02 Score=23.23 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=15.1
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
++|.|.|+++ -....+.+.|+++|+.|+
T Consensus 2 ~~vlItGas~--------giG~~~a~~l~~~G~~Vi 29 (243)
T PRK07102 2 KKILIIGATS--------DIARACARRYAAAGARLY 29 (243)
T ss_pred cEEEEEcCCc--------HHHHHHHHHHHhcCCEEE
Confidence 4566666543 123455555666666653
No 305
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=26.28 E-value=2.5e+02 Score=23.39 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=34.6
Q ss_pred EEEeCCCCCC--ChHHHHHHHHHHHHHHhCCCe-EEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 18 CVFCGSSTGK--RNCYRDAALDLGQELVSKKLD-LVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 18 ~V~ggs~~~~--~~~~~~~A~~lG~~lA~~g~~-lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
+++++||..+ +++. -++..+.|-++++. |++=||. |-|..+.+=+.+.+-.+|||
T Consensus 64 t~LgtsR~~~~~~~~~---~~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~e~~~i~vigi 121 (301)
T TIGR02482 64 TILGTARCPEFKTEEG---RQKAVENLKKLGIEGLVVIGGD-GSYTGAQKLYEEGGIPVIGL 121 (301)
T ss_pred ceeccCCCCccCCHHH---HHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHHhhCCCEEee
Confidence 5678787542 2222 34555667676665 3444457 99988877555567888997
No 306
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=26.26 E-value=85 Score=24.44 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHh-CCCCCcEEEecC
Q 032051 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVNQLHV 148 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~l-g~~~kPv~l~n~ 148 (148)
.++....++.+|.+|+++=.. .+.-+..+.+. ...+.|++++|.
T Consensus 146 ~~~a~~~~~~aDlllviGTSl----~V~pa~~l~~~~~~~g~~vi~iN~ 190 (206)
T cd01410 146 WMGAAAAACRADLFLCLGTSL----QVTPAANLPLKAARAGGRLVIVNL 190 (206)
T ss_pred HHHHHHHHhcCCEEEEECcCc----eehhHHHHHHHHHhcCCeEEEECC
Confidence 456777788899999975432 22222222221 135799999984
No 307
>PRK08862 short chain dehydrogenase; Provisional
Probab=26.21 E-value=1.1e+02 Score=23.64 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=25.2
Q ss_pred CeEEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 47 ~~lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
..+|+||+. |+=.++++...+.|-.++.+
T Consensus 7 ~~lVtGas~-GIG~aia~~la~~G~~V~~~ 35 (227)
T PRK08862 7 IILITSAGS-VLGRTISCHFARLGATLILC 35 (227)
T ss_pred EEEEECCcc-HHHHHHHHHHHHCCCEEEEE
Confidence 568999877 99999999999999887776
No 308
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=26.21 E-value=53 Score=22.46 Aligned_cols=53 Identities=13% Similarity=0.106 Sum_probs=25.5
Q ss_pred HHHHHhhcCCeEEEEeCCcccccccC--------CCCCceeeecCCHHHHHHHHHHcCCEEEE
Q 032051 62 VSHVVHRGGGHVLGIIPKTLMNKEIT--------GETVGEVKPVADMHQRKAEMARNSDCFIA 116 (148)
Q Consensus 62 ~~~gA~~~GG~viGv~p~~~~~~e~~--------~~~~~~~~~~~~~~~R~~~~v~~sda~Iv 116 (148)
+.-|+.++||..+=.+|....-.... .+++. ...+.|..|-...+.++..+++
T Consensus 30 a~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~--~~~~~F~~rf~~~L~~~~~i~i 90 (92)
T PF08351_consen 30 ALAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYT--DVTPRFIRRFIRSLQSDPGIII 90 (92)
T ss_dssp HHHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS---B--HHHHHHHHHHHCCSTTS--
T ss_pred HHhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCC--cccHHHHHHHHHHHHHCcCCcc
Confidence 45567788999998888643211111 11121 3344567777777776665544
No 309
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.20 E-value=3.2e+02 Score=21.30 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
+|+|+..+. .++.+.+....+-+.+.++|+.++
T Consensus 1 ~i~~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~ 33 (294)
T cd06316 1 KAAIVMHTS--GSDWSNAQVRGAKDEFAKLGIEVV 33 (294)
T ss_pred CeEEEecCC--CChHHHHHHHHHHHHHHHcCCEEE
Confidence 356665332 234445666667777777888765
No 310
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=25.99 E-value=1.8e+02 Score=22.79 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=19.5
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHhCCCe--EEEcC
Q 032051 20 FCGSSTGKRNCYRDAALDLGQELVSKKLD--LVYGG 53 (148)
Q Consensus 20 ~ggs~~~~~~~~~~~A~~lG~~lA~~g~~--lv~GG 53 (148)
||||...+.+...+.++++.+.. +.|+. +|.||
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l~-~~g~~~viV~sg 40 (239)
T cd04246 6 FGGTSVADIERIKRVAERIKKAV-KKGYQVVVVVSA 40 (239)
T ss_pred ECccccCCHHHHHHHHHHHHHHH-HcCCCEEEEECC
Confidence 78888765445566666665543 44443 55664
No 311
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=25.93 E-value=43 Score=29.18 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEcCCC----------CChHHHHHHHHhhcCCeEEE
Q 032051 32 RDAALDLGQELVSKKLDLVYGGGS----------VGLMGLVSHVVHRGGGHVLG 75 (148)
Q Consensus 32 ~~~A~~lG~~lA~~g~~lv~GGG~----------~GlM~a~~~gA~~~GG~viG 75 (148)
.+-|+.|++.|.++|+.|++||-. .|+-+.-+.-+++.-|.++-
T Consensus 306 v~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vn 359 (399)
T PF00464_consen 306 VKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVN 359 (399)
T ss_dssp HHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-E
T ss_pred HHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeec
Confidence 355777888888999999987522 25666666677777776654
No 312
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=25.92 E-value=1.2e+02 Score=23.39 Aligned_cols=10 Identities=40% Similarity=0.670 Sum_probs=6.1
Q ss_pred CCEEEEecCc
Q 032051 111 SDCFIALPGG 120 (148)
Q Consensus 111 sda~IvlpGG 120 (148)
-|++|-..|-
T Consensus 80 id~li~~Ag~ 89 (262)
T TIGR03325 80 IDCLIPNAGI 89 (262)
T ss_pred CCEEEECCCC
Confidence 4666666653
No 313
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=25.84 E-value=1.1e+02 Score=22.18 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=21.0
Q ss_pred CCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 12 ~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
....+|+|+|.-+.+ ..|++.|.+.||.|+
T Consensus 8 ~~~l~I~iIGaGrVG---------~~La~aL~~ag~~v~ 37 (127)
T PF10727_consen 8 AARLKIGIIGAGRVG---------TALARALARAGHEVV 37 (127)
T ss_dssp ----EEEEECTSCCC---------CHHHHHHHHTTSEEE
T ss_pred CCccEEEEECCCHHH---------HHHHHHHHHCCCeEE
Confidence 345689999876665 468888999999864
No 314
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.76 E-value=2e+02 Score=21.95 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEE
Q 032051 29 NCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 29 ~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
+.+.+....+-+.+.+.|+.++.
T Consensus 12 ~~~~~~~~~i~~~a~~~g~~~~~ 34 (269)
T cd06281 12 PLLAQLFSGAEDRLRAAGYSLLI 34 (269)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEE
Confidence 44445555555556666776554
No 315
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=25.75 E-value=1.7e+02 Score=23.36 Aligned_cols=31 Identities=10% Similarity=0.206 Sum_probs=22.3
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG 53 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (148)
|++++++|--+ .-..|++.+++.||.++.|.
T Consensus 1 m~~~~i~GtGn---------iG~alA~~~a~ag~eV~igs 31 (211)
T COG2085 1 MMIIAIIGTGN---------IGSALALRLAKAGHEVIIGS 31 (211)
T ss_pred CcEEEEeccCh---------HHHHHHHHHHhCCCeEEEec
Confidence 46777775332 23567888899999999985
No 316
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=25.75 E-value=78 Score=24.64 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhC-CCCCcEEEecC
Q 032051 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVNQLHV 148 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg-~~~kPv~l~n~ 148 (148)
.++...-++.+|.+|+++ |=-.+.-++.+.+.- ..+.|++++|.
T Consensus 158 ~~~a~~~~~~~Dl~lvlG----TSl~V~p~~~l~~~~~~~~~~~i~iN~ 202 (218)
T cd01407 158 LDEAAEALAKADLLLVIG----TSLQVYPAAGLPLYAPERGAPVVIINL 202 (218)
T ss_pred HHHHHHHHhcCCEEEEeC----CCcccccHHHHHHHHHHCCCeEEEECC
Confidence 445555566799999987 333333333333322 36899999984
No 317
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.70 E-value=1.9e+02 Score=21.91 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=20.3
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 17 VCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 17 V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
|+|+..+. .++-+.+..+.+-+.+.++|+.++.
T Consensus 2 i~~~~~~~--~~~~~~~~~~~i~~~~~~~g~~~~i 34 (267)
T cd06322 2 IGASLLTQ--QHPFYIELANAMKEEAKKQKVNLIV 34 (267)
T ss_pred eeEeecCc--ccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 56665332 2455566666666777777777654
No 318
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=25.67 E-value=1.1e+02 Score=24.91 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=23.3
Q ss_pred cCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 11 MSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 11 ~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
|++|+.|+|++-...+ . .-.+.-|+..||+.|+.+
T Consensus 1 ~~~~~~iai~~KGGvG--K--Tt~~~nLa~~la~~g~kV 35 (295)
T PRK13234 1 MSKLRQIAFYGKGGIG--K--STTSQNTLAALVEMGQKI 35 (295)
T ss_pred CCcceEEEEECCCCcc--H--HHHHHHHHHHHHHCCCeE
Confidence 4677889987332333 2 235778888899888875
No 319
>PRK07063 short chain dehydrogenase; Provisional
Probab=25.57 E-value=1.3e+02 Score=23.13 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=15.1
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
++|.|.|+++ + ..+++.+.|+++|+.|+
T Consensus 8 k~vlVtGas~-g-------IG~~~a~~l~~~G~~vv 35 (260)
T PRK07063 8 KVALVTGAAQ-G-------IGAAIARAFAREGAAVA 35 (260)
T ss_pred CEEEEECCCc-h-------HHHHHHHHHHHCCCEEE
Confidence 4566665443 1 23455556666666654
No 320
>PRK07791 short chain dehydrogenase; Provisional
Probab=25.52 E-value=1.2e+02 Score=24.14 Aligned_cols=16 Identities=6% Similarity=0.011 Sum_probs=8.9
Q ss_pred HHHHHHHHhCCCeEEE
Q 032051 36 LDLGQELVSKKLDLVY 51 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~ 51 (148)
+++++.|+++|+.++.
T Consensus 20 ~aia~~la~~G~~vii 35 (286)
T PRK07791 20 RAHALAFAAEGARVVV 35 (286)
T ss_pred HHHHHHHHHCCCEEEE
Confidence 4455555666666543
No 321
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=25.40 E-value=1.5e+02 Score=22.88 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=0.0
Q ss_pred hhccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 8 AKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 8 ~~~~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
|+..-+.+++.|.|+++ -..+++++.|+++|+.++
T Consensus 1 ~~~~~~~k~~lItGa~~--------gIG~~ia~~l~~~G~~vv 35 (261)
T PRK08936 1 MYSDLEGKVVVITGGST--------GLGRAMAVRFGKEKAKVV 35 (261)
T ss_pred CccCCCCCEEEEeCCCC--------hHHHHHHHHHHHCCCEEE
No 322
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=25.39 E-value=1e+02 Score=24.00 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHh-CCCCCcEEEecC
Q 032051 102 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVNQLHV 148 (148)
Q Consensus 102 ~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~l-g~~~kPv~l~n~ 148 (148)
++....++.+|.+|+++ -.++. .-++.+.+. ...+.|++++|.
T Consensus 156 ~~~~~~~~~~dl~lvlG-Tsl~v---~p~~~l~~~~~~~~~~~i~iN~ 199 (224)
T cd01412 156 LEAVEALAKADLFLVIG-TSGVV---YPAAGLPEEAKERGARVIEINP 199 (224)
T ss_pred HHHHHHHHcCCEEEEEC-cCccc---hhHHHHHHHHHHCCCeEEEECC
Confidence 44555667899999976 22333 333333332 135889999984
No 323
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=25.37 E-value=3.8e+02 Score=24.44 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=26.9
Q ss_pred CCCeEEEcCCCCChHHHHHHHHhh------cCCeEEEEeC
Q 032051 45 KKLDLVYGGGSVGLMGLVSHVVHR------GGGHVLGIIP 78 (148)
Q Consensus 45 ~g~~lv~GGG~~GlM~a~~~gA~~------~GG~viGv~p 78 (148)
..+.|++.||+.-.|-++..|+.+ .+.+++|+.-
T Consensus 71 ~~IgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~ 110 (555)
T PRK07085 71 LKVGVILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIG 110 (555)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 467788888999899999888754 5778999863
No 324
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.28 E-value=3.8e+02 Score=21.89 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=20.1
Q ss_pred CCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeC
Q 032051 46 KLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIP 78 (148)
Q Consensus 46 g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p 78 (148)
.+.++.|| . |.+-.+++ ....+-.++||-.
T Consensus 59 d~vi~iGG-D-GTlL~a~~-~~~~~~pi~gIn~ 88 (277)
T PRK03708 59 DFIIAIGG-D-GTILRIEH-KTKKDIPILGINM 88 (277)
T ss_pred CEEEEEeC-c-HHHHHHHH-hcCCCCeEEEEeC
Confidence 56666664 6 88877777 6666667777743
No 325
>PRK00625 shikimate kinase; Provisional
Probab=25.17 E-value=3e+02 Score=20.68 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=38.8
Q ss_pred HHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCC--cccccccCCCCCce----e-eecCCHHHHHHHHHHcC
Q 032051 39 GQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPK--TLMNKEITGETVGE----V-KPVADMHQRKAEMARNS 111 (148)
Q Consensus 39 G~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~--~~~~~e~~~~~~~~----~-~~~~~~~~R~~~~v~~s 111 (148)
-+.+...+..+.+|||. ++..-+...+..+|.++-+-.. ....+ ....++.+ . .+..-+.+|....-+.|
T Consensus 67 l~~l~~~~~VIs~GGg~--~~~~e~~~~l~~~~~Vv~L~~~~e~l~~R-l~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~a 143 (173)
T PRK00625 67 LTSLPVIPSIVALGGGT--LMIEPSYAHIRNRGLLVLLSLPIATIYQR-LQKRGLPERLKHAPSLEEILSQRIDRMRSIA 143 (173)
T ss_pred HHHhccCCeEEECCCCc--cCCHHHHHHHhcCCEEEEEECCHHHHHHH-HhcCCCCcccCcHHHHHHHHHHHHHHHHHHC
Confidence 34454566667788765 3444444456777877766322 11110 11111111 0 11122467777776679
Q ss_pred CEEEEe
Q 032051 112 DCFIAL 117 (148)
Q Consensus 112 da~Ivl 117 (148)
|..|-.
T Consensus 144 d~~i~~ 149 (173)
T PRK00625 144 DYIFSL 149 (173)
T ss_pred CEEEeC
Confidence 998743
No 326
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=25.03 E-value=1.2e+02 Score=25.20 Aligned_cols=32 Identities=13% Similarity=0.421 Sum_probs=19.4
Q ss_pred cCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 110 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 110 ~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.+|.+|+++||. .--+.-..++ ..+.|++.+.
T Consensus 80 ~~d~IIaiGGGs--v~D~aK~iA~----~~gip~I~VP 111 (332)
T cd08549 80 DTEFLLGIGSGT--IIDLVKFVSF----KVGKPFISVP 111 (332)
T ss_pred CCCEEEEECCcH--HHHHHHHHHH----HcCCCEEEeC
Confidence 899999999985 2222222222 1367887664
No 327
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=24.99 E-value=3.7e+02 Score=22.25 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=9.8
Q ss_pred HHHhhcCCeEEEEeC
Q 032051 64 HVVHRGGGHVLGIIP 78 (148)
Q Consensus 64 ~gA~~~GG~viGv~p 78 (148)
.++...||.++.+-+
T Consensus 59 ~A~~~LGg~~i~l~~ 73 (304)
T TIGR00658 59 VAAYQLGGHPLYLNP 73 (304)
T ss_pred HHHHHcCCCEEEeCC
Confidence 345567888887744
No 328
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=24.97 E-value=2.2e+02 Score=21.77 Aligned_cols=37 Identities=11% Similarity=-0.032 Sum_probs=22.2
Q ss_pred HHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 105 ~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.++-...|++|+.|...-..+|....+ .. +.|+++++
T Consensus 50 ~l~~~~vDgiIi~~~~~~~~~~~l~~~-----~~-~ipvV~~~ 86 (271)
T cd06314 50 DLIAEGVDGIAISPIDPKAVIPALNKA-----AA-GIKLITTD 86 (271)
T ss_pred HHHhcCCCEEEEecCChhHhHHHHHHH-----hc-CCCEEEec
Confidence 344457899999985533233443322 23 68998886
No 329
>PRK08105 flavodoxin; Provisional
Probab=24.97 E-value=1.9e+02 Score=21.15 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=14.3
Q ss_pred EEcCCC------CChHHHHHHHHhhcCCeEEE
Q 032051 50 VYGGGS------VGLMGLVSHVVHRGGGHVLG 75 (148)
Q Consensus 50 v~GGG~------~GlM~a~~~gA~~~GG~viG 75 (148)
|.|-|. .+.+..+.+-..+.|++.++
T Consensus 89 vfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 89 VIALGDSSYDNFCGAGKQFDALLQEQGAKRVG 120 (149)
T ss_pred EEeeecCCHHHHHHHHHHHHHHHHHCCCeEee
Confidence 556655 23444444444456777766
No 330
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=24.95 E-value=3.5e+02 Score=21.37 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=14.2
Q ss_pred CCChHHHHHHHHhhcCCe
Q 032051 55 SVGLMGLVSHVVHRGGGH 72 (148)
Q Consensus 55 ~~GlM~a~~~gA~~~GG~ 72 (148)
++=.|.-++++.+..||.
T Consensus 16 ~~~~~~~~a~~~~~~g~~ 33 (242)
T cd01170 16 NYVVMNFVANVLLAIGAS 33 (242)
T ss_pred chhhHhHHHHHHHHhCCc
Confidence 446788889999988874
No 331
>PRK13055 putative lipid kinase; Reviewed
Probab=24.92 E-value=59 Score=27.03 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=16.4
Q ss_pred CCEEEEecCchhhHHHHHHHHH
Q 032051 111 SDCFIALPGGYGTLEELLEVIT 132 (148)
Q Consensus 111 sda~IvlpGG~GTL~El~~~~~ 132 (148)
.| .|+.-||=||++|+...+.
T Consensus 60 ~d-~vvv~GGDGTl~evvngl~ 80 (334)
T PRK13055 60 FD-LIIAAGGDGTINEVVNGIA 80 (334)
T ss_pred CC-EEEEECCCCHHHHHHHHHh
Confidence 35 4556799999999998773
No 332
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=24.81 E-value=4.2e+02 Score=22.28 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=10.7
Q ss_pred cCCEEEEecCch
Q 032051 110 NSDCFIALPGGY 121 (148)
Q Consensus 110 ~sda~IvlpGG~ 121 (148)
.+|.+|+++||.
T Consensus 81 ~~D~IIaiGGGS 92 (347)
T cd08184 81 LPCAIVGIGGGS 92 (347)
T ss_pred CCCEEEEeCCcH
Confidence 689999999985
No 333
>PRK06180 short chain dehydrogenase; Provisional
Probab=24.78 E-value=1.2e+02 Score=23.82 Aligned_cols=31 Identities=19% Similarity=0.020 Sum_probs=18.5
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
.++|.|.|+++ -..+.+.+.|+++|+.|+..
T Consensus 4 ~~~vlVtGasg--------giG~~la~~l~~~G~~V~~~ 34 (277)
T PRK06180 4 MKTWLITGVSS--------GFGRALAQAALAAGHRVVGT 34 (277)
T ss_pred CCEEEEecCCC--------hHHHHHHHHHHhCcCEEEEE
Confidence 35677776655 13455666667777776544
No 334
>PRK06139 short chain dehydrogenase; Provisional
Probab=24.75 E-value=3.2e+02 Score=22.53 Aligned_cols=61 Identities=15% Similarity=0.072 Sum_probs=0.0
Q ss_pred hhccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 8 AKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 8 ~~~~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
|...-+.++|.|.|+|+ -..+++.+.|+++|+.|+.-+-..--.+.+.+...+.|.++..+
T Consensus 1 ~~~~l~~k~vlITGAs~--------GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~ 61 (330)
T PRK06139 1 MMGPLHGAVVVITGASS--------GIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVV 61 (330)
T ss_pred CCcCCCCCEEEEcCCCC--------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
No 335
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=24.70 E-value=3.7e+02 Score=22.33 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=11.4
Q ss_pred HHHHhhcCCeEEEEeCC
Q 032051 63 SHVVHRGGGHVLGIIPK 79 (148)
Q Consensus 63 ~~gA~~~GG~viGv~p~ 79 (148)
-.++.+.||.++.+-|.
T Consensus 64 e~A~~~LGg~~i~l~~~ 80 (305)
T PRK00856 64 ELAAKRLGADVINFSAS 80 (305)
T ss_pred HHHHHHcCCcEEEeCCC
Confidence 34556678888877654
No 336
>PRK07814 short chain dehydrogenase; Provisional
Probab=24.67 E-value=1.4e+02 Score=23.17 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=17.2
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
+++.|.|+++- ...++++.|+++|+.|+.
T Consensus 11 ~~vlItGasgg--------IG~~~a~~l~~~G~~Vi~ 39 (263)
T PRK07814 11 QVAVVTGAGRG--------LGAAIALAFAEAGADVLI 39 (263)
T ss_pred CEEEEECCCCh--------HHHHHHHHHHHCCCEEEE
Confidence 56666665441 335566666677777653
No 337
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=24.60 E-value=1.4e+02 Score=23.03 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=18.8
Q ss_pred CCeEEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 46 KLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 46 g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
...||+||+. |+=.++++...+.|-+++.+
T Consensus 10 k~vlItG~s~-gIG~~la~~l~~~G~~v~~~ 39 (266)
T PRK06171 10 KIIIVTGGSS-GIGLAIVKELLANGANVVNA 39 (266)
T ss_pred CEEEEeCCCC-hHHHHHHHHHHHCCCEEEEE
Confidence 3456666644 77677777666666666655
No 338
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=24.37 E-value=3.6e+02 Score=25.39 Aligned_cols=47 Identities=13% Similarity=0.040 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEe
Q 032051 30 CYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 30 ~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~ 77 (148)
.|...+.=....|+..|+.++++++. ---+.+++.|.+.+..++++.
T Consensus 594 ~H~~ra~fv~~~l~~~GfeV~~~~~~-~s~e~~v~aa~~~~a~ivvlc 640 (714)
T PRK09426 594 GHDRGAKVIATAFADLGFDVDIGPLF-QTPEEAARQAVENDVHVVGVS 640 (714)
T ss_pred chhHhHHHHHHHHHhCCeeEecCCCC-CCHHHHHHHHHHcCCCEEEEe
Confidence 46666666667788899999988755 456788888999999999984
No 339
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=24.33 E-value=1.5e+02 Score=25.15 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=31.7
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCC
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGS 55 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~ 55 (148)
++|.++|.++....-=|..+...|++.|.++|+.+++=+..
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~ 41 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQ 41 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEeccc
Confidence 46888887776655557788999999999999888765533
No 340
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=24.26 E-value=1.3e+02 Score=23.26 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=8.2
Q ss_pred HHHHHHHHhCCCeEEE
Q 032051 36 LDLGQELVSKKLDLVY 51 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~ 51 (148)
+++++.|+++|+.|+.
T Consensus 14 ~aia~~l~~~G~~V~~ 29 (259)
T PRK08340 14 FNVARELLKKGARVVI 29 (259)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 4445555555655443
No 341
>PRK06114 short chain dehydrogenase; Provisional
Probab=24.23 E-value=1.4e+02 Score=23.03 Aligned_cols=30 Identities=13% Similarity=0.031 Sum_probs=19.1
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
+++.|.|+++ -..+.+++.|+++|+.++.-
T Consensus 9 k~~lVtG~s~--------gIG~~ia~~l~~~G~~v~~~ 38 (254)
T PRK06114 9 QVAFVTGAGS--------GIGQRIAIGLAQAGADVALF 38 (254)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEE
Confidence 4666776554 23456677777788887644
No 342
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.21 E-value=2.2e+02 Score=22.63 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=21.7
Q ss_pred HHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 105 ~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.++-...|++|+.|...-.+.+....+ ...+.|||++|
T Consensus 52 ~l~~~~vdgiii~~~~~~~~~~~~~~~-----~~~giPvV~~~ 89 (303)
T cd01539 52 TALAKGVDLLAVNLVDPTAAQTVINKA-----KQKNIPVIFFN 89 (303)
T ss_pred HHHHcCCCEEEEecCchhhHHHHHHHH-----HHCCCCEEEeC
Confidence 345556888888875543334333322 12467888876
No 343
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.20 E-value=1.2e+02 Score=27.08 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=33.2
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE-EEcC-C--CCChHHHHHHHHhhcCCeEEEEeC
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL-VYGG-G--SVGLMGLVSHVVHRGGGHVLGIIP 78 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l-v~GG-G--~~GlM~a~~~gA~~~GG~viGv~p 78 (148)
+.|+|.||....-.+-. -.||.|+..||+. +|== . ..=+|..+..-+-...-.++...|
T Consensus 267 P~V~Ilcgpgnnggdg~-----v~gRHL~~~G~~~vi~~pk~s~~~~~~~~L~~q~~~~~Ip~v~~~~ 329 (453)
T KOG2585|consen 267 PLVAILCGPGNNGGDGL-----VCGRHLAQHGYTPVIYYPKRSLNVDLYKSLVKQCDGFSIPSVSELP 329 (453)
T ss_pred ceEEEEeCCCCccchhH-----HHHHHHHHcCceeEEEeecCccchhHHHHHHHHhcCccccccccCc
Confidence 45999998875433322 2889999999764 3311 0 125666666555333333344444
No 344
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.15 E-value=1.8e+02 Score=23.02 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=18.1
Q ss_pred cCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 110 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 110 ~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
..|++|+.|.-. ..++....+ ...+.||+++|
T Consensus 58 ~vdgiIi~~~~~-~~~~~~~~~-----~~~giPvV~~~ 89 (305)
T cd06324 58 KPDALIFTNEKS-VAPELLRLA-----EGAGVKLFLVN 89 (305)
T ss_pred CCCEEEEcCCcc-chHHHHHHH-----HhCCCeEEEEe
Confidence 688888876533 333432222 12467888776
No 345
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=24.11 E-value=1.2e+02 Score=24.72 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=10.8
Q ss_pred HHHHHHHHhCCCeEEEcCCC
Q 032051 36 LDLGQELVSKKLDLVYGGGS 55 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~GGG~ 55 (148)
++.++.|++.|+.|+-.|-.
T Consensus 20 ~A~A~~l~~~G~~vvl~aRR 39 (246)
T COG4221 20 EATARALAEAGAKVVLAARR 39 (246)
T ss_pred HHHHHHHHHCCCeEEEEecc
Confidence 34455556666666655433
No 346
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.03 E-value=1.4e+02 Score=22.47 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=7.1
Q ss_pred HHHHHHHHhCCCeEE
Q 032051 36 LDLGQELVSKKLDLV 50 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv 50 (148)
..+++.|+++|+.++
T Consensus 19 ~~~a~~l~~~G~~vi 33 (253)
T PRK08217 19 RAMAEYLAQKGAKLA 33 (253)
T ss_pred HHHHHHHHHCCCEEE
Confidence 334444455555543
No 347
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=24.03 E-value=3.4e+02 Score=23.27 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=35.1
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe-EEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 17 VCVFCGSSTGKRNCYRDAALDLGQELVSKKLD-LVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 17 V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~-lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
=++.++||..... -.+...+..+-|.++|+. ||.=||. |-+..+..=+-+.+=.+||+
T Consensus 66 GT~lgssR~~~~~-~~e~~~~~~~~l~~~gId~LvvIGGD-gS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 66 GTFLGSARFPEFK-TEEGRKVAAENLKKLGIDALVVIGGD-GSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred CeEEeeCCCCCcc-cHHHHHHHHHHHHHcCCCEEEEECCC-ChHHHHHHHHHhcCCcEEec
Confidence 3567888865421 122223555667777665 3444457 77776666566666788998
No 348
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=23.96 E-value=3.9e+02 Score=22.62 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=26.9
Q ss_pred HHHhhcCCeEEEEeCCcccccccCCCCCceeeecCCHHHHHHHHHHcCCEEEEecCchhhHHHHHH
Q 032051 64 HVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLE 129 (148)
Q Consensus 64 ~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~El~~ 129 (148)
.++.+.||.++.+-+.... +-.-.++.+=-+.+-..+|++++=.-..+++.|+..
T Consensus 65 ~A~~~LGg~~i~l~~~~s~-----------~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~a~ 119 (336)
T PRK03515 65 VAAYDQGARVTYLGPSGSQ-----------IGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAE 119 (336)
T ss_pred HHHHHcCCcEEEeCCcccc-----------CCCCCCHHHHHHHHHHhCcEEEEEeCChHHHHHHHH
Confidence 4455678888887443210 011123333333444445555555555555555543
No 349
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=23.89 E-value=1.8e+02 Score=22.47 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=20.9
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHh-CCCeEEEcCCC
Q 032051 20 FCGSSTGKRNCYRDAALDLGQELVS-KKLDLVYGGGS 55 (148)
Q Consensus 20 ~ggs~~~~~~~~~~~A~~lG~~lA~-~g~~lv~GGG~ 55 (148)
||||...+.+.+.+.++++.++-.. ....+|.|||.
T Consensus 4 iGGs~l~~~~~~~~~~~~i~~l~~~~~~~viV~ggg~ 40 (248)
T cd02115 4 FGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGP 40 (248)
T ss_pred eCccccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 6787775444455555555543211 24567888877
No 350
>PRK06455 riboflavin synthase; Provisional
Probab=23.88 E-value=1.3e+02 Score=22.96 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=25.8
Q ss_pred HcCCEEEEec--CchhhHHHHHHHHH--HHHhC-CCCCcEEEe
Q 032051 109 RNSDCFIALP--GGYGTLEELLEVIT--WAQLG-IHDKPVNQL 146 (148)
Q Consensus 109 ~~sda~Ivlp--GG~GTL~El~~~~~--~~~lg-~~~kPv~l~ 146 (148)
...|++|+|+ |..-|-+-+....+ ++++. ..++||+.+
T Consensus 55 ~~yDaVIaLG~VG~t~h~d~Va~~vS~GL~~lsL~t~~PVi~v 97 (155)
T PRK06455 55 EGCDIVMALGMPGPTEKDKYCAHEASIGLIMAQLMTNKHIIEV 97 (155)
T ss_pred CCCCEEEEecceeccCcchhHHHHHHHHHHHHHhhhCCCEEEE
Confidence 4699999995 77777655544433 34455 379999875
No 351
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=23.86 E-value=3.6e+02 Score=22.33 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=11.6
Q ss_pred HHHHhhcCCeEEEEeCC
Q 032051 63 SHVVHRGGGHVLGIIPK 79 (148)
Q Consensus 63 ~~gA~~~GG~viGv~p~ 79 (148)
-.++.+.||.++.+-|.
T Consensus 62 e~A~~~LGg~~i~l~~~ 78 (304)
T PRK00779 62 EVGMAQLGGHAIFLSPR 78 (304)
T ss_pred HHHHHHcCCcEEEECcc
Confidence 34566678888888543
No 352
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=23.79 E-value=1.4e+02 Score=24.27 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=34.0
Q ss_pred eeecCCHHHHHHHHHHcCCEEEEec---CchhhHHHHHHHHHH--HHhC--CCCCcEEE
Q 032051 94 VKPVADMHQRKAEMARNSDCFIALP---GGYGTLEELLEVITW--AQLG--IHDKPVNQ 145 (148)
Q Consensus 94 ~~~~~~~~~R~~~~v~~sda~Ivlp---GG~GTL~El~~~~~~--~~lg--~~~kPv~l 145 (148)
++.+++-.+|..++++.||.||-+- |-.||-+-+-+.+.. .++. ...+|+.+
T Consensus 154 LvaPsTtdeRmell~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAV 212 (268)
T KOG4175|consen 154 LVAPSTTDERMELLVEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAV 212 (268)
T ss_pred eeCCCChHHHHHHHHHhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeE
Confidence 4456788999999999999999884 666665544444321 1222 13677653
No 353
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=23.77 E-value=1e+02 Score=21.68 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=24.3
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
+.++.+|||.-+..-.. |...++.+-+.|.+.|..++.
T Consensus 86 ~~~~~avfg~Gd~~~~~-f~~~~k~l~~~l~~~G~~~~~ 123 (143)
T PF00258_consen 86 KGKKYAVFGLGDSGYGG-FCAAAKKLDERLEELGAKRVG 123 (143)
T ss_dssp TTCEEEEEEEEETTSST-TTHHHHHHHHHHHHTTEEEES
T ss_pred ccceeeeeecCCccchh-hhhHHHHHHHHHHHCCCEEEE
Confidence 44567777422221122 778888888888888887763
No 354
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=23.69 E-value=1e+02 Score=26.11 Aligned_cols=90 Identities=21% Similarity=0.193 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCC-Cceeeec--CCHHHHHHH
Q 032051 30 CYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGET-VGEVKPV--ADMHQRKAE 106 (148)
Q Consensus 30 ~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~-~~~~~~~--~~~~~R~~~ 106 (148)
...+..+.+++..-...+.+++|+|. +-..+++--.+.|-.++.|-.+...-.+..... -..++.. .+...-++.
T Consensus 216 ~l~~~~~~~~~~~~~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~ 293 (453)
T PRK09496 216 HIRAVMSEFGRLEKPVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEE 293 (453)
T ss_pred HHHHHHHHhCccCCCCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhc
Confidence 34445555554332357788999865 445566655556778877733211000111111 1122322 233444455
Q ss_pred HHHcCCEEEEecCch
Q 032051 107 MARNSDCFIALPGGY 121 (148)
Q Consensus 107 ~v~~sda~IvlpGG~ 121 (148)
-++.+|++|++...-
T Consensus 294 ~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 294 GIDEADAFIALTNDD 308 (453)
T ss_pred CCccCCEEEECCCCc
Confidence 678899999887764
No 355
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=23.53 E-value=1.2e+02 Score=24.57 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=20.8
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG 53 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (148)
.+|+++-|++.+.. +.+++.||+.|..++..+
T Consensus 8 gkvalVTG~s~GIG-------~aia~~la~~Ga~v~i~~ 39 (270)
T KOG0725|consen 8 GKVALVTGGSSGIG-------KAIALLLAKAGAKVVITG 39 (270)
T ss_pred CcEEEEECCCChHH-------HHHHHHHHHCCCEEEEEe
Confidence 45555555665533 667777888888876554
No 356
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=23.48 E-value=82 Score=23.58 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=5.1
Q ss_pred HcCCEEEEec
Q 032051 109 RNSDCFIALP 118 (148)
Q Consensus 109 ~~sda~Ivlp 118 (148)
+.+|.+|++-
T Consensus 63 ~~~D~lval~ 72 (170)
T PRK08338 63 TKADVLVALH 72 (170)
T ss_pred CCCCEEEEcC
Confidence 4455555553
No 357
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=23.31 E-value=1.6e+02 Score=20.24 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 31 YRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 31 ~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
+..=.-.|++.|.++||.|..+... ..-+.+ .+.|-..+-+
T Consensus 11 hv~P~lala~~L~~rGh~V~~~~~~-~~~~~v----~~~Gl~~~~~ 51 (139)
T PF03033_consen 11 HVYPFLALARALRRRGHEVRLATPP-DFRERV----EAAGLEFVPI 51 (139)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEETG-GGHHHH----HHTT-EEEES
T ss_pred HHHHHHHHHHHHhccCCeEEEeecc-cceecc----cccCceEEEe
Confidence 3455678999999999999777644 554444 3345444443
No 358
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=23.29 E-value=2.8e+02 Score=20.89 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=19.6
Q ss_pred HHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 105 ~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.++-...|++|+.|-......+....+ ...+.|+++++
T Consensus 50 ~~~~~~~dgii~~~~~~~~~~~~l~~l-----~~~~ipvv~~~ 87 (268)
T cd06323 50 DLITRGVDAIIINPTDSDAVVPAVKAA-----NEAGIPVFTID 87 (268)
T ss_pred HHHHcCCCEEEEcCCChHHHHHHHHHH-----HHCCCcEEEEc
Confidence 344457888888653322212222222 12467888775
No 359
>PRK05867 short chain dehydrogenase; Provisional
Probab=23.22 E-value=3.4e+02 Score=20.66 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=19.7
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG 53 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (148)
+++.|.|+++ -...++.+.|+++|+.|+..+
T Consensus 10 k~vlVtGas~--------gIG~~ia~~l~~~G~~V~~~~ 40 (253)
T PRK05867 10 KRALITGAST--------GIGKRVALAYVEAGAQVAIAA 40 (253)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEc
Confidence 4667776544 234667777778888876543
No 360
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=23.20 E-value=2.2e+02 Score=24.09 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=11.5
Q ss_pred HcCCEEEEecCch
Q 032051 109 RNSDCFIALPGGY 121 (148)
Q Consensus 109 ~~sda~IvlpGG~ 121 (148)
..+|.+|+++||.
T Consensus 78 ~~~D~IIaiGGGS 90 (386)
T cd08191 78 AGPDVIIGLGGGS 90 (386)
T ss_pred cCCCEEEEeCCch
Confidence 5789999999986
No 361
>PRK10537 voltage-gated potassium channel; Provisional
Probab=23.20 E-value=4.9e+02 Score=22.45 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=48.7
Q ss_pred CCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCceeeec--CCHHHHHHHHHHcCCEEEEecCchh
Q 032051 45 KKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPV--ADMHQRKAEMARNSDCFIALPGGYG 122 (148)
Q Consensus 45 ~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~~~~~--~~~~~R~~~~v~~sda~IvlpGG~G 122 (148)
++|.+++|.|. +=+.+.+.-.+.|-+++-|.++.. .+...+.+ +.+.. ++...=++.=++.||++|++..--
T Consensus 240 k~HvII~G~g~--lg~~v~~~L~~~g~~vvVId~d~~--~~~~~~g~-~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD- 313 (393)
T PRK10537 240 KDHFIICGHSP--LAINTYLGLRQRGQAVTVIVPLGL--EHRLPDDA-DLIPGDSSDSAVLKKAGAARARAILALRDND- 313 (393)
T ss_pred CCeEEEECCCh--HHHHHHHHHHHCCCCEEEEECchh--hhhccCCC-cEEEeCCCCHHHHHhcCcccCCEEEEcCCCh-
Confidence 68999999755 335566766667777877765421 11111111 23322 333334444577899999987642
Q ss_pred hHHHHHHHHHHHHhC
Q 032051 123 TLEELLEVITWAQLG 137 (148)
Q Consensus 123 TL~El~~~~~~~~lg 137 (148)
-+-++.+++.++++
T Consensus 314 -~~Nl~ivL~ar~l~ 327 (393)
T PRK10537 314 -ADNAFVVLAAKEMS 327 (393)
T ss_pred -HHHHHHHHHHHHhC
Confidence 22344556666666
No 362
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=23.15 E-value=1.6e+02 Score=23.17 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=13.2
Q ss_pred HHHHHHHHHhCCCeEEEcCCC
Q 032051 35 ALDLGQELVSKKLDLVYGGGS 55 (148)
Q Consensus 35 A~~lG~~lA~~g~~lv~GGG~ 55 (148)
-+++++.+.+.|..+|.|..+
T Consensus 205 q~~~a~~lidaGaDiIiG~Hp 225 (250)
T PF09587_consen 205 QRELARALIDAGADIIIGHHP 225 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCC
Confidence 355666666667776666654
No 363
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=23.13 E-value=1.5e+02 Score=22.90 Aligned_cols=16 Identities=6% Similarity=0.098 Sum_probs=9.5
Q ss_pred HHHHHHHHhCCCeEEE
Q 032051 36 LDLGQELVSKKLDLVY 51 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~ 51 (148)
.++++.|+++|+.|+.
T Consensus 20 ~~ia~~l~~~G~~V~~ 35 (263)
T PRK06200 20 RALVERFLAEGARVAV 35 (263)
T ss_pred HHHHHHHHHCCCEEEE
Confidence 4555566666766543
No 364
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=23.12 E-value=4.1e+02 Score=21.52 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=20.8
Q ss_pred HHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 107 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 107 ~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.-...|++|++|...-..++..+.+ ...+.|++++|
T Consensus 78 ~~~~vdgiIi~~~~~~~~~~~l~~l-----~~~giPvV~vd 113 (330)
T PRK15395 78 LAKGVKALAINLVDPAAAPTVIEKA-----RGQDVPVVFFN 113 (330)
T ss_pred HHcCCCEEEEeccCHHHHHHHHHHH-----HHCCCcEEEEc
Confidence 3347899888875533334333222 12467888876
No 365
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.10 E-value=2.6e+02 Score=23.80 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=7.2
Q ss_pred HHcCCEEEEecC
Q 032051 108 ARNSDCFIALPG 119 (148)
Q Consensus 108 v~~sda~IvlpG 119 (148)
....|++|+-+|
T Consensus 66 ~~~~d~vv~~~g 77 (450)
T PRK14106 66 LEGVDLVVVSPG 77 (450)
T ss_pred hhcCCEEEECCC
Confidence 345677666555
No 366
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=23.09 E-value=3e+02 Score=19.92 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=32.3
Q ss_pred eEEEEeCCC--CCCChHHHHHHHHHHHHHHhCCCeEE----E-cCCCCChHHHHHH
Q 032051 16 RVCVFCGSS--TGKRNCYRDAALDLGQELVSKKLDLV----Y-GGGSVGLMGLVSH 64 (148)
Q Consensus 16 ~V~V~ggs~--~~~~~~~~~~A~~lG~~lA~~g~~lv----~-GGG~~GlM~a~~~ 64 (148)
.|.+...+. ........+..++|+++|.++|..+- . +.+. |+...++.
T Consensus 70 ~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~K-GiDD~l~~ 124 (130)
T PF12965_consen 70 EVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGK-GIDDLLAA 124 (130)
T ss_pred eEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-CHhHHHHh
Confidence 455554555 22235677888999999999988863 2 4444 88887754
No 367
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.01 E-value=1.6e+02 Score=22.95 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=17.9
Q ss_pred ceEEEEeCCC-CCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 15 KRVCVFCGSS-TGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 15 ~~V~V~ggs~-~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
+.+.|-|+++ .+ .-+++++.|+++|+.|+..
T Consensus 8 k~~lItGa~~s~G-------IG~aia~~la~~G~~v~~~ 39 (257)
T PRK08594 8 KTYVVMGVANKRS-------IAWGIARSLHNAGAKLVFT 39 (257)
T ss_pred CEEEEECCCCCCC-------HHHHHHHHHHHCCCEEEEe
Confidence 4566666542 22 2255666667777777654
No 368
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=22.98 E-value=88 Score=28.59 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=27.6
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
.+++|.|+.+|..++.+ +.|+++++.+.+.|+.+.
T Consensus 60 ~~~~v~IlygSqTGnae---~lA~~la~~l~~~g~~~~ 94 (600)
T PRK10953 60 EMPGITLISASQTGNAR---RVAEQLRDDLLAAKLNVN 94 (600)
T ss_pred CCCeEEEEEEcCchHHH---HHHHHHHHHHHhCCCCcE
Confidence 35789999999998644 678899998888888753
No 369
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.90 E-value=1.7e+02 Score=22.75 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=9.6
Q ss_pred HHHHHHHHhCCCeEEEc
Q 032051 36 LDLGQELVSKKLDLVYG 52 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~G 52 (148)
+++++.|+++|+.|+..
T Consensus 26 ~a~a~~la~~G~~v~l~ 42 (258)
T PRK07533 26 WGCARAFRALGAELAVT 42 (258)
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 44555556666666443
No 370
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=22.89 E-value=2.5e+02 Score=23.56 Aligned_cols=56 Identities=23% Similarity=0.371 Sum_probs=32.6
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHhCCCe--EEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 18 CVFCGSSTGKRNCYRDAALDLGQELVSKKLD--LVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 18 ~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~--lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
+++++||........+.-++..+.|-+.++. ++.| |. |-|..+.+=+ +.|-.+|||
T Consensus 66 t~LgtsR~~~~~~~~~~~~~~~~~l~~~~Id~LivIG-Gd-gS~~~a~~L~-~~gi~vigi 123 (324)
T TIGR02483 66 TILGSSRTNPFKYEEDGDDKIVANLKELGLDALIAIG-GD-GTLGIARRLA-DKGLPVVGV 123 (324)
T ss_pred ccccCCCCCccccCHHHHHHHHHHHHHcCCCEEEEEC-Cc-hHHHHHHHHH-hcCCCEEee
Confidence 5778887543210112334555666666554 4445 57 8888776532 457788886
No 371
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=22.86 E-value=3.1e+02 Score=22.40 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=30.9
Q ss_pred eeecCCHHHHHHHHHHcCCEEEEecCchhh-------HHHHHHHHHHHHhCCCCCcEEE
Q 032051 94 VKPVADMHQRKAEMARNSDCFIALPGGYGT-------LEELLEVITWAQLGIHDKPVNQ 145 (148)
Q Consensus 94 ~~~~~~~~~R~~~~v~~sda~IvlpGG~GT-------L~El~~~~~~~~lg~~~kPv~l 145 (148)
++.+.+-.+|-..+.+.|+.||-+..-.|+ .+++.+.+...+- ..++||++
T Consensus 146 lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~-~~~~Pv~v 203 (259)
T PF00290_consen 146 LVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKK-HTDLPVAV 203 (259)
T ss_dssp EEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHH-TTSS-EEE
T ss_pred EECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHh-hcCcceEE
Confidence 344567799999999999999988644443 3445554443222 23788864
No 372
>PRK10307 putative glycosyl transferase; Provisional
Probab=22.85 E-value=1.6e+02 Score=24.52 Aligned_cols=35 Identities=6% Similarity=0.060 Sum_probs=22.6
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
++|+++...-.+...-......+|++.|.+.||.+
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V 35 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEV 35 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeE
Confidence 46888864333221122345689999999998886
No 373
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.83 E-value=1.4e+02 Score=23.32 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=18.4
Q ss_pred ceEEEEeCC-CCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 15 KRVCVFCGS-STGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 15 ~~V~V~ggs-~~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
+.+.|-|+| +.+ .-+++++.|+++|+.|+..
T Consensus 7 k~~lITGa~~~~G-------IG~a~a~~l~~~G~~v~~~ 38 (261)
T PRK08690 7 KKILITGMISERS-------IAYGIAKACREQGAELAFT 38 (261)
T ss_pred cEEEEECCCCCCc-------HHHHHHHHHHHCCCEEEEE
Confidence 456666642 222 2356667777888887654
No 374
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=22.83 E-value=1.9e+02 Score=22.81 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCEEEEec--CchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 102 QRKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 102 ~R~~~~v~~sda~Ivlp--GG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
+....++..||+++.-. .|+|. =+.|++. .++||+..|
T Consensus 256 ~~~~~~~~~ad~~l~ps~~e~~g~--~~~Eam~------~g~PvI~~~ 295 (365)
T cd03825 256 ESLALIYSAADVFVVPSLQENFPN--TAIEALA------CGTPVVAFD 295 (365)
T ss_pred HHHHHHHHhCCEEEeccccccccH--HHHHHHh------cCCCEEEec
Confidence 34556788999988753 23332 2556664 489999875
No 375
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=22.79 E-value=1.3e+02 Score=24.18 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=22.1
Q ss_pred cCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 110 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 110 ~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.-.-=|+|.=|..|++|+..++....- ..+.+++++.
T Consensus 111 ~tgkPvIlSTG~stl~EI~~Av~~~~~-~~~~~l~llH 147 (241)
T PF03102_consen 111 KTGKPVILSTGMSTLEEIERAVEVLRE-AGNEDLVLLH 147 (241)
T ss_dssp TT-S-EEEE-TT--HHHHHHHHHHHHH-HCT--EEEEE
T ss_pred HhCCcEEEECCCCCHHHHHHHHHHHHh-cCCCCEEEEe
Confidence 455568899999999999999987621 1367777764
No 376
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=22.79 E-value=2.1e+02 Score=21.66 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=24.9
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
++.++|.|.+..+.. -..+++.+.|.++|+.+.
T Consensus 2 ~~Il~ivG~k~SGKT----TLie~lv~~L~~~G~rVa 34 (161)
T COG1763 2 MKILGIVGYKNSGKT----TLIEKLVRKLKARGYRVA 34 (161)
T ss_pred CcEEEEEecCCCChh----hHHHHHHHHHHhCCcEEE
Confidence 567889988877743 455788888889998774
No 377
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.77 E-value=1.7e+02 Score=22.79 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=10.8
Q ss_pred HHHHHHHHhCCCeEEEc
Q 032051 36 LDLGQELVSKKLDLVYG 52 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~G 52 (148)
+++++.|+++|+.|+..
T Consensus 24 ~a~a~~la~~G~~v~~~ 40 (260)
T PRK06603 24 WAIAQLAKKHGAELWFT 40 (260)
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 45566667777776544
No 378
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=22.76 E-value=5.3e+02 Score=22.71 Aligned_cols=52 Identities=23% Similarity=0.192 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHhCCCeE---EEcCCCCChHHHHHHHHhhcCCeEEEEeCCc
Q 032051 29 NCYRDAALDLGQELVSKKLDL---VYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT 80 (148)
Q Consensus 29 ~~~~~~A~~lG~~lA~~g~~l---v~GGG~~GlM~a~~~gA~~~GG~viGv~p~~ 80 (148)
+-....+.+|-..+-+.--.| |||+|..=+|-.+.+-|++.||.+.=..|..
T Consensus 100 ~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRv 154 (441)
T COG4098 100 PGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRV 154 (441)
T ss_pred hhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcc
Confidence 445667788888887764333 8999999999999999999999887777743
No 379
>KOG4321 consensus Predicted phosphate acyltransferases [Lipid transport and metabolism]
Probab=22.74 E-value=54 Score=25.82 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCEEEEecCchhhHHHHHHH
Q 032051 101 HQRKAEMARNSDCFIALPGGYGTLEELLEV 130 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~GTL~El~~~ 130 (148)
-+|.+++...+|-|++---|+||.+|.|.+
T Consensus 68 lqrerliytigdrflfklpgwgtiseafhv 97 (279)
T KOG4321|consen 68 LQRERLIYTIGDRFLFKLPGWGTISEAFHV 97 (279)
T ss_pred HhhhhheEeecceeEEeCCCccchhhhhcc
Confidence 689999999999999988889999998753
No 380
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=22.70 E-value=2.2e+02 Score=22.44 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=20.0
Q ss_pred HHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 107 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 107 ~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
+-...|++|+.+.-.--++++.+.+. ..+.|++++|
T Consensus 53 ~~~~~DgiIi~~~~~~~~~~~~~~~~-----~~~iPvV~v~ 88 (298)
T cd06302 53 IAQGVDAIAVVPNDPDALEPVLKKAR-----EAGIKVVTHD 88 (298)
T ss_pred HhcCCCEEEEecCCHHHHHHHHHHHH-----HCCCeEEEEc
Confidence 33467888887643222233333321 2467888876
No 381
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.63 E-value=1.6e+02 Score=22.75 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=17.9
Q ss_pred ceEEEEeCCC-CCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 15 KRVCVFCGSS-TGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 15 ~~V~V~ggs~-~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
+.+.|.|+|+ .+ ..+++++.|+++|+.|+..
T Consensus 8 k~~lItGas~~~g-------IG~a~a~~la~~G~~Vi~~ 39 (252)
T PRK06079 8 KKIVVMGVANKRS-------IAWGCAQAIKDQGATVIYT 39 (252)
T ss_pred CEEEEeCCCCCCc-------hHHHHHHHHHHCCCEEEEe
Confidence 4566666552 22 2355666667777776654
No 382
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=22.63 E-value=4.3e+02 Score=23.38 Aligned_cols=50 Identities=28% Similarity=0.335 Sum_probs=29.2
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE-EEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccc
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL-VYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKE 85 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l-v~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e 85 (148)
++|+|+|| . |..... +..|++.||.| +++- ...-||...-=||....+.+
T Consensus 124 ~~VaviGa-G----PAGl~~----a~~L~~~G~~Vtv~e~------------~~~~GGll~yGIP~~kl~k~ 174 (457)
T COG0493 124 KKVAVIGA-G----PAGLAA----ADDLSRAGHDVTVFER------------VALDGGLLLYGIPDFKLPKD 174 (457)
T ss_pred CEEEEECC-C----chHhhh----HHHHHhCCCeEEEeCC------------cCCCceeEEecCchhhccch
Confidence 78999964 3 334333 44578888886 4442 23345555433677766543
No 383
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=22.62 E-value=4.2e+02 Score=21.45 Aligned_cols=66 Identities=14% Similarity=0.233 Sum_probs=40.6
Q ss_pred ceEEEEeCCCCCC---ChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHH--HHHHhhcCCeEEEEeCCccc
Q 032051 15 KRVCVFCGSSTGK---RNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLV--SHVVHRGGGHVLGIIPKTLM 82 (148)
Q Consensus 15 ~~V~V~ggs~~~~---~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~--~~gA~~~GG~viGv~p~~~~ 82 (148)
..|.|.|++.... .++..+..+...+. +.....|+.|-|. +.-+++ ++-|.+.|-.-+-++|..+.
T Consensus 36 ~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~-~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~ 106 (289)
T cd00951 36 AALFAAGGTGEFFSLTPDEYAQVVRAAVEE-TAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLT 106 (289)
T ss_pred CEEEECcCCcCcccCCHHHHHHHHHHHHHH-hCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 4567777655433 33444444444444 3445778877765 766655 45677788888888877664
No 384
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=22.57 E-value=2.3e+02 Score=24.38 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=35.8
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCeEEEcCCC---CChHHHHHHHHhhcCC-eEEEEeC
Q 032051 24 STGKRNCYRDAALDLGQELVSKKLDLVYGGGS---VGLMGLVSHVVHRGGG-HVLGIIP 78 (148)
Q Consensus 24 ~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~---~GlM~a~~~gA~~~GG-~viGv~p 78 (148)
..+.++.+.+.-+.+-..++++|+.||+++|- .++.+++.+=|.+.|= .-|+++.
T Consensus 49 ~~gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~ 107 (362)
T PF07287_consen 49 TKGYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAVVY 107 (362)
T ss_pred CCCchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEE
Confidence 34456667777778888889999999998764 2344445555555553 3355544
No 385
>PRK05867 short chain dehydrogenase; Provisional
Probab=22.56 E-value=1.5e+02 Score=22.67 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=25.5
Q ss_pred CCCeEEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 45 KKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 45 ~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
....||+||+. |+=.++++-..+.|-+++.+
T Consensus 9 ~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~ 39 (253)
T PRK05867 9 GKRALITGAST-GIGKRVALAYVEAGAQVAIA 39 (253)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEE
Confidence 34678999865 99999999999988887766
No 386
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=22.49 E-value=84 Score=25.40 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=23.7
Q ss_pred eeeecCCHHHHHHHHHHcCCEEEEecCchhhHHHHHHH
Q 032051 93 EVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEV 130 (148)
Q Consensus 93 ~~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~El~~~ 130 (148)
.++.++++.+=...+.+. .-|.+-=|.-+|.++...
T Consensus 110 ~~~~v~s~~~a~~~l~~~--~~vllttGsk~l~~f~~~ 145 (248)
T PRK08057 110 RWIEVDDIEEAAEALAPF--RRVLLTTGRQPLAHFAAI 145 (248)
T ss_pred CEEEECCHHHHHHHhhcc--CCEEEecCcchHHHHhhc
Confidence 356677777655555444 456777778888888653
No 387
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=22.46 E-value=2.5e+02 Score=24.36 Aligned_cols=52 Identities=13% Similarity=0.149 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHH---HHh--CCCe-EEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcc
Q 032051 29 NCYRDAALDLGQE---LVS--KKLD-LVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTL 81 (148)
Q Consensus 29 ~~~~~~A~~lG~~---lA~--~g~~-lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~ 81 (148)
+++.+.-.++-+. +.+ ++.. +++|.|. +.|||+.....+-|.+|+-+.-..+
T Consensus 34 ~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt-~amEAav~sl~~pgdkVLv~~nG~F 91 (383)
T COG0075 34 PDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGT-LAMEAAVASLVEPGDKVLVVVNGKF 91 (383)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcH-HHHHHHHHhccCCCCeEEEEeCChH
Confidence 4554444444433 333 3344 5668776 9999999999999999998866544
No 388
>PRK08226 short chain dehydrogenase; Provisional
Probab=22.41 E-value=1.5e+02 Score=22.73 Aligned_cols=31 Identities=6% Similarity=0.049 Sum_probs=21.2
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG 53 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (148)
+++.|.|+++ -..+.+.+.|+++|+.++.=+
T Consensus 7 ~~~lItG~s~--------giG~~la~~l~~~G~~Vv~~~ 37 (263)
T PRK08226 7 KTALITGALQ--------GIGEGIARVFARHGANLILLD 37 (263)
T ss_pred CEEEEeCCCC--------hHHHHHHHHHHHCCCEEEEec
Confidence 5788887665 244667777888898875443
No 389
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=22.37 E-value=1.7e+02 Score=22.82 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCCeEEEcCCC
Q 032051 36 LDLGQELVSKKLDLVYGGGS 55 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~GGG~ 55 (148)
+++++.|++.|..+|.|+.+
T Consensus 195 ~~~A~~l~~~G~DvIiG~H~ 214 (239)
T smart00854 195 RELAHALIDAGADVVIGHHP 214 (239)
T ss_pred HHHHHHHHHcCCCEEEcCCC
Confidence 55666666677777777644
No 390
>PRK07890 short chain dehydrogenase; Provisional
Probab=22.28 E-value=1.7e+02 Score=22.22 Aligned_cols=30 Identities=20% Similarity=0.075 Sum_probs=17.1
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
++|.|.|+++- ..+.+++.|+++|+.|+..
T Consensus 6 k~vlItGa~~~--------IG~~la~~l~~~G~~V~~~ 35 (258)
T PRK07890 6 KVVVVSGVGPG--------LGRTLAVRAARAGADVVLA 35 (258)
T ss_pred CEEEEECCCCc--------HHHHHHHHHHHcCCEEEEE
Confidence 45666665441 3355666666677766543
No 391
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.19 E-value=1.7e+02 Score=23.27 Aligned_cols=17 Identities=6% Similarity=0.270 Sum_probs=10.0
Q ss_pred HHHHHHHHhCCCeEEEc
Q 032051 36 LDLGQELVSKKLDLVYG 52 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~G 52 (148)
+++++.|+++|+.|+..
T Consensus 21 ~aiA~~la~~G~~Vil~ 37 (274)
T PRK08415 21 YGIAKACFEQGAELAFT 37 (274)
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 45555666667666543
No 392
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=22.16 E-value=4e+02 Score=21.10 Aligned_cols=68 Identities=7% Similarity=0.155 Sum_probs=42.7
Q ss_pred ceEEEEeCCCCCC---ChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHH--HHHHhhcCCeEEEEeCCcccc
Q 032051 15 KRVCVFCGSSTGK---RNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLV--SHVVHRGGGHVLGIIPKTLMN 83 (148)
Q Consensus 15 ~~V~V~ggs~~~~---~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~--~~gA~~~GG~viGv~p~~~~~ 83 (148)
..|.+.|++.... .++..+..+...+.. .....|+.|-|....-+++ ++-|.+.|-.-+-++|..+.+
T Consensus 33 ~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~-~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~ 105 (281)
T cd00408 33 DGLVVLGTTGEAPTLTDEERKEVIEAVVEAV-AGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNK 105 (281)
T ss_pred CEEEECCCCcccccCCHHHHHHHHHHHHHHh-CCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCC
Confidence 4577777665443 234444444444443 3457888888776675555 456777898888888866544
No 393
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=22.11 E-value=1.7e+02 Score=22.46 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=18.1
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG 53 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (148)
+++.|.|+++- .-.++++.|+++|+.|+..+
T Consensus 9 k~vlVtGas~g--------IG~~la~~l~~~G~~v~~~~ 39 (260)
T PRK12823 9 KVVVVTGAAQG--------IGRGVALRAAAEGARVVLVD 39 (260)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHHCCCEEEEEe
Confidence 46666665541 23456666677777766543
No 394
>PRK09004 FMN-binding protein MioC; Provisional
Probab=22.03 E-value=2.5e+02 Score=20.39 Aligned_cols=9 Identities=22% Similarity=0.538 Sum_probs=4.6
Q ss_pred hhcCCeEEE
Q 032051 67 HRGGGHVLG 75 (148)
Q Consensus 67 ~~~GG~viG 75 (148)
.+.|+..++
T Consensus 110 ~~lGa~~v~ 118 (146)
T PRK09004 110 KAKGAKQIG 118 (146)
T ss_pred HHcCCeEee
Confidence 345665554
No 395
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=21.99 E-value=4.5e+02 Score=22.21 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=9.4
Q ss_pred HHhhcCCeEEEEeC
Q 032051 65 VVHRGGGHVLGIIP 78 (148)
Q Consensus 65 gA~~~GG~viGv~p 78 (148)
++.+.||.++-+-|
T Consensus 66 A~~~LGg~~i~l~~ 79 (334)
T PRK12562 66 AAYDQGARVTYLGP 79 (334)
T ss_pred HHHHcCCeEEEeCC
Confidence 34567888886644
No 396
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.89 E-value=3.5e+02 Score=21.22 Aligned_cols=107 Identities=15% Similarity=0.095 Sum_probs=54.3
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE--EEcCCCCChHHHHHHHHhhcCCeEEEEeCCccccccc---CC
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL--VYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEI---TG 88 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l--v~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~---~~ 88 (148)
.+.|+|+=+. + .+.+.++.+.|.+.|+.+ +|=-.+ +..+++.+-..+.....||.-. -+. .|. ..
T Consensus 4 ~~vv~Vir~~----~---~~~a~~ia~al~~gGi~~iEit~~tp-~a~~~I~~l~~~~~~~~vGAGT-Vl~-~e~a~~ai 73 (201)
T PRK06015 4 QPVIPVLLID----D---VEHAVPLARALAAGGLPAIEITLRTP-AALDAIRAVAAEVEEAIVGAGT-ILN-AKQFEDAA 73 (201)
T ss_pred CCEEEEEEcC----C---HHHHHHHHHHHHHCCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEeeEe-CcC-HHHHHHHH
Confidence 3567777321 2 256778888888888775 333335 7777776655555566677621 111 111 01
Q ss_pred CCCceeeecCCHHHHHHHHHHcCCEEEEecCchhhHHHHHHHHH
Q 032051 89 ETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVIT 132 (148)
Q Consensus 89 ~~~~~~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~ 132 (148)
.--.+.++.+++...-.. .....-+..+|| .-|.+|+..+|.
T Consensus 74 ~aGA~FivSP~~~~~vi~-~a~~~~i~~iPG-~~TptEi~~A~~ 115 (201)
T PRK06015 74 KAGSRFIVSPGTTQELLA-AANDSDVPLLPG-AATPSEVMALRE 115 (201)
T ss_pred HcCCCEEECCCCCHHHHH-HHHHcCCCEeCC-CCCHHHHHHHHH
Confidence 111233444444322111 122333555665 347777777774
No 397
>PRK06398 aldose dehydrogenase; Validated
Probab=21.88 E-value=1.6e+02 Score=22.81 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=15.4
Q ss_pred eEEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 48 DLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 48 ~lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
.+|+||.. |+=.++++-..+.|-+|+.+
T Consensus 9 vlItGas~-gIG~~ia~~l~~~G~~Vi~~ 36 (258)
T PRK06398 9 AIVTGGSQ-GIGKAVVNRLKEEGSNVINF 36 (258)
T ss_pred EEEECCCc-hHHHHHHHHHHHCCCeEEEE
Confidence 45555533 66666666555555555544
No 398
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=21.87 E-value=2e+02 Score=23.73 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=23.9
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG 53 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (148)
+|.++.....+ |..-.-.|+++|.++||.|.+-.
T Consensus 2 rIl~~~~p~~G----Hv~P~l~la~~L~~rGh~V~~~t 35 (401)
T cd03784 2 RVLITTIGSRG----DVQPLVALAWALRAAGHEVRVAT 35 (401)
T ss_pred eEEEEeCCCcc----hHHHHHHHHHHHHHCCCeEEEee
Confidence 56666544443 44566789999999999986654
No 399
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=21.82 E-value=4.2e+02 Score=21.22 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 102 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 102 ~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
..-..+...||.+|.=+| |..+|.+ . .++|++.++
T Consensus 269 ~~~~~l~~~ad~~v~~Sg--gi~~Ea~---~------~g~PvI~~~ 303 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG--GIQEEAS---F------LGVPVLNLR 303 (363)
T ss_pred HHHHHHHHcCcEEEEcCc--cHHhhhh---h------cCCCEEeeC
Confidence 344566788999985555 5444443 1 379999874
No 400
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=21.82 E-value=93 Score=23.66 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCEEEEe---cCchh--hHHHHHHHH
Q 032051 101 HQRKAEMARNSDCFIAL---PGGYG--TLEELLEVI 131 (148)
Q Consensus 101 ~~R~~~~v~~sda~Ivl---pGG~G--TL~El~~~~ 131 (148)
.++-+.+++.+|.|+++ +||.| .-..+.+.+
T Consensus 73 ~~~ir~~le~~d~~~i~~slgGGTGsG~~~~i~~~~ 108 (192)
T smart00864 73 LDEIREELEGADGVFITAGMGGGTGTGAAPVIAEIA 108 (192)
T ss_pred HHHHHHHhcCCCEEEEeccCCCCccccHHHHHHHHH
Confidence 45667778999999887 45554 444444444
No 401
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=21.80 E-value=3.8e+02 Score=20.62 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=23.7
Q ss_pred CCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEecC
Q 032051 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLHV 148 (148)
Q Consensus 111 sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n~ 148 (148)
.|++|++.=..-+++++..+.... ..+|+|++|.
T Consensus 98 ~~~~vvv~p~~~~l~~~e~~~~~~----~~rpvvl~Np 131 (209)
T PF09353_consen 98 DDILVVVAPSPQELDDVEKLCEAA----GGRPVVLLNP 131 (209)
T ss_pred CCEEEEEECChhhHHHHHHHHHhc----CCCeEEEEec
Confidence 588777766666677777666431 2489999994
No 402
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=21.79 E-value=2.6e+02 Score=20.81 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=17.2
Q ss_pred HHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 107 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 107 ~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
+-...|++|+.+...-..++....+. ..++|+++++
T Consensus 52 ~~~~vdgvi~~~~~~~~~~~~~~~l~-----~~~ip~V~~~ 87 (267)
T cd01536 52 IAQGVDGIIISPVDSAALTPALKKAN-----AAGIPVVTVD 87 (267)
T ss_pred HHcCCCEEEEeCCCchhHHHHHHHHH-----HCCCcEEEec
Confidence 33467777776643222222222221 2356777664
No 403
>PRK06194 hypothetical protein; Provisional
Probab=21.77 E-value=3.9e+02 Score=20.75 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=0.0
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
+.++|.|.|+++ -...++.+.|+++|+.|+.-+-...-.+...+.....+..+..+
T Consensus 5 ~~k~vlVtGasg--------gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (287)
T PRK06194 5 AGKVAVITGAAS--------GFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGV 60 (287)
T ss_pred CCCEEEEeCCcc--------HHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEE
No 404
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=21.74 E-value=1.6e+02 Score=22.88 Aligned_cols=11 Identities=9% Similarity=0.247 Sum_probs=7.0
Q ss_pred cCCEEEEecCc
Q 032051 110 NSDCFIALPGG 120 (148)
Q Consensus 110 ~sda~IvlpGG 120 (148)
.-|++|...|.
T Consensus 84 ~iD~lv~nAG~ 94 (267)
T TIGR02685 84 RCDVLVNNASA 94 (267)
T ss_pred CceEEEECCcc
Confidence 35777777664
No 405
>PF07442 Ponericin: Ponericin; InterPro: IPR010002 This family contains a number of ponericin peptides (approximately 30 residues long) from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). These peptides exhibit antibacterial and insecticidal properties, and may adopt an amphipathic alpha-helical structure in polar environments such as cell membranes [].; GO: 0005576 extracellular region
Probab=21.72 E-value=62 Score=17.57 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHH
Q 032051 33 DAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVV 66 (148)
Q Consensus 33 ~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA 66 (148)
+....-+.+|-+. |+ |+|.|+...|
T Consensus 4 dw~k~~~~wlkkk--------gp-gi~kaal~aa 28 (29)
T PF07442_consen 4 DWLKKAGEWLKKK--------GP-GILKAALKAA 28 (29)
T ss_pred HHHHHHHHHHHhc--------Cc-hHHHHHHHhc
Confidence 3345556666554 47 9999887765
No 406
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=21.71 E-value=1.4e+02 Score=25.32 Aligned_cols=34 Identities=35% Similarity=0.395 Sum_probs=23.5
Q ss_pred HcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEE
Q 032051 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQ 145 (148)
Q Consensus 109 ~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l 145 (148)
..=|.+|+.+|+.||..-+..-++ +++ ++.|||=
T Consensus 179 ~~fD~vVva~gs~gT~AGl~~g~~--~~~-~~~~ViG 212 (323)
T COG2515 179 LKFDSVVVAPGSGGTHAGLLVGLA--QLG-PDVEVIG 212 (323)
T ss_pred cCCCEEEEeCCCcchHHHHHHHhh--hcc-CCCceEE
Confidence 456889999999999988876554 333 3455543
No 407
>PRK12747 short chain dehydrogenase; Provisional
Probab=21.67 E-value=1.7e+02 Score=22.32 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=8.8
Q ss_pred HHHHHHHHhCCCeEEE
Q 032051 36 LDLGQELVSKKLDLVY 51 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~ 51 (148)
.++++.|++.|+.++.
T Consensus 18 ~~ia~~l~~~G~~v~~ 33 (252)
T PRK12747 18 RAIAKRLANDGALVAI 33 (252)
T ss_pred HHHHHHHHHCCCeEEE
Confidence 4455555666666543
No 408
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.60 E-value=4.9e+02 Score=21.86 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=11.7
Q ss_pred HHcCCEEEEecCch
Q 032051 108 ARNSDCFIALPGGY 121 (148)
Q Consensus 108 v~~sda~IvlpGG~ 121 (148)
-..+|++|+++||.
T Consensus 81 ~~~~d~IIaiGGGS 94 (374)
T cd08189 81 ENGCDAILAVGGGS 94 (374)
T ss_pred hcCCCEEEEeCCcc
Confidence 34689999999986
No 409
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=21.60 E-value=1.4e+02 Score=23.16 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=22.4
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
+|+++..+-.+...-.......|.++|+++||.+.
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~ 35 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVL 35 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEE
Confidence 35666544443212244567889999999998863
No 410
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=21.55 E-value=1.3e+02 Score=23.45 Aligned_cols=10 Identities=30% Similarity=0.776 Sum_probs=7.3
Q ss_pred HcCCEEEEecC
Q 032051 109 RNSDCFIALPG 119 (148)
Q Consensus 109 ~~sda~IvlpG 119 (148)
+.+|++| +||
T Consensus 38 ~~~d~iI-lPG 47 (210)
T CHL00188 38 AQVHALV-LPG 47 (210)
T ss_pred hhCCEEE-ECC
Confidence 5689866 777
No 411
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=21.52 E-value=4.6e+02 Score=21.54 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=43.0
Q ss_pred ceEEEEeCCCCCC--ChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHH--HHHhhcCCeEEEEeCCcccc
Q 032051 15 KRVCVFCGSSTGK--RNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVS--HVVHRGGGHVLGIIPKTLMN 83 (148)
Q Consensus 15 ~~V~V~ggs~~~~--~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~--~gA~~~GG~viGv~p~~~~~ 83 (148)
..|-+.|++.... ..+-++..-+.....+....+++.|-|....-+++. +-|.+.|-.-+-++|..+.+
T Consensus 40 ~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k 112 (299)
T COG0329 40 DGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNK 112 (299)
T ss_pred CEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcC
Confidence 3456666555432 223334445555556666677888888878888774 55667787777777766543
No 412
>PRK09291 short chain dehydrogenase; Provisional
Probab=21.52 E-value=1.7e+02 Score=22.30 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=18.5
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
++|.|.|+++ -....+.+.|+++|+.++..
T Consensus 3 ~~vlVtGasg--------~iG~~ia~~l~~~G~~v~~~ 32 (257)
T PRK09291 3 KTILITGAGS--------GFGREVALRLARKGHNVIAG 32 (257)
T ss_pred CEEEEeCCCC--------HHHHHHHHHHHHCCCEEEEE
Confidence 4677776655 13455666677778776643
No 413
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.51 E-value=3.1e+02 Score=21.25 Aligned_cols=34 Identities=6% Similarity=0.002 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
+|+++-.+ . .++-+.+....+-+.+.+.||.++.
T Consensus 2 ~ig~i~~~-~-~~~~~~~~~~gi~~~a~~~gy~~~~ 35 (280)
T cd06315 2 NIIFVASD-L-KNGGILGVGEGVREAAKAIGWNLRI 35 (280)
T ss_pred eEEEEecc-c-CCcHHHHHHHHHHHHHHHcCcEEEE
Confidence 56766432 2 2455556667777777777887654
No 414
>PRK05872 short chain dehydrogenase; Provisional
Probab=21.46 E-value=1.6e+02 Score=23.45 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=16.7
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
++|.|.|+++ -...++++.|+++|+.|+.
T Consensus 10 k~vlItGas~--------gIG~~ia~~l~~~G~~V~~ 38 (296)
T PRK05872 10 KVVVVTGAAR--------GIGAELARRLHARGAKLAL 38 (296)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEE
Confidence 4666666554 1334566666677777643
No 415
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=21.44 E-value=2.5e+02 Score=21.47 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=22.2
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
|+.|+|+ +..-+.... -.|..|+..||++|+.+
T Consensus 1 m~iI~v~-s~KGGvGKT--t~a~nla~~la~~g~~V 33 (246)
T TIGR03371 1 MKVIAIV-GVKGGVGKT--TLTANLASALKLLGEPV 33 (246)
T ss_pred CcEEEEE-eCCCCccHH--HHHHHHHHHHHhCCCcE
Confidence 4567777 445454432 46788999999988765
No 416
>cd01356 AcnX_swivel Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=21.43 E-value=1.7e+02 Score=21.36 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=24.2
Q ss_pred cCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcE
Q 032051 110 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPV 143 (148)
Q Consensus 110 ~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv 143 (148)
.++-+++||+|.|.-.--.-.|.+.+.|..++=+
T Consensus 42 i~gkILv~p~~kGSt~gs~vl~~l~~~g~aP~Ai 75 (123)
T cd01356 42 IAGKVLVLPGGKGSTVGSYVLYELARNGTAPAAI 75 (123)
T ss_pred ccceEEEecCCCCcchHHHHHHHHHHcCCCCeeE
Confidence 4788999999999877666666666665433333
No 417
>PRK00942 acetylglutamate kinase; Provisional
Probab=21.42 E-value=1.8e+02 Score=23.41 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=27.1
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCC--eEEEcCCC
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKL--DLVYGGGS 55 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~--~lv~GGG~ 55 (148)
...|.-||||...+.+.....+.++.. |.+.|. .||.|||+
T Consensus 24 ~~iViK~GGs~l~~~~~~~~l~~~i~~-l~~~g~~vVlVhGgg~ 66 (283)
T PRK00942 24 KTIVIKYGGNAMTDEELKEAFARDIVL-LKQVGINPVVVHGGGP 66 (283)
T ss_pred CeEEEEEChHHhcCcchHHHHHHHHHH-HHHCCCCEEEEeCChH
Confidence 346888998887655555556676664 556554 57888865
No 418
>PRK06483 dihydromonapterin reductase; Provisional
Probab=21.37 E-value=1.7e+02 Score=22.04 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=9.1
Q ss_pred HHHHHHHHhCCCeEEE
Q 032051 36 LDLGQELVSKKLDLVY 51 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv~ 51 (148)
+++++.|+++|+.|+.
T Consensus 16 ~~ia~~l~~~G~~V~~ 31 (236)
T PRK06483 16 LALAWHLLAQGQPVIV 31 (236)
T ss_pred HHHHHHHHHCCCeEEE
Confidence 4455555666666543
No 419
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=21.35 E-value=1e+02 Score=23.86 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=33.6
Q ss_pred CChHHHHHHHHHHHHHHhC-CCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCc
Q 032051 27 KRNCYRDAALDLGQELVSK-KLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT 80 (148)
Q Consensus 27 ~~~~~~~~A~~lG~~lA~~-g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~ 80 (148)
..+...+...+|++.+-.. -..+..| ...|+..-+-+=| .-|+=+.|..
T Consensus 102 kG~~is~vk~~L~~~~r~~~eV~v~iG-SReGiP~GlfRfA----d~VvDlaP~~ 151 (173)
T PF14419_consen 102 KGDPISEVKDKLAEDLRYAKEVVVFIG-SREGIPRGLFRFA----DYVVDLAPGV 151 (173)
T ss_pred CCCcHHHHHHHHHHHHhhCcEEEEEEE-cccCCChhHHHHh----hhhhhcCCce
Confidence 3456888999999999765 5555666 4779988776654 4455555543
No 420
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=21.34 E-value=1.7e+02 Score=22.51 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=9.2
Q ss_pred HHHHHHHHHhCCCeEE
Q 032051 35 ALDLGQELVSKKLDLV 50 (148)
Q Consensus 35 A~~lG~~lA~~g~~lv 50 (148)
..++++.|+++|+.|+
T Consensus 23 G~a~a~~l~~~G~~vv 38 (253)
T PRK08993 23 GQGMALGLAEAGCDIV 38 (253)
T ss_pred HHHHHHHHHHCCCEEE
Confidence 3455555566666655
No 421
>PRK10494 hypothetical protein; Provisional
Probab=21.33 E-value=2.1e+02 Score=23.07 Aligned_cols=12 Identities=42% Similarity=0.877 Sum_probs=10.6
Q ss_pred cCCEEEEecCch
Q 032051 110 NSDCFIALPGGY 121 (148)
Q Consensus 110 ~sda~IvlpGG~ 121 (148)
.+|++|||+||.
T Consensus 78 ~~d~IVVLGgG~ 89 (259)
T PRK10494 78 KVDYIVVLGGGY 89 (259)
T ss_pred CCCEEEEcCCCc
Confidence 589999999986
No 422
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=21.26 E-value=2e+02 Score=18.72 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=17.7
Q ss_pred CEEEEecCchhhHHHHHHHHHHHHhCCC
Q 032051 112 DCFIALPGGYGTLEELLEVITWAQLGIH 139 (148)
Q Consensus 112 da~IvlpGG~GTL~El~~~~~~~~lg~~ 139 (148)
--+|.|| +|++||..+.+ .++|..
T Consensus 19 GKvi~lP---~SleeLl~ia~-~kfg~~ 42 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIAS-EKFGFS 42 (69)
T ss_pred CEEEEcC---ccHHHHHHHHH-HHhCCC
Confidence 4578889 69999998765 466653
No 423
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=21.17 E-value=3e+02 Score=22.41 Aligned_cols=38 Identities=3% Similarity=-0.073 Sum_probs=19.5
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
+.++|+++... . .++-+.+.++-+-+++.++||.++..
T Consensus 24 ~~~~Ig~i~~~-~-~~~f~~~~~~gi~~~a~~~g~~l~i~ 61 (330)
T PRK10355 24 KEVKIGMAIDD-L-RLERWQKDRDIFVKKAESLGAKVFVQ 61 (330)
T ss_pred CCceEEEEecC-C-CchHHHHHHHHHHHHHHHcCCEEEEE
Confidence 34677777632 2 23333334444445555667776543
No 424
>PRK08210 aspartate kinase I; Reviewed
Probab=21.14 E-value=1.5e+02 Score=25.27 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=24.7
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCC---eEEEcCCC
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKL---DLVYGGGS 55 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~---~lv~GGG~ 55 (148)
.|.=||||...+.+...+.++++.+++. .|+ .|++|+|.
T Consensus 4 iViK~GGs~l~~~~~~~~~~~~i~~~~~-~g~~~vvV~sa~g~ 45 (403)
T PRK08210 4 IVQKFGGTSVSTEERRKMAVNKIKKALK-EGYKVVVVVSAMGR 45 (403)
T ss_pred EEEeECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCC
Confidence 4556889888765556677777777664 333 34556544
No 425
>PRK07576 short chain dehydrogenase; Provisional
Probab=21.12 E-value=1.7e+02 Score=22.70 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=17.2
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
++|.|.|+++ -....+.+.|+++|+.|+.-
T Consensus 10 k~ilItGasg--------gIG~~la~~l~~~G~~V~~~ 39 (264)
T PRK07576 10 KNVVVVGGTS--------GINLGIAQAFARAGANVAVA 39 (264)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEE
Confidence 4666776544 13345556666677775443
No 426
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=21.08 E-value=5.2e+02 Score=21.97 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=40.0
Q ss_pred cceEEEEe-CCCCCCChHHHHHHHHHHHHHHhC-CCeEEEc----CCCCChHHHHHHHHhhcCCeEEEEeCCccc
Q 032051 14 FKRVCVFC-GSSTGKRNCYRDAALDLGQELVSK-KLDLVYG----GGSVGLMGLVSHVVHRGGGHVLGIIPKTLM 82 (148)
Q Consensus 14 ~~~V~V~g-gs~~~~~~~~~~~A~~lG~~lA~~-g~~lv~G----GG~~GlM~a~~~gA~~~GG~viGv~p~~~~ 82 (148)
++.|-+++ ||| ++...+.-++|++.+.++ ++.+.++ ..+ -+.+++ +...+.|-+-|-|+|-.+.
T Consensus 6 ~~aiLLvgHGSR---dp~~~~~~~~La~~l~~~~~~~V~~aFLE~~eP-sl~eal-~~l~~~G~~~IvVvPlFL~ 75 (335)
T PRK05782 6 NTAIILIGHGSR---RETFNSDMEGMANYLKEKLGVPIYLTYNEFAEP-NWRSLL-NEIIKEGYRRVIIALAFLG 75 (335)
T ss_pred CceEEEEecCCC---ChHHHHHHHHHHHHHHhccCCceEEEEeccCCC-CHHHHH-HHHHHCCCCEEEEeccccc
Confidence 34444443 444 456777778888888654 6666555 444 566665 4555677777888886653
No 427
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=20.99 E-value=1.5e+02 Score=24.45 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCChHHHHHHHH
Q 032051 35 ALDLGQELVSKKLDLVYGGGSVGLMGLVSHVV 66 (148)
Q Consensus 35 A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA 66 (148)
.+++++.||+.|..|+.+ -...-.+++.+..
T Consensus 24 G~a~A~~la~~Ga~Vv~~-~~~~~l~~~~~~~ 54 (303)
T PLN02730 24 GWAIAKALAAAGAEILVG-TWVPALNIFETSL 54 (303)
T ss_pred HHHHHHHHHHCCCEEEEE-eCcchhhHHHHhh
Confidence 356667777788877763 3445556665444
No 428
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=20.99 E-value=2.2e+02 Score=21.97 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=20.4
Q ss_pred HHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 105 ~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
.++-...|++|+.|......+++.++ ...+.||+++|
T Consensus 52 ~~~~~~vdgiI~~~~~~~~~~~~~~~------~~~giPvV~~~ 88 (268)
T cd06306 52 DCAAWGADAILLGAVSPDGLNEILQQ------VAASIPVIALV 88 (268)
T ss_pred HHHHcCCCEEEEcCCChhhHHHHHHH------HHCCCCEEEec
Confidence 34445789988887543222222221 12568888775
No 429
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=20.98 E-value=70 Score=27.72 Aligned_cols=26 Identities=35% Similarity=0.735 Sum_probs=15.2
Q ss_pred EEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 49 LVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 49 lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
+|-|||+.|+|-|... .+.|-+|+=+
T Consensus 4 iIIGgGaAGl~aA~~a--a~~g~~V~vl 29 (409)
T PF03486_consen 4 IIIGGGAAGLMAAITA--AEKGARVLVL 29 (409)
T ss_dssp EEE--SHHHHHHHHHH--HHTT--EEEE
T ss_pred EEECCCHHHHHHHHHH--HhCCCCEEEE
Confidence 5779999999999876 3344444433
No 430
>PRK08264 short chain dehydrogenase; Validated
Probab=20.94 E-value=3.6e+02 Score=20.13 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=16.4
Q ss_pred CeEEEcCCCCChHHHHHHHHhhcCC-eEEEE
Q 032051 47 LDLVYGGGSVGLMGLVSHVVHRGGG-HVLGI 76 (148)
Q Consensus 47 ~~lv~GGG~~GlM~a~~~gA~~~GG-~viGv 76 (148)
..+|+||. .|+-.++++-..+.|- .|+.+
T Consensus 8 ~vlItGgs-g~iG~~la~~l~~~G~~~V~~~ 37 (238)
T PRK08264 8 VVLVTGAN-RGIGRAFVEQLLARGAAKVYAA 37 (238)
T ss_pred EEEEECCC-chHHHHHHHHHHHCCcccEEEE
Confidence 34566653 3666666666666655 55444
No 431
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=20.94 E-value=4.7e+02 Score=21.37 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=41.3
Q ss_pred cceEEEEeCCCCCC---ChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHH--HHHhhcCCeEEEEeCCccc
Q 032051 14 FKRVCVFCGSSTGK---RNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVS--HVVHRGGGHVLGIIPKTLM 82 (148)
Q Consensus 14 ~~~V~V~ggs~~~~---~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~--~gA~~~GG~viGv~p~~~~ 82 (148)
...|.+.|++.... .++..+..+...+. +.....|+.|-|. ..-+++. +-|.+.|-..+-++|..+.
T Consensus 42 v~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~-~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~ 113 (303)
T PRK03620 42 AAALFAAGGTGEFFSLTPDEYSQVVRAAVET-TAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYLT 113 (303)
T ss_pred CCEEEECcCCcCcccCCHHHHHHHHHHHHHH-hCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 34677777665433 23344444444444 3445788888875 7777664 5567788888878776653
No 432
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=20.85 E-value=1.7e+02 Score=22.59 Aligned_cols=29 Identities=10% Similarity=0.267 Sum_probs=15.9
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
++|.|.|+++ -..+++++.|+++|+.|+.
T Consensus 9 k~vlItGas~--------gIG~~ia~~l~~~G~~v~~ 37 (260)
T PRK08416 9 KTLVISGGTR--------GIGKAIVYEFAQSGVNIAF 37 (260)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHHCCCEEEE
Confidence 4566665543 1334555566667776654
No 433
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=20.79 E-value=1.7e+02 Score=25.73 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhC
Q 032051 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG 137 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg 137 (148)
.-|+-+=...++++++-|==+|||.|.+++..+.+-.
T Consensus 318 ~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~ 354 (423)
T COG0148 318 RLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDA 354 (423)
T ss_pred HHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHC
Confidence 3466666677999999999999999999999988754
No 434
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=20.75 E-value=2e+02 Score=24.36 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=22.1
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 13 ~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
++++|+++-....+.+... .++++.|+++||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~R~----~~~a~~L~~~G~~V 34 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRM----QYHALSLAKHGWKV 34 (415)
T ss_pred CccEEEEEEecccCCCHHH----HHHHHHHHhcCceE
Confidence 3568898865444444433 55777888888885
No 435
>PRK07478 short chain dehydrogenase; Provisional
Probab=20.75 E-value=1.9e+02 Score=22.14 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=18.2
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
+++.|.|+++- ...++.+.|+++|+.|+.-
T Consensus 7 k~~lItGas~g--------iG~~ia~~l~~~G~~v~~~ 36 (254)
T PRK07478 7 KVAIITGASSG--------IGRAAAKLFAREGAKVVVG 36 (254)
T ss_pred CEEEEeCCCCh--------HHHHHHHHHHHCCCEEEEE
Confidence 46777765541 3345666677778876543
No 436
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.73 E-value=2.8e+02 Score=21.13 Aligned_cols=33 Identities=9% Similarity=0.028 Sum_probs=17.5
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHh--CCCeEEE
Q 032051 17 VCVFCGSSTGKRNCYRDAALDLGQELVS--KKLDLVY 51 (148)
Q Consensus 17 V~V~ggs~~~~~~~~~~~A~~lG~~lA~--~g~~lv~ 51 (148)
|+|+-... .++.+.+..+.+-+.+.+ .|+.++.
T Consensus 2 Ig~v~~~~--~~~~~~~~~~gi~~~~~~~~~~~~~~~ 36 (271)
T cd06321 2 IGVSVGDL--GNPFFVALAKGAEAAAKKLNPGVKVTV 36 (271)
T ss_pred eEEEeccc--CCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 55554322 245555556666666666 5555443
No 437
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=20.73 E-value=2.1e+02 Score=23.52 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEe
Q 032051 33 DAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 33 ~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~ 77 (148)
-.++-||+.+.+.|+.+..-=-+ |+...||.+...+
T Consensus 17 ta~~ila~a~~~~G~~v~~~~~y---------gs~~RGg~~~~~v 52 (312)
T PRK14028 17 TATYIIANAAVIDGFYAIANPEF---------GAERRGAPVKAFL 52 (312)
T ss_pred HHHHHHHHHHHhcCceEEecccc---------CchhcCCceEEEE
Confidence 34667777777788886543322 2556788776653
No 438
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=20.69 E-value=1.8e+02 Score=23.44 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=19.4
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
++|.|+||+...=.+ +.-++|.|+++|+.+
T Consensus 61 ~~V~VlcG~GNNGGD-----Glv~AR~L~~~G~~V 90 (246)
T PLN03050 61 PRVLLVCGPGNNGGD-----GLVAARHLAHFGYEV 90 (246)
T ss_pred CeEEEEECCCCCchh-----HHHHHHHHHHCCCeE
Confidence 578899887743222 234666777788865
No 439
>PRK07023 short chain dehydrogenase; Provisional
Probab=20.67 E-value=1.8e+02 Score=22.00 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=7.4
Q ss_pred HHHHHHHHhCCCeEE
Q 032051 36 LDLGQELVSKKLDLV 50 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv 50 (148)
..+.+.|+++|+.++
T Consensus 15 ~~ia~~l~~~G~~v~ 29 (243)
T PRK07023 15 AALAEQLLQPGIAVL 29 (243)
T ss_pred HHHHHHHHhCCCEEE
Confidence 344444555555543
No 440
>PRK05693 short chain dehydrogenase; Provisional
Probab=20.66 E-value=1.8e+02 Score=22.65 Aligned_cols=15 Identities=7% Similarity=0.107 Sum_probs=8.4
Q ss_pred HHHHHHHHhCCCeEE
Q 032051 36 LDLGQELVSKKLDLV 50 (148)
Q Consensus 36 ~~lG~~lA~~g~~lv 50 (148)
+++.+.|+++|+.|+
T Consensus 15 ~~la~~l~~~G~~V~ 29 (274)
T PRK05693 15 RALADAFKAAGYEVW 29 (274)
T ss_pred HHHHHHHHHCCCEEE
Confidence 445555556666654
No 441
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=20.65 E-value=1.2e+02 Score=23.59 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=18.4
Q ss_pred EeCCCCCCC---hHHHHHHHHHHHHHHhCCCeEEEcCCC
Q 032051 20 FCGSSTGKR---NCYRDAALDLGQELVSKKLDLVYGGGS 55 (148)
Q Consensus 20 ~ggs~~~~~---~~~~~~A~~lG~~lA~~g~~lv~GGG~ 55 (148)
||||..... +...+.++++.+........+|.|||.
T Consensus 6 lGGs~l~~~~~~~~i~~~~~~i~~~~~~~~iiiV~GgG~ 44 (221)
T cd04253 6 LGGSVLAPEKDADFIKEYANVLRKISDGHKVAVVVGGGR 44 (221)
T ss_pred eccceeCCCCChHHHHHHHHHHHHHhCCCEEEEEECCCH
Confidence 566665432 333344444443222234567899876
No 442
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=20.63 E-value=79 Score=26.48 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=19.2
Q ss_pred EEEcCCCCChHHHHHHHHhhcCCeEEEEeC
Q 032051 49 LVYGGGSVGLMGLVSHVVHRGGGHVLGIIP 78 (148)
Q Consensus 49 lv~GGG~~GlM~a~~~gA~~~GG~viGv~p 78 (148)
||.|+|..|++.|+ .|.++|-+|+-|--
T Consensus 3 vVIG~G~AGl~AA~--~Aae~G~~V~lvek 30 (417)
T PF00890_consen 3 VVIGGGLAGLAAAI--EAAEAGAKVLLVEK 30 (417)
T ss_dssp EEE-SSHHHHHHHH--HHHHTTT-EEEEES
T ss_pred EEECCCHHHHHHHH--HHhhhcCeEEEEEe
Confidence 67799887887766 46678888888743
No 443
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=20.61 E-value=1.2e+02 Score=23.55 Aligned_cols=35 Identities=17% Similarity=0.428 Sum_probs=18.3
Q ss_pred EeCCCCCCC------hHHHHHHHHHHHHHHhCC--CeEEEcCCC
Q 032051 20 FCGSSTGKR------NCYRDAALDLGQELVSKK--LDLVYGGGS 55 (148)
Q Consensus 20 ~ggs~~~~~------~~~~~~A~~lG~~lA~~g--~~lv~GGG~ 55 (148)
||||...++ +...+.|+++.+.. ++| ..||.|||.
T Consensus 6 iGGs~l~~~~~~~~~~~i~~~a~~i~~~~-~~g~~vvvV~ggG~ 48 (229)
T cd04239 6 LSGEALAGEGGGIDPEVLKEIAREIKEVV-DLGVEVAIVVGGGN 48 (229)
T ss_pred ECcceecCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCh
Confidence 677776542 22334444444432 344 457888655
No 444
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=20.59 E-value=2.2e+02 Score=21.91 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
+|+|+|++. .....+++.|+++|+.|+..
T Consensus 2 kI~IIGG~G--------~mG~ala~~L~~~G~~V~v~ 30 (219)
T TIGR01915 2 KIAVLGGTG--------DQGKGLALRLAKAGNKIIIG 30 (219)
T ss_pred EEEEEcCCC--------HHHHHHHHHHHhCCCEEEEE
Confidence 688886444 24567888888888887544
No 445
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.57 E-value=4.2e+02 Score=20.74 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=53.7
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeCCcccccccCCCCCce
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGE 93 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p~~~~~~e~~~~~~~~ 93 (148)
.+.|++..+|+......-.+.-.++.+.|.++|+.++.-|++ . .+...+...+.-+ ++....
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~-~-e~~~~~~i~~~~~----------------~~~~~~ 182 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGP-A-ERELAEEIAAALG----------------GPRVVN 182 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEech-h-hHHHHHHHHHhcC----------------CCcccc
Confidence 456777777764332222344577788887778876544445 2 1222222222100 000111
Q ss_pred eeecCCHHHHHHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEe
Q 032051 94 VKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQL 146 (148)
Q Consensus 94 ~~~~~~~~~R~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~ 146 (148)
+.-..++.+- ..++..||.+|..-.|.-.|. .++ ++|++.+
T Consensus 183 ~~~~~~l~e~-~~li~~~~l~I~~Dsg~~HlA---~a~--------~~p~i~l 223 (279)
T cd03789 183 LAGKTSLREL-AALLARADLVVTNDSGPMHLA---AAL--------GTPTVAL 223 (279)
T ss_pred CcCCCCHHHH-HHHHHhCCEEEeeCCHHHHHH---HHc--------CCCEEEE
Confidence 1112245544 455788999998877665544 222 6887754
No 446
>PRK06523 short chain dehydrogenase; Provisional
Probab=20.54 E-value=1.8e+02 Score=22.22 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=13.1
Q ss_pred eEEEcCCCCChHHHHHHHHhhcCCeEEEE
Q 032051 48 DLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 48 ~lv~GGG~~GlM~a~~~gA~~~GG~viGv 76 (148)
.||+||+. |+=.++++-..+.|-+++.+
T Consensus 12 vlItGas~-gIG~~ia~~l~~~G~~v~~~ 39 (260)
T PRK06523 12 ALVTGGTK-GIGAATVARLLEAGARVVTT 39 (260)
T ss_pred EEEECCCC-chhHHHHHHHHHCCCEEEEE
Confidence 34555432 55555555544444444443
No 447
>PRK08265 short chain dehydrogenase; Provisional
Probab=20.49 E-value=1.8e+02 Score=22.49 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=18.7
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
+++.|.|+++ -..+++++.|+++|+.|+.-
T Consensus 7 k~vlItGas~--------gIG~~ia~~l~~~G~~V~~~ 36 (261)
T PRK08265 7 KVAIVTGGAT--------LIGAAVARALVAAGARVAIV 36 (261)
T ss_pred CEEEEECCCC--------hHHHHHHHHHHHCCCEEEEE
Confidence 5666776554 13456666777778876544
No 448
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.46 E-value=2e+02 Score=22.74 Aligned_cols=10 Identities=20% Similarity=0.062 Sum_probs=6.2
Q ss_pred CCEEEEecCc
Q 032051 111 SDCFIALPGG 120 (148)
Q Consensus 111 sda~IvlpGG 120 (148)
-|.+|.-.|-
T Consensus 89 iD~lv~nAG~ 98 (272)
T PRK08159 89 LDFVVHAIGF 98 (272)
T ss_pred CcEEEECCcc
Confidence 4777666654
No 449
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=20.44 E-value=5.6e+02 Score=22.10 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=25.3
Q ss_pred HcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEecC
Q 032051 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLHV 148 (148)
Q Consensus 109 ~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n~ 148 (148)
+..|++|+.-.-+||=..+...+. ..++|+++++.
T Consensus 62 ~~~d~ii~~~~tf~~~~~~~~~~~-----~~~~Pvll~a~ 96 (452)
T cd00578 62 ANCDGLIVWMHTFGPAKMWIAGLS-----ELRKPVLLLAT 96 (452)
T ss_pred cCCcEEEEcccccccHHHHHHHHH-----hcCCCEEEEeC
Confidence 468888888888888766665542 25799988763
No 450
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=20.43 E-value=1.8e+02 Score=22.22 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=20.7
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYG 52 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~G 52 (148)
++|.|.|+++ .....+.+.|+++|+.|+.-
T Consensus 11 k~vlItGa~g--------~iG~~ia~~l~~~G~~V~~~ 40 (255)
T PRK07523 11 RRALVTGSSQ--------GIGYALAEGLAQAGAEVILN 40 (255)
T ss_pred CEEEEECCcc--------hHHHHHHHHHHHcCCEEEEE
Confidence 6788887654 23466777777888887644
No 451
>PRK00170 azoreductase; Reviewed
Probab=20.42 E-value=3e+02 Score=20.44 Aligned_cols=33 Identities=0% Similarity=-0.170 Sum_probs=17.7
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhC--CCeE
Q 032051 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSK--KLDL 49 (148)
Q Consensus 16 ~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~--g~~l 49 (148)
.+.|.||.+. ..+.-.+.++.+.+.+.++ |+.+
T Consensus 4 il~i~gSpr~-~~s~s~~l~~~~~~~l~~~~~~~~v 38 (201)
T PRK00170 4 VLVIKSSILG-DYSQSMQLGDAFIEAYKEAHPDDEV 38 (201)
T ss_pred EEEEecCCCC-CCcHHHHHHHHHHHHHHHhCCCCeE
Confidence 4455554443 2133346677777777665 5543
No 452
>PRK05993 short chain dehydrogenase; Provisional
Probab=20.41 E-value=1.7e+02 Score=22.94 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=25.0
Q ss_pred CeEEEcCCCCChHHHHHHHHhhcCCeEEEEe
Q 032051 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (148)
Q Consensus 47 ~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~ 77 (148)
..+|+||+. |+=.++++...+.|-+|+.+.
T Consensus 6 ~vlItGasg-giG~~la~~l~~~G~~Vi~~~ 35 (277)
T PRK05993 6 SILITGCSS-GIGAYCARALQSDGWRVFATC 35 (277)
T ss_pred EEEEeCCCc-HHHHHHHHHHHHCCCEEEEEE
Confidence 568999854 999999999888898888874
No 453
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=20.33 E-value=1.7e+02 Score=23.85 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=21.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHhhcCCeEEEEeC
Q 032051 46 KLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIP 78 (148)
Q Consensus 46 g~~lv~GGG~~GlM~a~~~gA~~~GG~viGv~p 78 (148)
...+|+|+|..| .++.+-|+..|..++.+..
T Consensus 167 ~~VlV~G~g~iG--~~a~~~a~~~G~~vi~~~~ 197 (329)
T TIGR02822 167 GRLGLYGFGGSA--HLTAQVALAQGATVHVMTR 197 (329)
T ss_pred CEEEEEcCCHHH--HHHHHHHHHCCCeEEEEeC
Confidence 356788865444 4566778888888887754
No 454
>PLN02564 6-phosphofructokinase
Probab=20.19 E-value=3.3e+02 Score=24.46 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=32.5
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHhCCCe-EEEcCCCCChHHHHHH---HHhhcCCe--EEEE
Q 032051 18 CVFCGSSTGKRNCYRDAALDLGQELVSKKLD-LVYGGGSVGLMGLVSH---VVHRGGGH--VLGI 76 (148)
Q Consensus 18 ~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~-lv~GGG~~GlM~a~~~---gA~~~GG~--viGv 76 (148)
++.|+||... .. .++.+.|-+.|+. |++=||. |-|..+.+ .+.+.|-+ +|||
T Consensus 154 TiLGTsR~~~--~~----~~iv~~L~~~~Id~LivIGGD-GS~~gA~~L~e~~~~~g~~i~VIGI 211 (484)
T PLN02564 154 TILGTSRGGH--DT----SKIVDSIQDRGINQVYIIGGD-GTQKGASVIYEEIRRRGLKVAVAGI 211 (484)
T ss_pred ceeccCCCcc--hH----HHHHHHHHHhCCCEEEEECCc-hHHHHHHHHHHHHHHcCCCceEEEe
Confidence 5677777532 22 4556677777666 3344457 88888755 44456766 8887
No 455
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=20.19 E-value=3.2e+02 Score=21.00 Aligned_cols=39 Identities=8% Similarity=-0.014 Sum_probs=21.7
Q ss_pred HHHHHHcCCEEEEecCchhhHHHHHHHHHHHHhCCCCCcEEEec
Q 032051 104 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVNQLH 147 (148)
Q Consensus 104 ~~~~v~~sda~IvlpGG~GTL~El~~~~~~~~lg~~~kPv~l~n 147 (148)
+.++-...|++|+.+--.-..+++.. ++...+.|+|++|
T Consensus 48 ~~~~~~~~dgiii~~~~~~~~~~~~~-----~~~~~~iPvV~~~ 86 (289)
T cd01540 48 DNLGAQGAKGFVICVPDVKLGPAIVA-----KAKAYNMKVVAVD 86 (289)
T ss_pred HHHHHcCCCEEEEccCchhhhHHHHH-----HHHhCCCeEEEec
Confidence 33444568999998743211223222 2224678998886
No 456
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=20.15 E-value=3e+02 Score=23.17 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=11.4
Q ss_pred HcCCEEEEecCch
Q 032051 109 RNSDCFIALPGGY 121 (148)
Q Consensus 109 ~~sda~IvlpGG~ 121 (148)
..+|.+|+++||.
T Consensus 82 ~~~D~IIaiGGGs 94 (376)
T cd08193 82 AGADGVIGFGGGS 94 (376)
T ss_pred cCCCEEEEeCCch
Confidence 4789999999986
No 457
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=20.12 E-value=2.2e+02 Score=23.79 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=17.6
Q ss_pred ccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 032051 10 AMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (148)
Q Consensus 10 ~~~~~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (148)
.++..++|.|.|++.. ....|.+.|.++||.|+
T Consensus 17 ~~~~~~~IlVtGgtGf--------IG~~l~~~L~~~G~~V~ 49 (370)
T PLN02695 17 WPSEKLRICITGAGGF--------IASHIARRLKAEGHYII 49 (370)
T ss_pred CCCCCCEEEEECCccH--------HHHHHHHHHHhCCCEEE
Confidence 3445566777765442 23445555555666543
No 458
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.06 E-value=1.8e+02 Score=23.39 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=28.0
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCC-CCChHHHHHHHHhhcCCeEEEE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGG-SVGLMGLVSHVVHRGGGHVLGI 76 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGG-~~GlM~a~~~gA~~~GG~viGv 76 (148)
+++.|.|+++ + ..+.+++.|+++|+.++.-.- ...--+.+.+...+.|+.+..+
T Consensus 13 k~~lVTGas~-g-------IG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~ 67 (306)
T PRK07792 13 KVAVVTGAAA-G-------LGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAV 67 (306)
T ss_pred CEEEEECCCC-h-------HHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEE
Confidence 4566666544 1 345667777788888765431 1122223333333346666555
No 459
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=20.05 E-value=1.4e+02 Score=21.54 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=23.1
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG 53 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (148)
++|+++...-...+ .+.+.+..|..+..++||.|.+=+
T Consensus 1 Mki~fvmDpi~~i~-~~kDTT~alm~eAq~RGhev~~~~ 38 (119)
T PF02951_consen 1 MKIAFVMDPIESIK-PYKDTTFALMLEAQRRGHEVFYYE 38 (119)
T ss_dssp -EEEEEES-GGG---TTT-HHHHHHHHHHHTT-EEEEE-
T ss_pred CeEEEEeCCHHHCC-CCCChHHHHHHHHHHCCCEEEEEE
Confidence 36777765333222 356788889999999999997653
No 460
>PRK12829 short chain dehydrogenase; Provisional
Probab=20.05 E-value=2e+02 Score=21.94 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=14.8
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 032051 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (148)
Q Consensus 15 ~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (148)
++|.|.|+++. ....+.+.|+++|+.|
T Consensus 12 ~~vlItGa~g~--------iG~~~a~~L~~~g~~V 38 (264)
T PRK12829 12 LRVLVTGGASG--------IGRAIAEAFAEAGARV 38 (264)
T ss_pred CEEEEeCCCCc--------HHHHHHHHHHHCCCEE
Confidence 46666665441 2345555556666664
No 461
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=20.04 E-value=98 Score=25.04 Aligned_cols=43 Identities=9% Similarity=0.078 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCEEEEecCchhh--HHHHHHHHHHHHhCCCCCcEEEecC
Q 032051 101 HQRKAEMARNSDCFIALPGGYGT--LEELLEVITWAQLGIHDKPVNQLHV 148 (148)
Q Consensus 101 ~~R~~~~v~~sda~IvlpGG~GT--L~El~~~~~~~~lg~~~kPv~l~n~ 148 (148)
.++....++.||.+|+++=..-+ ...+.... ...+.|++++|.
T Consensus 195 ~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a-----~~~g~~viiIN~ 239 (260)
T cd01409 195 VVTAAARLAEADALLVLGSSLMVYSGYRFVLAA-----AEAGLPIAIVNI 239 (260)
T ss_pred HHHHHHHHhcCCEEEEeCcCceecchhhHHHHH-----HHCCCcEEEEcC
Confidence 45667777889999997543322 23332211 135899999994
No 462
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=20.03 E-value=2e+02 Score=25.67 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhC-CCeEEEcCCCCChHHHHHHHHhhcC--CeEEEEeCCccc
Q 032051 30 CYRDAALDLGQELVSK-KLDLVYGGGSVGLMGLVSHVVHRGG--GHVLGIIPKTLM 82 (148)
Q Consensus 30 ~~~~~A~~lG~~lA~~-g~~lv~GGG~~GlM~a~~~gA~~~G--G~viGv~p~~~~ 82 (148)
.|.-+|+.|.++++-. +..+|-|| . |-...++-|.++.- -..+|++|..+.
T Consensus 101 d~~gqak~l~e~~~t~~Dii~VaGG-D-GT~~eVVTGi~Rrr~~~~pv~~~P~G~~ 154 (535)
T KOG4435|consen 101 DNQGQAKALAEAVDTQEDIIYVAGG-D-GTIGEVVTGIFRRRKAQLPVGFYPGGYD 154 (535)
T ss_pred CcHHHHHHHHHHhccCCCeEEEecC-C-CcHHHhhHHHHhcccccCceeeccCccc
Confidence 3567888888888765 77777775 5 99999999998863 356899887664
No 463
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.02 E-value=2.3e+02 Score=21.05 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=21.1
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 032051 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (148)
Q Consensus 14 ~~~V~V~ggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (148)
+++|.|.|++.. ...+|.+.|+++|+.++.
T Consensus 6 ~~~vlItGasg~--------iG~~l~~~l~~~g~~v~~ 35 (249)
T PRK12825 6 GRVALVTGAARG--------LGRAIALRLARAGADVVV 35 (249)
T ss_pred CCEEEEeCCCch--------HHHHHHHHHHHCCCeEEE
Confidence 458889886552 346677777888988654
No 464
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=20.00 E-value=4.1e+02 Score=23.29 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=0.0
Q ss_pred EEEeCCCCCCChHH-----------HHHHHHHHHHHHhCCCe-EEEcCCCCChHHHH---HHHHhhc--CCeEEEE
Q 032051 18 CVFCGSSTGKRNCY-----------RDAALDLGQELVSKKLD-LVYGGGSVGLMGLV---SHVVHRG--GGHVLGI 76 (148)
Q Consensus 18 ~V~ggs~~~~~~~~-----------~~~A~~lG~~lA~~g~~-lv~GGG~~GlM~a~---~~gA~~~--GG~viGv 76 (148)
++.|+||....+.. .+.-+++.+.|.+.|+. |++=||. |-|..+ ++.+.+. +-.+|||
T Consensus 73 t~LGtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGd-gS~~~a~~L~~~~~~~g~~i~vvgI 147 (403)
T PRK06555 73 SPIGNSRVKLTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGD-DTNTTAADLAAYLAENGYDLTVVGL 147 (403)
T ss_pred ceeccCCCCccccchhccccccccchHHHHHHHHHHHHcCCCEEEEECCh-hHHHHHHHHHHHHHHhCCCceEEEe
Done!