Query 032052
Match_columns 148
No_of_seqs 109 out of 1299
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 14:21:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 5.5E-33 1.9E-37 174.1 3.2 58 1-58 17-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 1.8E-32 6E-37 175.8 4.0 60 1-60 17-76 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 3.6E-30 1.2E-34 167.8 2.2 54 1-54 33-86 (100)
4 1hbx_A SRF, serum response fac 100.0 5.2E-30 1.8E-34 165.0 0.2 53 1-53 27-79 (92)
5 1k6o_B SRF, serum response fac 99.9 2.2E-29 7.4E-34 165.1 0.0 52 1-52 26-77 (103)
6 1g6u_A Domain swapped dimer; d 75.3 7 0.00024 20.5 6.8 29 108-136 15-43 (48)
7 1p9i_A Cortexillin I/GCN4 hybr 70.8 6.8 0.00023 18.7 3.2 26 113-138 2-27 (31)
8 3fx7_A Putative uncharacterize 64.9 14 0.00047 23.2 4.7 31 109-139 5-35 (94)
9 1ytz_T Troponin T; muscle, THI 64.8 25 0.00085 22.5 6.1 30 108-137 40-69 (107)
10 1m2d_A [2Fe-2S] ferredoxin; th 55.8 9.4 0.00032 24.2 2.9 33 22-55 59-92 (110)
11 3he5_A Synzip1; heterodimeric 54.7 22 0.00074 18.6 4.1 42 78-134 7-48 (49)
12 3twe_A Alpha4H; unknown functi 52.3 17 0.00058 16.7 3.3 14 114-127 9-22 (27)
13 2phn_A F420-0:gamma-glutamyl l 47.3 3.9 0.00013 30.5 -0.1 28 17-44 138-165 (254)
14 2l5g_B Putative uncharacterize 46.2 29 0.001 18.3 3.3 29 110-138 2-30 (42)
15 1r8j_A KAIA; circadian clock p 44.9 97 0.0033 23.3 8.4 78 45-129 123-206 (289)
16 2l5g_A GPS2 protein, G protein 42.6 21 0.00072 18.3 2.3 27 110-136 8-34 (38)
17 1j1d_B Troponin T, TNT; THIN f 41.7 54 0.0019 20.9 4.8 30 108-137 40-69 (106)
18 1txp_A HnRNP C, heterogeneous 39.3 33 0.0011 16.3 3.3 18 113-130 6-23 (28)
19 1j1d_C Troponin I, TNI; THIN f 37.2 90 0.0031 20.7 7.7 30 108-137 56-85 (133)
20 4gmn_B 60S ribosomal protein L 37.2 5.4 0.00018 21.7 -0.5 10 1-10 17-26 (49)
21 2ky6_A Mediator of RNA polymer 32.4 25 0.00087 24.3 2.2 36 20-55 117-160 (166)
22 1utg_A Uteroglobin; steroid bi 32.2 34 0.0012 19.9 2.5 20 108-127 46-65 (70)
23 1j1e_C Troponin I, TNI; THIN f 31.9 1.3E+02 0.0045 21.0 7.2 30 108-137 56-85 (180)
24 2aze_B Transcription factor E2 30.9 97 0.0033 19.6 4.7 27 113-139 16-42 (106)
25 2dl1_A Spartin; SPG20, MIT, st 28.3 89 0.003 20.2 4.2 34 108-141 66-99 (116)
26 3tso_C RAB11 family-interactin 28.0 99 0.0034 18.4 4.8 27 114-140 36-62 (75)
27 1tjl_A DNAK suppressor protein 27.1 1.2E+02 0.0041 20.4 4.9 29 108-136 30-58 (151)
28 3hvz_A Uncharacterized protein 26.2 43 0.0015 19.9 2.2 25 27-51 7-32 (78)
29 1lj9_A Transcriptional regulat 25.9 1.2E+02 0.004 19.0 4.6 28 108-135 113-140 (144)
30 2gzd_C RAB11 family-interactin 25.0 61 0.0021 20.6 2.8 28 113-140 67-94 (107)
31 3kp7_A Transcriptional regulat 24.7 1.2E+02 0.004 19.3 4.5 28 108-135 123-150 (151)
32 1fxk_A Prefoldin; archaeal pro 23.9 67 0.0023 19.7 3.0 13 43-55 1-13 (107)
33 3tnu_A Keratin, type I cytoske 23.1 1.6E+02 0.0054 19.0 6.2 65 72-138 36-105 (131)
34 2hq4_A Hypothetical protein PH 22.7 37 0.0012 22.8 1.5 25 30-54 135-159 (161)
35 2yy0_A C-MYC-binding protein; 22.6 47 0.0016 18.3 1.8 19 78-96 23-41 (53)
36 2oqq_A Transcription factor HY 22.3 96 0.0033 16.2 4.8 32 112-143 5-36 (42)
37 2k1v_A Insulin-like peptide IN 22.2 20 0.00068 16.8 0.1 9 15-23 14-22 (26)
38 3tnu_B Keratin, type II cytosk 21.9 1.6E+02 0.0054 19.0 4.6 64 73-138 35-103 (129)
39 2ygg_A Sodium/hydrogen exchang 21.3 1.3E+02 0.0046 17.6 4.1 26 109-134 3-28 (70)
40 2l5l_A Thioredoxin; structural 21.1 1.6E+02 0.0054 18.3 4.5 32 27-58 95-130 (136)
41 2k4y_A FEOA-like protein; GFT 20.7 77 0.0026 18.8 2.7 33 8-40 24-56 (86)
42 2fbh_A Transcriptional regulat 20.4 78 0.0027 19.8 2.9 24 108-131 122-145 (146)
43 2k5l_A FEOA; structure, NESG, 20.1 83 0.0029 18.4 2.7 32 9-40 22-53 (81)
44 1ryp_E 20S proteasome; multica 20.1 24 0.00083 25.3 0.2 11 28-38 4-14 (242)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.97 E-value=5.5e-33 Score=174.09 Aligned_cols=58 Identities=33% Similarity=0.519 Sum_probs=54.0
Q ss_pred CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHHHHhhhcCCC
Q 032052 1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGG 58 (148)
Q Consensus 1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi~ry~~~~~~ 58 (148)
||||+|||+||||||+||||||||+||+|||||+|++|+|++|+++.|++||...+++
T Consensus 17 ~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 17 QVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred HHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 7999999999999999999999999999999999999999999999999999987654
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.97 E-value=1.8e-32 Score=175.84 Aligned_cols=60 Identities=32% Similarity=0.498 Sum_probs=56.9
Q ss_pred CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHHHHhhhcCCCCC
Q 032052 1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLSVNGGAS 60 (148)
Q Consensus 1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi~ry~~~~~~~~ 60 (148)
||||+|||.||||||+||||||||+||+|||||+|++|+|+||+|+.|++||...+++..
T Consensus 17 ~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~ 76 (90)
T 3p57_A 17 QVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHE 76 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCC
T ss_pred HHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccc
Confidence 799999999999999999999999999999999999999999999999999999776643
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.96 E-value=3.6e-30 Score=167.78 Aligned_cols=54 Identities=39% Similarity=0.659 Sum_probs=52.2
Q ss_pred CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHHHHhhh
Q 032052 1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFLS 54 (148)
Q Consensus 1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi~ry~~ 54 (148)
||||+|||.||||||+||||||||+||+|||||+|++|+|++|++..|+++|..
T Consensus 33 ~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 33 HVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred hhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 699999999999999999999999999999999999999999999999999954
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.95 E-value=5.2e-30 Score=164.99 Aligned_cols=53 Identities=36% Similarity=0.574 Sum_probs=50.9
Q ss_pred CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHHHHhh
Q 032052 1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKFL 53 (148)
Q Consensus 1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi~ry~ 53 (148)
||||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.||++|.
T Consensus 27 ~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 27 YTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred HHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 69999999999999999999999999999999999999999999999998764
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.95 E-value=2.2e-29 Score=165.08 Aligned_cols=52 Identities=37% Similarity=0.593 Sum_probs=50.2
Q ss_pred CceeccccchHHHhHHHHHHhhCcceeEEEeCCCCCCcccCCcchHHHHHHh
Q 032052 1 MVTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGNPYVHGSPSFDAVIDKF 52 (148)
Q Consensus 1 qvtf~KRr~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~~~psv~~Vi~ry 52 (148)
||||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.||+++
T Consensus 26 ~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 26 YTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred HHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 6999999999999999999999999999999999999999999999999873
No 6
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=75.32 E-value=7 Score=20.47 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032052 108 RCRSAEDLSAVKAELEEVRVKVLQRLKHI 136 (148)
Q Consensus 108 ~~ls~eeL~~L~~~Le~~l~~v~~r~~~l 136 (148)
++.|+++|-.|+..|..+-+.+..-+..+
T Consensus 15 egfspeelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999987776666655544443
No 7
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=70.79 E-value=6.8 Score=18.67 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032052 113 EDLSAVKAELEEVRVKVLQRLKHIEE 138 (148)
Q Consensus 113 eeL~~L~~~Le~~l~~v~~r~~~l~~ 138 (148)
++|..|..+|+.--+.+..+.++|..
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777654
No 8
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=64.94 E-value=14 Score=23.22 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 032052 109 CRSAEDLSAVKAELEEVRVKVLQRLKHIEED 139 (148)
Q Consensus 109 ~ls~eeL~~L~~~Le~~l~~v~~r~~~l~~~ 139 (148)
-++++||+.|...|+.....++.....|..+
T Consensus 5 ~~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~ 35 (94)
T 3fx7_A 5 QMDTEEVREFVGHLERFKELLREEVNSLSNH 35 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999988887664
No 9
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=64.82 E-value=25 Score=22.54 Aligned_cols=30 Identities=10% Similarity=0.010 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032052 108 RCRSAEDLSAVKAELEEVRVKVLQRLKHIE 137 (148)
Q Consensus 108 ~~ls~eeL~~L~~~Le~~l~~v~~r~~~l~ 137 (148)
++||.++|+++...|...+..+.+-+..|.
T Consensus 40 d~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 40 DHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp SSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 899999999999999988888877765544
No 10
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=55.77 E-value=9.4 Score=24.16 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=22.0
Q ss_pred hCcceeEEEeCCCCCCcccCCcc-hHHHHHHhhhc
Q 032052 22 TGSQIAVLVFSPAGNPYVHGSPS-FDAVIDKFLSV 55 (148)
Q Consensus 22 Cg~~vavivfsp~gk~~~~~~ps-v~~Vi~ry~~~ 55 (148)
|+-.-.|+|+ |+|..|...+|. +.+||+.+...
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~~ 92 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLKG 92 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHHC
Confidence 4333345555 888777666774 89999997543
No 11
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=54.65 E-value=22 Score=18.64 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=23.5
Q ss_pred CchHHHHHHHHHhHHHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 032052 78 PTPFHLVLQNHHNEADVCRGFLMALEDKIKRCRSAEDLSAVKAELEEVRVKVLQRLK 134 (148)
Q Consensus 78 ~L~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~ls~eeL~~L~~~Le~~l~~v~~r~~ 134 (148)
.|..++..+.++++.+++++.-+ ..|...|+.-+.++|.+++
T Consensus 7 qlenevaslenenetlkkknlhk---------------kdliaylekeianlrkkie 48 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHK---------------KDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccHHHHHhcccH---------------HHHHHHHHHHHHHHHHHhc
Confidence 34455566666666665553111 2455666666666666654
No 12
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=52.30 E-value=17 Score=16.72 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 032052 114 DLSAVKAELEEVRV 127 (148)
Q Consensus 114 eL~~L~~~Le~~l~ 127 (148)
||..|...|..+.+
T Consensus 9 eledlqerlrklrk 22 (27)
T 3twe_A 9 ELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444433333
No 13
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=47.26 E-value=3.9 Score=30.47 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=23.5
Q ss_pred HHHHhhCcceeEEEeCCCCCCcccCCcc
Q 032052 17 EYANITGSQIAVLVFSPAGNPYVHGSPS 44 (148)
Q Consensus 17 ELs~LCg~~vavivfsp~gk~~~~~~ps 44 (148)
+|.-.+|++|+|||+.+.|+++..|.+.
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~~ 165 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVVG 165 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCcc
Confidence 4557789999999999999988877654
No 14
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=46.19 E-value=29 Score=18.28 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032052 110 RSAEDLSAVKAELEEVRVKVLQRLKHIEE 138 (148)
Q Consensus 110 ls~eeL~~L~~~Le~~l~~v~~r~~~l~~ 138 (148)
+|-+||-+=.+.+++=+..++.+++.+..
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666655544
No 15
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=44.87 E-value=97 Score=23.28 Aligned_cols=78 Identities=10% Similarity=0.031 Sum_probs=46.0
Q ss_pred hHHHHHHhhhcCCCCCCCCcccCCCccccccCCCchHHHHHHHHHhHHHHHHh-hhc---c--ccccccCCCCHHHHHHH
Q 032052 45 FDAVIDKFLSVNGGASSSGQVGAHHNEADVCRTPTPFHLVLQNHHNEADVCRG-FLM---A--LEDKIKRCRSAEDLSAV 118 (148)
Q Consensus 45 v~~Vi~ry~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~l~~~~~~~-~l~---~--~~~~~~~~ls~eeL~~L 118 (148)
+++.|.+|+..++..........- ...... .+..+-.+|-+++ ++|. .+| . ...++ .+|+..|=++|
T Consensus 123 Id~AI~~Fl~l~~~~~~~~~~~~~-~~~~~~--~l~~qQ~rL~~KL---kERLGYLGVYYKR~p~~F~-rnl~~~ErqeL 195 (289)
T 1r8j_A 123 VDAALAEFLRLAPVETMADHIMLM-GANHDP--ELSSQQRDLAQRL---QERLGYLGVYYKRDPDRFL-RNLPAYESQKL 195 (289)
T ss_dssp HHHHHHHHHHHCSCCBTTTCCSCC-----CT--TGGGHHHHHHHHH---HHHHEEEEEEECCCGGGST-TTSCHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCcccccc-ccchhh--hhhhHHhhHHHHH---HHHhcccceeeeeCHHHHH-HhCCHHHHHHH
Confidence 789999999988764332211110 001122 5555545554433 4454 444 1 23455 99999999999
Q ss_pred HHHHHHHHHHH
Q 032052 119 KAELEEVRVKV 129 (148)
Q Consensus 119 ~~~Le~~l~~v 129 (148)
..+|..-...|
T Consensus 196 l~~Lk~~YR~I 206 (289)
T 1r8j_A 196 HQAMQTSYREI 206 (289)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998777664
No 16
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.58 E-value=21 Score=18.31 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032052 110 RSAEDLSAVKAELEEVRVKVLQRLKHI 136 (148)
Q Consensus 110 ls~eeL~~L~~~Le~~l~~v~~r~~~l 136 (148)
|+++|-++=...|+..+..++..+.+|
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444
No 17
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=41.72 E-value=54 Score=20.88 Aligned_cols=30 Identities=10% Similarity=0.036 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032052 108 RCRSAEDLSAVKAELEEVRVKVLQRLKHIE 137 (148)
Q Consensus 108 ~~ls~eeL~~L~~~Le~~l~~v~~r~~~l~ 137 (148)
++||.++|+++...|-..+..+.+-+..|.
T Consensus 40 d~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 40 DHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 899999999999999988888877765543
No 18
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=39.32 E-value=33 Score=16.33 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032052 113 EDLSAVKAELEEVRVKVL 130 (148)
Q Consensus 113 eeL~~L~~~Le~~l~~v~ 130 (148)
.||.+++..+|.++.++.
T Consensus 6 kELtQIK~kvDsLLe~Le 23 (28)
T 1txp_A 6 KELTQIKQKVDSLLENLE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467777777777776654
No 19
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=37.17 E-value=90 Score=20.70 Aligned_cols=30 Identities=20% Similarity=0.094 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032052 108 RCRSAEDLSAVKAELEEVRVKVLQRLKHIE 137 (148)
Q Consensus 108 ~~ls~eeL~~L~~~Le~~l~~v~~r~~~l~ 137 (148)
+++|.++|+++...|-..+..+.+-+..+.
T Consensus 56 d~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 56 AGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 899999999999999888888776655443
No 20
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}
Probab=37.15 E-value=5.4 Score=21.72 Aligned_cols=10 Identities=50% Similarity=0.919 Sum_probs=7.3
Q ss_pred Cceeccccch
Q 032052 1 MVTFSKRRQG 10 (148)
Q Consensus 1 qvtf~KRr~G 10 (148)
||.|.+||.|
T Consensus 17 QvkfRRRREG 26 (49)
T 4gmn_B 17 QTKFKRRRQG 26 (49)
T ss_pred hhHHhhhhcc
Confidence 6777777776
No 21
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=32.41 E-value=25 Score=24.27 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=25.6
Q ss_pred HhhCcceeEEEeCCCCCCcc-c-CC-cc-----hHHHHHHhhhc
Q 032052 20 NITGSQIAVLVFSPAGNPYV-H-GS-PS-----FDAVIDKFLSV 55 (148)
Q Consensus 20 ~LCg~~vavivfsp~gk~~~-~-~~-ps-----v~~Vi~ry~~~ 55 (148)
.-|.+.|-+++|||.-+.|. | ++ +. ++.||..++..
T Consensus 117 ~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~~ 160 (166)
T 2ky6_A 117 APCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQV 160 (166)
T ss_dssp CCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 34999999999999888774 3 22 11 66777777654
No 22
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=32.18 E-value=34 Score=19.95 Aligned_cols=20 Identities=5% Similarity=-0.051 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 032052 108 RCRSAEDLSAVKAELEEVRV 127 (148)
Q Consensus 108 ~~ls~eeL~~L~~~Le~~l~ 127 (148)
+.+|.+.+..+...|+....
T Consensus 46 d~ls~e~~~~i~~~l~kI~~ 65 (70)
T 1utg_A 46 DSLPQTTRENIMKLTEKIVK 65 (70)
T ss_dssp TTSCHHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHc
Confidence 88999999998888877653
No 23
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=31.92 E-value=1.3e+02 Score=21.01 Aligned_cols=30 Identities=20% Similarity=0.094 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032052 108 RCRSAEDLSAVKAELEEVRVKVLQRLKHIE 137 (148)
Q Consensus 108 ~~ls~eeL~~L~~~Le~~l~~v~~r~~~l~ 137 (148)
++||.++|+++...|-..+..+.+-...|.
T Consensus 56 d~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 56 AGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 899999999999999888887766655443
No 24
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=30.91 E-value=97 Score=19.56 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 032052 113 EDLSAVKAELEEVRVKVLQRLKHIEED 139 (148)
Q Consensus 113 eeL~~L~~~Le~~l~~v~~r~~~l~~~ 139 (148)
++|.+-+..|+..+..++..+..+..+
T Consensus 16 ~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 16 RQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666677777777777777766654
No 25
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.31 E-value=89 Score=20.23 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 032052 108 RCRSAEDLSAVKAELEEVRVKVLQRLKHIEEDEF 141 (148)
Q Consensus 108 ~~ls~eeL~~L~~~Le~~l~~v~~r~~~l~~~~~ 141 (148)
.+-..+.-++|...+...+..|+.|+..|.....
T Consensus 66 ~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~~~~ 99 (116)
T 2dl1_A 66 TGPGWESARQMQQKMKETLQNVRTRLEILEKGLA 99 (116)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3566789999999999999999999999988765
No 26
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=28.03 E-value=99 Score=18.38 Aligned_cols=27 Identities=11% Similarity=0.242 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 032052 114 DLSAVKAELEEVRVKVLQRLKHIEEDE 140 (148)
Q Consensus 114 eL~~L~~~Le~~l~~v~~r~~~l~~~~ 140 (148)
.+++|++.||.++-+|-+.-..+++.+
T Consensus 36 ~v~eLEdYID~LLvRVME~~P~iLq~p 62 (75)
T 3tso_C 36 HIRELEDYIDNLLVRVMEETPSILRVP 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGGBSS
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHhhCC
Confidence 456889999999999888877766543
No 27
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=27.15 E-value=1.2e+02 Score=20.37 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032052 108 RCRSAEDLSAVKAELEEVRVKVLQRLKHI 136 (148)
Q Consensus 108 ~~ls~eeL~~L~~~Le~~l~~v~~r~~~l 136 (148)
+.|+.++|..|...|...+..+..++...
T Consensus 30 ~~M~~~ql~~fr~~L~~~k~eL~~~l~~~ 58 (151)
T 1tjl_A 30 EYMNEAQLAHFRRILEAWRNQLRDEVDRT 58 (151)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777777777777777776666543
No 28
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=26.19 E-value=43 Score=19.90 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=17.5
Q ss_pred eEEEeCCCCCCcccCCc-chHHHHHH
Q 032052 27 AVLVFSPAGNPYVHGSP-SFDAVIDK 51 (148)
Q Consensus 27 avivfsp~gk~~~~~~p-sv~~Vi~r 51 (148)
-|.||.|.|....++.. ++.+++.+
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHH
Confidence 37899999999988654 34455443
No 29
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=25.92 E-value=1.2e+02 Score=18.99 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 032052 108 RCRSAEDLSAVKAELEEVRVKVLQRLKH 135 (148)
Q Consensus 108 ~~ls~eeL~~L~~~Le~~l~~v~~r~~~ 135 (148)
..++.+|+..|...|..+...+...+++
T Consensus 113 ~~l~~~e~~~l~~~l~~l~~~l~~~~~~ 140 (144)
T 1lj9_A 113 QGLSEVEISQLADYLVRMRKNVSEDWEF 140 (144)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 8999999999999999999988877665
No 30
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=24.97 E-value=61 Score=20.60 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 032052 113 EDLSAVKAELEEVRVKVLQRLKHIEEDE 140 (148)
Q Consensus 113 eeL~~L~~~Le~~l~~v~~r~~~l~~~~ 140 (148)
..+.+|++.|+.++-+|-+.-..+++-+
T Consensus 67 ~~IrELEDYID~LLvRVME~tP~ILqvp 94 (107)
T 2gzd_C 67 THIRELEDYIDNLLVRVMEETPSILRVP 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGBSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhhhCC
Confidence 4678999999999999988766666543
No 31
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=24.70 E-value=1.2e+02 Score=19.30 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 032052 108 RCRSAEDLSAVKAELEEVRVKVLQRLKH 135 (148)
Q Consensus 108 ~~ls~eeL~~L~~~Le~~l~~v~~r~~~ 135 (148)
++++.+|+..|...|+.+...+..-.+.
T Consensus 123 ~~l~~~e~~~l~~~l~~l~~~l~~~~~~ 150 (151)
T 3kp7_A 123 SDFDSKEIEKVRQVLEIIDYRIQSYTSK 150 (151)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999888765543
No 32
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.93 E-value=67 Score=19.70 Aligned_cols=13 Identities=8% Similarity=0.279 Sum_probs=9.1
Q ss_pred cchHHHHHHhhhc
Q 032052 43 PSFDAVIDKFLSV 55 (148)
Q Consensus 43 psv~~Vi~ry~~~ 55 (148)
|.++..+.+|...
T Consensus 1 ~~~Q~~i~~f~~l 13 (107)
T 1fxk_A 1 QNVQHQLAQFQQL 13 (107)
T ss_dssp CCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 5677778888653
No 33
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.10 E-value=1.6e+02 Score=19.04 Aligned_cols=65 Identities=6% Similarity=0.048 Sum_probs=35.0
Q ss_pred ccccCCCchHHHHHHHHHhHHHHHHh-hhc----cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032052 72 ADVCRTPTPFHLVLQNHHNEADVCRG-FLM----ALEDKIKRCRSAEDLSAVKAELEEVRVKVLQRLKHIEE 138 (148)
Q Consensus 72 ~~~~~~~L~~~~~~l~~~l~~~~~~~-~l~----~~~~~~~~~ls~eeL~~L~~~Le~~l~~v~~r~~~l~~ 138 (148)
.+.++..++..+..|+.+++..+... .+. +-... ..+-+++++.....|+.-+..++..+.....
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~--~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~ 105 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR--YCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQ 105 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888776544 222 10000 2334455555556666666666666555443
No 34
>2hq4_A Hypothetical protein PH1570; singleton protein, structural genomics, PSI southeast collaboratory for structural genomics, secsg; 1.99A {Pyrococcus horikoshii} SCOP: d.342.1.1
Probab=22.65 E-value=37 Score=22.79 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=20.7
Q ss_pred EeCCCCCCcccCCcchHHHHHHhhh
Q 032052 30 VFSPAGNPYVHGSPSFDAVIDKFLS 54 (148)
Q Consensus 30 vfsp~gk~~~~~~psv~~Vi~ry~~ 54 (148)
+..|.|.+|.|.-||+.+.|=+|.-
T Consensus 135 ilD~kg~LfvFNKPs~~e~ilKYi~ 159 (161)
T 2hq4_A 135 ILDPRGRLFIFNKPSIANKILKYIW 159 (161)
T ss_dssp EECTTSEEEEESSTTHHHHHHTTTT
T ss_pred EECCCceEEEecCccHHHHHHHHHh
Confidence 4566788999999999999988853
No 35
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.64 E-value=47 Score=18.28 Aligned_cols=19 Identities=21% Similarity=0.031 Sum_probs=10.7
Q ss_pred CchHHHHHHHHHhHHHHHH
Q 032052 78 PTPFHLVLQNHHNEADVCR 96 (148)
Q Consensus 78 ~L~~~~~~l~~~l~~~~~~ 96 (148)
.|+.++..|+.+++.+..+
T Consensus 23 aLk~E~~eLk~k~~~L~~~ 41 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEE 41 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666655555443
No 36
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=22.26 E-value=96 Score=16.24 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 032052 112 AEDLSAVKAELEEVRVKVLQRLKHIEEDEFVT 143 (148)
Q Consensus 112 ~eeL~~L~~~Le~~l~~v~~r~~~l~~~~~~~ 143 (148)
+.||..=...|+.....+.+|+.-|+..-+|.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45677777777777778888887777766664
No 37
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=22.20 E-value=20 Score=16.83 Aligned_cols=9 Identities=0% Similarity=0.161 Sum_probs=6.6
Q ss_pred HHHHHHhhC
Q 032052 15 AQEYANITG 23 (148)
Q Consensus 15 a~ELs~LCg 23 (148)
-+|||.||.
T Consensus 14 msDLs~lC~ 22 (26)
T 2k1v_A 14 MTDLSALCX 22 (26)
T ss_dssp HHHHTTTC-
T ss_pred HHHHHHHHh
Confidence 378999994
No 38
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.92 E-value=1.6e+02 Score=18.98 Aligned_cols=64 Identities=16% Similarity=-0.010 Sum_probs=34.7
Q ss_pred cccCCCchHHHHHHHHHhHHHHHHh-hhc----cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032052 73 DVCRTPTPFHLVLQNHHNEADVCRG-FLM----ALEDKIKRCRSAEDLSAVKAELEEVRVKVLQRLKHIEE 138 (148)
Q Consensus 73 ~~~~~~L~~~~~~l~~~l~~~~~~~-~l~----~~~~~~~~~ls~eeL~~L~~~Le~~l~~v~~r~~~l~~ 138 (148)
+.++..++..+..|+.+++..+... .+. +.... ..+-+.+++.....|+.-+..++..+.....
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~--~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~ 103 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR--GELALKDARNKLAELEEALQKAKQDMARLLR 103 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455577777777777777766544 222 10000 2334455555556666666666666555433
No 39
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=21.28 E-value=1.3e+02 Score=17.55 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 032052 109 CRSAEDLSAVKAELEEVRVKVLQRLK 134 (148)
Q Consensus 109 ~ls~eeL~~L~~~Le~~l~~v~~r~~ 134 (148)
.++.+++.++.+-|..-+-++|.|..
T Consensus 3 ~ls~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 3 ALSKDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999998863
No 40
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=21.12 E-value=1.6e+02 Score=18.26 Aligned_cols=32 Identities=31% Similarity=0.594 Sum_probs=20.2
Q ss_pred eEEEeCCCCCCccc-CCcc---hHHHHHHhhhcCCC
Q 032052 27 AVLVFSPAGNPYVH-GSPS---FDAVIDKFLSVNGG 58 (148)
Q Consensus 27 avivfsp~gk~~~~-~~ps---v~~Vi~ry~~~~~~ 58 (148)
.+++|.++|+...+ |..+ +...|+++....++
T Consensus 95 t~~~~~~~G~~~~~~G~~~~~~l~~~l~~~~~~~~~ 130 (136)
T 2l5l_A 95 SILFIPMEGKPEMAQGAMPKASFKKAIDEFLLKKEG 130 (136)
T ss_dssp EEEEECSSSCCEEEESCCCHHHHHHHHHHHHTSCTT
T ss_pred EEEEECCCCcEEEEeCCCCHHHHHHHHHHHhhccCC
Confidence 56778788887543 4433 56677777665544
No 41
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=20.73 E-value=77 Score=18.79 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=27.9
Q ss_pred cchHHHhHHHHHHhhCcceeEEEeCCCCCCccc
Q 032052 8 RQGLFKKAQEYANITGSQIAVLVFSPAGNPYVH 40 (148)
Q Consensus 8 r~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~ 40 (148)
-..+.++..++-+.-|++|.++=.+|.|.|..+
T Consensus 24 ~~~~~~rL~~mGl~pG~~V~V~~~~p~~gpi~v 56 (86)
T 2k4y_A 24 ESKVRRKIMDMGIVRGTEIYIEGKAPMGDPIAL 56 (86)
T ss_dssp TSSHHHHHHHHTCCTTCEEEEEEECTTSCSEEE
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEeCCCCCCEEE
Confidence 356888999999999999999999997766654
No 42
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.40 E-value=78 Score=19.81 Aligned_cols=24 Identities=4% Similarity=-0.003 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 032052 108 RCRSAEDLSAVKAELEEVRVKVLQ 131 (148)
Q Consensus 108 ~~ls~eeL~~L~~~Le~~l~~v~~ 131 (148)
++++.+|+..|...|+...+.+..
T Consensus 122 ~~l~~~e~~~l~~~l~~l~~~l~~ 145 (146)
T 2fbh_A 122 TGIDESEQALCQQVLLRILANLEN 145 (146)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999988887754
No 43
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=20.14 E-value=83 Score=18.36 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=27.4
Q ss_pred chHHHhHHHHHHhhCcceeEEEeCCCCCCccc
Q 032052 9 QGLFKKAQEYANITGSQIAVLVFSPAGNPYVH 40 (148)
Q Consensus 9 ~GL~KKa~ELs~LCg~~vavivfsp~gk~~~~ 40 (148)
..+.++..++-+.-|++|.++=.+|.|.|..+
T Consensus 22 ~~~~~rL~~lGl~pG~~v~V~~~~p~~gpi~v 53 (81)
T 2k5l_A 22 GALKRRIMDMGITRGCEIYIRKVAPLGDPIQI 53 (81)
T ss_dssp SHHHHHHHHHTCCTTCEEEEEEECTTSCCEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEeCCCCCCEEE
Confidence 56788999999999999999999997766654
No 44
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=20.14 E-value=24 Score=25.33 Aligned_cols=11 Identities=45% Similarity=0.842 Sum_probs=8.5
Q ss_pred EEEeCCCCCCc
Q 032052 28 VLVFSPAGNPY 38 (148)
Q Consensus 28 vivfsp~gk~~ 38 (148)
+-+|||.|++|
T Consensus 4 ~t~fsp~Grl~ 14 (242)
T 1ryp_E 4 VSTFSPEGRLF 14 (242)
T ss_dssp TTCBCTTSCBH
T ss_pred CceECCCCcCh
Confidence 34788888887
Done!