BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032054
         (148 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1U1I|A Chain A, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
 pdb|1U1I|B Chain B, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
 pdb|1U1I|C Chain C, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
 pdb|1U1I|D Chain D, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
 pdb|3QVS|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
           Fulgidus Wild Type
 pdb|3QVT|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
           Fulgidus Wild- Type With The Intermediate 5-Keto
           1-Phospho Glucose
          Length = 392

 Score = 27.3 bits (59), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 24  LMQRVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLK 78
           ++ R+E DI S  D+ + ++NVA     P        S E F   +   R   A+ S+L 
Sbjct: 126 MVSRIEEDIKSFADDETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYASASMLY 185

Query: 79  LVSELKQTAIFSGF 92
             + LK    ++ F
Sbjct: 186 AYAALKLGLPYANF 199


>pdb|3QVX|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
           Fulgidus Mutant K367a
          Length = 392

 Score = 27.3 bits (59), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 24  LMQRVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLK 78
           ++ R+E DI S  D+ + ++NVA     P        S E F   +   R   A+ S+L 
Sbjct: 126 MVSRIEEDIKSFADDETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYASASMLY 185

Query: 79  LVSELKQTAIFSGF 92
             + LK    ++ F
Sbjct: 186 AYAALKLGLPYANF 199


>pdb|3QVW|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
           Fulgidus Mutant K278a
          Length = 392

 Score = 27.3 bits (59), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 24  LMQRVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLK 78
           ++ R+E DI S  D+ + ++NVA     P        S E F   +   R   A+ S+L 
Sbjct: 126 MVSRIEEDIKSFADDETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYASASMLY 185

Query: 79  LVSELKQTAIFSGF 92
             + LK    ++ F
Sbjct: 186 AYAALKLGLPYANF 199


>pdb|3QW2|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
           Mutant N255a
 pdb|3QW2|B Chain B, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
           Mutant N255a
 pdb|3QW2|C Chain C, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
           Mutant N255a
 pdb|3QW2|D Chain D, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
           Mutant N255a
          Length = 392

 Score = 27.3 bits (59), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 24  LMQRVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRMVQAADSLLK 78
           ++ R+E DI S  D+ + ++NVA     P        S E F   +   R   A+ S+L 
Sbjct: 126 MVSRIEEDIKSFADDETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYASASMLY 185

Query: 79  LVSELKQTAIFSGF 92
             + LK    ++ F
Sbjct: 186 AYAALKLGLPYANF 199


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.124    0.328 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,876,736
Number of Sequences: 62578
Number of extensions: 71395
Number of successful extensions: 134
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 4
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)