BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032052
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
pdb|1MNM|B Chain B, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
Length = 100
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDK 51
VTFSKR+ G+ KKA E + +TG+Q+ +LV S G Y +P F+ ++ +
Sbjct: 34 VTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQ 83
>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The
Transcription Factor Mef2a With A 20mer Oligonucleotide
pdb|1C7U|B Chain B, Complex Of The Dna Binding Core Domain Of The
Transcription Factor Mef2a With A 20mer Oligonucleotide
Length = 85
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVN 56
VTF+KR+ GL KKA E + + ++IA+++F+ + + + S D V+ K+ N
Sbjct: 18 VTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 72
>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1SRS|B Chain B, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1HBX|A Chain A, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|B Chain B, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|D Chain D, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|E Chain E, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 92
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVI 49
TFSKR+ G+ KKA E + +TG+Q+ +LV S G+ Y + +I
Sbjct: 28 TTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMI 75
>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|B Chain B, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|I Chain I, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|J Chain J, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3P57|A Chain A, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|B Chain B, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|C Chain C, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|D Chain D, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|I Chain I, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|J Chain J, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
Length = 90
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVN 56
VTF+KR+ GL KKA E + + +IA+++F+ + + + S D V+ K+ N
Sbjct: 18 VTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 72
>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|B Chain B, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|C Chain C, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|D Chain D, Crystal Structure Of Mef2a Core Bound To Dna
Length = 77
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVN 56
VTF+KR+ GL KKA E + + +IA+++F+ + + + S D V+ K+ N
Sbjct: 18 VTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 72
>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|Q Chain Q, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|R Chain R, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|S Chain S, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
Length = 93
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF 52
VTF+KR+ GL KKA E + + +IA+++F+ A + + S D V+ K+
Sbjct: 19 VTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKY 69
>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of
Histone Deacetylases By Myocyte Enhancer Factor-2
pdb|1N6J|B Chain B, Structural Basis Of Sequence-Specific Recruitment Of
Histone Deacetylases By Myocyte Enhancer Factor-2
Length = 93
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF 52
VTF+KR+ GL KKA E + + +IA+++F+ A + + S D V+ K+
Sbjct: 18 VTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKY 68
>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
pdb|1K6O|C Chain C, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 103
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVI 49
TFSKR+ G+ KKA E + +TG+Q+ +LV S G+ Y + +I
Sbjct: 27 TTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMI 74
>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|B Chain B, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|C Chain C, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|D Chain D, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
Length = 71
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF 52
VTF+KR+ GL KKA E + + +IA+++F+ + + + S D V+ K+
Sbjct: 18 VTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 27.7 bits (60), Expect = 2.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 78 PTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRS 111
P FH+ L H E V FL L+D + + R+
Sbjct: 438 PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 27.7 bits (60), Expect = 2.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 78 PTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRS 111
P FH+ L H E V FL L+D + + R+
Sbjct: 438 PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 27.7 bits (60), Expect = 2.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 78 PTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRS 111
P FH+ L H E V FL L+D + + R+
Sbjct: 442 PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 475
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 27.7 bits (60), Expect = 2.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 78 PTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRS 111
P FH+ L H E V FL L+D + + R+
Sbjct: 442 PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 475
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 27.7 bits (60), Expect = 2.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 78 PTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRS 111
P FH+ L H E V FL L+D + + R+
Sbjct: 438 PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471
>pdb|2E5A|A Chain A, Crystal Structure Of Bovine Lipoyltransferase In Complex
With Lipoyl-Amp
pdb|3A7U|A Chain A, Crystal Structure Of The Bovine Lipoyltransferase In Its
Unliganded Form
Length = 347
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 39 VHGSPSFDAVIDKFLSVNGGASSSGQVGAHHNEADVCRTPTPF 81
V + FD ++D ++G AS G+ A+H+ +C T F
Sbjct: 120 VQATKRFDLLLDGQFKISGTASKIGRNAAYHHCTLLCGTDGTF 162
>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa
Hydrolase In Complex With Quercetin
Length = 363
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 22/135 (16%)
Query: 10 GLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNG-----------G 58
G F+ A E + A+ +F G Y P + FL++ G G
Sbjct: 124 GQFRVATEKCLFAXPETAIGLFPDVGGGYFL--PRLQGKLGYFLALTGFRLKGRDVYRAG 181
Query: 59 ASS----SGQVGAHHNEADVCRTPTPFHL--VLQNHHNEADVCRGFLMALE---DKIKRC 109
++ S ++ + ++P+ ++ VL+N+H E+ + R LE DKI C
Sbjct: 182 IATHFVDSEKLAXLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHXDKINSC 241
Query: 110 RSAEDLSAVKAELEE 124
SA + + L++
Sbjct: 242 FSANTVEEIIENLQQ 256
>pdb|2POP|A Chain A, The Crystal Structure Of Tab1 And Bir1 Complex
pdb|2POP|C Chain C, The Crystal Structure Of Tab1 And Bir1 Complex
Length = 353
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 21/71 (29%)
Query: 63 GQVGAHHNEADVCRTPTPFHLVLQNHHNEADVC-RGFLMALEDKIKRCRSAEDLSAVKAE 121
GQ+ A H EADV R ++LQ DV R FL +++D + A KA
Sbjct: 93 GQLNAEHAEADVRR------VLLQAF----DVVERSFLESIDDAL----------AEKAS 132
Query: 122 LEEVRVKVLQR 132
L+ R+K L+R
Sbjct: 133 LQLERLKTLER 143
>pdb|2J4O|A Chain A, Structure Of Tab1
Length = 401
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 14/81 (17%)
Query: 63 GQVGAHHNEADVCRTPTPFHLVLQNHHNEADVC-RGFLMALEDKIKRCRSAEDL---SAV 118
GQ+ A H EADV R ++LQ DV R FL +++D + S +
Sbjct: 91 GQLNAEHAEADVRR------VLLQAF----DVVERSFLESIDDALAEKASLQSQLPEGVP 140
Query: 119 KAELEEVRVKVLQRLKHIEED 139
+ +L K+L+RLK +E +
Sbjct: 141 QHQLPPQYQKILERLKTLERE 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,344,346
Number of Sequences: 62578
Number of extensions: 161556
Number of successful extensions: 403
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 20
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)